AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0146610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146610 MtrunA17_Chr1g0168341 100.000 239 0 0 1 239 1 239 2.88e-177 486
Msa0146610 MtrunA17_Chr1g0155631 99.582 239 1 0 1 239 1 239 4.92e-177 485
Msa0146610 MtrunA17_Chr6g0469891 94.444 234 8 1 5 238 1 229 1.04e-162 449
Msa0146610 MtrunA17_Chr6g0469871 94.444 234 8 1 5 238 1 229 1.04e-162 449
Msa0146610 MtrunA17_Chr1g0210251 86.383 235 31 1 1 234 1 235 4.02e-150 417
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146610 AT5G35530.1 88.841 233 26 0 1 233 1 233 2.12e-153 426
Msa0146610 AT2G31610.1 88.987 227 25 0 1 227 1 227 4.58e-149 416
Msa0146610 AT3G53870.1 92.166 217 17 0 1 217 1 217 1.53e-148 414

Find 86 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGGGTGTTCTTGGTATTA+AGG 0.259759 1_4:-6298511 Msa0146610:intron
TTAGGACCTTGCTTTCCTTT+AGG 0.279269 1_4:+6298465 None:intergenic
GGATGGATGGATGTTTATAT+AGG 0.304609 1_4:+6299456 None:intergenic
AGGCATGTTCTAAGAGTATA+TGG 0.307014 1_4:-6298081 Msa0146610:three_prime_UTR
TAATACACGGGAGGAAATTA+TGG 0.314729 1_4:+6298151 None:intergenic
GCTATTCCGGTGTTGAGGTT+AGG 0.315077 1_4:-6299136 Msa0146610:CDS
CTTGCTGAAGATGGCTATTC+CGG 0.326131 1_4:-6299149 Msa0146610:CDS
TCCCCTGTTGTTAACCTTCT+CGG 0.326817 1_4:+6298874 None:intergenic
CGGTGTGTTGAGGTTTGTTA+TGG 0.332791 1_4:-6298777 Msa0146610:CDS
CATGTTTGCAGATTTAGCTT+GGG 0.336587 1_4:+6299354 None:intergenic
AAACCTCAACACACCGTAAC+AGG 0.355716 1_4:+6298784 None:intergenic
CTCATCTGGCCAACCTGTTA+AGG 0.357556 1_4:-6298663 Msa0146610:CDS
GAAACTGCAAACCCTAGTTT+TGG 0.367479 1_4:+6299421 None:intergenic
ATGTACTCTTCCTCCTCCTT+TGG 0.368666 1_4:+6298408 None:intergenic
GTAGCCATCCTTGAACTTCA+TGG 0.370346 1_4:+6298691 None:intergenic
CTATTCCGGTGTTGAGGTTA+GGG 0.371348 1_4:-6299135 Msa0146610:CDS
GATGGATGGATGTTTATATA+GGG 0.381464 1_4:+6299457 None:intergenic
CCATGTTTGCAGATTTAGCT+TGG 0.385717 1_4:+6299353 None:intergenic
GGATGTGAGGTTATTGTTAG+TGG 0.386156 1_4:-6298740 Msa0146610:CDS
CTAACCATTTCTCCAAAACT+AGG 0.397229 1_4:-6299433 Msa0146610:five_prime_UTR
GAGTCAATGTAATCCTTAAC+AGG 0.402767 1_4:+6298650 None:intergenic
CTCCTCCTTTGGAGTGTGAA+TGG 0.408543 1_4:+6298419 None:intergenic
ATCCTTGAACTTCATGGACT+TGG 0.424680 1_4:+6298697 None:intergenic
AACTGAGTATAACATTATCT+TGG 0.425457 1_4:+6298209 None:intergenic
GTGTGAATGGTAACAATATC+AGG 0.428011 1_4:+6298432 None:intergenic
AGGTGAAGATTATGCTTGAC+TGG 0.432560 1_4:-6298491 Msa0146610:CDS
ACCAGAGAGCTTGCTGAAGA+TGG 0.438488 1_4:-6299158 Msa0146610:CDS
ACTCGTACCCAAGCTGTTCT+CGG 0.438888 1_4:-6299077 Msa0146610:intron
TCTCTTCGTTACAAGCTTCT+CGG 0.453319 1_4:-6298827 Msa0146610:CDS
ATGCCGAGAAGGTTAACAAC+AGG 0.456910 1_4:-6298877 Msa0146610:CDS
CAAACAACAGGGACTGGGAC+AGG 0.457728 1_4:+6298348 None:intergenic
AGGAGGAGGAAGAGTACATC+AGG 0.461009 1_4:-6298404 Msa0146610:CDS
GATGGCTACATGATCTCATC+TGG 0.466529 1_4:-6298677 Msa0146610:CDS
GAGAAATGGTTAGGGATGGA+TGG 0.468403 1_4:+6299443 None:intergenic
TTGAGGTTTGTTATGGAAAG+TGG 0.475116 1_4:-6298770 Msa0146610:CDS
TTTGGAGAAATGGTTAGGGA+TGG 0.483044 1_4:+6299439 None:intergenic
GATTAGGTGAGAAGGGAAGG+AGG 0.484267 1_4:-6298964 Msa0146610:intron
TATAGTTCAACACTGTTCTC+AGG 0.488325 1_4:+6298899 None:intergenic
GCCATCTTCAGCAAGCTCTC+TGG 0.491889 1_4:+6299157 None:intergenic
AGCCAAGTCCATGAAGTTCA+AGG 0.492737 1_4:-6298699 Msa0146610:CDS
AATTAATGATTAGGTGAGAA+GGG 0.493314 1_4:-6298971 Msa0146610:intron
TGTTATGGAAAGTGGTGCTA+AGG 0.499768 1_4:-6298762 Msa0146610:CDS
TAGACATGTTCTTCTCAGAC+AGG 0.500852 1_4:-6298621 Msa0146610:intron
TTGTTGCAGTTCGTCGCTGA+CGG 0.501712 1_4:-6299212 Msa0146610:intron
ATGTTTGCAGATTTAGCTTG+GGG 0.508108 1_4:+6299355 None:intergenic
AATGATTAGGTGAGAAGGGA+AGG 0.513264 1_4:-6298967 Msa0146610:intron
TGACCTCAGTAGTCCAGAAA+AGG 0.517945 1_4:-6298931 Msa0146610:CDS
CTACGAACCGAGAACAGCTT+GGG 0.520711 1_4:+6299070 None:intergenic
CCAAGCTAAATCTGCAAACA+TGG 0.522664 1_4:-6299353 Msa0146610:exon
GATGATGATCTCAGTGCGCA+TGG 0.527229 1_4:+6299106 None:intergenic
TCATTTGCAACAACAGCAGC+AGG 0.528096 1_4:+6298381 None:intergenic
TAACCATTTCTCCAAAACTA+GGG 0.529900 1_4:-6299432 Msa0146610:five_prime_UTR
TTTCTTCGCTGAATTGAATG+AGG 0.530015 1_4:-6299186 Msa0146610:CDS
AATGGTAACAATATCAGGTA+GGG 0.532486 1_4:+6298437 None:intergenic
TAAGATGTAAATATTAGATA+AGG 0.537093 1_4:+6298124 None:intergenic
ACTACGAACCGAGAACAGCT+TGG 0.552773 1_4:+6299069 None:intergenic
GAGCCTGTTACGGTGTGTTG+AGG 0.556363 1_4:-6298787 Msa0146610:CDS
ATGCTTGACTGGGATCCTAA+AGG 0.556783 1_4:-6298480 Msa0146610:CDS
TGTTGTTGCAAATGATATTG+AGG 0.562213 1_4:-6298373 Msa0146610:CDS
TTTCTCAAACAACAGGGACT+GGG 0.568525 1_4:+6298343 None:intergenic
GTTATGGAAAGTGGTGCTAA+GGG 0.582081 1_4:-6298761 Msa0146610:CDS
GAATGGTAACAATATCAGGT+AGG 0.585408 1_4:+6298436 None:intergenic
AGATGGCTATTCCGGTGTTG+AGG 0.587442 1_4:-6299141 Msa0146610:CDS
GAATTAATGATTAGGTGAGA+AGG 0.589593 1_4:-6298972 Msa0146610:intron
GCTGTACGCAGAGCCTGTTA+CGG 0.590235 1_4:-6298797 Msa0146610:CDS
CAATGTAATCCTTAACAGGT+TGG 0.596885 1_4:+6298654 None:intergenic
TGGGATCCTAAAGGAAAGCA+AGG 0.601952 1_4:-6298471 Msa0146610:CDS
GGTGAAGATTATGCTTGACT+GGG 0.603451 1_4:-6298490 Msa0146610:CDS
AAACAACAGGGACTGGGACA+GGG 0.607283 1_4:+6298349 None:intergenic
GGATGGATGTTTATATAGGG+TGG 0.612338 1_4:+6299460 None:intergenic
TGTTGAACTATATGCCGAGA+AGG 0.615665 1_4:-6298888 Msa0146610:CDS
TACCATTCACACTCCAAAGG+AGG 0.618529 1_4:-6298421 Msa0146610:CDS
CATTCACACTCCAAAGGAGG+AGG 0.623248 1_4:-6298418 Msa0146610:CDS
ATGGTAACAATATCAGGTAG+GGG 0.623679 1_4:+6298438 None:intergenic
TGTTACCATTCACACTCCAA+AGG 0.627045 1_4:-6298424 Msa0146610:CDS
AAGTCCATGAAGTTCAAGGA+TGG 0.640546 1_4:-6298695 Msa0146610:CDS
ATGATGATCTCAGTGCGCAT+GGG 0.667262 1_4:+6299107 None:intergenic
AAGTGGTGCTAAGGGATGTG+AGG 0.670962 1_4:-6298753 Msa0146610:CDS
CTTCGTTACAAGCTTCTCGG+AGG 0.671532 1_4:-6298824 Msa0146610:CDS
TGCCGAGAAGGTTAACAACA+GGG 0.674234 1_4:-6298876 Msa0146610:CDS
AGATAAGGAACATAATACAC+GGG 0.677461 1_4:+6298139 None:intergenic
TAAGGAACATAATACACGGG+AGG 0.680426 1_4:+6298142 None:intergenic
AGTAACCCTAACCTCAACAC+CGG 0.681090 1_4:+6299130 None:intergenic
GCCGAGAAGGTTAACAACAG+GGG 0.682645 1_4:-6298875 Msa0146610:CDS
TGTTTGCAGATTTAGCTTGG+GGG 0.686534 1_4:+6299356 None:intergenic
TAGATAAGGAACATAATACA+CGG 0.690016 1_4:+6298138 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTTATATGAATTTAAA+TGG - chr1_4:6298468-6298487 Msa0146610:CDS 10.0%
!!! TTGTTTTATATGAATTTAAA+TGG - chr1_4:6298468-6298487 Msa0146610:CDS 10.0%
!! TGATTTATGAATTAATGATT+AGG - chr1_4:6298498-6298517 Msa0146610:CDS 15.0%
!!! ATTATTACCTTTATTTTGTA+GGG - chr1_4:6298950-6298969 Msa0146610:CDS 15.0%
!! TAAGATGTAAATATTAGATA+AGG + chr1_4:6299357-6299376 None:intergenic 15.0%
!! TGATTTATGAATTAATGATT+AGG - chr1_4:6298498-6298517 Msa0146610:CDS 15.0%
!!! ATTATTACCTTTATTTTGTA+GGG - chr1_4:6298950-6298969 Msa0146610:CDS 15.0%
!! TAAGATGTAAATATTAGATA+AGG + chr1_4:6299357-6299376 None:intergenic 15.0%
!!! GATTATTACCTTTATTTTGT+AGG - chr1_4:6298949-6298968 Msa0146610:CDS 20.0%
!!! TATATGGATTTTTGCATATT+TGG - chr1_4:6299413-6299432 Msa0146610:five_prime_UTR 20.0%
!!! GATTATTACCTTTATTTTGT+AGG - chr1_4:6298949-6298968 Msa0146610:CDS 20.0%
!!! TATATGGATTTTTGCATATT+TGG - chr1_4:6299413-6299432 Msa0146610:five_prime_UTR 20.0%
! AATTAATGATTAGGTGAGAA+GGG - chr1_4:6298507-6298526 Msa0146610:CDS 25.0%
!! AAACATTTTCTCAAACAACA+GGG + chr1_4:6299144-6299163 None:intergenic 25.0%
!! AAAACATTTTCTCAAACAAC+AGG + chr1_4:6299145-6299164 None:intergenic 25.0%
! AACTGAGTATAACATTATCT+TGG + chr1_4:6299272-6299291 None:intergenic 25.0%
! TAGATAAGGAACATAATACA+CGG + chr1_4:6299343-6299362 None:intergenic 25.0%
!!! GTTTTGTTGATGATATATTG+AGG - chr1_4:6299377-6299396 Msa0146610:five_prime_UTR 25.0%
! AATTAATGATTAGGTGAGAA+GGG - chr1_4:6298507-6298526 Msa0146610:CDS 25.0%
!! AAACATTTTCTCAAACAACA+GGG + chr1_4:6299144-6299163 None:intergenic 25.0%
!! AAAACATTTTCTCAAACAAC+AGG + chr1_4:6299145-6299164 None:intergenic 25.0%
! AACTGAGTATAACATTATCT+TGG + chr1_4:6299272-6299291 None:intergenic 25.0%
! TAGATAAGGAACATAATACA+CGG + chr1_4:6299343-6299362 None:intergenic 25.0%
!!! GTTTTGTTGATGATATATTG+AGG - chr1_4:6299377-6299396 Msa0146610:five_prime_UTR 25.0%
GATGGATGGATGTTTATATA+GGG + chr1_4:6298024-6298043 None:intergenic 30.0%
!!! TAGTTTTGGAGAAATGGTTA+GGG + chr1_4:6298046-6298065 None:intergenic 30.0%
TAACCATTTCTCCAAAACTA+GGG - chr1_4:6298046-6298065 Msa0146610:three_prime_UTR 30.0%
CACTACTAATAGAGATGAAT+TGG + chr1_4:6298205-6298224 None:intergenic 30.0%
GAATTAATGATTAGGTGAGA+AGG - chr1_4:6298506-6298525 Msa0146610:CDS 30.0%
AAACCAACAAGGTTGTTATA+GGG + chr1_4:6298895-6298914 None:intergenic 30.0%
AATAACAAACCAAACCAACA+AGG + chr1_4:6298906-6298925 None:intergenic 30.0%
AAGAACACCCTACAAAATAA+AGG + chr1_4:6298960-6298979 None:intergenic 30.0%
!!! TTTATTTTGTAGGGTGTTCT+TGG - chr1_4:6298959-6298978 Msa0146610:CDS 30.0%
AATGGTAACAATATCAGGTA+GGG + chr1_4:6299044-6299063 None:intergenic 30.0%
TGTTGTTGCAAATGATATTG+AGG - chr1_4:6299105-6299124 Msa0146610:CDS 30.0%
!! GAGAAAATGTTTTGAGTGTA+TGG - chr1_4:6299152-6299171 Msa0146610:CDS 30.0%
! TGTCAGACTTTTGTAGTTTT+CGG - chr1_4:6299205-6299224 Msa0146610:CDS 30.0%
AGATAAGGAACATAATACAC+GGG + chr1_4:6299342-6299361 None:intergenic 30.0%
GATGGATGGATGTTTATATA+GGG + chr1_4:6298024-6298043 None:intergenic 30.0%
!!! TAGTTTTGGAGAAATGGTTA+GGG + chr1_4:6298046-6298065 None:intergenic 30.0%
TAACCATTTCTCCAAAACTA+GGG - chr1_4:6298046-6298065 Msa0146610:three_prime_UTR 30.0%
CACTACTAATAGAGATGAAT+TGG + chr1_4:6298205-6298224 None:intergenic 30.0%
GAATTAATGATTAGGTGAGA+AGG - chr1_4:6298506-6298525 Msa0146610:CDS 30.0%
AAACCAACAAGGTTGTTATA+GGG + chr1_4:6298895-6298914 None:intergenic 30.0%
AATAACAAACCAAACCAACA+AGG + chr1_4:6298906-6298925 None:intergenic 30.0%
AAGAACACCCTACAAAATAA+AGG + chr1_4:6298960-6298979 None:intergenic 30.0%
!!! TTTATTTTGTAGGGTGTTCT+TGG - chr1_4:6298959-6298978 Msa0146610:CDS 30.0%
AATGGTAACAATATCAGGTA+GGG + chr1_4:6299044-6299063 None:intergenic 30.0%
TGTTGTTGCAAATGATATTG+AGG - chr1_4:6299105-6299124 Msa0146610:CDS 30.0%
!! GAGAAAATGTTTTGAGTGTA+TGG - chr1_4:6299152-6299171 Msa0146610:CDS 30.0%
! TGTCAGACTTTTGTAGTTTT+CGG - chr1_4:6299205-6299224 Msa0146610:CDS 30.0%
AGATAAGGAACATAATACAC+GGG + chr1_4:6299342-6299361 None:intergenic 30.0%
GGATGGATGGATGTTTATAT+AGG + chr1_4:6298025-6298044 None:intergenic 35.0%
!!! CTAGTTTTGGAGAAATGGTT+AGG + chr1_4:6298047-6298066 None:intergenic 35.0%
CTAACCATTTCTCCAAAACT+AGG - chr1_4:6298045-6298064 Msa0146610:three_prime_UTR 35.0%
!!! AAACCCTAGTTTTGGAGAAA+TGG + chr1_4:6298052-6298071 None:intergenic 35.0%
!! ATGTTTGCAGATTTAGCTTG+GGG + chr1_4:6298126-6298145 None:intergenic 35.0%
! CATGTTTGCAGATTTAGCTT+GGG + chr1_4:6298127-6298146 None:intergenic 35.0%
!!! CTTTCGCTTTTTGCTCATTT+GGG + chr1_4:6298154-6298173 None:intergenic 35.0%
TTTCTTCGCTGAATTGAATG+AGG - chr1_4:6298292-6298311 Msa0146610:three_prime_UTR 35.0%
! CAGGAAACTTAAACCTTTTC+TGG + chr1_4:6298563-6298582 None:intergenic 35.0%
TATAGTTCAACACTGTTCTC+AGG + chr1_4:6298582-6298601 None:intergenic 35.0%
!! TTGAGGTTTGTTATGGAAAG+TGG - chr1_4:6298708-6298727 Msa0146610:CDS 35.0%
CAATGTAATCCTTAACAGGT+TGG + chr1_4:6298827-6298846 None:intergenic 35.0%
GAGTCAATGTAATCCTTAAC+AGG + chr1_4:6298831-6298850 None:intergenic 35.0%
TTACCCTATAACAACCTTGT+TGG - chr1_4:6298889-6298908 Msa0146610:CDS 35.0%
CAAACCAACAAGGTTGTTAT+AGG + chr1_4:6298896-6298915 None:intergenic 35.0%
! CTATAACAACCTTGTTGGTT+TGG - chr1_4:6298894-6298913 Msa0146610:CDS 35.0%
ATGGTAACAATATCAGGTAG+GGG + chr1_4:6299043-6299062 None:intergenic 35.0%
GAATGGTAACAATATCAGGT+AGG + chr1_4:6299045-6299064 None:intergenic 35.0%
GTGTGAATGGTAACAATATC+AGG + chr1_4:6299049-6299068 None:intergenic 35.0%
TAATACACGGGAGGAAATTA+TGG + chr1_4:6299330-6299349 None:intergenic 35.0%
!! AGGCATGTTCTAAGAGTATA+TGG - chr1_4:6299397-6299416 Msa0146610:five_prime_UTR 35.0%
GGATGGATGGATGTTTATAT+AGG + chr1_4:6298025-6298044 None:intergenic 35.0%
!!! CTAGTTTTGGAGAAATGGTT+AGG + chr1_4:6298047-6298066 None:intergenic 35.0%
CTAACCATTTCTCCAAAACT+AGG - chr1_4:6298045-6298064 Msa0146610:three_prime_UTR 35.0%
!!! AAACCCTAGTTTTGGAGAAA+TGG + chr1_4:6298052-6298071 None:intergenic 35.0%
!! ATGTTTGCAGATTTAGCTTG+GGG + chr1_4:6298126-6298145 None:intergenic 35.0%
! CATGTTTGCAGATTTAGCTT+GGG + chr1_4:6298127-6298146 None:intergenic 35.0%
!!! CTTTCGCTTTTTGCTCATTT+GGG + chr1_4:6298154-6298173 None:intergenic 35.0%
TTTCTTCGCTGAATTGAATG+AGG - chr1_4:6298292-6298311 Msa0146610:three_prime_UTR 35.0%
! CAGGAAACTTAAACCTTTTC+TGG + chr1_4:6298563-6298582 None:intergenic 35.0%
TATAGTTCAACACTGTTCTC+AGG + chr1_4:6298582-6298601 None:intergenic 35.0%
!! TTGAGGTTTGTTATGGAAAG+TGG - chr1_4:6298708-6298727 Msa0146610:CDS 35.0%
CAATGTAATCCTTAACAGGT+TGG + chr1_4:6298827-6298846 None:intergenic 35.0%
GAGTCAATGTAATCCTTAAC+AGG + chr1_4:6298831-6298850 None:intergenic 35.0%
TTACCCTATAACAACCTTGT+TGG - chr1_4:6298889-6298908 Msa0146610:CDS 35.0%
CAAACCAACAAGGTTGTTAT+AGG + chr1_4:6298896-6298915 None:intergenic 35.0%
! CTATAACAACCTTGTTGGTT+TGG - chr1_4:6298894-6298913 Msa0146610:CDS 35.0%
ATGGTAACAATATCAGGTAG+GGG + chr1_4:6299043-6299062 None:intergenic 35.0%
GAATGGTAACAATATCAGGT+AGG + chr1_4:6299045-6299064 None:intergenic 35.0%
GTGTGAATGGTAACAATATC+AGG + chr1_4:6299049-6299068 None:intergenic 35.0%
TAATACACGGGAGGAAATTA+TGG + chr1_4:6299330-6299349 None:intergenic 35.0%
!! AGGCATGTTCTAAGAGTATA+TGG - chr1_4:6299397-6299416 Msa0146610:five_prime_UTR 35.0%
GGATGGATGTTTATATAGGG+TGG + chr1_4:6298021-6298040 None:intergenic 40.0%
TTTGGAGAAATGGTTAGGGA+TGG + chr1_4:6298042-6298061 None:intergenic 40.0%
! GAAACTGCAAACCCTAGTTT+TGG + chr1_4:6298060-6298079 None:intergenic 40.0%
!! TGTTTGCAGATTTAGCTTGG+GGG + chr1_4:6298125-6298144 None:intergenic 40.0%
CCATGTTTGCAGATTTAGCT+TGG + chr1_4:6298128-6298147 None:intergenic 40.0%
CCAAGCTAAATCTGCAAACA+TGG - chr1_4:6298125-6298144 Msa0146610:three_prime_UTR 40.0%
!!! CCTTTCGCTTTTTGCTCATT+TGG + chr1_4:6298155-6298174 None:intergenic 40.0%
CCAAATGAGCAAAAAGCGAA+AGG - chr1_4:6298152-6298171 Msa0146610:three_prime_UTR 40.0%
AATGATTAGGTGAGAAGGGA+AGG - chr1_4:6298511-6298530 Msa0146610:intron 40.0%
! AAACCTTTTCTGGACTACTG+AGG + chr1_4:6298553-6298572 None:intergenic 40.0%
TGTTGAACTATATGCCGAGA+AGG - chr1_4:6298590-6298609 Msa0146610:intron 40.0%
TCTCTTCGTTACAAGCTTCT+CGG - chr1_4:6298651-6298670 Msa0146610:CDS 40.0%
! TGTTATGGAAAGTGGTGCTA+AGG - chr1_4:6298716-6298735 Msa0146610:CDS 40.0%
! GTTATGGAAAGTGGTGCTAA+GGG - chr1_4:6298717-6298736 Msa0146610:CDS 40.0%
GGATGTGAGGTTATTGTTAG+TGG - chr1_4:6298738-6298757 Msa0146610:CDS 40.0%
ATCCTTGAACTTCATGGACT+TGG + chr1_4:6298784-6298803 None:intergenic 40.0%
AAGTCCATGAAGTTCAAGGA+TGG - chr1_4:6298783-6298802 Msa0146610:CDS 40.0%
TAGACATGTTCTTCTCAGAC+AGG - chr1_4:6298857-6298876 Msa0146610:CDS 40.0%
! GTAGGGTGTTCTTGGTATTA+AGG - chr1_4:6298967-6298986 Msa0146610:intron 40.0%
AGGTGAAGATTATGCTTGAC+TGG - chr1_4:6298987-6299006 Msa0146610:intron 40.0%
GGTGAAGATTATGCTTGACT+GGG - chr1_4:6298988-6299007 Msa0146610:intron 40.0%
TTAGGACCTTGCTTTCCTTT+AGG + chr1_4:6299016-6299035 None:intergenic 40.0%
! ATATCAGGTAGGGGAGTTTT+AGG + chr1_4:6299034-6299053 None:intergenic 40.0%
TGTTACCATTCACACTCCAA+AGG - chr1_4:6299054-6299073 Msa0146610:intron 40.0%
TTTCTCAAACAACAGGGACT+GGG + chr1_4:6299138-6299157 None:intergenic 40.0%
! TTTTCTCAAACAACAGGGAC+TGG + chr1_4:6299139-6299158 None:intergenic 40.0%
TAAGGAACATAATACACGGG+AGG + chr1_4:6299339-6299358 None:intergenic 40.0%
GGATGGATGTTTATATAGGG+TGG + chr1_4:6298021-6298040 None:intergenic 40.0%
TTTGGAGAAATGGTTAGGGA+TGG + chr1_4:6298042-6298061 None:intergenic 40.0%
! GAAACTGCAAACCCTAGTTT+TGG + chr1_4:6298060-6298079 None:intergenic 40.0%
!! TGTTTGCAGATTTAGCTTGG+GGG + chr1_4:6298125-6298144 None:intergenic 40.0%
CCATGTTTGCAGATTTAGCT+TGG + chr1_4:6298128-6298147 None:intergenic 40.0%
CCAAGCTAAATCTGCAAACA+TGG - chr1_4:6298125-6298144 Msa0146610:three_prime_UTR 40.0%
!!! CCTTTCGCTTTTTGCTCATT+TGG + chr1_4:6298155-6298174 None:intergenic 40.0%
CCAAATGAGCAAAAAGCGAA+AGG - chr1_4:6298152-6298171 Msa0146610:three_prime_UTR 40.0%
AATGATTAGGTGAGAAGGGA+AGG - chr1_4:6298511-6298530 Msa0146610:intron 40.0%
! AAACCTTTTCTGGACTACTG+AGG + chr1_4:6298553-6298572 None:intergenic 40.0%
TGTTGAACTATATGCCGAGA+AGG - chr1_4:6298590-6298609 Msa0146610:intron 40.0%
TCTCTTCGTTACAAGCTTCT+CGG - chr1_4:6298651-6298670 Msa0146610:CDS 40.0%
! TGTTATGGAAAGTGGTGCTA+AGG - chr1_4:6298716-6298735 Msa0146610:CDS 40.0%
! GTTATGGAAAGTGGTGCTAA+GGG - chr1_4:6298717-6298736 Msa0146610:CDS 40.0%
GGATGTGAGGTTATTGTTAG+TGG - chr1_4:6298738-6298757 Msa0146610:CDS 40.0%
ATCCTTGAACTTCATGGACT+TGG + chr1_4:6298784-6298803 None:intergenic 40.0%
AAGTCCATGAAGTTCAAGGA+TGG - chr1_4:6298783-6298802 Msa0146610:CDS 40.0%
TAGACATGTTCTTCTCAGAC+AGG - chr1_4:6298857-6298876 Msa0146610:CDS 40.0%
! GTAGGGTGTTCTTGGTATTA+AGG - chr1_4:6298967-6298986 Msa0146610:intron 40.0%
AGGTGAAGATTATGCTTGAC+TGG - chr1_4:6298987-6299006 Msa0146610:intron 40.0%
GGTGAAGATTATGCTTGACT+GGG - chr1_4:6298988-6299007 Msa0146610:intron 40.0%
TTAGGACCTTGCTTTCCTTT+AGG + chr1_4:6299016-6299035 None:intergenic 40.0%
! ATATCAGGTAGGGGAGTTTT+AGG + chr1_4:6299034-6299053 None:intergenic 40.0%
TGTTACCATTCACACTCCAA+AGG - chr1_4:6299054-6299073 Msa0146610:intron 40.0%
TTTCTCAAACAACAGGGACT+GGG + chr1_4:6299138-6299157 None:intergenic 40.0%
! TTTTCTCAAACAACAGGGAC+TGG + chr1_4:6299139-6299158 None:intergenic 40.0%
TAAGGAACATAATACACGGG+AGG + chr1_4:6299339-6299358 None:intergenic 40.0%
GAGAAATGGTTAGGGATGGA+TGG + chr1_4:6298038-6298057 None:intergenic 45.0%
CTTGCTGAAGATGGCTATTC+CGG - chr1_4:6298329-6298348 Msa0146610:exon 45.0%
! CTATTCCGGTGTTGAGGTTA+GGG - chr1_4:6298343-6298362 Msa0146610:exon 45.0%
AGTAACCCTAACCTCAACAC+CGG + chr1_4:6298351-6298370 None:intergenic 45.0%
ATGATGATCTCAGTGCGCAT+GGG + chr1_4:6298374-6298393 None:intergenic 45.0%
TGACCTCAGTAGTCCAGAAA+AGG - chr1_4:6298547-6298566 Msa0146610:intron 45.0%
ATGCCGAGAAGGTTAACAAC+AGG - chr1_4:6298601-6298620 Msa0146610:intron 45.0%
TGCCGAGAAGGTTAACAACA+GGG - chr1_4:6298602-6298621 Msa0146610:intron 45.0%
TCCCCTGTTGTTAACCTTCT+CGG + chr1_4:6298607-6298626 None:intergenic 45.0%
AAACCTCAACACACCGTAAC+AGG + chr1_4:6298697-6298716 None:intergenic 45.0%
!! CGGTGTGTTGAGGTTTGTTA+TGG - chr1_4:6298701-6298720 Msa0146610:CDS 45.0%
AGCCAAGTCCATGAAGTTCA+AGG - chr1_4:6298779-6298798 Msa0146610:CDS 45.0%
GTAGCCATCCTTGAACTTCA+TGG + chr1_4:6298790-6298809 None:intergenic 45.0%
GATGGCTACATGATCTCATC+TGG - chr1_4:6298801-6298820 Msa0146610:CDS 45.0%
ATGCTTGACTGGGATCCTAA+AGG - chr1_4:6298998-6299017 Msa0146610:intron 45.0%
TGGGATCCTAAAGGAAAGCA+AGG - chr1_4:6299007-6299026 Msa0146610:intron 45.0%
TACCATTCACACTCCAAAGG+AGG - chr1_4:6299057-6299076 Msa0146610:intron 45.0%
ATGTACTCTTCCTCCTCCTT+TGG + chr1_4:6299073-6299092 None:intergenic 45.0%
TCATTTGCAACAACAGCAGC+AGG + chr1_4:6299100-6299119 None:intergenic 45.0%
GAGAAATGGTTAGGGATGGA+TGG + chr1_4:6298038-6298057 None:intergenic 45.0%
CTTGCTGAAGATGGCTATTC+CGG - chr1_4:6298329-6298348 Msa0146610:exon 45.0%
! CTATTCCGGTGTTGAGGTTA+GGG - chr1_4:6298343-6298362 Msa0146610:exon 45.0%
AGTAACCCTAACCTCAACAC+CGG + chr1_4:6298351-6298370 None:intergenic 45.0%
ATGATGATCTCAGTGCGCAT+GGG + chr1_4:6298374-6298393 None:intergenic 45.0%
TGACCTCAGTAGTCCAGAAA+AGG - chr1_4:6298547-6298566 Msa0146610:intron 45.0%
ATGCCGAGAAGGTTAACAAC+AGG - chr1_4:6298601-6298620 Msa0146610:intron 45.0%
TGCCGAGAAGGTTAACAACA+GGG - chr1_4:6298602-6298621 Msa0146610:intron 45.0%
TCCCCTGTTGTTAACCTTCT+CGG + chr1_4:6298607-6298626 None:intergenic 45.0%
AAACCTCAACACACCGTAAC+AGG + chr1_4:6298697-6298716 None:intergenic 45.0%
!! CGGTGTGTTGAGGTTTGTTA+TGG - chr1_4:6298701-6298720 Msa0146610:CDS 45.0%
AGCCAAGTCCATGAAGTTCA+AGG - chr1_4:6298779-6298798 Msa0146610:CDS 45.0%
GTAGCCATCCTTGAACTTCA+TGG + chr1_4:6298790-6298809 None:intergenic 45.0%
GATGGCTACATGATCTCATC+TGG - chr1_4:6298801-6298820 Msa0146610:CDS 45.0%
ATGCTTGACTGGGATCCTAA+AGG - chr1_4:6298998-6299017 Msa0146610:intron 45.0%
TGGGATCCTAAAGGAAAGCA+AGG - chr1_4:6299007-6299026 Msa0146610:intron 45.0%
TACCATTCACACTCCAAAGG+AGG - chr1_4:6299057-6299076 Msa0146610:intron 45.0%
ATGTACTCTTCCTCCTCCTT+TGG + chr1_4:6299073-6299092 None:intergenic 45.0%
TCATTTGCAACAACAGCAGC+AGG + chr1_4:6299100-6299119 None:intergenic 45.0%
!! TTGCAGATTTAGCTTGGGGG+CGG + chr1_4:6298122-6298141 None:intergenic 50.0%
TTGTTGCAGTTCGTCGCTGA+CGG - chr1_4:6298266-6298285 Msa0146610:three_prime_UTR 50.0%
!! ACCAGAGAGCTTGCTGAAGA+TGG - chr1_4:6298320-6298339 Msa0146610:three_prime_UTR 50.0%
! AGATGGCTATTCCGGTGTTG+AGG - chr1_4:6298337-6298356 Msa0146610:exon 50.0%
! GCTATTCCGGTGTTGAGGTT+AGG - chr1_4:6298342-6298361 Msa0146610:exon 50.0%
GATGATGATCTCAGTGCGCA+TGG + chr1_4:6298375-6298394 None:intergenic 50.0%
ACTCGTACCCAAGCTGTTCT+CGG - chr1_4:6298401-6298420 Msa0146610:CDS 50.0%
CTACGAACCGAGAACAGCTT+GGG + chr1_4:6298411-6298430 None:intergenic 50.0%
ACTACGAACCGAGAACAGCT+TGG + chr1_4:6298412-6298431 None:intergenic 50.0%
GATTAGGTGAGAAGGGAAGG+AGG - chr1_4:6298514-6298533 Msa0146610:intron 50.0%
GCCGAGAAGGTTAACAACAG+GGG - chr1_4:6298603-6298622 Msa0146610:intron 50.0%
CTTCGTTACAAGCTTCTCGG+AGG - chr1_4:6298654-6298673 Msa0146610:CDS 50.0%
! AAGTGGTGCTAAGGGATGTG+AGG - chr1_4:6298725-6298744 Msa0146610:CDS 50.0%
CTCATCTGGCCAACCTGTTA+AGG - chr1_4:6298815-6298834 Msa0146610:CDS 50.0%
!! CTCCTCCTTTGGAGTGTGAA+TGG + chr1_4:6299062-6299081 None:intergenic 50.0%
CATTCACACTCCAAAGGAGG+AGG - chr1_4:6299060-6299079 Msa0146610:intron 50.0%
! AGGAGGAGGAAGAGTACATC+AGG - chr1_4:6299074-6299093 Msa0146610:intron 50.0%
AAACAACAGGGACTGGGACA+GGG + chr1_4:6299132-6299151 None:intergenic 50.0%
!! TTGCAGATTTAGCTTGGGGG+CGG + chr1_4:6298122-6298141 None:intergenic 50.0%
TTGTTGCAGTTCGTCGCTGA+CGG - chr1_4:6298266-6298285 Msa0146610:three_prime_UTR 50.0%
!! ACCAGAGAGCTTGCTGAAGA+TGG - chr1_4:6298320-6298339 Msa0146610:three_prime_UTR 50.0%
! AGATGGCTATTCCGGTGTTG+AGG - chr1_4:6298337-6298356 Msa0146610:exon 50.0%
! GCTATTCCGGTGTTGAGGTT+AGG - chr1_4:6298342-6298361 Msa0146610:exon 50.0%
GATGATGATCTCAGTGCGCA+TGG + chr1_4:6298375-6298394 None:intergenic 50.0%
ACTCGTACCCAAGCTGTTCT+CGG - chr1_4:6298401-6298420 Msa0146610:CDS 50.0%
CTACGAACCGAGAACAGCTT+GGG + chr1_4:6298411-6298430 None:intergenic 50.0%
ACTACGAACCGAGAACAGCT+TGG + chr1_4:6298412-6298431 None:intergenic 50.0%
GATTAGGTGAGAAGGGAAGG+AGG - chr1_4:6298514-6298533 Msa0146610:intron 50.0%
GCCGAGAAGGTTAACAACAG+GGG - chr1_4:6298603-6298622 Msa0146610:intron 50.0%
CTTCGTTACAAGCTTCTCGG+AGG - chr1_4:6298654-6298673 Msa0146610:CDS 50.0%
! AAGTGGTGCTAAGGGATGTG+AGG - chr1_4:6298725-6298744 Msa0146610:CDS 50.0%
CTCATCTGGCCAACCTGTTA+AGG - chr1_4:6298815-6298834 Msa0146610:CDS 50.0%
!! CTCCTCCTTTGGAGTGTGAA+TGG + chr1_4:6299062-6299081 None:intergenic 50.0%
CATTCACACTCCAAAGGAGG+AGG - chr1_4:6299060-6299079 Msa0146610:intron 50.0%
! AGGAGGAGGAAGAGTACATC+AGG - chr1_4:6299074-6299093 Msa0146610:intron 50.0%
AAACAACAGGGACTGGGACA+GGG + chr1_4:6299132-6299151 None:intergenic 50.0%
GCCATCTTCAGCAAGCTCTC+TGG + chr1_4:6298324-6298343 None:intergenic 55.0%
GCTGTACGCAGAGCCTGTTA+CGG - chr1_4:6298681-6298700 Msa0146610:CDS 55.0%
GAGCCTGTTACGGTGTGTTG+AGG - chr1_4:6298691-6298710 Msa0146610:CDS 55.0%
CAAACAACAGGGACTGGGAC+AGG + chr1_4:6299133-6299152 None:intergenic 55.0%
GCCATCTTCAGCAAGCTCTC+TGG + chr1_4:6298324-6298343 None:intergenic 55.0%
GCTGTACGCAGAGCCTGTTA+CGG - chr1_4:6298681-6298700 Msa0146610:CDS 55.0%
GAGCCTGTTACGGTGTGTTG+AGG - chr1_4:6298691-6298710 Msa0146610:CDS 55.0%
CAAACAACAGGGACTGGGAC+AGG + chr1_4:6299133-6299152 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 6298018 6299482 6298018 ID=Msa0146610;Name=Msa0146610
chr1_4 mRNA 6298018 6299482 6298018 ID=Msa0146610-mRNA-1;Parent=Msa0146610;Name=Msa0146610-mRNA-1;_AED=0.00;_eAED=0.00;_QI=126|1|1|1|1|1|4|329|239
chr1_4 exon 6298018 6298529 6298018 ID=Msa0146610-mRNA-1:exon:2793;Parent=Msa0146610-mRNA-1
chr1_4 exon 6298622 6298980 6298622 ID=Msa0146610-mRNA-1:exon:2792;Parent=Msa0146610-mRNA-1
chr1_4 exon 6299078 6299225 6299078 ID=Msa0146610-mRNA-1:exon:2791;Parent=Msa0146610-mRNA-1
chr1_4 exon 6299327 6299482 6299327 ID=Msa0146610-mRNA-1:exon:2790;Parent=Msa0146610-mRNA-1
chr1_4 five_prime_UTR 6299357 6299482 6299357 ID=Msa0146610-mRNA-1:five_prime_utr;Parent=Msa0146610-mRNA-1
chr1_4 CDS 6299327 6299356 6299327 ID=Msa0146610-mRNA-1:cds;Parent=Msa0146610-mRNA-1
chr1_4 CDS 6299078 6299225 6299078 ID=Msa0146610-mRNA-1:cds;Parent=Msa0146610-mRNA-1
chr1_4 CDS 6298622 6298980 6298622 ID=Msa0146610-mRNA-1:cds;Parent=Msa0146610-mRNA-1
chr1_4 CDS 6298347 6298529 6298347 ID=Msa0146610-mRNA-1:cds;Parent=Msa0146610-mRNA-1
chr1_4 three_prime_UTR 6298018 6298346 6298018 ID=Msa0146610-mRNA-1:three_prime_utr;Parent=Msa0146610-mRNA-1
Gene Sequence

>Msa0146610

ATGGCTACCCAAATGAGCAAAAAGCGAAAGTTCGTCGCTGACGGAGTTTTCTTCGCTGAATTGAATGAGGTTTTAACCAGAGAGCTTGCTGAAGATGGCTATTCCGGTGTTGAGGTTAGGGTTACTCCCATGCGCACTGAGATCATCATCAGAGCTACTCGTACCCAAGCTGTTCTCGGTGAGAAGGGAAGGAGGATCAGAGAACTGACCTCAGTAGTCCAGAAAAGGTTTAAGTTTCCTGAGAACAGTGTTGAACTATATGCCGAGAAGGTTAACAACAGGGGACTTTGTGCAATTGCACAAGCTGAGTCTCTTCGTTACAAGCTTCTCGGAGGTCTTGCTGTACGCAGAGCCTGTTACGGTGTGTTGAGGTTTGTTATGGAAAGTGGTGCTAAGGGATGTGAGGTTATTGTTAGTGGAAAATTGAGAGCACAAAGAGCCAAGTCCATGAAGTTCAAGGATGGCTACATGATCTCATCTGGCCAACCTGTTAAGGATTACATTGACTCTGCTGTTAGACATGTTCTTCTCAGACAGGGTGTTCTTGGTATTAAGGTGAAGATTATGCTTGACTGGGATCCTAAAGGAAAGCAAGGTCCTAAAACTCCCCTACCTGATATTGTTACCATTCACACTCCAAAGGAGGAGGAAGAGTACATCAGGCCTGCTGCTGTTGTTGCAAATGATATTGAGGTCCCTGTCCCAGTCCCTGTTGTTTGA

Protein sequence

>Msa0146610

MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEVPVPVPVV*