Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1151130 | XP_013449058.1 | 97.248 | 218 | 6 | 0 | 2 | 219 | 206 | 423 | 8.62e-154 | 443 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1151130 | sp|Q9Y2M2|SSUH2_HUMAN | 30.435 | 207 | 128 | 5 | 4 | 209 | 180 | 371 | 2.77e-19 | 88.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1151130 | A0A072UB64 | 97.248 | 218 | 6 | 0 | 2 | 219 | 206 | 423 | 4.12e-154 | 443 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020390 | Msa1151130 | 0.807475 | 4.963550e-50 | -8.615850e-47 |
| Msa0090550 | Msa1151130 | 0.807334 | 5.316783e-50 | -8.615850e-47 |
| Msa0604290 | Msa1151130 | 0.810989 | 8.761330e-51 | -8.615850e-47 |
| Msa0651560 | Msa1151130 | 0.800167 | 1.636627e-48 | -8.615850e-47 |
| Msa0682680 | Msa1151130 | 0.801853 | 7.401029e-49 | -8.615850e-47 |
| Msa0139670 | Msa1151130 | 0.800478 | 1.414404e-48 | -8.615850e-47 |
| Msa0382310 | Msa1151130 | 0.815551 | 8.725395e-52 | -8.615850e-47 |
| Msa0382370 | Msa1151130 | 0.805965 | 1.034615e-49 | -8.615850e-47 |
| Msa0385500 | Msa1151130 | 0.807636 | 4.589201e-50 | -8.615850e-47 |
| Msa0388730 | Msa1151130 | 0.807945 | 3.944294e-50 | -8.615850e-47 |
| Msa0389210 | Msa1151130 | 0.809689 | 1.670921e-50 | -8.615850e-47 |
| Msa0403770 | Msa1151130 | 0.811065 | 8.434307e-51 | -8.615850e-47 |
| Msa0431210 | Msa1151130 | 0.827917 | 1.200415e-54 | -8.615850e-47 |
| Msa1042660 | Msa1151130 | 0.802111 | 6.551212e-49 | -8.615850e-47 |
| Msa0257490 | Msa1151130 | 0.835730 | 1.415550e-56 | -8.615850e-47 |
| Msa0296790 | Msa1151130 | 0.810526 | 1.103473e-50 | -8.615850e-47 |
| Msa1151130 | Msa1178580 | 0.805290 | 1.433621e-49 | -8.615850e-47 |
| Msa1151130 | Msa1221330 | 0.800998 | 1.107590e-48 | -8.615850e-47 |
| Msa1151130 | Msa1248830 | 0.801367 | 9.309661e-49 | -8.615850e-47 |
| Msa1151130 | Msa1271130 | 0.807217 | 5.629735e-50 | -8.615850e-47 |
| Msa1151130 | Msa1276150 | 0.807165 | 5.775193e-50 | -8.615850e-47 |
| Msa0485710 | Msa1151130 | 0.805082 | 1.584783e-49 | -8.615850e-47 |
| Msa0520270 | Msa1151130 | 0.826082 | 3.296430e-54 | -8.615850e-47 |
| Msa0527540 | Msa1151130 | 0.817725 | 2.841320e-52 | -8.615850e-47 |
| Msa0527740 | Msa1151130 | 0.838130 | 3.452970e-57 | -8.615850e-47 |
| Msa0542560 | Msa1151130 | 0.808876 | 2.496937e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1151130 | MtrunA17_Chr7g0241151 | 97.248 | 218 | 6 | 0 | 2 | 219 | 206 | 423 | 7.93e-158 | 443 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1151130 | AT2G38000.1 | 72.936 | 218 | 59 | 0 | 2 | 219 | 202 | 419 | 1.62e-124 | 359 |
Find 53 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAACTCCTTTGGATCTA+TGG | 0.205179 | 7_4:-35339318 | None:intergenic |
| ATTGCATAATTCAACTCCTT+TGG | 0.331600 | 7_4:-35339326 | None:intergenic |
| GCAATGTAGTCATTATAAAA+TGG | 0.334240 | 7_4:+35337734 | Msa1151130:CDS |
| TTGGGGCTTGTGTCCTTGTT+TGG | 0.342743 | 7_4:+35339597 | Msa1151130:CDS |
| GTATTATCCATTGTCTTGTA+AGG | 0.348793 | 7_4:+35339746 | Msa1151130:three_prime_UTR |
| ACTCAGTGTCCTAGTTGTTA+TGG | 0.382433 | 7_4:+35337409 | Msa1151130:CDS |
| TGCAATGCTGATGGAGAACC+TGG | 0.418106 | 7_4:+35337364 | Msa1151130:CDS |
| ACATACAATCTCAGTTGTTC+CGG | 0.418682 | 7_4:+35339471 | Msa1151130:CDS |
| TCTTGTAAGGACTACAGTTA+TGG | 0.428415 | 7_4:+35339759 | Msa1151130:three_prime_UTR |
| GATCTATGGAAAACTTCATC+TGG | 0.432603 | 7_4:-35339304 | None:intergenic |
| GACATGGTGACACGAGTTAC+CGG | 0.435927 | 7_4:-35339490 | None:intergenic |
| TGGACATTATAAAGAAAATC+AGG | 0.436112 | 7_4:+35337384 | Msa1151130:CDS |
| TAAAGTGGGACCAGTGCAAC+TGG | 0.445304 | 7_4:+35339788 | Msa1151130:three_prime_UTR |
| TGGCAGGGAGGTTTACTTGA+AGG | 0.445862 | 7_4:+35339552 | Msa1151130:CDS |
| TTTATATTGTAGGAAATGGC+AGG | 0.455786 | 7_4:+35339536 | Msa1151130:CDS |
| TATTATTCAGAACAAACAAA+AGG | 0.471859 | 7_4:-35339676 | None:intergenic |
| GTGTCCTAGTTGTTATGGAA+GGG | 0.475063 | 7_4:+35337414 | Msa1151130:CDS |
| GGTTTGATTGCTCATAAAGA+TGG | 0.476633 | 7_4:+35337436 | Msa1151130:CDS |
| CTTAACTGTGAAACGTGTAA+TGG | 0.480057 | 7_4:+35337691 | Msa1151130:CDS |
| AAGCTTCCTTGTGCGACTTG+TGG | 0.485746 | 7_4:+35337655 | Msa1151130:CDS |
| TGTCCTAGTTGTTATGGAAG+GGG | 0.490801 | 7_4:+35337415 | Msa1151130:CDS |
| TAAGTATTCACCAGTTGCAC+TGG | 0.515841 | 7_4:-35339798 | None:intergenic |
| GTGTGAAATGTAATGGTAAA+GGG | 0.525645 | 7_4:+35337632 | Msa1151130:CDS |
| ATTATTCAGAACAAACAAAA+GGG | 0.526812 | 7_4:-35339675 | None:intergenic |
| TGTGTGAAATGTAATGGTAA+AGG | 0.528269 | 7_4:+35337631 | Msa1151130:CDS |
| CAAATGACTCTTGCAGTGGC+AGG | 0.534071 | 7_4:-35339442 | None:intergenic |
| GGAACATGCAAACAATATGT+AGG | 0.535666 | 7_4:-35339654 | None:intergenic |
| AGTGTCCTAGTTGTTATGGA+AGG | 0.551912 | 7_4:+35337413 | Msa1151130:CDS |
| CAGTTATGGATGAAATAAAG+TGG | 0.555844 | 7_4:+35339773 | Msa1151130:three_prime_UTR |
| TGCAGATGTGTGAAATGTAA+TGG | 0.564143 | 7_4:+35337625 | Msa1151130:intron |
| GCTTGTGTCCTTGTTTGGAG+TGG | 0.568621 | 7_4:+35339602 | Msa1151130:CDS |
| CGGAAAGTAAGTGCAACTAA+AGG | 0.571263 | 7_4:+35339268 | Msa1151130:CDS |
| ACTTTCAACCACTCCAAACA+AGG | 0.577559 | 7_4:-35339610 | None:intergenic |
| TGTGCGACTTGTGGATCTCG+TGG | 0.577723 | 7_4:+35337664 | Msa1151130:CDS |
| TGTGCTACTTGCAATGCTGA+TGG | 0.581570 | 7_4:+35337355 | Msa1151130:CDS |
| TCAGGTTGTGCCGGGCGAGG+AGG | 0.593663 | 7_4:+35337325 | Msa1151130:CDS |
| CTGTAGTCCTTACAAGACAA+TGG | 0.599861 | 7_4:-35339753 | None:intergenic |
| AAGCCCCAACAAAATCTAGA+GGG | 0.599965 | 7_4:-35339583 | None:intergenic |
| TGTGAAACGTGTAATGGAAG+TGG | 0.607659 | 7_4:+35337697 | Msa1151130:CDS |
| ACAGACTATTCCTCCTCGCC+CGG | 0.608323 | 7_4:-35337335 | None:intergenic |
| AAACCCCTTCCATAACAACT+AGG | 0.608898 | 7_4:-35337418 | None:intergenic |
| CGAGATCCACAAGTCGCACA+AGG | 0.611817 | 7_4:-35337661 | None:intergenic |
| TTATATTGTAGGAAATGGCA+GGG | 0.619271 | 7_4:+35339537 | Msa1151130:CDS |
| CTCACAAATGACTCTTGCAG+TGG | 0.628837 | 7_4:-35339446 | None:intergenic |
| GACAATGGATAATACAACAA+AGG | 0.632017 | 7_4:-35339738 | None:intergenic |
| ACAGGAAGACACTTTCAACT+CGG | 0.637607 | 7_4:+35339248 | Msa1151130:intron |
| AGTTATGGATGAAATAAAGT+GGG | 0.641592 | 7_4:+35339774 | Msa1151130:three_prime_UTR |
| AGTTGAATTATGCAATACAC+AGG | 0.652217 | 7_4:+35339333 | Msa1151130:CDS |
| CAAGCCCCAACAAAATCTAG+AGG | 0.660144 | 7_4:-35339584 | None:intergenic |
| AGTAAGTGCAACTAAAGGAG+CGG | 0.664827 | 7_4:+35339273 | Msa1151130:CDS |
| TATTGTAGGAAATGGCAGGG+AGG | 0.688512 | 7_4:+35339540 | Msa1151130:CDS |
| AGCCCCAACAAAATCTAGAG+GGG | 0.694268 | 7_4:-35339582 | None:intergenic |
| GGATTGTCGATGATGAGACA+TGG | 0.743182 | 7_4:-35339506 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACACATTTTTAAATAAAATA+TGG | - | chr7_4:35338317-35338336 | None:intergenic | 10.0% |
| !!! | TTAAACATAAAAGTATTTGA+TGG | - | chr7_4:35337989-35338008 | None:intergenic | 15.0% |
| !!! | GATATACATTCAAAATATTT+TGG | + | chr7_4:35338017-35338036 | Msa1151130:intron | 15.0% |
| !!! | ATAGTTTAATTTAAATAAGC+AGG | + | chr7_4:35338136-35338155 | Msa1151130:intron | 15.0% |
| !!! | TAGTTTAATTTAAATAAGCA+GGG | + | chr7_4:35338137-35338156 | Msa1151130:intron | 15.0% |
| !!! | CATTTTTAAATAAAATATGG+AGG | - | chr7_4:35338314-35338333 | None:intergenic | 15.0% |
| !! | GACTAAAAAAATAACATTTA+AGG | - | chr7_4:35339111-35339130 | None:intergenic | 15.0% |
| !! | ACTTTAGTATGTATATTTCA+AGG | + | chr7_4:35337917-35337936 | Msa1151130:intron | 20.0% |
| !! | ATATGATCTATCCTTAATTA+TGG | + | chr7_4:35338073-35338092 | Msa1151130:intron | 20.0% |
| !! | GTGATAGAGATAATAAATAA+AGG | - | chr7_4:35338288-35338307 | None:intergenic | 20.0% |
| !! | TTTAAATAAAATATGGAGGT+TGG | - | chr7_4:35338310-35338329 | None:intergenic | 20.0% |
| !! | TTGTTGATATATGTAGAAAA+AGG | - | chr7_4:35338576-35338595 | None:intergenic | 20.0% |
| !!! | GTTATATTATGTATGCTTTT+GGG | - | chr7_4:35338608-35338627 | None:intergenic | 20.0% |
| !!! | TGTTATATTATGTATGCTTT+TGG | - | chr7_4:35338609-35338628 | None:intergenic | 20.0% |
| !! | TTAACATTATATAGAGTTGA+TGG | + | chr7_4:35338912-35338931 | Msa1151130:intron | 20.0% |
| !! | AAAAAAAGAATCAGCAAAAA+AGG | - | chr7_4:35339377-35339396 | None:intergenic | 20.0% |
| !!! | AGTTTTTATATTGTAGGAAA+TGG | + | chr7_4:35339532-35339551 | Msa1151130:CDS | 20.0% |
| !! | ATTATTCAGAACAAACAAAA+GGG | - | chr7_4:35339678-35339697 | None:intergenic | 20.0% |
| !! | TATTATTCAGAACAAACAAA+AGG | - | chr7_4:35339679-35339698 | None:intergenic | 20.0% |
| !! | TGATTTTCTTTATAATGTCC+AGG | - | chr7_4:35337385-35337404 | None:intergenic | 25.0% |
| ! | TGGACATTATAAAGAAAATC+AGG | + | chr7_4:35337384-35337403 | Msa1151130:CDS | 25.0% |
| ! | TTCATTTGCTCATAAATAGA+AGG | + | chr7_4:35337479-35337498 | Msa1151130:intron | 25.0% |
| ! | GCAATGTAGTCATTATAAAA+TGG | + | chr7_4:35337734-35337753 | Msa1151130:CDS | 25.0% |
| ! | TTTGTCAAAAAGAAAGTTTG+AGG | - | chr7_4:35337851-35337870 | None:intergenic | 25.0% |
| !!! | ACATAAAAGTATTTGATGGA+TGG | - | chr7_4:35337985-35338004 | None:intergenic | 25.0% |
| ! | ATAGCATTCAACCATAATTA+AGG | - | chr7_4:35338087-35338106 | None:intergenic | 25.0% |
| ! | ATGTATACATAGGTATTAAG+AGG | + | chr7_4:35338377-35338396 | Msa1151130:intron | 25.0% |
| ! | GAGAATAATCTAAACCTAAT+GGG | - | chr7_4:35338502-35338521 | None:intergenic | 25.0% |
| ! | AGAGAATAATCTAAACCTAA+TGG | - | chr7_4:35338503-35338522 | None:intergenic | 25.0% |
| ! | TAAAAAGATGTGAGTGTTTA+AGG | + | chr7_4:35338705-35338724 | Msa1151130:intron | 25.0% |
| ! | ATCAAGAAAAATTGCAATAG+AGG | + | chr7_4:35338836-35338855 | Msa1151130:intron | 25.0% |
| ! | ACACAAATTCAAACCTTATT+AGG | - | chr7_4:35338864-35338883 | None:intergenic | 25.0% |
| ! | TAAGATATTGTACTGTTTGA+TGG | + | chr7_4:35338947-35338966 | Msa1151130:intron | 25.0% |
| !!! | AATATTTTGAATCTGCACAA+GGG | - | chr7_4:35339055-35339074 | None:intergenic | 25.0% |
| !!! | AAATATTTTGAATCTGCACA+AGG | - | chr7_4:35339056-35339075 | None:intergenic | 25.0% |
| !! | TCCTTCAGTTTTTATATTGT+AGG | + | chr7_4:35339526-35339545 | Msa1151130:CDS | 25.0% |
| ! | TCCTACAATATAAAAACTGA+AGG | - | chr7_4:35339530-35339549 | None:intergenic | 25.0% |
| !!! | AATAACAGAAGCATGTTTTT+TGG | + | chr7_4:35339695-35339714 | Msa1151130:three_prime_UTR | 25.0% |
| ! | AGTTATGGATGAAATAAAGT+GGG | + | chr7_4:35339774-35339793 | Msa1151130:three_prime_UTR | 25.0% |
| TGTGTGAAATGTAATGGTAA+AGG | + | chr7_4:35337631-35337650 | Msa1151130:CDS | 30.0% | |
| GTGTGAAATGTAATGGTAAA+GGG | + | chr7_4:35337632-35337651 | Msa1151130:CDS | 30.0% | |
| TTAAAAAACACATGCTCCAA+TGG | + | chr7_4:35337806-35337825 | Msa1151130:intron | 30.0% | |
| AAATTTATTCCAGAGTCCAT+TGG | - | chr7_4:35337825-35337844 | None:intergenic | 30.0% | |
| CAAATAGTATAAGTTTCTGC+AGG | - | chr7_4:35338243-35338262 | None:intergenic | 30.0% | |
| ATAAATAAAGGACACATGCA+AGG | - | chr7_4:35338276-35338295 | None:intergenic | 30.0% | |
| TGTATACATTCGTCAAAACA+AGG | + | chr7_4:35338342-35338361 | Msa1151130:intron | 30.0% | |
| GTATACATTCGTCAAAACAA+GGG | + | chr7_4:35338343-35338362 | Msa1151130:intron | 30.0% | |
| ACTTTGAGCAATGTATACAT+AGG | + | chr7_4:35338367-35338386 | Msa1151130:intron | 30.0% | |
| AAAGCTGATGTTGATATCAA+AGG | + | chr7_4:35338650-35338669 | Msa1151130:intron | 30.0% | |
| ! | CCTACAGTTTTTCTTATCTT+GGG | - | chr7_4:35338744-35338763 | None:intergenic | 30.0% |
| ! | ACCTACAGTTTTTCTTATCT+TGG | - | chr7_4:35338745-35338764 | None:intergenic | 30.0% |
| AGCCTTAAATTCTTCATTGA+TGG | + | chr7_4:35338767-35338786 | Msa1151130:intron | 30.0% | |
| GCCTTAAATTCTTCATTGAT+GGG | + | chr7_4:35338768-35338787 | Msa1151130:intron | 30.0% | |
| TCCCATCAATGAAGAATTTA+AGG | - | chr7_4:35338772-35338791 | None:intergenic | 30.0% | |
| ATTGCATAATTCAACTCCTT+TGG | - | chr7_4:35339329-35339348 | None:intergenic | 30.0% | |
| AGTTGAATTATGCAATACAC+AGG | + | chr7_4:35339333-35339352 | Msa1151130:CDS | 30.0% | |
| TTTATATTGTAGGAAATGGC+AGG | + | chr7_4:35339536-35339555 | Msa1151130:CDS | 30.0% | |
| TTATATTGTAGGAAATGGCA+GGG | + | chr7_4:35339537-35339556 | Msa1151130:CDS | 30.0% | |
| !!! | AAGCATGTTTTTTGGTTTGA+GGG | + | chr7_4:35339703-35339722 | Msa1151130:three_prime_UTR | 30.0% |
| GACAATGGATAATACAACAA+AGG | - | chr7_4:35339741-35339760 | None:intergenic | 30.0% | |
| GTATTATCCATTGTCTTGTA+AGG | + | chr7_4:35339746-35339765 | Msa1151130:three_prime_UTR | 30.0% | |
| CAGTTATGGATGAAATAAAG+TGG | + | chr7_4:35339773-35339792 | Msa1151130:three_prime_UTR | 30.0% | |
| GGTTTGATTGCTCATAAAGA+TGG | + | chr7_4:35337436-35337455 | Msa1151130:CDS | 35.0% | |
| CATCTGCAAGAACATGTAAA+TGG | - | chr7_4:35337613-35337632 | None:intergenic | 35.0% | |
| TGCAGATGTGTGAAATGTAA+TGG | + | chr7_4:35337625-35337644 | Msa1151130:intron | 35.0% | |
| CTTAACTGTGAAACGTGTAA+TGG | + | chr7_4:35337691-35337710 | Msa1151130:CDS | 35.0% | |
| AACAGCTACGTTAAGTTTGT+GGG | - | chr7_4:35337878-35337897 | None:intergenic | 35.0% | |
| AAACAGCTACGTTAAGTTTG+TGG | - | chr7_4:35337879-35337898 | None:intergenic | 35.0% | |
| ! | TGAGTGTTTAAGGTGTAAGT+TGG | + | chr7_4:35338715-35338734 | Msa1151130:intron | 35.0% |
| CCCAAGATAAGAAAAACTGT+AGG | + | chr7_4:35338741-35338760 | Msa1151130:intron | 35.0% | |
| TGCAATAGAGGTTCCTAATA+AGG | + | chr7_4:35338848-35338867 | Msa1151130:intron | 35.0% | |
| CTCCAAATAGTTAGGAACAA+AGG | + | chr7_4:35338987-35339006 | Msa1151130:intron | 35.0% | |
| AGCCTTTGTTCCTAACTATT+TGG | - | chr7_4:35338992-35339011 | None:intergenic | 35.0% | |
| CGCTGATAGAAGTCAATTTA+AGG | - | chr7_4:35339195-35339214 | None:intergenic | 35.0% | |
| AAAATGTTTGTGCGTTTGAC+AGG | + | chr7_4:35339230-35339249 | Msa1151130:intron | 35.0% | |
| GATCTATGGAAAACTTCATC+TGG | - | chr7_4:35339307-35339326 | None:intergenic | 35.0% | |
| ! | GAAGTTTTCCATAGATCCAA+AGG | + | chr7_4:35339310-35339329 | Msa1151130:CDS | 35.0% |
| ATTCAACTCCTTTGGATCTA+TGG | - | chr7_4:35339321-35339340 | None:intergenic | 35.0% | |
| AAAGAATCAGCAAAAAAGGC+AGG | - | chr7_4:35339373-35339392 | None:intergenic | 35.0% | |
| ACATACAATCTCAGTTGTTC+CGG | + | chr7_4:35339471-35339490 | Msa1151130:CDS | 35.0% | |
| ! | ATTACCCCTCTAGATTTTGT+TGG | + | chr7_4:35339578-35339597 | Msa1151130:CDS | 35.0% |
| ! | TTACCCCTCTAGATTTTGTT+GGG | + | chr7_4:35339579-35339598 | Msa1151130:CDS | 35.0% |
| GGAACATGCAAACAATATGT+AGG | - | chr7_4:35339657-35339676 | None:intergenic | 35.0% | |
| !!! | GAAGCATGTTTTTTGGTTTG+AGG | + | chr7_4:35339702-35339721 | Msa1151130:three_prime_UTR | 35.0% |
| !!! | AGCATGTTTTTTGGTTTGAG+GGG | + | chr7_4:35339704-35339723 | Msa1151130:three_prime_UTR | 35.0% |
| TCTTGTAAGGACTACAGTTA+TGG | + | chr7_4:35339759-35339778 | Msa1151130:three_prime_UTR | 35.0% | |
| ACTCAGTGTCCTAGTTGTTA+TGG | + | chr7_4:35337409-35337428 | Msa1151130:CDS | 40.0% | |
| AGTGTCCTAGTTGTTATGGA+AGG | + | chr7_4:35337413-35337432 | Msa1151130:CDS | 40.0% | |
| GTGTCCTAGTTGTTATGGAA+GGG | + | chr7_4:35337414-35337433 | Msa1151130:CDS | 40.0% | |
| TGTCCTAGTTGTTATGGAAG+GGG | + | chr7_4:35337415-35337434 | Msa1151130:CDS | 40.0% | |
| AAACCCCTTCCATAACAACT+AGG | - | chr7_4:35337421-35337440 | None:intergenic | 40.0% | |
| CAAATGTTGAATTCAAGCCG+AGG | + | chr7_4:35337524-35337543 | Msa1151130:intron | 40.0% | |
| !! | CTGCATTTCATTTCTGAAGC+TGG | + | chr7_4:35337560-35337579 | Msa1151130:intron | 40.0% |
| ! | TGTGAAACGTGTAATGGAAG+TGG | + | chr7_4:35337697-35337716 | Msa1151130:CDS | 40.0% |
| CAAGGATCGTATGCTTTAGT+TGG | + | chr7_4:35337935-35337954 | Msa1151130:intron | 40.0% | |
| AGTCTTGCTACCAGACTTAA+AGG | - | chr7_4:35338163-35338182 | None:intergenic | 40.0% | |
| !! | ACCTAATGGGCTTGCTTAAT+GGG | - | chr7_4:35338489-35338508 | None:intergenic | 40.0% |
| !! | AACCTAATGGGCTTGCTTAA+TGG | - | chr7_4:35338490-35338509 | None:intergenic | 40.0% |
| ! | GTTTGATGGTACTTGTGATG+CGG | + | chr7_4:35338961-35338980 | Msa1151130:intron | 40.0% |
| ACAGGAAGACACTTTCAACT+CGG | + | chr7_4:35339248-35339267 | Msa1151130:intron | 40.0% | |
| CGGAAAGTAAGTGCAACTAA+AGG | + | chr7_4:35339268-35339287 | Msa1151130:CDS | 40.0% | |
| AGTAAGTGCAACTAAAGGAG+CGG | + | chr7_4:35339273-35339292 | Msa1151130:CDS | 40.0% | |
| ! | TACCCCTCTAGATTTTGTTG+GGG | + | chr7_4:35339580-35339599 | Msa1151130:CDS | 40.0% |
| AAGCCCCAACAAAATCTAGA+GGG | - | chr7_4:35339586-35339605 | None:intergenic | 40.0% | |
| ACTTTCAACCACTCCAAACA+AGG | - | chr7_4:35339613-35339632 | None:intergenic | 40.0% | |
| CTGTAGTCCTTACAAGACAA+TGG | - | chr7_4:35339756-35339775 | None:intergenic | 40.0% | |
| TAAGTATTCACCAGTTGCAC+TGG | - | chr7_4:35339801-35339820 | None:intergenic | 40.0% | |
| !! | TGTGCTACTTGCAATGCTGA+TGG | + | chr7_4:35337355-35337374 | Msa1151130:CDS | 45.0% |
| ATAAGCAGGGCCTTTAAGTC+TGG | + | chr7_4:35338150-35338169 | Msa1151130:intron | 45.0% | |
| ACCCATTAAGCAAGCCCATT+AGG | + | chr7_4:35338485-35338504 | Msa1151130:intron | 45.0% | |
| GATGGGATAGTTGTCTGACA+TGG | + | chr7_4:35338785-35338804 | Msa1151130:intron | 45.0% | |
| TGCGGTGACTCCAAATAGTT+AGG | + | chr7_4:35338979-35338998 | Msa1151130:intron | 45.0% | |
| TGAATCTGCACAAGGGATTG+AGG | - | chr7_4:35339048-35339067 | None:intergenic | 45.0% | |
| ! | CAAAAAAGGCAGGAGTGCAT+TGG | - | chr7_4:35339363-35339382 | None:intergenic | 45.0% |
| CTCACAAATGACTCTTGCAG+TGG | - | chr7_4:35339449-35339468 | None:intergenic | 45.0% | |
| GGATTGTCGATGATGAGACA+TGG | - | chr7_4:35339509-35339528 | None:intergenic | 45.0% | |
| TATTGTAGGAAATGGCAGGG+AGG | + | chr7_4:35339540-35339559 | Msa1151130:CDS | 45.0% | |
| AGCCCCAACAAAATCTAGAG+GGG | - | chr7_4:35339585-35339604 | None:intergenic | 45.0% | |
| CAAGCCCCAACAAAATCTAG+AGG | - | chr7_4:35339587-35339606 | None:intergenic | 45.0% | |
| TGCAATGCTGATGGAGAACC+TGG | + | chr7_4:35337364-35337383 | Msa1151130:CDS | 50.0% | |
| CAAGCCGAGGTCAAATGTCT+AGG | + | chr7_4:35337537-35337556 | Msa1151130:intron | 50.0% | |
| GCAGCCTAGACATTTGACCT+CGG | - | chr7_4:35337544-35337563 | None:intergenic | 50.0% | |
| AAGCTTCCTTGTGCGACTTG+TGG | + | chr7_4:35337655-35337674 | Msa1151130:CDS | 50.0% | |
| ! | ACACATGCTCCAATGGACTC+TGG | + | chr7_4:35337813-35337832 | Msa1151130:intron | 50.0% |
| CAAATGACTCTTGCAGTGGC+AGG | - | chr7_4:35339445-35339464 | None:intergenic | 50.0% | |
| GACATGGTGACACGAGTTAC+CGG | - | chr7_4:35339493-35339512 | None:intergenic | 50.0% | |
| TGGCAGGGAGGTTTACTTGA+AGG | + | chr7_4:35339552-35339571 | Msa1151130:CDS | 50.0% | |
| TTGGGGCTTGTGTCCTTGTT+TGG | + | chr7_4:35339597-35339616 | Msa1151130:CDS | 50.0% | |
| ! | GCTTGTGTCCTTGTTTGGAG+TGG | + | chr7_4:35339602-35339621 | Msa1151130:CDS | 50.0% |
| TAAAGTGGGACCAGTGCAAC+TGG | + | chr7_4:35339788-35339807 | Msa1151130:three_prime_UTR | 50.0% | |
| ACAGACTATTCCTCCTCGCC+CGG | - | chr7_4:35337338-35337357 | None:intergenic | 55.0% | |
| CGAGATCCACAAGTCGCACA+AGG | - | chr7_4:35337664-35337683 | None:intergenic | 55.0% | |
| TGTGCGACTTGTGGATCTCG+TGG | + | chr7_4:35337664-35337683 | Msa1151130:CDS | 55.0% | |
| !!! | TTTTCAGGTTGTGCCGGGCG+AGG | + | chr7_4:35337322-35337341 | Msa1151130:CDS | 60.0% |
| ! | TCAGGTTGTGCCGGGCGAGG+AGG | + | chr7_4:35337325-35337344 | Msa1151130:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 35337322 | 35339827 | 35337322 | ID=Msa1151130;Name=Msa1151130 |
| chr7_4 | mRNA | 35337322 | 35339827 | 35337322 | ID=Msa1151130-mRNA-1;Parent=Msa1151130;Name=Msa1151130-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0.66|1|1|1|3|191|219 |
| chr7_4 | exon | 35337322 | 35337470 | 35337322 | ID=Msa1151130-mRNA-1:exon:8312;Parent=Msa1151130-mRNA-1 |
| chr7_4 | exon | 35337630 | 35337755 | 35337630 | ID=Msa1151130-mRNA-1:exon:8313;Parent=Msa1151130-mRNA-1 |
| chr7_4 | exon | 35339252 | 35339827 | 35339252 | ID=Msa1151130-mRNA-1:exon:8314;Parent=Msa1151130-mRNA-1 |
| chr7_4 | CDS | 35337322 | 35337470 | 35337322 | ID=Msa1151130-mRNA-1:cds;Parent=Msa1151130-mRNA-1 |
| chr7_4 | CDS | 35337630 | 35337755 | 35337630 | ID=Msa1151130-mRNA-1:cds;Parent=Msa1151130-mRNA-1 |
| chr7_4 | CDS | 35339252 | 35339636 | 35339252 | ID=Msa1151130-mRNA-1:cds;Parent=Msa1151130-mRNA-1 |
| chr7_4 | three_prime_UTR | 35339637 | 35339827 | 35339637 | ID=Msa1151130-mRNA-1:three_prime_utr;Parent=Msa1151130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
