Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176200 | XP_024629354.1 | 94.588 | 425 | 21 | 1 | 1 | 423 | 59 | 483 | 0.0 | 821 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176200 | sp|F4IJ77|AATP4_ARATH | 57.437 | 437 | 165 | 7 | 1 | 423 | 60 | 489 | 2.20e-163 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176200 | A0A396GJ98 | 94.588 | 425 | 21 | 1 | 1 | 423 | 59 | 483 | 0.0 | 821 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033850 | Msa1176200 | 0.808491 | 3.016850e-50 | -8.615850e-47 |
| Msa0060070 | Msa1176200 | 0.804184 | 2.440131e-49 | -8.615850e-47 |
| Msa0081620 | Msa1176200 | 0.803376 | 3.591445e-49 | -8.615850e-47 |
| Msa0743870 | Msa1176200 | 0.817841 | 2.674659e-52 | -8.615850e-47 |
| Msa0775560 | Msa1176200 | 0.814656 | 1.378636e-51 | -8.615850e-47 |
| Msa0812950 | Msa1176200 | 0.800526 | 1.383154e-48 | -8.615850e-47 |
| Msa0173960 | Msa1176200 | 0.804872 | 1.753755e-49 | -8.615850e-47 |
| Msa0187490 | Msa1176200 | 0.810539 | 1.096175e-50 | -8.615850e-47 |
| Msa0189030 | Msa1176200 | 0.814802 | 1.279403e-51 | -8.615850e-47 |
| Msa0194010 | Msa1176200 | 0.802459 | 5.555549e-49 | -8.615850e-47 |
| Msa0235880 | Msa1176200 | 0.807439 | 5.051778e-50 | -8.615850e-47 |
| Msa0235940 | Msa1176200 | 0.805988 | 1.022933e-49 | -8.615850e-47 |
| Msa0378010 | Msa1176200 | 0.808006 | 3.828774e-50 | -8.615850e-47 |
| Msa0397250 | Msa1176200 | 0.800581 | 1.347905e-48 | -8.615850e-47 |
| Msa0427580 | Msa1176200 | 0.824344 | 8.494515e-54 | -8.615850e-47 |
| Msa0309270 | Msa1176200 | 0.821604 | 3.696590e-53 | -8.615850e-47 |
| Msa1176200 | Msa1177780 | 0.805049 | 1.610460e-49 | -8.615850e-47 |
| Msa1176200 | Msa1209190 | 0.804736 | 1.871700e-49 | -8.615850e-47 |
| Msa1176200 | Msa1260680 | 0.802996 | 4.303152e-49 | -8.615850e-47 |
| Msa1176200 | Msa1270660 | 0.828543 | 8.480499e-55 | -8.615850e-47 |
| Msa1176200 | Msa1270730 | 0.821120 | 4.779636e-53 | -8.615850e-47 |
| Msa1176200 | Msa1335230 | 0.843240 | 1.582939e-58 | -8.615850e-47 |
| Msa1176200 | Msa1364370 | 0.800082 | 1.702530e-48 | -8.615850e-47 |
| Msa1176200 | Msa1369920 | -0.811077 | 8.386388e-51 | -8.615850e-47 |
| Msa1176200 | Msa1370590 | 0.801910 | 7.205501e-49 | -8.615850e-47 |
| Msa1176200 | Msa1384100 | 0.801619 | 8.267458e-49 | -8.615850e-47 |
| Msa1176200 | Msa1421210 | 0.800585 | 1.345127e-48 | -8.615850e-47 |
| Msa1176200 | Msa1423820 | 0.823235 | 1.545214e-53 | -8.615850e-47 |
| Msa1176200 | Msa1430130 | 0.809123 | 2.210548e-50 | -8.615850e-47 |
| Msa1176200 | Msa1437130 | 0.811256 | 7.666932e-51 | -8.615850e-47 |
| Msa1176200 | Msa1442790 | 0.816593 | 5.104278e-52 | -8.615850e-47 |
| Msa1176200 | Msa1444120 | 0.808108 | 3.641255e-50 | -8.615850e-47 |
| Msa1176200 | Msa1444260 | 0.813305 | 2.737701e-51 | -8.615850e-47 |
| Msa1176200 | Msa1460750 | 0.807989 | 3.860121e-50 | -8.615850e-47 |
| Msa0482940 | Msa1176200 | 0.805756 | 1.144878e-49 | -8.615850e-47 |
| Msa0518170 | Msa1176200 | 0.837868 | 4.032767e-57 | -8.615850e-47 |
| Msa0566350 | Msa1176200 | 0.826069 | 3.321132e-54 | -8.615850e-47 |
| Msa0566750 | Msa1176200 | 0.825148 | 5.489393e-54 | -8.615850e-47 |
| Msa0600450 | Msa1176200 | 0.808083 | 3.686694e-50 | -8.615850e-47 |
| Msa0844610 | Msa1176200 | 0.825327 | 4.979029e-54 | -8.615850e-47 |
| Msa0853440 | Msa1176200 | 0.802021 | 6.836607e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176200 | MtrunA17_Chr8g0346371 | 94.588 | 425 | 21 | 1 | 1 | 423 | 59 | 483 | 0.0 | 821 |
| Msa1176200 | MtrunA17_Chr7g0276031 | 63.285 | 414 | 128 | 9 | 1 | 413 | 61 | 451 | 0.0 | 517 |
| Msa1176200 | MtrunA17_Chr3g0127381 | 52.267 | 419 | 176 | 9 | 4 | 412 | 66 | 470 | 2.27e-152 | 441 |
| Msa1176200 | MtrunA17_Chr2g0308991 | 36.410 | 390 | 212 | 5 | 1 | 356 | 57 | 444 | 4.48e-86 | 271 |
| Msa1176200 | MtrunA17_Chr4g0072491 | 33.571 | 420 | 226 | 9 | 1 | 371 | 59 | 474 | 6.58e-70 | 229 |
| Msa1176200 | MtrunA17_Chr8g0372701 | 35.359 | 362 | 201 | 9 | 4 | 338 | 81 | 436 | 2.00e-67 | 222 |
| Msa1176200 | MtrunA17_Chr1g0155131 | 34.010 | 394 | 207 | 10 | 7 | 357 | 69 | 452 | 3.66e-65 | 216 |
| Msa1176200 | MtrunA17_Chr5g0404651 | 35.112 | 356 | 200 | 5 | 34 | 360 | 100 | 453 | 3.95e-65 | 216 |
| Msa1176200 | MtrunA17_Chr2g0315911 | 35.673 | 342 | 184 | 10 | 41 | 356 | 104 | 435 | 1.89e-64 | 213 |
| Msa1176200 | MtrunA17_Chr2g0292561 | 33.162 | 389 | 212 | 8 | 7 | 357 | 72 | 450 | 3.61e-64 | 213 |
| Msa1176200 | MtrunA17_Chr1g0155121 | 33.618 | 351 | 181 | 6 | 34 | 335 | 91 | 438 | 7.16e-63 | 210 |
| Msa1176200 | MtrunA17_Chr4g0059811 | 33.773 | 379 | 194 | 8 | 31 | 355 | 95 | 470 | 9.08e-63 | 211 |
| Msa1176200 | MtrunA17_Chr2g0315971 | 31.937 | 382 | 221 | 10 | 1 | 356 | 58 | 426 | 1.07e-62 | 215 |
| Msa1176200 | MtrunA17_Chr2g0315971 | 41.532 | 248 | 130 | 6 | 122 | 357 | 460 | 704 | 3.74e-57 | 200 |
| Msa1176200 | MtrunA17_Chr7g0215951 | 33.867 | 375 | 198 | 9 | 29 | 356 | 89 | 460 | 1.18e-62 | 210 |
| Msa1176200 | MtrunA17_Chr2g0315921 | 34.311 | 341 | 195 | 8 | 41 | 356 | 102 | 438 | 1.19e-62 | 208 |
| Msa1176200 | MtrunA17_Chr6g0452371 | 32.152 | 395 | 221 | 10 | 7 | 357 | 71 | 462 | 1.60e-62 | 210 |
| Msa1176200 | MtrunA17_Chr6g0452451 | 33.158 | 380 | 199 | 7 | 7 | 335 | 71 | 446 | 2.19e-62 | 209 |
| Msa1176200 | MtrunA17_Chr5g0404661 | 32.990 | 388 | 200 | 10 | 17 | 356 | 95 | 470 | 1.22e-61 | 207 |
| Msa1176200 | MtrunA17_Chr6g0452391 | 31.421 | 401 | 228 | 9 | 1 | 357 | 63 | 460 | 1.45e-61 | 207 |
| Msa1176200 | MtrunA17_Chr6g0452401 | 31.450 | 407 | 219 | 8 | 7 | 357 | 47 | 449 | 2.71e-61 | 206 |
| Msa1176200 | MtrunA17_Chr2g0315991 | 35.191 | 341 | 186 | 9 | 41 | 356 | 98 | 428 | 2.95e-61 | 206 |
| Msa1176200 | MtrunA17_Chr2g0315981 | 30.971 | 381 | 233 | 8 | 1 | 356 | 58 | 433 | 3.95e-60 | 202 |
| Msa1176200 | MtrunA17_Chr6g0452411 | 32.345 | 371 | 193 | 8 | 41 | 357 | 1 | 367 | 1.70e-59 | 199 |
| Msa1176200 | MtrunA17_Chr6g0466811 | 34.091 | 352 | 205 | 8 | 7 | 335 | 81 | 428 | 4.69e-59 | 200 |
| Msa1176200 | MtrunA17_Chr2g0316041 | 28.851 | 409 | 242 | 9 | 1 | 382 | 1 | 387 | 1.78e-58 | 197 |
| Msa1176200 | MtrunA17_Chr3g0134831 | 37.308 | 260 | 135 | 6 | 122 | 356 | 31 | 287 | 5.17e-55 | 184 |
| Msa1176200 | MtrunA17_Chr6g0452361 | 38.627 | 233 | 127 | 5 | 138 | 356 | 1 | 231 | 1.38e-48 | 166 |
| Msa1176200 | MtrunA17_Chr2g0316021 | 31.270 | 307 | 178 | 6 | 1 | 282 | 58 | 356 | 3.36e-46 | 164 |
| Msa1176200 | MtrunA17_Chr6g0452481 | 34.661 | 251 | 149 | 5 | 121 | 357 | 6 | 255 | 9.21e-45 | 157 |
| Msa1176200 | MtrunA17_Chr5g0404681 | 34.532 | 139 | 81 | 4 | 56 | 192 | 22 | 152 | 5.15e-23 | 94.7 |
| Msa1176200 | MtrunA17_Chr5g0404671 | 37.963 | 108 | 62 | 4 | 251 | 356 | 1 | 105 | 6.93e-17 | 77.8 |
| Msa1176200 | MtrunA17_Chr1g0148871 | 34.375 | 96 | 61 | 2 | 240 | 335 | 18 | 111 | 9.37e-13 | 66.2 |
| Msa1176200 | MtrunA17_Chr5g0404691 | 30.822 | 146 | 92 | 6 | 217 | 356 | 7 | 149 | 1.53e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176200 | AT2G46620.1 | 57.437 | 437 | 165 | 7 | 1 | 423 | 60 | 489 | 2.23e-164 | 471 |
| Msa1176200 | AT4G25835.1 | 35.363 | 427 | 220 | 10 | 4 | 384 | 62 | 478 | 1.09e-73 | 239 |
| Msa1176200 | AT5G57480.1 | 34.753 | 446 | 220 | 10 | 4 | 399 | 62 | 486 | 1.09e-72 | 237 |
| Msa1176200 | AT5G17760.1 | 41.060 | 302 | 152 | 8 | 71 | 356 | 163 | 454 | 2.43e-68 | 225 |
| Msa1176200 | AT3G28580.1 | 35.897 | 351 | 181 | 7 | 30 | 338 | 91 | 439 | 9.50e-68 | 224 |
| Msa1176200 | AT2G18193.1 | 38.922 | 334 | 173 | 9 | 34 | 343 | 101 | 427 | 4.74e-67 | 222 |
| Msa1176200 | AT5G40010.1 | 34.959 | 369 | 190 | 9 | 26 | 348 | 90 | 454 | 2.58e-66 | 220 |
| Msa1176200 | AT4G30250.1 | 34.500 | 400 | 213 | 8 | 4 | 356 | 62 | 459 | 2.92e-66 | 220 |
| Msa1176200 | AT4G30250.2 | 34.500 | 400 | 213 | 8 | 4 | 356 | 64 | 461 | 3.22e-66 | 220 |
| Msa1176200 | AT3G50930.1 | 35.933 | 359 | 189 | 10 | 34 | 357 | 148 | 500 | 5.21e-66 | 221 |
| Msa1176200 | AT3G28580.2 | 35.976 | 328 | 190 | 6 | 30 | 338 | 91 | 417 | 6.90e-65 | 216 |
| Msa1176200 | AT3G50940.1 | 36.364 | 330 | 178 | 8 | 34 | 338 | 102 | 424 | 1.86e-64 | 214 |
| Msa1176200 | AT3G28600.1 | 36.888 | 347 | 185 | 11 | 37 | 356 | 107 | 446 | 2.63e-64 | 214 |
| Msa1176200 | AT3G28610.1 | 37.126 | 334 | 176 | 10 | 37 | 343 | 106 | 432 | 4.53e-64 | 213 |
| Msa1176200 | AT5G17750.1 | 36.449 | 321 | 167 | 6 | 33 | 322 | 76 | 390 | 5.53e-64 | 211 |
| Msa1176200 | AT2G18190.1 | 36.556 | 331 | 178 | 7 | 34 | 338 | 102 | 426 | 1.28e-63 | 213 |
| Msa1176200 | AT5G17740.1 | 31.529 | 425 | 231 | 13 | 3 | 390 | 71 | 472 | 1.03e-62 | 211 |
| Msa1176200 | AT5G17730.1 | 32.861 | 353 | 199 | 9 | 33 | 356 | 100 | 443 | 3.74e-62 | 208 |
| Msa1176200 | AT3G28540.2 | 33.918 | 342 | 184 | 8 | 33 | 335 | 96 | 434 | 1.82e-60 | 204 |
| Msa1176200 | AT3G28540.1 | 33.918 | 342 | 184 | 8 | 33 | 335 | 96 | 434 | 2.00e-60 | 204 |
| Msa1176200 | AT3G28510.1 | 32.698 | 367 | 201 | 8 | 33 | 356 | 95 | 458 | 6.39e-60 | 204 |
| Msa1176200 | AT5G40000.1 | 35.362 | 345 | 192 | 11 | 37 | 356 | 111 | 449 | 8.93e-60 | 202 |
| Msa1176200 | AT4G05380.1 | 37.202 | 336 | 177 | 8 | 47 | 356 | 120 | 447 | 3.14e-59 | 200 |
| Msa1176200 | AT3G28570.1 | 33.807 | 352 | 210 | 9 | 22 | 356 | 88 | 433 | 4.05e-59 | 199 |
| Msa1176200 | AT3G28570.2 | 33.807 | 352 | 210 | 9 | 22 | 356 | 95 | 440 | 4.38e-59 | 200 |
| Msa1176200 | AT3G28600.2 | 39.568 | 278 | 141 | 7 | 104 | 356 | 132 | 407 | 1.47e-58 | 198 |
| Msa1176200 | AT1G43910.1 | 33.642 | 324 | 181 | 7 | 47 | 343 | 119 | 435 | 2.29e-52 | 182 |
| Msa1176200 | AT3G28520.1 | 32.653 | 343 | 189 | 8 | 33 | 338 | 85 | 422 | 5.38e-51 | 179 |
| Msa1176200 | AT5G17760.2 | 48.428 | 159 | 75 | 2 | 71 | 229 | 163 | 314 | 2.27e-40 | 147 |
| Msa1176200 | AT3G29800.1 | 28.875 | 329 | 205 | 11 | 27 | 342 | 55 | 367 | 3.22e-37 | 141 |
| Msa1176200 | AT4G05340.1 | 46.377 | 69 | 36 | 1 | 242 | 310 | 27 | 94 | 1.52e-12 | 63.9 |
Find 94 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATGGTTTGTTTAGATTA+AGG | 0.215457 | 8_1:+8257425 | Msa1176200:CDS |
| ACGGATTTGAGGAAGATTTA+TGG | 0.228137 | 8_1:+8257409 | Msa1176200:CDS |
| TTCTCGGCGCCACGGTTTAT+TGG | 0.279842 | 8_1:+8256381 | Msa1176200:CDS |
| GAATAGGTCGGGTAATTTAT+TGG | 0.293961 | 8_1:+8257459 | Msa1176200:CDS |
| GCTGAGTATTCTGCGTTTAT+CGG | 0.300204 | 8_1:-8256462 | None:intergenic |
| ACAAATGCACCTGTTTGATT+TGG | 0.324681 | 8_1:-8256422 | None:intergenic |
| TCGGTTTATAACATCGGAAT+TGG | 0.335050 | 8_1:+8256916 | Msa1176200:CDS |
| AACATTTGAAACGATGTTGA+TGG | 0.338402 | 8_1:+8256622 | Msa1176200:CDS |
| GGGGTGGTGGAAGGAGGTGG+AGG | 0.341292 | 8_1:+8256576 | Msa1176200:CDS |
| AATGTTGATGGATGATTAAA+CGG | 0.346660 | 8_1:-8256605 | None:intergenic |
| TAAGGAATGTTAAGAGGAAT+AGG | 0.348823 | 8_1:+8257443 | Msa1176200:CDS |
| CCGGCAACGGTTACGGCGGC+GGG | 0.352366 | 8_1:+8256944 | Msa1176200:CDS |
| AAACGGAGCTTCTTGTTATA+CGG | 0.355478 | 8_1:+8256731 | Msa1176200:CDS |
| ATAAAAGAATCGGTCGTGTT+TGG | 0.378794 | 8_1:+8256708 | Msa1176200:CDS |
| TGCACCTGTTTGATTTGGTT+CGG | 0.381073 | 8_1:-8256417 | None:intergenic |
| GACTTCACCAATCTCATTAC+CGG | 0.382732 | 8_1:+8256299 | Msa1176200:CDS |
| GAAAATCATTATTCTTTCTT+CGG | 0.384048 | 8_1:-8257008 | None:intergenic |
| ATTATTTCCGGTAATGAGAT+TGG | 0.397632 | 8_1:-8256306 | None:intergenic |
| CGGGCTATTAAATCGGTAAT+CGG | 0.398376 | 8_1:+8257265 | Msa1176200:CDS |
| CCCGCCGCCGTAACCGTTGC+CGG | 0.398549 | 8_1:-8256944 | None:intergenic |
| TCCGGCAACGGTTACGGCGG+CGG | 0.415110 | 8_1:+8256943 | Msa1176200:CDS |
| AACATCGTTTCAAATGTTGA+TGG | 0.416178 | 8_1:-8256617 | None:intergenic |
| GGTAATCGGGGCATTGCAAA+TGG | 0.420117 | 8_1:+8257279 | Msa1176200:CDS |
| CGACTAGGTCGGAGAAAATT+CGG | 0.420419 | 8_1:-8257058 | None:intergenic |
| TCAACAACGATAATAGATTT+CGG | 0.429950 | 8_1:-8256884 | None:intergenic |
| GGAATCTCCGGCAACGGTTA+CGG | 0.431889 | 8_1:+8256937 | Msa1176200:CDS |
| TTCGTTAATATCACCGGCGA+TGG | 0.432789 | 8_1:+8256554 | Msa1176200:CDS |
| TTCTTGTTATACGGTGAATC+CGG | 0.433520 | 8_1:+8256740 | Msa1176200:CDS |
| TCGTTAATATCACCGGCGAT+GGG | 0.433647 | 8_1:+8256555 | Msa1176200:CDS |
| GGGCTATTAAATCGGTAATC+GGG | 0.437429 | 8_1:+8257266 | Msa1176200:CDS |
| TTAGATTAAGGAATGTTAAG+AGG | 0.444604 | 8_1:+8257437 | Msa1176200:CDS |
| AACATCGGAATTGGAATCTC+CGG | 0.452087 | 8_1:+8256925 | Msa1176200:CDS |
| GGTGTTCTTTGTGGTGGTGA+TGG | 0.454004 | 8_1:+8257379 | Msa1176200:CDS |
| AGTTTGAGTCCGGCGGAGAT+AGG | 0.458254 | 8_1:+8257208 | Msa1176200:CDS |
| CGGAAAATCTCCTCCACCGC+CGG | 0.462392 | 8_1:-8257175 | None:intergenic |
| GAATCGGTCGTGTTTGGAAA+CGG | 0.462731 | 8_1:+8256714 | Msa1176200:CDS |
| ATCATCGAAGACAGGTTTCT+CGG | 0.463592 | 8_1:+8256365 | Msa1176200:CDS |
| GACGGTGATGGAAAAGGGTG+TGG | 0.465085 | 8_1:+8257301 | Msa1176200:CDS |
| AAGAATTATTATAAAAGAAT+CGG | 0.466313 | 8_1:+8256698 | Msa1176200:CDS |
| GCCGAGTCGGGCTATTAAAT+CGG | 0.467127 | 8_1:+8257258 | Msa1176200:CDS |
| TATGATCGTACGGCGGATAG+AGG | 0.472611 | 8_1:+8257327 | Msa1176200:CDS |
| ACTTTACGATAAAACATGTT+CGG | 0.478150 | 8_1:-8256236 | None:intergenic |
| ATCTAGCTTTGTTGCAGCCA+TGG | 0.479264 | 8_1:+8256772 | Msa1176200:CDS |
| GAATCGGAACTCGCCGAGTC+GGG | 0.479389 | 8_1:+8257246 | Msa1176200:CDS |
| AATTTATTGGTCAATGATGA+AGG | 0.489531 | 8_1:+8257472 | Msa1176200:CDS |
| GCTTTGGCGAATAGTTACTT+AGG | 0.495433 | 8_1:+8257130 | Msa1176200:CDS |
| ATAAAACATGTTCGGTTGCA+TGG | 0.503776 | 8_1:-8256228 | None:intergenic |
| CGTTAATATCACCGGCGATG+GGG | 0.504311 | 8_1:+8256556 | Msa1176200:CDS |
| AAAACCGAACCAAATCAAAC+AGG | 0.507238 | 8_1:+8256413 | Msa1176200:CDS |
| ACGGTGATGGAAAAGGGTGT+GGG | 0.516936 | 8_1:+8257302 | Msa1176200:CDS |
| ATATGAACGTCCACACGACT+AGG | 0.522443 | 8_1:-8257073 | None:intergenic |
| GGCGGGGATTCAGAATTTCA+TGG | 0.525375 | 8_1:+8256961 | Msa1176200:CDS |
| GCAGGGAGCGAGTTTGAGTC+CGG | 0.529877 | 8_1:+8257198 | Msa1176200:CDS |
| GTTAATATCACCGGCGATGG+GGG | 0.538257 | 8_1:+8256557 | Msa1176200:CDS |
| GAAATCTATTATCGTTGTTG+AGG | 0.540126 | 8_1:+8256886 | Msa1176200:CDS |
| CGTTTGTTCGTTAATATCAC+CGG | 0.540288 | 8_1:+8256548 | Msa1176200:CDS |
| GAATGTTAAGAGGAATAGGT+CGG | 0.544625 | 8_1:+8257447 | Msa1176200:CDS |
| GTGAGTTGATGATTGCGAAT+CGG | 0.552462 | 8_1:+8257230 | Msa1176200:CDS |
| CGAATCGGAACTCGCCGAGT+CGG | 0.559326 | 8_1:+8257245 | Msa1176200:CDS |
| CCGATCAAATCATCGAAGAC+AGG | 0.562107 | 8_1:+8256357 | Msa1176200:CDS |
| CGGTGATGGAAAAGGGTGTG+GGG | 0.563898 | 8_1:+8257303 | Msa1176200:CDS |
| GTATTCTATTTCAGCGGACA+TGG | 0.564990 | 8_1:-8256507 | None:intergenic |
| AATGTTAAGAGGAATAGGTC+GGG | 0.568612 | 8_1:+8257448 | Msa1176200:CDS |
| GCCATTGTATTCTATTTCAG+CGG | 0.568843 | 8_1:-8256513 | None:intergenic |
| CCTGTCTTCGATGATTTGAT+CGG | 0.569361 | 8_1:-8256357 | None:intergenic |
| CAAATGGACGGTGATGGAAA+AGG | 0.573028 | 8_1:+8257295 | Msa1176200:CDS |
| ATCAACTCACCTATCTCCGC+CGG | 0.583450 | 8_1:-8257217 | None:intergenic |
| TTATACGGTGAATCCGGTAC+CGG | 0.585271 | 8_1:+8256746 | Msa1176200:CDS |
| AGTAACCAAGGTGTTCTTTG+TGG | 0.595481 | 8_1:+8257370 | Msa1176200:CDS |
| GCATTGCAAATGGACGGTGA+TGG | 0.605343 | 8_1:+8257289 | Msa1176200:CDS |
| GGCTATTAAATCGGTAATCG+GGG | 0.605421 | 8_1:+8257267 | Msa1176200:CDS |
| ATCGGGGCATTGCAAATGGA+CGG | 0.606342 | 8_1:+8257283 | Msa1176200:CDS |
| AAGTCGGAATCTTCAAGAGA+AGG | 0.608105 | 8_1:-8256281 | None:intergenic |
| AAATGGACGGTGATGGAAAA+GGG | 0.611545 | 8_1:+8257296 | Msa1176200:CDS |
| ATCTCCGGCAACGGTTACGG+CGG | 0.614797 | 8_1:+8256940 | Msa1176200:CDS |
| GAACGTCCACACGACTAGGT+CGG | 0.615596 | 8_1:-8257069 | None:intergenic |
| TCTCGATCGGTTTATAACAT+CGG | 0.620044 | 8_1:+8256910 | Msa1176200:CDS |
| GGTAATGAGATTGGTGAAGT+CGG | 0.621262 | 8_1:-8256297 | None:intergenic |
| GGGATTCAGAATTTCATGGA+CGG | 0.622282 | 8_1:+8256965 | Msa1176200:CDS |
| GGAATTGGAATCTCCGGCAA+CGG | 0.626385 | 8_1:+8256931 | Msa1176200:CDS |
| TTTATAGAACCAATAAACCG+TGG | 0.631666 | 8_1:-8256390 | None:intergenic |
| ACCGATTTAATAGCCCGACT+CGG | 0.633107 | 8_1:-8257259 | None:intergenic |
| AACCAAGGTGTTCTTTGTGG+TGG | 0.636999 | 8_1:+8257373 | Msa1176200:CDS |
| CGGCAACGGTTACGGCGGCG+GGG | 0.642529 | 8_1:+8256945 | Msa1176200:CDS |
| GGTGTGGGGATATGATCGTA+CGG | 0.644792 | 8_1:+8257317 | Msa1176200:CDS |
| TCGTTGTTGAGGATCTCGAT+CGG | 0.655691 | 8_1:+8256897 | Msa1176200:CDS |
| ATAACAAAGAAAATTCGCCA+TGG | 0.656962 | 8_1:-8256789 | None:intergenic |
| TCCGCTGAAATAGAATACAA+TGG | 0.663600 | 8_1:+8256512 | Msa1176200:CDS |
| GAATAGTTACTTAGGTGTGA+AGG | 0.666896 | 8_1:+8257138 | Msa1176200:CDS |
| CACCACCACAAAGAACACCT+TGG | 0.671779 | 8_1:-8257375 | None:intergenic |
| GCGGATAGAGGATGATGACG+TGG | 0.692126 | 8_1:+8257339 | Msa1176200:CDS |
| GTGGAAGATGAAAGTAACCA+AGG | 0.702124 | 8_1:+8257358 | Msa1176200:CDS |
| GGGAGCGAGTTTGAGTCCGG+CGG | 0.703907 | 8_1:+8257201 | Msa1176200:CDS |
| GTGGGGATATGATCGTACGG+CGG | 0.779328 | 8_1:+8257320 | Msa1176200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAATTATTATAAAAGAAT+CGG | + | chr8_1:8256698-8256717 | Msa1176200:CDS | 10.0% |
| !! | AAGAATTATTATAAAAGAAT+CGG | + | chr8_1:8256698-8256717 | Msa1176200:CDS | 10.0% |
| !! | GAAAATCATTATTCTTTCTT+CGG | - | chr8_1:8257011-8257030 | None:intergenic | 20.0% |
| !!! | TTTTTCATCTTTTAAAGCTT+TGG | + | chr8_1:8257114-8257133 | Msa1176200:CDS | 20.0% |
| !!! | TTTATGGTTTGTTTAGATTA+AGG | + | chr8_1:8257425-8257444 | Msa1176200:CDS | 20.0% |
| !! | GAAAATCATTATTCTTTCTT+CGG | - | chr8_1:8257011-8257030 | None:intergenic | 20.0% |
| !!! | TTTTTCATCTTTTAAAGCTT+TGG | + | chr8_1:8257114-8257133 | Msa1176200:CDS | 20.0% |
| !!! | TTTATGGTTTGTTTAGATTA+AGG | + | chr8_1:8257425-8257444 | Msa1176200:CDS | 20.0% |
| ! | ACTTTACGATAAAACATGTT+CGG | - | chr8_1:8256239-8256258 | None:intergenic | 25.0% |
| !!! | GATGTTGTTTTGATTATTTC+CGG | - | chr8_1:8256321-8256340 | None:intergenic | 25.0% |
| !! | AATGTTGATGGATGATTAAA+CGG | - | chr8_1:8256608-8256627 | None:intergenic | 25.0% |
| ! | TCAACAACGATAATAGATTT+CGG | - | chr8_1:8256887-8256906 | None:intergenic | 25.0% |
| ! | TTAGATTAAGGAATGTTAAG+AGG | + | chr8_1:8257437-8257456 | Msa1176200:CDS | 25.0% |
| ! | AATTTATTGGTCAATGATGA+AGG | + | chr8_1:8257472-8257491 | Msa1176200:CDS | 25.0% |
| ! | ACTTTACGATAAAACATGTT+CGG | - | chr8_1:8256239-8256258 | None:intergenic | 25.0% |
| !!! | GATGTTGTTTTGATTATTTC+CGG | - | chr8_1:8256321-8256340 | None:intergenic | 25.0% |
| !! | AATGTTGATGGATGATTAAA+CGG | - | chr8_1:8256608-8256627 | None:intergenic | 25.0% |
| ! | TCAACAACGATAATAGATTT+CGG | - | chr8_1:8256887-8256906 | None:intergenic | 25.0% |
| ! | TTAGATTAAGGAATGTTAAG+AGG | + | chr8_1:8257437-8257456 | Msa1176200:CDS | 25.0% |
| ! | AATTTATTGGTCAATGATGA+AGG | + | chr8_1:8257472-8257491 | Msa1176200:CDS | 25.0% |
| ATTATTTCCGGTAATGAGAT+TGG | - | chr8_1:8256309-8256328 | None:intergenic | 30.0% | |
| TTTATAGAACCAATAAACCG+TGG | - | chr8_1:8256393-8256412 | None:intergenic | 30.0% | |
| AACATCGTTTCAAATGTTGA+TGG | - | chr8_1:8256620-8256639 | None:intergenic | 30.0% | |
| ! | AACATTTGAAACGATGTTGA+TGG | + | chr8_1:8256622-8256641 | Msa1176200:CDS | 30.0% |
| ATAACAAAGAAAATTCGCCA+TGG | - | chr8_1:8256792-8256811 | None:intergenic | 30.0% | |
| GAAATCTATTATCGTTGTTG+AGG | + | chr8_1:8256886-8256905 | Msa1176200:CDS | 30.0% | |
| AAAGATGAAAAATCACACAC+CGG | - | chr8_1:8257106-8257125 | None:intergenic | 30.0% | |
| TAAGGAATGTTAAGAGGAAT+AGG | + | chr8_1:8257443-8257462 | Msa1176200:CDS | 30.0% | |
| ATTATTTCCGGTAATGAGAT+TGG | - | chr8_1:8256309-8256328 | None:intergenic | 30.0% | |
| TTTATAGAACCAATAAACCG+TGG | - | chr8_1:8256393-8256412 | None:intergenic | 30.0% | |
| AACATCGTTTCAAATGTTGA+TGG | - | chr8_1:8256620-8256639 | None:intergenic | 30.0% | |
| ! | AACATTTGAAACGATGTTGA+TGG | + | chr8_1:8256622-8256641 | Msa1176200:CDS | 30.0% |
| ATAACAAAGAAAATTCGCCA+TGG | - | chr8_1:8256792-8256811 | None:intergenic | 30.0% | |
| GAAATCTATTATCGTTGTTG+AGG | + | chr8_1:8256886-8256905 | Msa1176200:CDS | 30.0% | |
| AAAGATGAAAAATCACACAC+CGG | - | chr8_1:8257106-8257125 | None:intergenic | 30.0% | |
| TAAGGAATGTTAAGAGGAAT+AGG | + | chr8_1:8257443-8257462 | Msa1176200:CDS | 30.0% | |
| AAAACCGAACCAAATCAAAC+AGG | + | chr8_1:8256413-8256432 | Msa1176200:CDS | 35.0% | |
| ACAAATGCACCTGTTTGATT+TGG | - | chr8_1:8256425-8256444 | None:intergenic | 35.0% | |
| TCCGCTGAAATAGAATACAA+TGG | + | chr8_1:8256512-8256531 | Msa1176200:CDS | 35.0% | |
| GCCATTGTATTCTATTTCAG+CGG | - | chr8_1:8256516-8256535 | None:intergenic | 35.0% | |
| CGTTTGTTCGTTAATATCAC+CGG | + | chr8_1:8256548-8256567 | Msa1176200:CDS | 35.0% | |
| ATAAAAGAATCGGTCGTGTT+TGG | + | chr8_1:8256708-8256727 | Msa1176200:CDS | 35.0% | |
| ! | AAACGGAGCTTCTTGTTATA+CGG | + | chr8_1:8256731-8256750 | Msa1176200:CDS | 35.0% |
| ! | TTCTTGTTATACGGTGAATC+CGG | + | chr8_1:8256740-8256759 | Msa1176200:CDS | 35.0% |
| ! | TGCAACAAAGCTAGATTTTC+CGG | - | chr8_1:8256768-8256787 | None:intergenic | 35.0% |
| ! | TCTCGATCGGTTTATAACAT+CGG | + | chr8_1:8256910-8256929 | Msa1176200:CDS | 35.0% |
| TCGGTTTATAACATCGGAAT+TGG | + | chr8_1:8256916-8256935 | Msa1176200:CDS | 35.0% | |
| ! | GGACGTTCATATTCATTTTC+CGG | + | chr8_1:8257084-8257103 | Msa1176200:CDS | 35.0% |
| GAATAGTTACTTAGGTGTGA+AGG | + | chr8_1:8257138-8257157 | Msa1176200:CDS | 35.0% | |
| ! | ATGGTTTTTCTACGGATTTG+AGG | + | chr8_1:8257398-8257417 | Msa1176200:CDS | 35.0% |
| ACGGATTTGAGGAAGATTTA+TGG | + | chr8_1:8257409-8257428 | Msa1176200:CDS | 35.0% | |
| GAATGTTAAGAGGAATAGGT+CGG | + | chr8_1:8257447-8257466 | Msa1176200:CDS | 35.0% | |
| AATGTTAAGAGGAATAGGTC+GGG | + | chr8_1:8257448-8257467 | Msa1176200:CDS | 35.0% | |
| GAATAGGTCGGGTAATTTAT+TGG | + | chr8_1:8257459-8257478 | Msa1176200:CDS | 35.0% | |
| AAAACCGAACCAAATCAAAC+AGG | + | chr8_1:8256413-8256432 | Msa1176200:CDS | 35.0% | |
| ACAAATGCACCTGTTTGATT+TGG | - | chr8_1:8256425-8256444 | None:intergenic | 35.0% | |
| TCCGCTGAAATAGAATACAA+TGG | + | chr8_1:8256512-8256531 | Msa1176200:CDS | 35.0% | |
| GCCATTGTATTCTATTTCAG+CGG | - | chr8_1:8256516-8256535 | None:intergenic | 35.0% | |
| CGTTTGTTCGTTAATATCAC+CGG | + | chr8_1:8256548-8256567 | Msa1176200:CDS | 35.0% | |
| ATAAAAGAATCGGTCGTGTT+TGG | + | chr8_1:8256708-8256727 | Msa1176200:CDS | 35.0% | |
| ! | AAACGGAGCTTCTTGTTATA+CGG | + | chr8_1:8256731-8256750 | Msa1176200:CDS | 35.0% |
| ! | TTCTTGTTATACGGTGAATC+CGG | + | chr8_1:8256740-8256759 | Msa1176200:CDS | 35.0% |
| ! | TGCAACAAAGCTAGATTTTC+CGG | - | chr8_1:8256768-8256787 | None:intergenic | 35.0% |
| ! | TCTCGATCGGTTTATAACAT+CGG | + | chr8_1:8256910-8256929 | Msa1176200:CDS | 35.0% |
| TCGGTTTATAACATCGGAAT+TGG | + | chr8_1:8256916-8256935 | Msa1176200:CDS | 35.0% | |
| ! | GGACGTTCATATTCATTTTC+CGG | + | chr8_1:8257084-8257103 | Msa1176200:CDS | 35.0% |
| GAATAGTTACTTAGGTGTGA+AGG | + | chr8_1:8257138-8257157 | Msa1176200:CDS | 35.0% | |
| ! | ATGGTTTTTCTACGGATTTG+AGG | + | chr8_1:8257398-8257417 | Msa1176200:CDS | 35.0% |
| ACGGATTTGAGGAAGATTTA+TGG | + | chr8_1:8257409-8257428 | Msa1176200:CDS | 35.0% | |
| GAATGTTAAGAGGAATAGGT+CGG | + | chr8_1:8257447-8257466 | Msa1176200:CDS | 35.0% | |
| AATGTTAAGAGGAATAGGTC+GGG | + | chr8_1:8257448-8257467 | Msa1176200:CDS | 35.0% | |
| GAATAGGTCGGGTAATTTAT+TGG | + | chr8_1:8257459-8257478 | Msa1176200:CDS | 35.0% | |
| AAGTCGGAATCTTCAAGAGA+AGG | - | chr8_1:8256284-8256303 | None:intergenic | 40.0% | |
| GGTAATGAGATTGGTGAAGT+CGG | - | chr8_1:8256300-8256319 | None:intergenic | 40.0% | |
| GACTTCACCAATCTCATTAC+CGG | + | chr8_1:8256299-8256318 | Msa1176200:CDS | 40.0% | |
| CCTGTCTTCGATGATTTGAT+CGG | - | chr8_1:8256360-8256379 | None:intergenic | 40.0% | |
| ATCATCGAAGACAGGTTTCT+CGG | + | chr8_1:8256365-8256384 | Msa1176200:CDS | 40.0% | |
| !! | TGCACCTGTTTGATTTGGTT+CGG | - | chr8_1:8256420-8256439 | None:intergenic | 40.0% |
| GCTGAGTATTCTGCGTTTAT+CGG | - | chr8_1:8256465-8256484 | None:intergenic | 40.0% | |
| GTATTCTATTTCAGCGGACA+TGG | - | chr8_1:8256510-8256529 | None:intergenic | 40.0% | |
| ! | AAAGCTAGATTTTCCGGTAC+CGG | - | chr8_1:8256762-8256781 | None:intergenic | 40.0% |
| AACATCGGAATTGGAATCTC+CGG | + | chr8_1:8256925-8256944 | Msa1176200:CDS | 40.0% | |
| GGGATTCAGAATTTCATGGA+CGG | + | chr8_1:8256965-8256984 | Msa1176200:CDS | 40.0% | |
| GCTTTGGCGAATAGTTACTT+AGG | + | chr8_1:8257130-8257149 | Msa1176200:CDS | 40.0% | |
| !! | GAAGGAACACAAGCTTTTTC+CGG | + | chr8_1:8257156-8257175 | Msa1176200:CDS | 40.0% |
| !! | GTGAGTTGATGATTGCGAAT+CGG | + | chr8_1:8257230-8257249 | Msa1176200:CDS | 40.0% |
| CGGGCTATTAAATCGGTAAT+CGG | + | chr8_1:8257265-8257284 | Msa1176200:CDS | 40.0% | |
| GGGCTATTAAATCGGTAATC+GGG | + | chr8_1:8257266-8257285 | Msa1176200:CDS | 40.0% | |
| GGCTATTAAATCGGTAATCG+GGG | + | chr8_1:8257267-8257286 | Msa1176200:CDS | 40.0% | |
| !! | AAATGGACGGTGATGGAAAA+GGG | + | chr8_1:8257296-8257315 | Msa1176200:CDS | 40.0% |
| GTGGAAGATGAAAGTAACCA+AGG | + | chr8_1:8257358-8257377 | Msa1176200:CDS | 40.0% | |
| ! | AGTAACCAAGGTGTTCTTTG+TGG | + | chr8_1:8257370-8257389 | Msa1176200:CDS | 40.0% |
| !!! | TGGTGGTGATGGTTTTTCTA+CGG | + | chr8_1:8257390-8257409 | Msa1176200:CDS | 40.0% |
| AAGTCGGAATCTTCAAGAGA+AGG | - | chr8_1:8256284-8256303 | None:intergenic | 40.0% | |
| GGTAATGAGATTGGTGAAGT+CGG | - | chr8_1:8256300-8256319 | None:intergenic | 40.0% | |
| GACTTCACCAATCTCATTAC+CGG | + | chr8_1:8256299-8256318 | Msa1176200:CDS | 40.0% | |
| CCTGTCTTCGATGATTTGAT+CGG | - | chr8_1:8256360-8256379 | None:intergenic | 40.0% | |
| ATCATCGAAGACAGGTTTCT+CGG | + | chr8_1:8256365-8256384 | Msa1176200:CDS | 40.0% | |
| !! | TGCACCTGTTTGATTTGGTT+CGG | - | chr8_1:8256420-8256439 | None:intergenic | 40.0% |
| GCTGAGTATTCTGCGTTTAT+CGG | - | chr8_1:8256465-8256484 | None:intergenic | 40.0% | |
| GTATTCTATTTCAGCGGACA+TGG | - | chr8_1:8256510-8256529 | None:intergenic | 40.0% | |
| ! | AAAGCTAGATTTTCCGGTAC+CGG | - | chr8_1:8256762-8256781 | None:intergenic | 40.0% |
| AACATCGGAATTGGAATCTC+CGG | + | chr8_1:8256925-8256944 | Msa1176200:CDS | 40.0% | |
| GGGATTCAGAATTTCATGGA+CGG | + | chr8_1:8256965-8256984 | Msa1176200:CDS | 40.0% | |
| GCTTTGGCGAATAGTTACTT+AGG | + | chr8_1:8257130-8257149 | Msa1176200:CDS | 40.0% | |
| !! | GAAGGAACACAAGCTTTTTC+CGG | + | chr8_1:8257156-8257175 | Msa1176200:CDS | 40.0% |
| !! | GTGAGTTGATGATTGCGAAT+CGG | + | chr8_1:8257230-8257249 | Msa1176200:CDS | 40.0% |
| CGGGCTATTAAATCGGTAAT+CGG | + | chr8_1:8257265-8257284 | Msa1176200:CDS | 40.0% | |
| GGGCTATTAAATCGGTAATC+GGG | + | chr8_1:8257266-8257285 | Msa1176200:CDS | 40.0% | |
| GGCTATTAAATCGGTAATCG+GGG | + | chr8_1:8257267-8257286 | Msa1176200:CDS | 40.0% | |
| !! | AAATGGACGGTGATGGAAAA+GGG | + | chr8_1:8257296-8257315 | Msa1176200:CDS | 40.0% |
| GTGGAAGATGAAAGTAACCA+AGG | + | chr8_1:8257358-8257377 | Msa1176200:CDS | 40.0% | |
| ! | AGTAACCAAGGTGTTCTTTG+TGG | + | chr8_1:8257370-8257389 | Msa1176200:CDS | 40.0% |
| !!! | TGGTGGTGATGGTTTTTCTA+CGG | + | chr8_1:8257390-8257409 | Msa1176200:CDS | 40.0% |
| CCGATCAAATCATCGAAGAC+AGG | + | chr8_1:8256357-8256376 | Msa1176200:CDS | 45.0% | |
| TTCGTTAATATCACCGGCGA+TGG | + | chr8_1:8256554-8256573 | Msa1176200:CDS | 45.0% | |
| TCGTTAATATCACCGGCGAT+GGG | + | chr8_1:8256555-8256574 | Msa1176200:CDS | 45.0% | |
| GAATCGGTCGTGTTTGGAAA+CGG | + | chr8_1:8256714-8256733 | Msa1176200:CDS | 45.0% | |
| TTATACGGTGAATCCGGTAC+CGG | + | chr8_1:8256746-8256765 | Msa1176200:CDS | 45.0% | |
| !! | ATCTAGCTTTGTTGCAGCCA+TGG | + | chr8_1:8256772-8256791 | Msa1176200:CDS | 45.0% |
| TCGTTGTTGAGGATCTCGAT+CGG | + | chr8_1:8256897-8256916 | Msa1176200:CDS | 45.0% | |
| CGACTAGGTCGGAGAAAATT+CGG | - | chr8_1:8257061-8257080 | None:intergenic | 45.0% | |
| ATATGAACGTCCACACGACT+AGG | - | chr8_1:8257076-8257095 | None:intergenic | 45.0% | |
| ! | ACCGATTTAATAGCCCGACT+CGG | - | chr8_1:8257262-8257281 | None:intergenic | 45.0% |
| !! | CAAATGGACGGTGATGGAAA+AGG | + | chr8_1:8257295-8257314 | Msa1176200:CDS | 45.0% |
| ! | AACCAAGGTGTTCTTTGTGG+TGG | + | chr8_1:8257373-8257392 | Msa1176200:CDS | 45.0% |
| CCGATCAAATCATCGAAGAC+AGG | + | chr8_1:8256357-8256376 | Msa1176200:CDS | 45.0% | |
| TTCGTTAATATCACCGGCGA+TGG | + | chr8_1:8256554-8256573 | Msa1176200:CDS | 45.0% | |
| TCGTTAATATCACCGGCGAT+GGG | + | chr8_1:8256555-8256574 | Msa1176200:CDS | 45.0% | |
| GAATCGGTCGTGTTTGGAAA+CGG | + | chr8_1:8256714-8256733 | Msa1176200:CDS | 45.0% | |
| TTATACGGTGAATCCGGTAC+CGG | + | chr8_1:8256746-8256765 | Msa1176200:CDS | 45.0% | |
| !! | ATCTAGCTTTGTTGCAGCCA+TGG | + | chr8_1:8256772-8256791 | Msa1176200:CDS | 45.0% |
| TCGTTGTTGAGGATCTCGAT+CGG | + | chr8_1:8256897-8256916 | Msa1176200:CDS | 45.0% | |
| CGACTAGGTCGGAGAAAATT+CGG | - | chr8_1:8257061-8257080 | None:intergenic | 45.0% | |
| ATATGAACGTCCACACGACT+AGG | - | chr8_1:8257076-8257095 | None:intergenic | 45.0% | |
| ! | ACCGATTTAATAGCCCGACT+CGG | - | chr8_1:8257262-8257281 | None:intergenic | 45.0% |
| !! | CAAATGGACGGTGATGGAAA+AGG | + | chr8_1:8257295-8257314 | Msa1176200:CDS | 45.0% |
| ! | AACCAAGGTGTTCTTTGTGG+TGG | + | chr8_1:8257373-8257392 | Msa1176200:CDS | 45.0% |
| CGTTAATATCACCGGCGATG+GGG | + | chr8_1:8256556-8256575 | Msa1176200:CDS | 50.0% | |
| GTTAATATCACCGGCGATGG+GGG | + | chr8_1:8256557-8256576 | Msa1176200:CDS | 50.0% | |
| GGAATTGGAATCTCCGGCAA+CGG | + | chr8_1:8256931-8256950 | Msa1176200:CDS | 50.0% | |
| GGCGGGGATTCAGAATTTCA+TGG | + | chr8_1:8256961-8256980 | Msa1176200:CDS | 50.0% | |
| ! | TTTTCTCCGACCTAGTCGTG+TGG | + | chr8_1:8257063-8257082 | Msa1176200:CDS | 50.0% |
| !! | GGAACACAAGCTTTTTCCGG+CGG | + | chr8_1:8257159-8257178 | Msa1176200:CDS | 50.0% |
| ATCAACTCACCTATCTCCGC+CGG | - | chr8_1:8257220-8257239 | None:intergenic | 50.0% | |
| GCCGAGTCGGGCTATTAAAT+CGG | + | chr8_1:8257258-8257277 | Msa1176200:CDS | 50.0% | |
| !! | GGTAATCGGGGCATTGCAAA+TGG | + | chr8_1:8257279-8257298 | Msa1176200:CDS | 50.0% |
| !! | ATCGGGGCATTGCAAATGGA+CGG | + | chr8_1:8257283-8257302 | Msa1176200:CDS | 50.0% |
| GCATTGCAAATGGACGGTGA+TGG | + | chr8_1:8257289-8257308 | Msa1176200:CDS | 50.0% | |
| !! | ACGGTGATGGAAAAGGGTGT+GGG | + | chr8_1:8257302-8257321 | Msa1176200:CDS | 50.0% |
| GGTGTGGGGATATGATCGTA+CGG | + | chr8_1:8257317-8257336 | Msa1176200:CDS | 50.0% | |
| TATGATCGTACGGCGGATAG+AGG | + | chr8_1:8257327-8257346 | Msa1176200:CDS | 50.0% | |
| CACCACCACAAAGAACACCT+TGG | - | chr8_1:8257378-8257397 | None:intergenic | 50.0% | |
| ! | GGTGTTCTTTGTGGTGGTGA+TGG | + | chr8_1:8257379-8257398 | Msa1176200:CDS | 50.0% |
| CGTTAATATCACCGGCGATG+GGG | + | chr8_1:8256556-8256575 | Msa1176200:CDS | 50.0% | |
| GTTAATATCACCGGCGATGG+GGG | + | chr8_1:8256557-8256576 | Msa1176200:CDS | 50.0% | |
| GGAATTGGAATCTCCGGCAA+CGG | + | chr8_1:8256931-8256950 | Msa1176200:CDS | 50.0% | |
| GGCGGGGATTCAGAATTTCA+TGG | + | chr8_1:8256961-8256980 | Msa1176200:CDS | 50.0% | |
| ! | TTTTCTCCGACCTAGTCGTG+TGG | + | chr8_1:8257063-8257082 | Msa1176200:CDS | 50.0% |
| !! | GGAACACAAGCTTTTTCCGG+CGG | + | chr8_1:8257159-8257178 | Msa1176200:CDS | 50.0% |
| ATCAACTCACCTATCTCCGC+CGG | - | chr8_1:8257220-8257239 | None:intergenic | 50.0% | |
| GCCGAGTCGGGCTATTAAAT+CGG | + | chr8_1:8257258-8257277 | Msa1176200:CDS | 50.0% | |
| !! | GGTAATCGGGGCATTGCAAA+TGG | + | chr8_1:8257279-8257298 | Msa1176200:CDS | 50.0% |
| !! | ATCGGGGCATTGCAAATGGA+CGG | + | chr8_1:8257283-8257302 | Msa1176200:CDS | 50.0% |
| GCATTGCAAATGGACGGTGA+TGG | + | chr8_1:8257289-8257308 | Msa1176200:CDS | 50.0% | |
| !! | ACGGTGATGGAAAAGGGTGT+GGG | + | chr8_1:8257302-8257321 | Msa1176200:CDS | 50.0% |
| GGTGTGGGGATATGATCGTA+CGG | + | chr8_1:8257317-8257336 | Msa1176200:CDS | 50.0% | |
| TATGATCGTACGGCGGATAG+AGG | + | chr8_1:8257327-8257346 | Msa1176200:CDS | 50.0% | |
| CACCACCACAAAGAACACCT+TGG | - | chr8_1:8257378-8257397 | None:intergenic | 50.0% | |
| ! | GGTGTTCTTTGTGGTGGTGA+TGG | + | chr8_1:8257379-8257398 | Msa1176200:CDS | 50.0% |
| TTCTCGGCGCCACGGTTTAT+TGG | + | chr8_1:8256381-8256400 | Msa1176200:CDS | 55.0% | |
| GGAATCTCCGGCAACGGTTA+CGG | + | chr8_1:8256937-8256956 | Msa1176200:CDS | 55.0% | |
| GAACGTCCACACGACTAGGT+CGG | - | chr8_1:8257072-8257091 | None:intergenic | 55.0% | |
| !! | ACACAAGCTTTTTCCGGCGG+TGG | + | chr8_1:8257162-8257181 | Msa1176200:CDS | 55.0% |
| ! | GTGGAGGAGATTTTCCGGCA+GGG | + | chr8_1:8257181-8257200 | Msa1176200:CDS | 55.0% |
| AGTTTGAGTCCGGCGGAGAT+AGG | + | chr8_1:8257208-8257227 | Msa1176200:CDS | 55.0% | |
| !! | GACGGTGATGGAAAAGGGTG+TGG | + | chr8_1:8257301-8257320 | Msa1176200:CDS | 55.0% |
| !! | CGGTGATGGAAAAGGGTGTG+GGG | + | chr8_1:8257303-8257322 | Msa1176200:CDS | 55.0% |
| GTGGGGATATGATCGTACGG+CGG | + | chr8_1:8257320-8257339 | Msa1176200:CDS | 55.0% | |
| ! | GCGGATAGAGGATGATGACG+TGG | + | chr8_1:8257339-8257358 | Msa1176200:CDS | 55.0% |
| TTCTCGGCGCCACGGTTTAT+TGG | + | chr8_1:8256381-8256400 | Msa1176200:CDS | 55.0% | |
| GGAATCTCCGGCAACGGTTA+CGG | + | chr8_1:8256937-8256956 | Msa1176200:CDS | 55.0% | |
| GAACGTCCACACGACTAGGT+CGG | - | chr8_1:8257072-8257091 | None:intergenic | 55.0% | |
| !! | ACACAAGCTTTTTCCGGCGG+TGG | + | chr8_1:8257162-8257181 | Msa1176200:CDS | 55.0% |
| ! | GTGGAGGAGATTTTCCGGCA+GGG | + | chr8_1:8257181-8257200 | Msa1176200:CDS | 55.0% |
| AGTTTGAGTCCGGCGGAGAT+AGG | + | chr8_1:8257208-8257227 | Msa1176200:CDS | 55.0% | |
| !! | GACGGTGATGGAAAAGGGTG+TGG | + | chr8_1:8257301-8257320 | Msa1176200:CDS | 55.0% |
| !! | CGGTGATGGAAAAGGGTGTG+GGG | + | chr8_1:8257303-8257322 | Msa1176200:CDS | 55.0% |
| GTGGGGATATGATCGTACGG+CGG | + | chr8_1:8257320-8257339 | Msa1176200:CDS | 55.0% | |
| ! | GCGGATAGAGGATGATGACG+TGG | + | chr8_1:8257339-8257358 | Msa1176200:CDS | 55.0% |
| AGACAGGTTTCTCGGCGCCA+CGG | + | chr8_1:8256373-8256392 | Msa1176200:CDS | 60.0% | |
| AATATCACCGGCGATGGGGG+TGG | + | chr8_1:8256560-8256579 | Msa1176200:CDS | 60.0% | |
| ATCTCCGGCAACGGTTACGG+CGG | + | chr8_1:8256940-8256959 | Msa1176200:CDS | 60.0% | |
| !! | CAAGCTTTTTCCGGCGGTGG+AGG | + | chr8_1:8257165-8257184 | Msa1176200:CDS | 60.0% |
| CGGAAAATCTCCTCCACCGC+CGG | - | chr8_1:8257178-8257197 | None:intergenic | 60.0% | |
| ! | CGGCGGTGGAGGAGATTTTC+CGG | + | chr8_1:8257176-8257195 | Msa1176200:CDS | 60.0% |
| ! | GGTGGAGGAGATTTTCCGGC+AGG | + | chr8_1:8257180-8257199 | Msa1176200:CDS | 60.0% |
| GACTCAAACTCGCTCCCTGC+CGG | - | chr8_1:8257198-8257217 | None:intergenic | 60.0% | |
| GCAGGGAGCGAGTTTGAGTC+CGG | + | chr8_1:8257198-8257217 | Msa1176200:CDS | 60.0% | |
| CGAATCGGAACTCGCCGAGT+CGG | + | chr8_1:8257245-8257264 | Msa1176200:CDS | 60.0% | |
| GAATCGGAACTCGCCGAGTC+GGG | + | chr8_1:8257246-8257265 | Msa1176200:CDS | 60.0% | |
| AGACAGGTTTCTCGGCGCCA+CGG | + | chr8_1:8256373-8256392 | Msa1176200:CDS | 60.0% | |
| AATATCACCGGCGATGGGGG+TGG | + | chr8_1:8256560-8256579 | Msa1176200:CDS | 60.0% | |
| ATCTCCGGCAACGGTTACGG+CGG | + | chr8_1:8256940-8256959 | Msa1176200:CDS | 60.0% | |
| !! | CAAGCTTTTTCCGGCGGTGG+AGG | + | chr8_1:8257165-8257184 | Msa1176200:CDS | 60.0% |
| CGGAAAATCTCCTCCACCGC+CGG | - | chr8_1:8257178-8257197 | None:intergenic | 60.0% | |
| ! | CGGCGGTGGAGGAGATTTTC+CGG | + | chr8_1:8257176-8257195 | Msa1176200:CDS | 60.0% |
| ! | GGTGGAGGAGATTTTCCGGC+AGG | + | chr8_1:8257180-8257199 | Msa1176200:CDS | 60.0% |
| GACTCAAACTCGCTCCCTGC+CGG | - | chr8_1:8257198-8257217 | None:intergenic | 60.0% | |
| GCAGGGAGCGAGTTTGAGTC+CGG | + | chr8_1:8257198-8257217 | Msa1176200:CDS | 60.0% | |
| CGAATCGGAACTCGCCGAGT+CGG | + | chr8_1:8257245-8257264 | Msa1176200:CDS | 60.0% | |
| GAATCGGAACTCGCCGAGTC+GGG | + | chr8_1:8257246-8257265 | Msa1176200:CDS | 60.0% | |
| !! | ATGGGGGTGGTGGAAGGAGG+TGG | + | chr8_1:8256573-8256592 | Msa1176200:CDS | 65.0% |
| GGGAGCGAGTTTGAGTCCGG+CGG | + | chr8_1:8257201-8257220 | Msa1176200:CDS | 65.0% | |
| !! | ATGGGGGTGGTGGAAGGAGG+TGG | + | chr8_1:8256573-8256592 | Msa1176200:CDS | 65.0% |
| GGGAGCGAGTTTGAGTCCGG+CGG | + | chr8_1:8257201-8257220 | Msa1176200:CDS | 65.0% | |
| ATCACCGGCGATGGGGGTGG+TGG | + | chr8_1:8256563-8256582 | Msa1176200:CDS | 70.0% | |
| CCTTCCACCACCCCCATCGC+CGG | - | chr8_1:8256570-8256589 | None:intergenic | 70.0% | |
| !! | GCGATGGGGGTGGTGGAAGG+AGG | + | chr8_1:8256570-8256589 | Msa1176200:CDS | 70.0% |
| !! | GGGGTGGTGGAAGGAGGTGG+AGG | + | chr8_1:8256576-8256595 | Msa1176200:CDS | 70.0% |
| TCCGGCAACGGTTACGGCGG+CGG | + | chr8_1:8256943-8256962 | Msa1176200:CDS | 70.0% | |
| ATCACCGGCGATGGGGGTGG+TGG | + | chr8_1:8256563-8256582 | Msa1176200:CDS | 70.0% | |
| CCTTCCACCACCCCCATCGC+CGG | - | chr8_1:8256570-8256589 | None:intergenic | 70.0% | |
| !! | GCGATGGGGGTGGTGGAAGG+AGG | + | chr8_1:8256570-8256589 | Msa1176200:CDS | 70.0% |
| !! | GGGGTGGTGGAAGGAGGTGG+AGG | + | chr8_1:8256576-8256595 | Msa1176200:CDS | 70.0% |
| TCCGGCAACGGTTACGGCGG+CGG | + | chr8_1:8256943-8256962 | Msa1176200:CDS | 70.0% | |
| !! | CCGGCGATGGGGGTGGTGGA+AGG | + | chr8_1:8256567-8256586 | Msa1176200:CDS | 75.0% |
| CCCGCCGCCGTAACCGTTGC+CGG | - | chr8_1:8256947-8256966 | None:intergenic | 75.0% | |
| CCGGCAACGGTTACGGCGGC+GGG | + | chr8_1:8256944-8256963 | Msa1176200:CDS | 75.0% | |
| CGGCAACGGTTACGGCGGCG+GGG | + | chr8_1:8256945-8256964 | Msa1176200:CDS | 75.0% | |
| !! | CCGGCGATGGGGGTGGTGGA+AGG | + | chr8_1:8256567-8256586 | Msa1176200:CDS | 75.0% |
| CCCGCCGCCGTAACCGTTGC+CGG | - | chr8_1:8256947-8256966 | None:intergenic | 75.0% | |
| CCGGCAACGGTTACGGCGGC+GGG | + | chr8_1:8256944-8256963 | Msa1176200:CDS | 75.0% | |
| CGGCAACGGTTACGGCGGCG+GGG | + | chr8_1:8256945-8256964 | Msa1176200:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 8256230 | 8257501 | 8256230 | ID=Msa1176200;Name=Msa1176200 |
| chr8_1 | mRNA | 8256230 | 8257501 | 8256230 | ID=Msa1176200-mRNA-1;Parent=Msa1176200;Name=Msa1176200-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|-1|0|1|-1|1|1|0|423 |
| chr8_1 | exon | 8256230 | 8257501 | 8256230 | ID=Msa1176200-mRNA-1:exon:2807;Parent=Msa1176200-mRNA-1 |
| chr8_1 | CDS | 8256230 | 8257501 | 8256230 | ID=Msa1176200-mRNA-1:cds;Parent=Msa1176200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
