AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0187490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0187490 MtrunA17_Chr7g0254541 97.799 318 7 0 1 318 1 318 0.0 647
Msa0187490 MtrunA17_Chr4g0022101 61.215 214 82 1 105 317 19 232 3.83e-91 271
Msa0187490 MtrunA17_Chr8g0335681 55.328 244 93 3 81 317 26 260 3.85e-89 267
Msa0187490 MtrunA17_Chr7g0250291 54.008 237 108 1 81 317 29 264 4.91e-82 249
Msa0187490 MtrunA17_Chr3g0122601 57.277 213 90 1 106 317 48 260 2.35e-76 234
Msa0187490 MtrunA17_Chr0c29g0494021 53.933 89 41 0 229 317 1 89 1.05e-23 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0187490 AT3G03610.1 70.370 324 86 2 1 317 1 321 1.62e-170 476
Msa0187490 AT3G03610.3 70.370 324 86 2 1 317 1 321 1.62e-170 476
Msa0187490 AT3G03610.2 70.370 324 86 2 1 317 1 321 1.62e-170 476
Msa0187490 AT3G03610.4 70.370 324 86 2 1 317 13 333 2.04e-170 476
Msa0187490 AT1G03620.12 56.863 255 100 4 70 317 44 295 2.20e-94 282
Msa0187490 AT1G03620.3 59.149 235 91 2 84 317 1 231 2.67e-94 279
Msa0187490 AT1G03620.6 59.149 235 91 2 84 317 1 231 2.67e-94 279
Msa0187490 AT1G03620.2 59.149 235 91 2 84 317 1 231 2.67e-94 279
Msa0187490 AT1G03620.8 58.824 238 93 2 81 317 30 263 3.68e-94 280
Msa0187490 AT1G03620.10 58.824 238 93 2 81 317 30 263 3.68e-94 280
Msa0187490 AT1G03620.9 58.824 238 93 2 81 317 30 263 3.68e-94 280
Msa0187490 AT1G03620.1 58.824 238 93 2 81 317 30 263 3.68e-94 280
Msa0187490 AT1G03620.7 58.824 238 93 2 81 317 30 263 3.68e-94 280
Msa0187490 AT1G03620.4 58.824 238 93 2 81 317 30 263 3.68e-94 280
Msa0187490 AT1G03620.5 58.824 238 93 2 81 317 30 263 3.68e-94 280
Msa0187490 AT1G03620.11 58.824 238 93 2 81 317 30 263 3.68e-94 280
Msa0187490 AT1G03620.13 58.824 238 93 2 81 317 30 263 3.68e-94 280
Msa0187490 AT3G60260.3 57.083 240 98 2 80 317 6 242 1.50e-91 273
Msa0187490 AT3G60260.2 57.500 240 95 3 81 317 29 264 1.56e-91 273
Msa0187490 AT3G60260.4 57.500 240 95 3 81 317 29 264 1.56e-91 273
Msa0187490 AT3G60260.1 57.500 240 95 3 81 317 29 264 1.56e-91 273
Msa0187490 AT1G67400.1 59.615 208 84 0 110 317 73 280 7.63e-89 267
Msa0187490 AT2G44770.1 55.696 237 104 1 81 317 29 264 8.27e-88 264
Msa0187490 AT3G43400.1 62.590 139 48 1 152 290 73 207 5.11e-55 178

Find 82 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAGATTATTCTGATATT+TGG 0.132675 2_1:-2255143 None:intergenic
CTAACAAATGCTTAAATAAA+AGG 0.136455 2_1:-2255181 None:intergenic
GAATACTTTACATACATTTA+AGG 0.163997 2_1:-2255069 None:intergenic
CGTTTCACTCGTTGAAATTC+AGG 0.193695 2_1:+2250181 Msa0187490:five_prime_UTR
CAGGAACATTTGGATACTTC+TGG 0.260450 2_1:+2250728 Msa0187490:CDS
TTTGCAGCAAACATTGTTCT+AGG 0.262576 2_1:+2251959 Msa0187490:intron
ACGAGTGAAACGAATCTCTT+TGG 0.304602 2_1:-2250170 None:intergenic
TTCATTGAATGAACCGTTGC+TGG 0.321817 2_1:+2250757 Msa0187490:CDS
ATCAGATTGTTGGAAGGAAA+TGG 0.322781 2_1:+2253364 Msa0187490:CDS
AGCAAAGCGTGCTACATATA+TGG 0.332900 2_1:+2254781 Msa0187490:CDS
CATGTAAATCACAAGTGAAA+TGG 0.357229 2_1:+2255115 Msa0187490:three_prime_UTR
ATGTAAATCACAAGTGAAAT+GGG 0.362888 2_1:+2255116 Msa0187490:three_prime_UTR
TGGAAAACGGCAGGAACATT+TGG 0.381041 2_1:+2250718 Msa0187490:CDS
ACCATGGTTTGCAGGGGTGG+AGG 0.391694 2_1:+2253857 Msa0187490:intron
CTCCACTTAAATCAGATTGT+TGG 0.392141 2_1:+2253354 Msa0187490:CDS
CGGCTTGAAGTTCCCTTTGA+CGG 0.402080 2_1:+2252820 Msa0187490:CDS
TAACAAATGCTTAAATAAAA+GGG 0.404789 2_1:-2255180 None:intergenic
GCAAACATTGTTCTAGGGTC+TGG 0.406999 2_1:+2251965 Msa0187490:intron
TTCGAACCTCATTGCGCAAT+GGG 0.413507 2_1:+2250974 Msa0187490:CDS
CCATGGTTTGCAGGGGTGGA+GGG 0.415346 2_1:+2253858 Msa0187490:intron
TTGATTCCAGCTACTGCAAA+TGG 0.423995 2_1:-2254074 None:intergenic
ATTTATGTTGGTGCAGATGC+TGG 0.425464 2_1:+2254103 Msa0187490:CDS
GAAAGAAGGCGCAAATTCAT+TGG 0.426457 2_1:+2250940 Msa0187490:CDS
TTGCATTGCCTTTCAAATGA+TGG 0.429352 2_1:+2254745 Msa0187490:CDS
ACACACCTAAAATCTGTTGA+TGG 0.432758 2_1:-2253404 None:intergenic
ATACTATAATTGTTTACTAT+AGG 0.433162 2_1:-2250646 None:intergenic
TCAGATTGTTGGAAGGAAAT+GGG 0.433239 2_1:+2253365 Msa0187490:CDS
TTCCAACAATCTGATTTAAG+TGG 0.437679 2_1:-2253356 None:intergenic
GCGCAATGGGCACAGTGGTT+AGG 0.448913 2_1:+2250987 Msa0187490:CDS
GTTGTTCCATCTTCTTCGTC+GGG 0.460134 2_1:+2254668 Msa0187490:intron
ATCTCTATACATACCTGCAC+AGG 0.463215 2_1:-2252070 None:intergenic
AGTTGTTCCATCTTCTTCGT+CGG 0.478166 2_1:+2254667 Msa0187490:intron
GCTGCTTGAGGAGGATGAAA+TGG 0.495909 2_1:+2254706 Msa0187490:CDS
TTCCATCGACATCCCCGTGA+TGG 0.495966 2_1:-2250700 None:intergenic
CAGATGCTGGATCTTCAATC+AGG 0.501555 2_1:+2254116 Msa0187490:CDS
TATGTACACTTGAAGATTTG+TGG 0.503025 2_1:+2250907 Msa0187490:CDS
GAATATCCATTTGCAGTAGC+TGG 0.503288 2_1:+2254068 Msa0187490:CDS
CATATTCCCGACGAAGAAGA+TGG 0.508986 2_1:-2254674 None:intergenic
CTCCAGTATAAAAGATATAC+CGG 0.509227 2_1:+2254969 Msa0187490:CDS
TTGCAGCAAACATTGTTCTA+GGG 0.519074 2_1:+2251960 Msa0187490:intron
AGTGGAGGAAGCTCTCGGTC+AGG 0.522963 2_1:-2253338 None:intergenic
AATCAATATCTCATTTATGT+TGG 0.524266 2_1:+2254091 Msa0187490:CDS
TCCAACACTTAGCCCTGTGC+AGG 0.527434 2_1:+2252057 Msa0187490:CDS
ACGGGGATGTCGATGGAAAA+CGG 0.534153 2_1:+2250705 Msa0187490:CDS
CAACAATCTGATTTAAGTGG+AGG 0.536607 2_1:-2253353 None:intergenic
TGCACAGGGCTAAGTGTTGG+AGG 0.541071 2_1:-2252055 None:intergenic
CTCCATCACGGGGATGTCGA+TGG 0.541121 2_1:+2250698 Msa0187490:CDS
TTTCGAACCTCATTGCGCAA+TGG 0.542371 2_1:+2250973 Msa0187490:CDS
AACAGCTCAAACGTGTGCTG+TGG 0.546422 2_1:-2249996 None:intergenic
CGATTATTGCACAAACAAGA+TGG 0.547169 2_1:+2254029 Msa0187490:CDS
TTACTTGCAAAATAATAGGA+TGG 0.547517 2_1:+2252030 Msa0187490:CDS
ACCTGCACAGGGCTAAGTGT+TGG 0.548439 2_1:-2252058 None:intergenic
ATGGATATTCCCACTCTGCT+CGG 0.549193 2_1:-2254055 None:intergenic
ATGTACACTTGAAGATTTGT+GGG 0.552958 2_1:+2250908 Msa0187490:CDS
CACACCTAAAATCTGTTGAT+GGG 0.557506 2_1:-2253403 None:intergenic
TGAGGAGAAGACTCCATCAC+GGG 0.558881 2_1:+2250687 Msa0187490:CDS
CATCTCAACATGTTGTGAGC+CGG 0.561847 2_1:-2254988 None:intergenic
TCATTGAATGAACCGTTGCT+GGG 0.564464 2_1:+2250758 Msa0187490:CDS
CTGAGCATCCATCATTTGAA+AGG 0.566308 2_1:-2254753 None:intergenic
GACTAAGAAACTTAAAGCAA+CGG 0.573979 2_1:+2252800 Msa0187490:CDS
TGGAAGGAAATGGGATGGCA+AGG 0.585634 2_1:+2253374 Msa0187490:CDS
GGATGTCGATGGAAAACGGC+AGG 0.585718 2_1:+2250709 Msa0187490:CDS
TGATTATATCGAGAGTAAGA+AGG 0.589254 2_1:+2250787 Msa0187490:CDS
AGTTAAAATAAATAAATGAA+AGG 0.592988 2_1:-2250049 None:intergenic
GTGGGATGATGAGAGAAAGA+AGG 0.593292 2_1:+2250926 Msa0187490:CDS
ACAGCTCAAACGTGTGCTGT+GGG 0.595203 2_1:-2249995 None:intergenic
AACAAATGCTTAAATAAAAG+GGG 0.595384 2_1:-2255179 None:intergenic
ATTTAAGTGGAGGAAGCTCT+CGG 0.606705 2_1:-2253343 None:intergenic
ACTTAAATCAGATTGTTGGA+AGG 0.607130 2_1:+2253358 Msa0187490:CDS
AGATGGAATCCGAGCAGAGT+GGG 0.614159 2_1:+2254046 Msa0187490:CDS
TGTAAATCACAAGTGAAATG+GGG 0.618313 2_1:+2255117 Msa0187490:three_prime_UTR
TAATCATCACCTCCCAGCAA+CGG 0.628970 2_1:-2250770 None:intergenic
ACTGTGCCCATTGCGCAATG+AGG 0.645478 2_1:-2250980 None:intergenic
ATTGTTGGAAGGAAATGGGA+TGG 0.650850 2_1:+2253369 Msa0187490:CDS
GTAAATCACAAGTGAAATGG+GGG 0.654503 2_1:+2255118 Msa0187490:three_prime_UTR
TTGAGGAGAAGACTCCATCA+CGG 0.656992 2_1:+2250686 Msa0187490:CDS
TTCAAATGATGGATGCTCAG+TGG 0.679437 2_1:+2254756 Msa0187490:CDS
TCTCTATACATACCTGCACA+GGG 0.703300 2_1:-2252069 None:intergenic
GAGGAGAAGACTCCATCACG+GGG 0.729277 2_1:+2250688 Msa0187490:CDS
AAGATGGAATCCGAGCAGAG+TGG 0.735731 2_1:+2254045 Msa0187490:CDS
TCATTGCGCAATGGGCACAG+TGG 0.737416 2_1:+2250982 Msa0187490:CDS
TTGAATGAACCGTTGCTGGG+AGG 0.740209 2_1:+2250761 Msa0187490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTAAAATAAATAAATGAA+AGG - chr2_1:2250052-2250071 None:intergenic 10.0%
!!! AATAACTGAATTTTTCAAAA+GGG - chr2_1:2250328-2250347 None:intergenic 15.0%
!!! AAATAACTGAATTTTTCAAA+AGG - chr2_1:2250329-2250348 None:intergenic 15.0%
!! ATACTATAATTGTTTACTAT+AGG - chr2_1:2250649-2250668 None:intergenic 15.0%
!!! AAAATAATCATTTTTAGGAT+TGG + chr2_1:2251292-2251311 Msa0187490:intron 15.0%
!! TAAGAATTGAATAAAAATCA+TGG - chr2_1:2251787-2251806 None:intergenic 15.0%
!!! ATTTAGATCAATTGTATTTT+CGG - chr2_1:2252171-2252190 None:intergenic 15.0%
!! ATATATATAAAGACAAATGT+TGG - chr2_1:2252900-2252919 None:intergenic 15.0%
!!! TATTTTTAATATCTGAATTG+TGG + chr2_1:2253056-2253075 Msa0187490:intron 15.0%
!!! ATTTTTAATATCTGAATTGT+GGG + chr2_1:2253057-2253076 Msa0187490:intron 15.0%
!!! TGTTTAATTGTTTTACTTTA+AGG + chr2_1:2253424-2253443 Msa0187490:intron 15.0%
!! AGTAATATTAAATGTATCTT+AGG - chr2_1:2254550-2254569 None:intergenic 15.0%
!!! AAAATTTTGCTATTTTCTTT+AGG + chr2_1:2254891-2254910 Msa0187490:intron 15.0%
!! TAACAAATGCTTAAATAAAA+GGG - chr2_1:2255183-2255202 None:intergenic 15.0%
!! GAAGTAACAAACAAAAATTA+GGG - chr2_1:2250143-2250162 None:intergenic 20.0%
!! TTCAAATCAAGAAAAACAAA+GGG - chr2_1:2250219-2250238 None:intergenic 20.0%
!! ATTCAAATCAAGAAAAACAA+AGG - chr2_1:2250220-2250239 None:intergenic 20.0%
!!! GTTTTTCTTGATTTGAATTT+CGG + chr2_1:2250222-2250241 Msa0187490:intron 20.0%
!! AATTTATTGAGTAATTGAAG+AGG + chr2_1:2250374-2250393 Msa0187490:intron 20.0%
!!! AACTAACTGAATTTTCAAAA+GGG - chr2_1:2250401-2250420 None:intergenic 20.0%
!!! AAACTAACTGAATTTTCAAA+AGG - chr2_1:2250402-2250421 None:intergenic 20.0%
!! TGTTTATCAAAATCTGAAAA+TGG + chr2_1:2250461-2250480 Msa0187490:intron 20.0%
!!! AAATATATTAAAGTGTTAGC+TGG + chr2_1:2250512-2250531 Msa0187490:intron 20.0%
!!! TGTATTTTTTTGACTTGTAT+AGG + chr2_1:2250619-2250638 Msa0187490:intron 20.0%
!!! AATTGTCGTTATTTTGTATT+TGG + chr2_1:2250815-2250834 Msa0187490:intron 20.0%
!!! CTGCTAAAATAATCATTTTT+AGG + chr2_1:2251287-2251306 Msa0187490:intron 20.0%
!! TATTAGTGTACTACATATTA+GGG + chr2_1:2251433-2251452 Msa0187490:intron 20.0%
!! TCAAAATGACAAAAAAATTG+TGG - chr2_1:2251674-2251693 None:intergenic 20.0%
!! AAATAAGAAGAAAATGCAAA+TGG + chr2_1:2251885-2251904 Msa0187490:intron 20.0%
!!! ATTATTTTGCAAGTAAAAAC+CGG - chr2_1:2252026-2252045 None:intergenic 20.0%
!!! GTTTTTACTTGCAAAATAAT+AGG + chr2_1:2252026-2252045 Msa0187490:CDS 20.0%
!! GTTAAACTTAAAGTTGAAAT+TGG - chr2_1:2252143-2252162 None:intergenic 20.0%
!!! ATATCATTTTCAAAAGACAA+AGG - chr2_1:2252263-2252282 None:intergenic 20.0%
!!! GGAATTTGATGATATATATT+TGG + chr2_1:2252434-2252453 Msa0187490:intron 20.0%
!! TCTTTGATTATAAATATCAC+AGG - chr2_1:2252538-2252557 None:intergenic 20.0%
!!! GAACAATCAATTTTAAATTG+TGG + chr2_1:2252566-2252585 Msa0187490:intron 20.0%
!! TATTTCTTTCTTTCTTTCTT+AGG + chr2_1:2252771-2252790 Msa0187490:intron 20.0%
!! AAATGCATTAAATACATACT+TGG - chr2_1:2252861-2252880 None:intergenic 20.0%
!!! TTTATTTATTTCTTTGTTGC+AGG + chr2_1:2253283-2253302 Msa0187490:intron 20.0%
!!! ATAAGGTTTTATTCAGTTAT+AGG + chr2_1:2253471-2253490 Msa0187490:intron 20.0%
!!! AAGTATTCTTTAGAAATACT+TGG + chr2_1:2253692-2253711 Msa0187490:intron 20.0%
!! TAATTTCAAAAAAACAGAGT+TGG - chr2_1:2253816-2253835 None:intergenic 20.0%
!!! ACTCTGTTTTTTTGAAATTA+TGG + chr2_1:2253816-2253835 Msa0187490:intron 20.0%
!! TATACATACAAAAGCAAATA+CGG - chr2_1:2253943-2253962 None:intergenic 20.0%
!! AATCAATATCTCATTTATGT+TGG + chr2_1:2254091-2254110 Msa0187490:CDS 20.0%
!!! GCATTATTATGTTTTTAGAT+TGG - chr2_1:2254289-2254308 None:intergenic 20.0%
!! TACATTTAATATTACTGTAG+CGG + chr2_1:2254554-2254573 Msa0187490:intron 20.0%
!!! AACATTTTCTAACTACAAAA+TGG - chr2_1:2255048-2255067 None:intergenic 20.0%
!! GAATACTTTACATACATTTA+AGG - chr2_1:2255072-2255091 None:intergenic 20.0%
!! AACAAATGCTTAAATAAAAG+GGG - chr2_1:2255182-2255201 None:intergenic 20.0%
!! CTAACAAATGCTTAAATAAA+AGG - chr2_1:2255184-2255203 None:intergenic 20.0%
! CGAAGTAACAAACAAAAATT+AGG - chr2_1:2250144-2250163 None:intergenic 25.0%
! GATTTGAATTTCGGTTTATT+CGG + chr2_1:2250231-2250250 Msa0187490:intron 25.0%
! GGTTAAATTTGTCAACTTTA+GGG + chr2_1:2250282-2250301 Msa0187490:intron 25.0%
! TAGTGAAAAACAATGTTAGA+CGG + chr2_1:2251098-2251117 Msa0187490:intron 25.0%
!! TTTTCCGTTAGTAATAGTTA+TGG + chr2_1:2251163-2251182 Msa0187490:intron 25.0%
! GTATTAGTGTACTACATATT+AGG + chr2_1:2251432-2251451 Msa0187490:intron 25.0%
! TTACTTGCAAAATAATAGGA+TGG + chr2_1:2252030-2252049 Msa0187490:CDS 25.0%
!! TGAAATTGGTTACTTGATTT+TGG - chr2_1:2252129-2252148 None:intergenic 25.0%
!! ATCAATTGTATTTTCGGATA+GGG - chr2_1:2252165-2252184 None:intergenic 25.0%
!!! AACACTTACTTGATAATGAT+AGG + chr2_1:2252316-2252335 Msa0187490:intron 25.0%
! TAATGATAGGATATTATCAC+TGG + chr2_1:2252329-2252348 Msa0187490:intron 25.0%
!! GAAAACAACGAGTAATTTTA+TGG - chr2_1:2252476-2252495 None:intergenic 25.0%
!!! AAATGTTGGTAATGTGATTA+GGG - chr2_1:2252886-2252905 None:intergenic 25.0%
! TATAACAAAATGGTATCAAG+AGG - chr2_1:2252974-2252993 None:intergenic 25.0%
!! GACATGTATAGCAATTTTAT+TGG - chr2_1:2253139-2253158 None:intergenic 25.0%
!!! ATTGTTTTACTTTAAGGAGA+TGG + chr2_1:2253430-2253449 Msa0187490:intron 25.0%
!!! TTGTTTTACTTTAAGGAGAT+GGG + chr2_1:2253431-2253450 Msa0187490:intron 25.0%
! ATAAAACCTTATCCATATTC+AGG - chr2_1:2253463-2253482 None:intergenic 25.0%
!!! AGGATTCATTGACTTAATAA+TGG + chr2_1:2253526-2253545 Msa0187490:intron 25.0%
!!! GGATTCATTGACTTAATAAT+GGG + chr2_1:2253527-2253546 Msa0187490:intron 25.0%
! GAATACTTGTGACATATATA+TGG - chr2_1:2253680-2253699 None:intergenic 25.0%
! AGTCTTTATAAAGATTATGC+AGG - chr2_1:2253754-2253773 None:intergenic 25.0%
! ACTAAAAGTTTCATCAAACT+TGG + chr2_1:2253775-2253794 Msa0187490:intron 25.0%
!!! CTGTTTTTTTGAAATTATGG+AGG + chr2_1:2253819-2253838 Msa0187490:intron 25.0%
!! TTTGAACCATTATTTTCACT+CGG - chr2_1:2254312-2254331 None:intergenic 25.0%
! AATAATGGTTCAAATCAAGT+TGG + chr2_1:2254318-2254337 Msa0187490:intron 25.0%
! ATCAACAATTGCTGAAAATA+AGG - chr2_1:2254586-2254605 None:intergenic 25.0%
!! GATTTTACATGAAAAATGAG+AGG - chr2_1:2254623-2254642 None:intergenic 25.0%
! ATTAAACTGTGTTTGTTCAT+TGG + chr2_1:2254822-2254841 Msa0187490:intron 25.0%
! TTATTAGCATTATTCTGTGA+TGG + chr2_1:2254854-2254873 Msa0187490:intron 25.0%
!!! TGCTCATTTTAGTTTAACAT+TGG + chr2_1:2255016-2255035 Msa0187490:three_prime_UTR 25.0%
! ATGTAAATCACAAGTGAAAT+GGG + chr2_1:2255116-2255135 Msa0187490:three_prime_UTR 25.0%
! CAGAAGATTATTCTGATATT+TGG - chr2_1:2255146-2255165 None:intergenic 25.0%
GGGTTAAATTTGTCAACTTT+AGG + chr2_1:2250281-2250300 Msa0187490:intron 30.0%
TTGATAAACACCAAACCATA+GGG - chr2_1:2250451-2250470 None:intergenic 30.0%
TTTGATAAACACCAAACCAT+AGG - chr2_1:2250452-2250471 None:intergenic 30.0%
! TTCTTGAACTTGATGGTTAT+GGG + chr2_1:2250585-2250604 Msa0187490:intron 30.0%
TGATGTCTTCAAAAACATTG+AGG + chr2_1:2250669-2250688 Msa0187490:exon 30.0%
TGATTATATCGAGAGTAAGA+AGG + chr2_1:2250787-2250806 Msa0187490:CDS 30.0%
!! TGTCGTTATTTTGTATTTGG+AGG + chr2_1:2250818-2250837 Msa0187490:intron 30.0%
!! GTCGTTATTTTGTATTTGGA+GGG + chr2_1:2250819-2250838 Msa0187490:intron 30.0%
TATGTACACTTGAAGATTTG+TGG + chr2_1:2250907-2250926 Msa0187490:CDS 30.0%
ATGTACACTTGAAGATTTGT+GGG + chr2_1:2250908-2250927 Msa0187490:CDS 30.0%
CGAATAAAATCCTATTCCAA+TGG + chr2_1:2251188-2251207 Msa0187490:intron 30.0%
! AATTGGCACTGAATTTAATG+AGG + chr2_1:2251384-2251403 Msa0187490:intron 30.0%
ATTAGGGTTGAATCTCATTA+AGG + chr2_1:2251449-2251468 Msa0187490:intron 30.0%
GGCTGACTATACAAAATTTA+GGG - chr2_1:2251653-2251672 None:intergenic 30.0%
TGGCTGACTATACAAAATTT+AGG - chr2_1:2251654-2251673 None:intergenic 30.0%
TTTCACAAGCTACATAAATG+AGG - chr2_1:2251813-2251832 None:intergenic 30.0%
! TATGTAGCTTGTGAAAAATC+CGG + chr2_1:2251817-2251836 Msa0187490:intron 30.0%
! CTATTTTCTTCATTGTTGAC+TGG + chr2_1:2251857-2251876 Msa0187490:intron 30.0%
! GATCAATTGTATTTTCGGAT+AGG - chr2_1:2252166-2252185 None:intergenic 30.0%
! CATTTTCAAAAGACAAAGGA+TGG - chr2_1:2252259-2252278 None:intergenic 30.0%
CACGTGATCTTTAGTTAAAA+AGG - chr2_1:2252501-2252520 None:intergenic 30.0%
TAAATGACATAACCACATGT+AGG - chr2_1:2252747-2252766 None:intergenic 30.0%
GACTAAGAAACTTAAAGCAA+CGG + chr2_1:2252800-2252819 Msa0187490:CDS 30.0%
!! CAAATGTTGGTAATGTGATT+AGG - chr2_1:2252887-2252906 None:intergenic 30.0%
! AGAGCATCACTATAACAAAA+TGG - chr2_1:2252984-2253003 None:intergenic 30.0%
TAATATCTGAATTGTGGGTA+TGG + chr2_1:2253062-2253081 Msa0187490:intron 30.0%
AATATCTGAATTGTGGGTAT+GGG + chr2_1:2253063-2253082 Msa0187490:intron 30.0%
TGGGGTTGTCAATTTATAAA+TGG + chr2_1:2253082-2253101 Msa0187490:intron 30.0%
! TCTTTTACAACTGTGGAAAT+TGG + chr2_1:2253310-2253329 Msa0187490:CDS 30.0%
TTCCAACAATCTGATTTAAG+TGG - chr2_1:2253359-2253378 None:intergenic 30.0%
ACTTAAATCAGATTGTTGGA+AGG + chr2_1:2253358-2253377 Msa0187490:CDS 30.0%
!! TGTTTTACTTTAAGGAGATG+GGG + chr2_1:2253432-2253451 Msa0187490:intron 30.0%
TACTGTAAGACCATTAAGTA+AGG + chr2_1:2253506-2253525 Msa0187490:intron 30.0%
GTCAATGAATCCTTACTTAA+TGG - chr2_1:2253519-2253538 None:intergenic 30.0%
!! TTCATTGACTTAATAATGGG+AGG + chr2_1:2253530-2253549 Msa0187490:intron 30.0%
GATGTATGTCAAACCTATAA+GGG - chr2_1:2253574-2253593 None:intergenic 30.0%
AGATGTATGTCAAACCTATA+AGG - chr2_1:2253575-2253594 None:intergenic 30.0%
ACATACATCTACTTGTTTGA+TGG + chr2_1:2253585-2253604 Msa0187490:intron 30.0%
!! CTTGTTTGATGGTTTGATTT+TGG + chr2_1:2253596-2253615 Msa0187490:intron 30.0%
!!! TGGTTTGATTTTGGTTCTTT+AGG + chr2_1:2253605-2253624 Msa0187490:intron 30.0%
!!! GGTTTGATTTTGGTTCTTTA+GGG + chr2_1:2253606-2253625 Msa0187490:intron 30.0%
!!! GTTTGATTTTGGTTCTTTAG+GGG + chr2_1:2253607-2253626 Msa0187490:intron 30.0%
GACATATATATGGTACATGT+GGG - chr2_1:2253670-2253689 None:intergenic 30.0%
TGACATATATATGGTACATG+TGG - chr2_1:2253671-2253690 None:intergenic 30.0%
AATTCTCTTGAGAAATTCAG+TGG + chr2_1:2254146-2254165 Msa0187490:intron 30.0%
! TTGAACCATTATTTTCACTC+GGG - chr2_1:2254311-2254330 None:intergenic 30.0%
CATGCCACATTCATTTATTA+TGG + chr2_1:2254387-2254406 Msa0187490:intron 30.0%
CCAACCATAATAAATGAATG+TGG - chr2_1:2254394-2254413 None:intergenic 30.0%
CCACATTCATTTATTATGGT+TGG + chr2_1:2254391-2254410 Msa0187490:intron 30.0%
CTCCAGTATAAAAGATATAC+CGG + chr2_1:2254969-2254988 Msa0187490:CDS 30.0%
CATGTAAATCACAAGTGAAA+TGG + chr2_1:2255115-2255134 Msa0187490:three_prime_UTR 30.0%
TGTAAATCACAAGTGAAATG+GGG + chr2_1:2255117-2255136 Msa0187490:three_prime_UTR 30.0%
! TACACTTTTCGTGCTTCATA+AGG - chr2_1:2250085-2250104 None:intergenic 35.0%
GAATTTCGGTTTATTCGGTT+TGG + chr2_1:2250236-2250255 Msa0187490:intron 35.0%
TTTCAGTTGAGAGGTGAAAA+TGG + chr2_1:2250259-2250278 Msa0187490:intron 35.0%
TTCAGTTGAGAGGTGAAAAT+GGG + chr2_1:2250260-2250279 Msa0187490:intron 35.0%
!! TGTTGATTTGAGTAACCCTA+TGG + chr2_1:2250433-2250452 Msa0187490:intron 35.0%
ATTTGAGTAACCCTATGGTT+TGG + chr2_1:2250438-2250457 Msa0187490:intron 35.0%
GGAGTGATGAATGAAAAGAA+TGG + chr2_1:2250533-2250552 Msa0187490:intron 35.0%
GATGATGTTCTTGAACTTGA+TGG + chr2_1:2250578-2250597 Msa0187490:intron 35.0%
! GTTCTTGAACTTGATGGTTA+TGG + chr2_1:2250584-2250603 Msa0187490:intron 35.0%
AGGTATGTTTACGATTGAGT+TGG + chr2_1:2251007-2251026 Msa0187490:intron 35.0%
TAGTTCATACGTTCTATGCT+TGG + chr2_1:2251126-2251145 Msa0187490:intron 35.0%
CGCTCCATAACTATTACTAA+CGG - chr2_1:2251170-2251189 None:intergenic 35.0%
CGTAAGACTTCAGATTCATA+GGG - chr2_1:2251257-2251276 None:intergenic 35.0%
ACGTAAGACTTCAGATTCAT+AGG - chr2_1:2251258-2251277 None:intergenic 35.0%
GTATTAGTGGAGTGAATTGA+TGG + chr2_1:2251346-2251365 Msa0187490:intron 35.0%
TTAATGAGGTCACAATCACA+AGG + chr2_1:2251398-2251417 Msa0187490:intron 35.0%
!! TGCAGCAATACGTATTGATT+GGG - chr2_1:2251564-2251583 None:intergenic 35.0%
! ATGCAGCAATACGTATTGAT+TGG - chr2_1:2251565-2251584 None:intergenic 35.0%
! ATGTAGCTTGTGAAAAATCC+GGG + chr2_1:2251818-2251837 Msa0187490:intron 35.0%
AGAGATATATACGTAAGACC+CGG - chr2_1:2251839-2251858 None:intergenic 35.0%
! TAGAACAATGTTTGCTGCAA+AGG - chr2_1:2251960-2251979 None:intergenic 35.0%
TTTGCAGCAAACATTGTTCT+AGG + chr2_1:2251959-2251978 Msa0187490:intron 35.0%
TTGCAGCAAACATTGTTCTA+GGG + chr2_1:2251960-2251979 Msa0187490:intron 35.0%
! TGTGATGGAGTTCAATTCAA+AGG - chr2_1:2252223-2252242 None:intergenic 35.0%
TTTGAAAATGATATGCTGCC+AGG + chr2_1:2252269-2252288 Msa0187490:intron 35.0%
TTGAAAATGATATGCTGCCA+GGG + chr2_1:2252270-2252289 Msa0187490:intron 35.0%
ATCACAAATCAGAATATCCC+TGG - chr2_1:2252290-2252309 None:intergenic 35.0%
! TACCTCACTGAATTGTGTTT+TGG + chr2_1:2252381-2252400 Msa0187490:intron 35.0%
TTCCAAAACACAATTCAGTG+AGG - chr2_1:2252386-2252405 None:intergenic 35.0%
!! TCACTGAATTGTGTTTTGGA+AGG + chr2_1:2252385-2252404 Msa0187490:intron 35.0%
! AACTTCTGTAGTCTCTTTTG+TGG + chr2_1:2252687-2252706 Msa0187490:intron 35.0%
TCTCAATAATCTCCTACATG+TGG + chr2_1:2252732-2252751 Msa0187490:intron 35.0%
!!! TCTGTTTTAGAACCGTCAAA+GGG - chr2_1:2252835-2252854 None:intergenic 35.0%
!!! ATCTGTTTTAGAACCGTCAA+AGG - chr2_1:2252836-2252855 None:intergenic 35.0%
ATATCTGAATTGTGGGTATG+GGG + chr2_1:2253064-2253083 Msa0187490:intron 35.0%
ATAAATGGAATGTCCTTCCA+TGG + chr2_1:2253097-2253116 Msa0187490:intron 35.0%
CCTTTAAATTCATCCATGGA+AGG - chr2_1:2253113-2253132 None:intergenic 35.0%
CCTTCCATGGATGAATTTAA+AGG + chr2_1:2253110-2253129 Msa0187490:intron 35.0%
GTCACCTTTAAATTCATCCA+TGG - chr2_1:2253117-2253136 None:intergenic 35.0%
AGATGCTCAAAAGCAAGATA+TGG - chr2_1:2253188-2253207 None:intergenic 35.0%
CAACAATCTGATTTAAGTGG+AGG - chr2_1:2253356-2253375 None:intergenic 35.0%
CTCCACTTAAATCAGATTGT+TGG + chr2_1:2253354-2253373 Msa0187490:CDS 35.0%
ATCAGATTGTTGGAAGGAAA+TGG + chr2_1:2253364-2253383 Msa0187490:CDS 35.0%
TCAGATTGTTGGAAGGAAAT+GGG + chr2_1:2253365-2253384 Msa0187490:CDS 35.0%
CACACCTAAAATCTGTTGAT+GGG - chr2_1:2253406-2253425 None:intergenic 35.0%
ACACACCTAAAATCTGTTGA+TGG - chr2_1:2253407-2253426 None:intergenic 35.0%
CAAAATAGTCTGACCCTTAT+AGG + chr2_1:2253558-2253577 Msa0187490:intron 35.0%
!!! TCCTTCTTGAGCTAGTTTTT+GGG + chr2_1:2253725-2253744 Msa0187490:intron 35.0%
ATACGGTAGAAGAAACTTAC+TGG - chr2_1:2253926-2253945 None:intergenic 35.0%
CGATTATTGCACAAACAAGA+TGG + chr2_1:2254029-2254048 Msa0187490:CDS 35.0%
TAATGCCCGAGTGAAAATAA+TGG + chr2_1:2254303-2254322 Msa0187490:intron 35.0%
AGGGAACTGTATAGATAGTT+TGG + chr2_1:2254454-2254473 Msa0187490:intron 35.0%
GGGAACTGTATAGATAGTTT+GGG + chr2_1:2254455-2254474 Msa0187490:intron 35.0%
! CTAGTTAGATAAGGTTTGGT+TGG - chr2_1:2254513-2254532 None:intergenic 35.0%
CAACCAAACCTTATCTAACT+AGG + chr2_1:2254511-2254530 Msa0187490:intron 35.0%
TTGCATTGCCTTTCAAATGA+TGG + chr2_1:2254745-2254764 Msa0187490:CDS 35.0%
! CGGTATATCTTTTATACTGG+AGG - chr2_1:2254971-2254990 None:intergenic 35.0%
! AGCCGGTATATCTTTTATAC+TGG - chr2_1:2254974-2254993 None:intergenic 35.0%
GTAAATCACAAGTGAAATGG+GGG + chr2_1:2255118-2255137 Msa0187490:three_prime_UTR 35.0%
ACGAGTGAAACGAATCTCTT+TGG - chr2_1:2250173-2250192 None:intergenic 40.0%
CGTTTCACTCGTTGAAATTC+AGG + chr2_1:2250181-2250200 Msa0187490:five_prime_UTR 40.0%
TCAGTTGAGAGGTGAAAATG+GGG + chr2_1:2250261-2250280 Msa0187490:intron 40.0%
CAGGAACATTTGGATACTTC+TGG + chr2_1:2250728-2250747 Msa0187490:CDS 40.0%
TTCATTGAATGAACCGTTGC+TGG + chr2_1:2250757-2250776 Msa0187490:CDS 40.0%
TCATTGAATGAACCGTTGCT+GGG + chr2_1:2250758-2250777 Msa0187490:CDS 40.0%
! GAAAGAAGGCGCAAATTCAT+TGG + chr2_1:2250940-2250959 Msa0187490:CDS 40.0%
!! CGTTCTATGCTTGGTTTTTG+TGG + chr2_1:2251135-2251154 Msa0187490:intron 40.0%
AGTGGCAAATCCATTGGAAT+AGG - chr2_1:2251201-2251220 None:intergenic 40.0%
CTGAAGTCTTACGTTTAGAG+TGG + chr2_1:2251264-2251283 Msa0187490:intron 40.0%
! GTATGATCAAGCACGTCTTT+TGG + chr2_1:2251314-2251333 Msa0187490:intron 40.0%
TTAGTGGAGTGAATTGATGG+AGG + chr2_1:2251349-2251368 Msa0187490:intron 40.0%
! TGCAAATGGCATGCTTTTAG+TGG + chr2_1:2251899-2251918 Msa0187490:intron 40.0%
! CTTTTATCGCATTCTACTGC+CGG + chr2_1:2252004-2252023 Msa0187490:CDS 40.0%
TCTCTATACATACCTGCACA+GGG - chr2_1:2252072-2252091 None:intergenic 40.0%
ATCTCTATACATACCTGCAC+AGG - chr2_1:2252073-2252092 None:intergenic 40.0%
ACAAAGGATGGTTGAGTTAC+GGG - chr2_1:2252247-2252266 None:intergenic 40.0%
GACAAAGGATGGTTGAGTTA+CGG - chr2_1:2252248-2252267 None:intergenic 40.0%
!! GTGGGTAACGGATATTTCTT+TGG + chr2_1:2252413-2252432 Msa0187490:intron 40.0%
AGACTACAGAAGTTCAGCAA+AGG - chr2_1:2252681-2252700 None:intergenic 40.0%
! TGTAGTCTCTTTTGTGGAGT+TGG + chr2_1:2252693-2252712 Msa0187490:intron 40.0%
AGATTGAACAGGCAGAATAC+AGG - chr2_1:2252931-2252950 None:intergenic 40.0%
AAATGACAGCGAGATTGAAC+AGG - chr2_1:2252942-2252961 None:intergenic 40.0%
ATTTAAGTGGAGGAAGCTCT+CGG - chr2_1:2253346-2253365 None:intergenic 40.0%
ATTGTTGGAAGGAAATGGGA+TGG + chr2_1:2253369-2253388 Msa0187490:CDS 40.0%
! CAGACCCATCAACAGATTTT+AGG + chr2_1:2253399-2253418 Msa0187490:CDS 40.0%
! TTTACTTTAAGGAGATGGGG+AGG + chr2_1:2253435-2253454 Msa0187490:intron 40.0%
! TTACTTTAAGGAGATGGGGA+GGG + chr2_1:2253436-2253455 Msa0187490:intron 40.0%
!!! GTCCTTCTTGAGCTAGTTTT+TGG + chr2_1:2253724-2253743 Msa0187490:intron 40.0%
GAGCTCATTAGATCTAACCA+TGG + chr2_1:2253841-2253860 Msa0187490:intron 40.0%
! TAGATCTAACCATGGTTTGC+AGG + chr2_1:2253849-2253868 Msa0187490:intron 40.0%
! AGATCTAACCATGGTTTGCA+GGG + chr2_1:2253850-2253869 Msa0187490:intron 40.0%
ACTTCTGCGCAAAAAAGATG+AGG - chr2_1:2253901-2253920 None:intergenic 40.0%
TAGCCTACCACATTTCTACT+TGG + chr2_1:2253983-2254002 Msa0187490:intron 40.0%
TTGCCAAGTAGAAATGTGGT+AGG - chr2_1:2253989-2254008 None:intergenic 40.0%
TTTCTACTTGGCAATGCCAT+AGG + chr2_1:2253995-2254014 Msa0187490:intron 40.0%
AATCGCTGAAATGAGACCTA+TGG - chr2_1:2254014-2254033 None:intergenic 40.0%
GAATATCCATTTGCAGTAGC+TGG + chr2_1:2254068-2254087 Msa0187490:CDS 40.0%
TTGATTCCAGCTACTGCAAA+TGG - chr2_1:2254077-2254096 None:intergenic 40.0%
ATTTATGTTGGTGCAGATGC+TGG + chr2_1:2254103-2254122 Msa0187490:CDS 40.0%
GACCATATCTCATCCAATGT+GGG - chr2_1:2254198-2254217 None:intergenic 40.0%
AGACCATATCTCATCCAATG+TGG - chr2_1:2254199-2254218 None:intergenic 40.0%
AAAACAAGCGTACGAGATAG+AGG - chr2_1:2254249-2254268 None:intergenic 40.0%
!!! CTTGTTTTGTTACGATGAGC+TGG + chr2_1:2254261-2254280 Msa0187490:intron 40.0%
GACTCGATTGTACTTTGCAA+TGG - chr2_1:2254421-2254440 None:intergenic 40.0%
CTATCTATACAGTTCCCTTG+AGG - chr2_1:2254452-2254471 None:intergenic 40.0%
CCACCTAGTTAGATAAGGTT+TGG - chr2_1:2254517-2254536 None:intergenic 40.0%
CCAAACCTTATCTAACTAGG+TGG + chr2_1:2254514-2254533 Msa0187490:intron 40.0%
GTTCTCCACCTAGTTAGATA+AGG - chr2_1:2254522-2254541 None:intergenic 40.0%
AGAAGATGGAACAACTGCAA+CGG - chr2_1:2254663-2254682 None:intergenic 40.0%
AGTTGTTCCATCTTCTTCGT+CGG + chr2_1:2254667-2254686 Msa0187490:intron 40.0%
! CGTCGGGAATATGTTTTCTA+CGG + chr2_1:2254684-2254703 Msa0187490:CDS 40.0%
CTGAGCATCCATCATTTGAA+AGG - chr2_1:2254756-2254775 None:intergenic 40.0%
!! TTCAAATGATGGATGCTCAG+TGG + chr2_1:2254756-2254775 Msa0187490:CDS 40.0%
AGCAAAGCGTGCTACATATA+TGG + chr2_1:2254781-2254800 Msa0187490:CDS 40.0%
!! TCGGTTTGGTTTCAGTTGAG+AGG + chr2_1:2250250-2250269 Msa0187490:intron 45.0%
TTGAGGAGAAGACTCCATCA+CGG + chr2_1:2250686-2250705 Msa0187490:CDS 45.0%
TGGAAAACGGCAGGAACATT+TGG + chr2_1:2250718-2250737 Msa0187490:CDS 45.0%
TAATCATCACCTCCCAGCAA+CGG - chr2_1:2250773-2250792 None:intergenic 45.0%
GTGGGATGATGAGAGAAAGA+AGG + chr2_1:2250926-2250945 Msa0187490:CDS 45.0%
TTTCGAACCTCATTGCGCAA+TGG + chr2_1:2250973-2250992 Msa0187490:CDS 45.0%
TTCGAACCTCATTGCGCAAT+GGG + chr2_1:2250974-2250993 Msa0187490:CDS 45.0%
! TTCCAATGGATTTGCCACTC+TGG + chr2_1:2251202-2251221 Msa0187490:intron 45.0%
ATTTGCCACTCTGGCAAACA+AGG + chr2_1:2251211-2251230 Msa0187490:intron 45.0%
! ACTTTCCTTGTTTGCCAGAG+TGG - chr2_1:2251219-2251238 None:intergenic 45.0%
!!! AAGCACGTCTTTTGGAGCTT+GGG + chr2_1:2251322-2251341 Msa0187490:intron 45.0%
!! TTGGAGCTTGGGAGTATTAG+TGG + chr2_1:2251333-2251352 Msa0187490:intron 45.0%
TGGAGTGAATTGATGGAGGA+GGG + chr2_1:2251353-2251372 Msa0187490:intron 45.0%
GGAGGAGGGTGATTGAAAAT+TGG + chr2_1:2251367-2251386 Msa0187490:intron 45.0%
ATGAGGTCACAATCACAAGG+TGG + chr2_1:2251401-2251420 Msa0187490:intron 45.0%
!! GCAAACATTGTTCTAGGGTC+TGG + chr2_1:2251965-2251984 Msa0187490:intron 45.0%
CAAAGGATGGTTGAGTTACG+GGG - chr2_1:2252246-2252265 None:intergenic 45.0%
! CAGTGAGGTATTCGAGAAAC+TGG - chr2_1:2252371-2252390 None:intergenic 45.0%
!!! TGTGTTTTGGAAGGCATCAG+TGG + chr2_1:2252394-2252413 Msa0187490:intron 45.0%
!!! GTGTTTTGGAAGGCATCAGT+GGG + chr2_1:2252395-2252414 Msa0187490:intron 45.0%
! AGGACGCTCTTTTACAACTG+TGG + chr2_1:2253303-2253322 Msa0187490:intron 45.0%
! TACTTTAAGGAGATGGGGAG+GGG + chr2_1:2253437-2253456 Msa0187490:intron 45.0%
AGCTCAAGAAGGACGATGAT+TGG - chr2_1:2253718-2253737 None:intergenic 45.0%
GCCCAAAAACTAGCTCAAGA+AGG - chr2_1:2253729-2253748 None:intergenic 45.0%
! GATCTAACCATGGTTTGCAG+GGG + chr2_1:2253851-2253870 Msa0187490:intron 45.0%
GGCATTGCCAAGTAGAAATG+TGG - chr2_1:2253993-2254012 None:intergenic 45.0%
ATGGATATTCCCACTCTGCT+CGG - chr2_1:2254058-2254077 None:intergenic 45.0%
CAGATGCTGGATCTTCAATC+AGG + chr2_1:2254116-2254135 Msa0187490:CDS 45.0%
ACATGTTGAGAGTCCCACAT+TGG + chr2_1:2254182-2254201 Msa0187490:intron 45.0%
GTCCCACATTGGATGAGATA+TGG + chr2_1:2254193-2254212 Msa0187490:intron 45.0%
AAGATGGAACAACTGCAACG+GGG - chr2_1:2254661-2254680 None:intergenic 45.0%
GAAGATGGAACAACTGCAAC+GGG - chr2_1:2254662-2254681 None:intergenic 45.0%
GTTGTTCCATCTTCTTCGTC+GGG + chr2_1:2254668-2254687 Msa0187490:intron 45.0%
CATATTCCCGACGAAGAAGA+TGG - chr2_1:2254677-2254696 None:intergenic 45.0%
! ATGTTTTCTACGGCTGCTTG+AGG + chr2_1:2254694-2254713 Msa0187490:CDS 45.0%
CATCTCAACATGTTGTGAGC+CGG - chr2_1:2254991-2255010 None:intergenic 45.0%
TGAGGAGAAGACTCCATCAC+GGG + chr2_1:2250687-2250706 Msa0187490:CDS 50.0%
ACGGGGATGTCGATGGAAAA+CGG + chr2_1:2250705-2250724 Msa0187490:CDS 50.0%
TTGAATGAACCGTTGCTGGG+AGG + chr2_1:2250761-2250780 Msa0187490:CDS 50.0%
TGCCAGAGTGGCAAATCCAT+TGG - chr2_1:2251207-2251226 None:intergenic 50.0%
!!! CAAGCACGTCTTTTGGAGCT+TGG + chr2_1:2251321-2251340 Msa0187490:intron 50.0%
GTGGAGTGAATTGATGGAGG+AGG + chr2_1:2251352-2251371 Msa0187490:intron 50.0%
GGTCACAATCACAAGGTGGT+TGG + chr2_1:2251405-2251424 Msa0187490:intron 50.0%
!! TGGAAGGCATCAGTGGGTAA+CGG + chr2_1:2252401-2252420 Msa0187490:intron 50.0%
CGGCTTGAAGTTCCCTTTGA+CGG + chr2_1:2252820-2252839 Msa0187490:CDS 50.0%
TGGAAGGAAATGGGATGGCA+AGG + chr2_1:2253374-2253393 Msa0187490:CDS 50.0%
GAGGGGCCTGAATATGGATA+AGG + chr2_1:2253454-2253473 Msa0187490:intron 50.0%
AAGATGGAATCCGAGCAGAG+TGG + chr2_1:2254045-2254064 Msa0187490:CDS 50.0%
AGATGGAATCCGAGCAGAGT+GGG + chr2_1:2254046-2254065 Msa0187490:CDS 50.0%
TCGAGTCTGAGTTTGCCTCA+AGG + chr2_1:2254434-2254453 Msa0187490:intron 50.0%
CGAGTCTGAGTTTGCCTCAA+GGG + chr2_1:2254435-2254454 Msa0187490:intron 50.0%
! TTTTCTACGGCTGCTTGAGG+AGG + chr2_1:2254697-2254716 Msa0187490:CDS 50.0%
GCTGCTTGAGGAGGATGAAA+TGG + chr2_1:2254706-2254725 Msa0187490:CDS 50.0%
GAGGAGAAGACTCCATCACG+GGG + chr2_1:2250688-2250707 Msa0187490:CDS 55.0%
TTCCATCGACATCCCCGTGA+TGG - chr2_1:2250703-2250722 None:intergenic 55.0%
GGATGTCGATGGAAAACGGC+AGG + chr2_1:2250709-2250728 Msa0187490:CDS 55.0%
ACTGTGCCCATTGCGCAATG+AGG - chr2_1:2250983-2251002 None:intergenic 55.0%
TCATTGCGCAATGGGCACAG+TGG + chr2_1:2250982-2251001 Msa0187490:CDS 55.0%
!! TGCACAGGGCTAAGTGTTGG+AGG - chr2_1:2252058-2252077 None:intergenic 55.0%
TCCAACACTTAGCCCTGTGC+AGG + chr2_1:2252057-2252076 Msa0187490:CDS 55.0%
ACCTGCACAGGGCTAAGTGT+TGG - chr2_1:2252061-2252080 None:intergenic 55.0%
GGTTGAGTTACGGGGTGTGA+TGG - chr2_1:2252238-2252257 None:intergenic 55.0%
! CTAACCATGGTTTGCAGGGG+TGG + chr2_1:2253854-2253873 Msa0187490:intron 55.0%
CTCCATCACGGGGATGTCGA+TGG + chr2_1:2250698-2250717 Msa0187490:CDS 60.0%
GCGCAATGGGCACAGTGGTT+AGG + chr2_1:2250987-2251006 Msa0187490:CDS 60.0%
AGTGGAGGAAGCTCTCGGTC+AGG - chr2_1:2253341-2253360 None:intergenic 60.0%
GATGGGGAGGGGCCTGAATA+TGG + chr2_1:2253448-2253467 Msa0187490:intron 60.0%
! ACCATGGTTTGCAGGGGTGG+AGG + chr2_1:2253857-2253876 Msa0187490:intron 60.0%
! CCATGGTTTGCAGGGGTGGA+GGG + chr2_1:2253858-2253877 Msa0187490:intron 60.0%
CCCTCCACCCCTGCAAACCA+TGG - chr2_1:2253861-2253880 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 2249997 2255268 2249997 ID=Msa0187490;Name=Msa0187490
chr2_1 mRNA 2249997 2255268 2249997 ID=Msa0187490-mRNA-1;Parent=Msa0187490;Name=Msa0187490-mRNA-1;_AED=0.10;_eAED=0.10;_QI=236|1|1|1|0.88|0.8|10|257|318
chr2_1 exon 2249997 2250202 2249997 ID=Msa0187490-mRNA-1:exon:1010;Parent=Msa0187490-mRNA-1
chr2_1 exon 2250641 2250808 2250641 ID=Msa0187490-mRNA-1:exon:1011;Parent=Msa0187490-mRNA-1
chr2_1 exon 2250906 2251008 2250906 ID=Msa0187490-mRNA-1:exon:1012;Parent=Msa0187490-mRNA-1
chr2_1 exon 2251966 2252078 2251966 ID=Msa0187490-mRNA-1:exon:1013;Parent=Msa0187490-mRNA-1
chr2_1 exon 2252793 2252861 2252793 ID=Msa0187490-mRNA-1:exon:1014;Parent=Msa0187490-mRNA-1
chr2_1 exon 2253305 2253420 2253305 ID=Msa0187490-mRNA-1:exon:1015;Parent=Msa0187490-mRNA-1
chr2_1 exon 2253871 2253925 2253871 ID=Msa0187490-mRNA-1:exon:1016;Parent=Msa0187490-mRNA-1
chr2_1 exon 2254017 2254137 2254017 ID=Msa0187490-mRNA-1:exon:1017;Parent=Msa0187490-mRNA-1
chr2_1 exon 2254669 2254811 2254669 ID=Msa0187490-mRNA-1:exon:1018;Parent=Msa0187490-mRNA-1
chr2_1 exon 2254913 2255268 2254913 ID=Msa0187490-mRNA-1:exon:1019;Parent=Msa0187490-mRNA-1
chr2_1 five_prime_UTR 2249997 2250202 2249997 ID=Msa0187490-mRNA-1:five_prime_utr;Parent=Msa0187490-mRNA-1
chr2_1 five_prime_UTR 2250641 2250670 2250641 ID=Msa0187490-mRNA-1:five_prime_utr;Parent=Msa0187490-mRNA-1
chr2_1 CDS 2250671 2250808 2250671 ID=Msa0187490-mRNA-1:cds;Parent=Msa0187490-mRNA-1
chr2_1 CDS 2250906 2251008 2250906 ID=Msa0187490-mRNA-1:cds;Parent=Msa0187490-mRNA-1
chr2_1 CDS 2251966 2252078 2251966 ID=Msa0187490-mRNA-1:cds;Parent=Msa0187490-mRNA-1
chr2_1 CDS 2252793 2252861 2252793 ID=Msa0187490-mRNA-1:cds;Parent=Msa0187490-mRNA-1
chr2_1 CDS 2253305 2253420 2253305 ID=Msa0187490-mRNA-1:cds;Parent=Msa0187490-mRNA-1
chr2_1 CDS 2253871 2253925 2253871 ID=Msa0187490-mRNA-1:cds;Parent=Msa0187490-mRNA-1
chr2_1 CDS 2254017 2254137 2254017 ID=Msa0187490-mRNA-1:cds;Parent=Msa0187490-mRNA-1
chr2_1 CDS 2254669 2254811 2254669 ID=Msa0187490-mRNA-1:cds;Parent=Msa0187490-mRNA-1
chr2_1 CDS 2254913 2255011 2254913 ID=Msa0187490-mRNA-1:cds;Parent=Msa0187490-mRNA-1
chr2_1 three_prime_UTR 2255012 2255268 2255012 ID=Msa0187490-mRNA-1:three_prime_utr;Parent=Msa0187490-mRNA-1
Gene Sequence

>Msa0187490

ATGTCTTCAAAAACATTGAGGAGAAGACTCCATCACGGGGATGTCGATGGAAAACGGCAGGAACATTTGGATACTTCTGGATTAGATTCATTGAATGAACCGTTGCTGGGAGGTGATGATTATATCGAGAGTAAGAAGATATGTACACTTGAAGATTTGTGGGATGATGAGAGAAAGAAGGCGCAAATTCATTGGACATTCTTATTTTCGAACCTCATTGCGCAATGGGCACAGTGGTTAGCAAACATTGTTCTAGGGTCTGGATCTCTTCTTAGTCGTCTTTTATCGCATTCTACTGCCGGTTTTTACTTGCAAAATAATAGGATGGTTCCTCCAACACTTAGCCCTGTGCAGGAAGAAAGACTAAGAAACTTAAAGCAACGGCTTGAAGTTCCCTTTGACGGTTCTAAAACAGATCACCAAGACGCTCTTTTACAACTGTGGAAATTGGCTTATCCTGACCGAGAGCTTCCTCCACTTAAATCAGATTGTTGGAAGGAAATGGGATGGCAAGGTTCAGACCCATCAACAGATTTTAGGGGTGGAGGGTTTATATCATTAGAGAACCTCATCTTTTTTGCGCAGAAGTATCCAGTCTCATTTCAGCGATTATTGCACAAACAAGATGGAATCCGAGCAGAGTGGGAATATCCATTTGCAGTAGCTGGAATCAATATCTCATTTATGTTGGTGCAGATGCTGGATCTTCAATCAGTTGTTCCATCTTCTTCGTCGGGAATATGTTTTCTACGGCTGCTTGAGGAGGATGAAATGGCATTTGATGTTCTTTTTTGCATTGCCTTTCAAATGATGGATGCTCAGTGGCTAGCAAAGCGTGCTACATATATGGAATTTAACGATGTTTTGAAGTCAACAAGAATACAATTAGAGCGCGAGCTTGCTCTTGAAGACACCTCCAGTATAAAAGATATACCGGCTCACAACATGTTGAGATGA

Protein sequence

>Msa0187490

MSSKTLRRRLHHGDVDGKRQEHLDTSGLDSLNEPLLGGDDYIESKKICTLEDLWDDERKKAQIHWTFLFSNLIAQWAQWLANIVLGSGSLLSRLLSHSTAGFYLQNNRMVPPTLSPVQEERLRNLKQRLEVPFDGSKTDHQDALLQLWKLAYPDRELPPLKSDCWKEMGWQGSDPSTDFRGGGFISLENLIFFAQKYPVSFQRLLHKQDGIRAEWEYPFAVAGINISFMLVQMLDLQSVVPSSSSGICFLRLLEEDEMAFDVLFCIAFQMMDAQWLAKRATYMEFNDVLKSTRIQLERELALEDTSSIKDIPAHNMLR*