Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0378010 | XP_003602620.1 | 99.708 | 342 | 1 | 0 | 1 | 342 | 1 | 342 | 0.0 | 687 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0378010 | sp|Q941R4|GONS1_ARATH | 78.107 | 338 | 69 | 1 | 3 | 340 | 1 | 333 | 0.0 | 518 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0378010 | G7JBL1 | 99.708 | 342 | 1 | 0 | 1 | 342 | 1 | 342 | 0.0 | 687 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0015090 | Msa0378010 | 0.823274 | 1.512656e-53 | -8.615850e-47 |
Msa0017320 | Msa0378010 | 0.834038 | 3.776236e-56 | -8.615850e-47 |
Msa0030300 | Msa0378010 | 0.800773 | 1.231567e-48 | -8.615850e-47 |
Msa0036540 | Msa0378010 | 0.811871 | 5.635865e-51 | -8.615850e-47 |
Msa0045550 | Msa0378010 | 0.803381 | 3.581847e-49 | -8.615850e-47 |
Msa0049750 | Msa0378010 | 0.822448 | 2.356092e-53 | -8.615850e-47 |
Msa0077900 | Msa0378010 | 0.801249 | 9.843711e-49 | -8.615850e-47 |
Msa0079230 | Msa0378010 | 0.800190 | 1.619114e-48 | -8.615850e-47 |
Msa0081940 | Msa0378010 | 0.804781 | 1.831735e-49 | -8.615850e-47 |
Msa0095360 | Msa0378010 | 0.800603 | 1.333963e-48 | -8.615850e-47 |
Msa0095770 | Msa0378010 | 0.802667 | 5.032080e-49 | -8.615850e-47 |
Msa0098290 | Msa0378010 | 0.801502 | 8.736003e-49 | -8.615850e-47 |
Msa0111080 | Msa0378010 | 0.812106 | 5.008660e-51 | -8.615850e-47 |
Msa0126790 | Msa0378010 | 0.807011 | 6.225416e-50 | -8.615850e-47 |
Msa0126880 | Msa0378010 | 0.812108 | 5.004553e-51 | -8.615850e-47 |
Msa0128430 | Msa0378010 | 0.806489 | 8.024204e-50 | -8.615850e-47 |
Msa0136630 | Msa0378010 | 0.810431 | 1.156737e-50 | -8.615850e-47 |
Msa0138900 | Msa0378010 | 0.800057 | 1.723030e-48 | -8.615850e-47 |
Msa0139670 | Msa0378010 | 0.815595 | 8.528268e-52 | -8.615850e-47 |
Msa0142500 | Msa0378010 | 0.821595 | 3.713876e-53 | -8.615850e-47 |
Msa0144430 | Msa0378010 | 0.812132 | 4.944778e-51 | -8.615850e-47 |
Msa0154920 | Msa0378010 | 0.817303 | 3.536293e-52 | -8.615850e-47 |
Msa0171870 | Msa0378010 | 0.804296 | 2.313002e-49 | -8.615850e-47 |
Msa0171980 | Msa0378010 | 0.841080 | 5.900503e-58 | -8.615850e-47 |
Msa0187490 | Msa0378010 | 0.805793 | 1.124448e-49 | -8.615850e-47 |
Msa0189030 | Msa0378010 | 0.812962 | 3.255998e-51 | -8.615850e-47 |
Msa0202410 | Msa0378010 | 0.811728 | 6.056357e-51 | -8.615850e-47 |
Msa0378010 | Msa0380600 | 0.804664 | 1.938193e-49 | -8.615850e-47 |
Msa0378010 | Msa0382310 | 0.802151 | 6.428808e-49 | -8.615850e-47 |
Msa0378010 | Msa0382370 | 0.805568 | 1.253922e-49 | -8.615850e-47 |
Msa0378010 | Msa0388730 | 0.809369 | 1.958176e-50 | -8.615850e-47 |
Msa0378010 | Msa0403490 | 0.818859 | 1.573445e-52 | -8.615850e-47 |
Msa0378010 | Msa0427580 | 0.873059 | 1.970721e-67 | -8.615850e-47 |
Msa0378010 | Msa0430060 | 0.800617 | 1.325314e-48 | -8.615850e-47 |
Msa0378010 | Msa0430240 | 0.804896 | 1.733789e-49 | -8.615850e-47 |
Msa0378010 | Msa0443430 | 0.800163 | 1.639296e-48 | -8.615850e-47 |
Msa0378010 | Msa0481030 | 0.828310 | 9.654943e-55 | -8.615850e-47 |
Msa0378010 | Msa0482180 | 0.811311 | 7.461002e-51 | -8.615850e-47 |
Msa0378010 | Msa0482940 | 0.809409 | 1.919572e-50 | -8.615850e-47 |
Msa0378010 | Msa0489660 | 0.800773 | 1.231421e-48 | -8.615850e-47 |
Msa0378010 | Msa0500470 | 0.810754 | 9.849404e-51 | -8.615850e-47 |
Msa0378010 | Msa0518170 | 0.875976 | 2.014128e-68 | -8.615850e-47 |
Msa0378010 | Msa0519160 | 0.801930 | 7.137263e-49 | -8.615850e-47 |
Msa0378010 | Msa0569780 | 0.815425 | 9.306947e-52 | -8.615850e-47 |
Msa0378010 | Msa0583670 | 0.805007 | 1.643415e-49 | -8.615850e-47 |
Msa0378010 | Msa0600450 | 0.820398 | 7.006747e-53 | -8.615850e-47 |
Msa0378010 | Msa0626940 | 0.805159 | 1.526808e-49 | -8.615850e-47 |
Msa0378010 | Msa0640940 | 0.822794 | 1.957207e-53 | -8.615850e-47 |
Msa0378010 | Msa0643320 | 0.835030 | 2.127029e-56 | -8.615850e-47 |
Msa0378010 | Msa0657120 | 0.817792 | 2.743314e-52 | -8.615850e-47 |
Msa0378010 | Msa0658680 | 0.804552 | 2.045170e-49 | -8.615850e-47 |
Msa0378010 | Msa0659790 | 0.822758 | 1.995637e-53 | -8.615850e-47 |
Msa0378010 | Msa0665080 | 0.816947 | 4.252726e-52 | -8.615850e-47 |
Msa0378010 | Msa0679360 | 0.830384 | 3.027544e-55 | -8.615850e-47 |
Msa0378010 | Msa0683140 | 0.822376 | 2.448314e-53 | -8.615850e-47 |
Msa0378010 | Msa0701100 | 0.805114 | 1.560278e-49 | -8.615850e-47 |
Msa0378010 | Msa0702370 | 0.807194 | 5.695191e-50 | -8.615850e-47 |
Msa0378010 | Msa0703910 | 0.826039 | 3.375836e-54 | -8.615850e-47 |
Msa0378010 | Msa0705990 | 0.800424 | 1.450736e-48 | -8.615850e-47 |
Msa0378010 | Msa0709120 | 0.812782 | 3.565640e-51 | -8.615850e-47 |
Msa0378010 | Msa0724370 | 0.818152 | 2.275241e-52 | -8.615850e-47 |
Msa0378010 | Msa0746170 | 0.805396 | 1.362040e-49 | -8.615850e-47 |
Msa0378010 | Msa0746210 | 0.810471 | 1.134109e-50 | -8.615850e-47 |
Msa0378010 | Msa0763920 | 0.812599 | 3.909301e-51 | -8.615850e-47 |
Msa0378010 | Msa0775560 | 0.830472 | 2.881346e-55 | -8.615850e-47 |
Msa0378010 | Msa0812950 | 0.823573 | 1.287740e-53 | -8.615850e-47 |
Msa0378010 | Msa0844610 | 0.836705 | 7.999515e-57 | -8.615850e-47 |
Msa0378010 | Msa0853440 | 0.830997 | 2.141878e-55 | -8.615850e-47 |
Msa0378010 | Msa0855110 | 0.802994 | 4.306473e-49 | -8.615850e-47 |
Msa0378010 | Msa0861470 | 0.802673 | 5.017048e-49 | -8.615850e-47 |
Msa0378010 | Msa0861570 | 0.806725 | 7.154982e-50 | -8.615850e-47 |
Msa0378010 | Msa0870650 | 0.811652 | 6.291149e-51 | -8.615850e-47 |
Msa0378010 | Msa0905750 | 0.807771 | 4.295904e-50 | -8.615850e-47 |
Msa0378010 | Msa0958030 | 0.815623 | 8.407945e-52 | -8.615850e-47 |
Msa0378010 | Msa0992580 | 0.817622 | 2.997602e-52 | -8.615850e-47 |
Msa0378010 | Msa1054510 | 0.840303 | 9.431178e-58 | -8.615850e-47 |
Msa0378010 | Msa1062040 | 0.803039 | 4.216976e-49 | -8.615850e-47 |
Msa0378010 | Msa1063420 | 0.801693 | 7.983215e-49 | -8.615850e-47 |
Msa0378010 | Msa1071320 | 0.810239 | 1.272514e-50 | -8.615850e-47 |
Msa0378010 | Msa1093100 | 0.820005 | 8.620612e-53 | -8.615850e-47 |
Msa0378010 | Msa1107200 | 0.821904 | 3.151029e-53 | -8.615850e-47 |
Msa0378010 | Msa1126240 | 0.805419 | 1.347218e-49 | -8.615850e-47 |
Msa0378010 | Msa1158390 | 0.801737 | 7.816873e-49 | -8.615850e-47 |
Msa0378010 | Msa1164020 | 0.802282 | 6.041925e-49 | -8.615850e-47 |
Msa0378010 | Msa1176200 | 0.808006 | 3.828774e-50 | -8.615850e-47 |
Msa0378010 | Msa1176360 | 0.801551 | 8.534786e-49 | -8.615850e-47 |
Msa0378010 | Msa1177780 | 0.801794 | 7.609870e-49 | -8.615850e-47 |
Msa0378010 | Msa1183140 | 0.811380 | 7.207143e-51 | -8.615850e-47 |
Msa0378010 | Msa1187590 | 0.801455 | 8.930522e-49 | -8.615850e-47 |
Msa0378010 | Msa1197070 | 0.803407 | 3.538535e-49 | -8.615850e-47 |
Msa0378010 | Msa1205590 | 0.805753 | 1.146583e-49 | -8.615850e-47 |
Msa0378010 | Msa1206650 | 0.800454 | 1.430323e-48 | -8.615850e-47 |
Msa0378010 | Msa1208380 | 0.807782 | 4.272820e-50 | -8.615850e-47 |
Msa0378010 | Msa1209190 | 0.817548 | 3.115476e-52 | -8.615850e-47 |
Msa0378010 | Msa1209860 | 0.811413 | 7.090069e-51 | -8.615850e-47 |
Msa0378010 | Msa1234620 | 0.816178 | 6.320766e-52 | -8.615850e-47 |
Msa0378010 | Msa1250110 | 0.809719 | 1.646239e-50 | -8.615850e-47 |
Msa0378010 | Msa1250730 | 0.802842 | 4.630777e-49 | -8.615850e-47 |
Msa0378010 | Msa1258370 | 0.804104 | 2.535270e-49 | -8.615850e-47 |
Msa0378010 | Msa1260680 | 0.810898 | 9.169379e-51 | -8.615850e-47 |
Msa0378010 | Msa1270660 | 0.823718 | 1.190956e-53 | -8.615850e-47 |
Msa0378010 | Msa1270730 | 0.807869 | 4.093036e-50 | -8.615850e-47 |
Msa0378010 | Msa1276970 | 0.803934 | 2.750291e-49 | -8.615850e-47 |
Msa0378010 | Msa1297530 | 0.806425 | 8.276930e-50 | -8.615850e-47 |
Msa0378010 | Msa1307180 | 0.824781 | 6.703054e-54 | -8.615850e-47 |
Msa0378010 | Msa1316360 | 0.835982 | 1.221757e-56 | -8.615850e-47 |
Msa0378010 | Msa1332050 | 0.812712 | 3.693025e-51 | -8.615850e-47 |
Msa0378010 | Msa1335230 | 0.801304 | 9.590533e-49 | -8.615850e-47 |
Msa0378010 | Msa1355890 | 0.802280 | 6.046247e-49 | -8.615850e-47 |
Msa0378010 | Msa1370590 | 0.812676 | 3.760910e-51 | -8.615850e-47 |
Msa0378010 | Msa1382020 | 0.817217 | 3.697876e-52 | -8.615850e-47 |
Msa0378010 | Msa1384100 | 0.808724 | 2.691105e-50 | -8.615850e-47 |
Msa0378010 | Msa1395730 | 0.814241 | 1.702697e-51 | -8.615850e-47 |
Msa0378010 | Msa1421210 | 0.829283 | 5.612043e-55 | -8.615850e-47 |
Msa0378010 | Msa1422810 | 0.832338 | 1.000600e-55 | -8.615850e-47 |
Msa0378010 | Msa1423540 | 0.847152 | 1.385217e-59 | -8.615850e-47 |
Msa0378010 | Msa1430130 | 0.814807 | 1.276536e-51 | -8.615850e-47 |
Msa0378010 | Msa1438840 | 0.849160 | 3.864783e-60 | -8.615850e-47 |
Msa0378010 | Msa1440790 | 0.805222 | 1.481595e-49 | -8.615850e-47 |
Msa0378010 | Msa1442790 | 0.809390 | 1.937573e-50 | -8.615850e-47 |
Msa0378010 | Msa1444120 | 0.811360 | 7.280071e-51 | -8.615850e-47 |
Msa0378010 | Msa1447890 | 0.818571 | 1.828243e-52 | -8.615850e-47 |
Msa0378010 | Msa1460750 | 0.814636 | 1.392938e-51 | -8.615850e-47 |
Msa0378010 | Msa1462470 | 0.812640 | 3.829375e-51 | -8.615850e-47 |
Msa0244970 | Msa0378010 | 0.803516 | 3.358747e-49 | -8.615850e-47 |
Msa0262370 | Msa0378010 | 0.808995 | 2.355116e-50 | -8.615850e-47 |
Msa0283420 | Msa0378010 | 0.809773 | 1.603297e-50 | -8.615850e-47 |
Msa0296920 | Msa0378010 | 0.813736 | 2.200489e-51 | -8.615850e-47 |
Msa0296980 | Msa0378010 | -0.800671 | 1.292032e-48 | -8.615850e-47 |
Msa0300150 | Msa0378010 | 0.809233 | 2.094217e-50 | -8.615850e-47 |
Msa0304840 | Msa0378010 | 0.808138 | 3.588231e-50 | -8.615850e-47 |
Msa0309270 | Msa0378010 | 0.815057 | 1.123341e-51 | -8.615850e-47 |
Msa0321690 | Msa0378010 | 0.830540 | 2.772646e-55 | -8.615850e-47 |
Msa0341230 | Msa0378010 | 0.805153 | 1.531449e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0378010 | MtrunA17_Chr3g0130221 | 99.708 | 342 | 1 | 0 | 1 | 342 | 1 | 342 | 0.0 | 687 |
Msa0378010 | MtrunA17_Chr3g0104471 | 62.048 | 332 | 114 | 2 | 17 | 336 | 67 | 398 | 2.53e-148 | 423 |
Msa0378010 | MtrunA17_Chr5g0393851 | 86.486 | 74 | 5 | 1 | 264 | 337 | 1 | 69 | 7.40e-35 | 122 |
Msa0378010 | MtrunA17_Chr3g0114581 | 23.432 | 303 | 216 | 6 | 39 | 335 | 14 | 306 | 4.95e-16 | 78.2 |
Msa0378010 | MtrunA17_Chr1g0160071 | 22.772 | 303 | 218 | 5 | 39 | 335 | 13 | 305 | 2.18e-15 | 76.3 |
Msa0378010 | MtrunA17_Chr2g0317521 | 23.647 | 351 | 238 | 5 | 3 | 337 | 1 | 337 | 1.87e-14 | 73.6 |
Msa0378010 | MtrunA17_Chr1g0149401 | 23.611 | 360 | 232 | 9 | 1 | 336 | 1 | 341 | 2.22e-12 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0378010 | AT2G13650.3 | 78.107 | 338 | 69 | 1 | 3 | 340 | 1 | 333 | 0.0 | 518 |
Msa0378010 | AT2G13650.1 | 78.107 | 338 | 69 | 1 | 3 | 340 | 1 | 333 | 0.0 | 518 |
Msa0378010 | AT2G13650.7 | 77.083 | 288 | 61 | 1 | 3 | 290 | 1 | 283 | 1.63e-153 | 432 |
Msa0378010 | AT2G13650.2 | 77.083 | 288 | 61 | 1 | 3 | 290 | 1 | 283 | 1.63e-153 | 432 |
Msa0378010 | AT2G13650.4 | 84.332 | 217 | 34 | 0 | 124 | 340 | 28 | 244 | 2.11e-126 | 362 |
Msa0378010 | AT2G13650.5 | 84.332 | 217 | 34 | 0 | 124 | 340 | 28 | 244 | 2.11e-126 | 362 |
Msa0378010 | AT2G13650.6 | 82.564 | 195 | 34 | 0 | 146 | 340 | 14 | 208 | 2.41e-111 | 323 |
Msa0378010 | AT1G07290.1 | 53.177 | 299 | 113 | 3 | 41 | 336 | 79 | 353 | 1.22e-100 | 301 |
Msa0378010 | AT1G21870.1 | 24.653 | 288 | 197 | 7 | 39 | 318 | 14 | 289 | 1.71e-15 | 77.0 |
Msa0378010 | AT4G32272.1 | 25.217 | 345 | 226 | 8 | 10 | 339 | 17 | 344 | 4.53e-15 | 75.5 |
Msa0378010 | AT1G77610.1 | 23.958 | 288 | 199 | 8 | 39 | 318 | 8 | 283 | 6.26e-14 | 72.4 |
Msa0378010 | AT4G32272.2 | 25.070 | 359 | 236 | 9 | 2 | 339 | 13 | 359 | 9.14e-14 | 72.0 |
Msa0378010 | AT5G19980.1 | 24.916 | 297 | 206 | 6 | 45 | 334 | 19 | 305 | 2.46e-13 | 70.5 |
Find 124 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACAACAACCCTTCCATTTC+TGG | 0.079663 | 3_1:-78712013 | None:intergenic |
TGTATCTATGTTGAGCCTTC+TGG | 0.107830 | 3_1:+78712485 | Msa0378010:CDS |
GATCTGTGGTATTTGATTTC+CGG | 0.174220 | 3_1:+78716365 | Msa0378010:three_prime_UTR |
GATGAACATGATGAAGAAAA+AGG | 0.229009 | 3_1:+78711958 | Msa0378010:CDS |
GATGACCTTCAGTGGAGTTT+TGG | 0.230548 | 3_1:+78715702 | Msa0378010:CDS |
TTGAGATCTCTCCCGGATTT+TGG | 0.239239 | 3_1:-78716313 | None:intergenic |
CAACACTCTTTCTTTGCCTT+TGG | 0.245089 | 3_1:+78715371 | Msa0378010:CDS |
TGGATATTTCAACTCACTAT+TGG | 0.245357 | 3_1:-78711605 | None:intergenic |
CTTTAAAGTTCCTACTAGTT+TGG | 0.268107 | 3_1:+78716117 | Msa0378010:CDS |
TTTGCCATCTGCAGTCTTGT+AGG | 0.269187 | 3_1:+78716052 | Msa0378010:intron |
AATTCCTTATACTGCTCTTC+AGG | 0.279874 | 3_1:-78716337 | None:intergenic |
AAGAAGAAGCACATGAGTTT+TGG | 0.282212 | 3_1:+78711544 | Msa0378010:five_prime_UTR |
CATAATCAAGCCTTATTATC+TGG | 0.283461 | 3_1:+78712042 | Msa0378010:CDS |
ATCTGTGGTATTTGATTTCC+GGG | 0.298914 | 3_1:+78716366 | Msa0378010:three_prime_UTR |
TTCTGAGATTACCTAGCTTT+TGG | 0.301861 | 3_1:+78715674 | Msa0378010:CDS |
CAGATCATTTCAGCAATAAC+TGG | 0.302251 | 3_1:+78714968 | Msa0378010:intron |
CTGTTCGTTTGGATCTAATT+CGG | 0.307824 | 3_1:+78716525 | Msa0378010:three_prime_UTR |
ATAAGCAAGTCCAGATAATA+AGG | 0.308574 | 3_1:-78712052 | None:intergenic |
GTATCTATGTTGAGCCTTCT+GGG | 0.310178 | 3_1:+78712486 | Msa0378010:CDS |
AACACTCTTTCTTTGCCTTT+GGG | 0.312536 | 3_1:+78715372 | Msa0378010:CDS |
AATGCAAATTGCAGGGCTTT+TGG | 0.315045 | 3_1:+78716269 | Msa0378010:intron |
GTTGATTAAAGTCTGGTTTC+CGG | 0.328959 | 3_1:+78712539 | Msa0378010:CDS |
CCGGTCAATGTTATATTTGT+TGG | 0.334498 | 3_1:+78712558 | Msa0378010:CDS |
ATGTGGTTTCTTCATCAAAC+AGG | 0.337762 | 3_1:+78715748 | Msa0378010:CDS |
GCAAAGCAATATACTAAATC+TGG | 0.337794 | 3_1:+78715315 | Msa0378010:CDS |
ATTAAACTCATAATCCTTCA+TGG | 0.340340 | 3_1:+78711740 | Msa0378010:five_prime_UTR |
GGATATTTCAACTCACTATT+GGG | 0.344944 | 3_1:-78711604 | None:intergenic |
AAACAGGGGCTACAACTTAC+AGG | 0.345308 | 3_1:+78715764 | Msa0378010:CDS |
AATATCCTTGATGGTGTATC+AGG | 0.361970 | 3_1:+78712143 | Msa0378010:CDS |
AGCACCACGAAGGCAGAGTC+TGG | 0.363622 | 3_1:+78714380 | Msa0378010:CDS |
ATGAGTTTAATAAAGAGAAT+TGG | 0.369852 | 3_1:-78711728 | None:intergenic |
CAATCCTGAAGAGCAGTATA+AGG | 0.371628 | 3_1:+78716333 | Msa0378010:exon |
TTAATCAACCTCCATGTTAG+TGG | 0.382334 | 3_1:-78712525 | None:intergenic |
TGTTCGTTTGGATCTAATTC+GGG | 0.395941 | 3_1:+78716526 | Msa0378010:three_prime_UTR |
CAGCCCAGACTCTGCCTTCG+TGG | 0.401927 | 3_1:-78714384 | None:intergenic |
GTGGATGCAGAATTTCATTT+CGG | 0.402301 | 3_1:+78712455 | Msa0378010:intron |
GCTTATTGTCTTTCCTCTTG+TGG | 0.404397 | 3_1:+78712069 | Msa0378010:CDS |
CGAATTAGATCCAAACGAAC+AGG | 0.408996 | 3_1:-78716524 | None:intergenic |
CTGGGCTGCTCTATTTCTAA+TGG | 0.414829 | 3_1:+78714399 | Msa0378010:CDS |
TGCTAATTACAAGCATGTTT+AGG | 0.418078 | 3_1:+78712583 | Msa0378010:CDS |
AAAGAAAGAGGTTCCAGAAA+TGG | 0.421951 | 3_1:+78712000 | Msa0378010:CDS |
ATAAAGAGAATTGGATGAAG+AGG | 0.424946 | 3_1:-78711719 | None:intergenic |
CATGAAAATGAAGTCTTCTT+CGG | 0.425537 | 3_1:+78711933 | Msa0378010:exon |
AAGATACCACTCTCAGTTGC+TGG | 0.429416 | 3_1:+78716085 | Msa0378010:CDS |
CATGGAGGTTGATTAAAGTC+TGG | 0.433566 | 3_1:+78712532 | Msa0378010:CDS |
TAATGCTGGAATATCCTTGA+TGG | 0.436279 | 3_1:+78712134 | Msa0378010:CDS |
AGAGAAATATTGAAATTTGA+GGG | 0.439146 | 3_1:-78711694 | None:intergenic |
AAGAGAAATATTGAAATTTG+AGG | 0.439743 | 3_1:-78711695 | None:intergenic |
TTCAGGATTGAGATCTCTCC+CGG | 0.444271 | 3_1:-78716320 | None:intergenic |
CGCTTTGAATCGCGGTGGCG+CGG | 0.452831 | 3_1:-78711892 | None:intergenic |
CACAAATCACACCTCTCTAA+AGG | 0.456138 | 3_1:-78716462 | None:intergenic |
ACAAATCACACCTCTCTAAA+GGG | 0.461401 | 3_1:-78716461 | None:intergenic |
CTAATTCGGGAAGAGTTGCT+TGG | 0.470494 | 3_1:+78716539 | Msa0378010:three_prime_UTR |
CCTCATTGAAAACAAGCATC+AGG | 0.478139 | 3_1:-78715401 | None:intergenic |
GCAGAGTTCTCCAAACTAGT+AGG | 0.485666 | 3_1:-78716127 | None:intergenic |
CCAACAAATATAACATTGAC+CGG | 0.496391 | 3_1:-78712558 | None:intergenic |
CCGTATCCATGACCCTTCGT+AGG | 0.502069 | 3_1:-78715293 | None:intergenic |
ACACTCAACACAGGCGGAGC+TGG | 0.504574 | 3_1:+78711853 | Msa0378010:five_prime_UTR |
TAAAGAGAATTGGATGAAGA+GGG | 0.505183 | 3_1:-78711718 | None:intergenic |
TTAAACTCATAATCCTTCAT+GGG | 0.505292 | 3_1:+78711741 | Msa0378010:five_prime_UTR |
TGAACCCAGAAAGAAACAAA+AGG | 0.507165 | 3_1:-78711661 | None:intergenic |
GAACCCAGAAAGAAACAAAA+GGG | 0.507996 | 3_1:-78711660 | None:intergenic |
GAAATACATTAATGTGGCTA+TGG | 0.516838 | 3_1:+78714294 | Msa0378010:CDS |
CCTACGAAGGGTCATGGATA+CGG | 0.527759 | 3_1:+78715293 | Msa0378010:CDS |
TGGTTAGTGATGACCTTCAG+TGG | 0.534587 | 3_1:+78715694 | Msa0378010:CDS |
GCCTTGTTTGTTTATGATCG+AGG | 0.535945 | 3_1:-78711771 | None:intergenic |
GCTGACCCTACGAAGGGTCA+TGG | 0.537855 | 3_1:+78715287 | Msa0378010:intron |
GTGAAGTTAGAAGTTCAACC+TGG | 0.538327 | 3_1:+78716389 | Msa0378010:three_prime_UTR |
CGCGCCACCGCGATTCAAAG+CGG | 0.538704 | 3_1:+78711893 | Msa0378010:five_prime_UTR |
GATTGCATTGCTAGCAATGG+AGG | 0.553491 | 3_1:+78716561 | Msa0378010:three_prime_UTR |
GTTGAAATATCCACAAAAGT+TGG | 0.555443 | 3_1:+78711615 | Msa0378010:five_prime_UTR |
AACTAAAATCATTCCACAAG+AGG | 0.562641 | 3_1:-78712082 | None:intergenic |
CGTATCCATGACCCTTCGTA+GGG | 0.564291 | 3_1:-78715292 | None:intergenic |
TTTCGCTAGAGCCAAAATCC+GGG | 0.569283 | 3_1:+78716302 | Msa0378010:CDS |
AAAGAGGTTCCAGAAATGGA+AGG | 0.572735 | 3_1:+78712004 | Msa0378010:CDS |
TGACGACACCTCAAAATCCC+AGG | 0.575984 | 3_1:-78716407 | None:intergenic |
ACACAGGCGGAGCTGGTGGT+CGG | 0.576955 | 3_1:+78711860 | Msa0378010:five_prime_UTR |
AATTGCGCCGCTTTGAATCG+CGG | 0.578945 | 3_1:-78711900 | None:intergenic |
AACTATCTCACCCTTTAGAG+AGG | 0.578986 | 3_1:+78716451 | Msa0378010:three_prime_UTR |
TAGTAGGAACTTTAAAGAGA+AGG | 0.579923 | 3_1:-78716111 | None:intergenic |
GTCATCACTAACCAAAAGCT+AGG | 0.580842 | 3_1:-78715685 | None:intergenic |
TTTCAACTGAACCACTAACA+TGG | 0.581249 | 3_1:+78712514 | Msa0378010:CDS |
TTGGATTGCATTGCTAGCAA+TGG | 0.583211 | 3_1:+78716558 | Msa0378010:three_prime_UTR |
CTCAACACAGGCGGAGCTGG+TGG | 0.585956 | 3_1:+78711856 | Msa0378010:five_prime_UTR |
TGTGGTTTCTTCATCAAACA+GGG | 0.587936 | 3_1:+78715749 | Msa0378010:CDS |
TCCTCGATCATAAACAAACA+AGG | 0.590957 | 3_1:+78711770 | Msa0378010:five_prime_UTR |
GCACCACGAAGGCAGAGTCT+GGG | 0.591892 | 3_1:+78714381 | Msa0378010:CDS |
GTTCATGATTACTTCTCTGA+GGG | 0.593247 | 3_1:+78716488 | Msa0378010:three_prime_UTR |
CGTCAAAGAGATGATTGTAT+CGG | 0.595188 | 3_1:+78716425 | Msa0378010:three_prime_UTR |
ATCATTTCAGCAATAACTGG+AGG | 0.613231 | 3_1:+78714971 | Msa0378010:CDS |
CAGTTTGAAATACATTAATG+TGG | 0.616131 | 3_1:+78714288 | Msa0378010:intron |
TGCGCCGCTTTGAATCGCGG+TGG | 0.616443 | 3_1:-78711897 | None:intergenic |
GAATTAGATCCAAACGAACA+GGG | 0.618840 | 3_1:-78716523 | None:intergenic |
AGTTCATGATTACTTCTCTG+AGG | 0.619402 | 3_1:+78716487 | Msa0378010:three_prime_UTR |
TCATTTCAGCAATAACTGGA+GGG | 0.623711 | 3_1:+78714972 | Msa0378010:CDS |
AAGCTAGGTAATCTCAGAAG+TGG | 0.624340 | 3_1:-78715670 | None:intergenic |
AGGATGCCAGCAACTGAGAG+TGG | 0.626159 | 3_1:-78716091 | None:intergenic |
TATTGCAGCTGACCCTACGA+AGG | 0.633946 | 3_1:+78715280 | Msa0378010:intron |
ATATGTTGCATCTTGAGACA+AGG | 0.635225 | 3_1:+78716713 | Msa0378010:three_prime_UTR |
TATGTTGCATCTTGAGACAA+GGG | 0.637981 | 3_1:+78716714 | Msa0378010:three_prime_UTR |
AAATTTAAATGAGTTTACGA+TGG | 0.641617 | 3_1:+78715338 | Msa0378010:CDS |
TAGACCCAAAACTCCACTGA+AGG | 0.641650 | 3_1:-78715707 | None:intergenic |
TTAATGCAACTGGCTATGTG+TGG | 0.643415 | 3_1:+78715011 | Msa0378010:CDS |
AATTAGATCCAAACGAACAG+GGG | 0.648320 | 3_1:-78716522 | None:intergenic |
AAGAGGTTCCAGAAATGGAA+GGG | 0.648638 | 3_1:+78712005 | Msa0378010:CDS |
AATTACCTGATACACCATCA+AGG | 0.651962 | 3_1:-78712148 | None:intergenic |
TGAAGTTAGAAGTTCAACCT+GGG | 0.655445 | 3_1:+78716390 | Msa0378010:three_prime_UTR |
CAGTTGAAACTAAACCCAGA+AGG | 0.657499 | 3_1:-78712500 | None:intergenic |
CAATTAGCTTCACCTCCATG+TGG | 0.658205 | 3_1:+78715731 | Msa0378010:CDS |
ATTGCAGCTGACCCTACGAA+GGG | 0.668006 | 3_1:+78715281 | Msa0378010:intron |
GAACAAGTACATTTCACCAA+CGG | 0.669904 | 3_1:-78714353 | None:intergenic |
AGCATCAGGAAAATTCCCAA+AGG | 0.675180 | 3_1:-78715387 | None:intergenic |
AACCCAGAAAGAAACAAAAG+GGG | 0.678664 | 3_1:-78711659 | None:intergenic |
ACGAATGTCATAACTGCCGT+TGG | 0.688649 | 3_1:+78714337 | Msa0378010:CDS |
TTGAACTTCTAACTTCACCC+CGG | 0.689216 | 3_1:-78716384 | None:intergenic |
CATCGTACTACACTCAACAC+AGG | 0.696953 | 3_1:+78711844 | Msa0378010:five_prime_UTR |
TGTTTGATGAAGAAACCACA+TGG | 0.697962 | 3_1:-78715746 | None:intergenic |
GTGGTTTCTTCATCAAACAG+GGG | 0.705100 | 3_1:+78715750 | Msa0378010:CDS |
CAACTGAACCACTAACATGG+AGG | 0.707867 | 3_1:+78712517 | Msa0378010:CDS |
CGTACTACACTCAACACAGG+CGG | 0.711494 | 3_1:+78711847 | Msa0378010:five_prime_UTR |
TTGTTCAGTAAGCACCACGA+AGG | 0.728813 | 3_1:+78714370 | Msa0378010:CDS |
TCTGTGGTATTTGATTTCCG+GGG | 0.753153 | 3_1:+78716367 | Msa0378010:three_prime_UTR |
AAATTGTCAAGTGATACATG+AGG | 0.779215 | 3_1:-78716650 | None:intergenic |
TTGATGAAGAAACCACATGG+AGG | 0.813768 | 3_1:-78715743 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ACTTACTATAAATATTTTTT+AGG | + | chr3_1:78714815-78714834 | Msa0378010:intron | 10.0% |
!!! | TATTTTCATATGATAATGTT+TGG | + | chr3_1:78712744-78712763 | Msa0378010:intron | 15.0% |
!! | CAAAAATATTTATGTTTAAG+AGG | - | chr3_1:78713405-78713424 | None:intergenic | 15.0% |
!!! | AAACATAAATATTTTTGTGA+CGG | + | chr3_1:78713408-78713427 | Msa0378010:intron | 15.0% |
!! | ATTATTTATGATAAGATACT+AGG | + | chr3_1:78713774-78713793 | Msa0378010:intron | 15.0% |
!! | TTATTTATGATAAGATACTA+GGG | + | chr3_1:78713775-78713794 | Msa0378010:intron | 15.0% |
!!! | CTTTTCTAATTATTGTTTAT+TGG | + | chr3_1:78713898-78713917 | Msa0378010:intron | 15.0% |
!!! | ATTTTATTTCTCTACTTTTT+AGG | + | chr3_1:78714614-78714633 | Msa0378010:intron | 15.0% |
!!! | TCCAATTTAATATATTGATT+GGG | - | chr3_1:78715881-78715900 | None:intergenic | 15.0% |
!! | AGAGAAATATTGAAATTTGA+GGG | - | chr3_1:78711697-78711716 | None:intergenic | 20.0% |
!! | AAGAGAAATATTGAAATTTG+AGG | - | chr3_1:78711698-78711717 | None:intergenic | 20.0% |
!! | ATGAGTTTAATAAAGAGAAT+TGG | - | chr3_1:78711731-78711750 | None:intergenic | 20.0% |
!!! | ATAGTTTAATGATGATGTAA+AGG | + | chr3_1:78712421-78712440 | Msa0378010:intron | 20.0% |
!!! | TTAATTTGTTTATCCAAACA+AGG | + | chr3_1:78713006-78713025 | Msa0378010:intron | 20.0% |
!! | TCTCAAACTTAATAACTAAT+AGG | - | chr3_1:78713032-78713051 | None:intergenic | 20.0% |
!!! | TTAAAATGAAAGTACAATAG+AGG | + | chr3_1:78713302-78713321 | Msa0378010:intron | 20.0% |
!!! | TAAAATGAAAGTACAATAGA+GGG | + | chr3_1:78713303-78713322 | Msa0378010:intron | 20.0% |
!! | TAAAACCAAATCCATATTAA+TGG | - | chr3_1:78713736-78713755 | None:intergenic | 20.0% |
!! | TCTAATTATTGTTTATTGGT+AGG | + | chr3_1:78713902-78713921 | Msa0378010:intron | 20.0% |
!!! | AATAATTTTCTTTTTGCTGA+TGG | + | chr3_1:78713960-78713979 | Msa0378010:intron | 20.0% |
!!! | ATAATTTTCTTTTTGCTGAT+GGG | + | chr3_1:78713961-78713980 | Msa0378010:intron | 20.0% |
!! | TTAAAAAAAGTAGTAGTATG+CGG | + | chr3_1:78714003-78714022 | Msa0378010:intron | 20.0% |
!!! | TTTTTAGGTTACATAAATGA+TGG | + | chr3_1:78714629-78714648 | Msa0378010:intron | 20.0% |
!! | ATTTAAAAACATGAGATGTT+TGG | - | chr3_1:78714916-78714935 | None:intergenic | 20.0% |
!! | AAATTTAAATGAGTTTACGA+TGG | + | chr3_1:78715338-78715357 | Msa0378010:CDS | 20.0% |
!! | TTGCAAAACGAAAAAATATA+GGG | - | chr3_1:78715610-78715629 | None:intergenic | 20.0% |
!! | TTTGCAAAACGAAAAAATAT+AGG | - | chr3_1:78715611-78715630 | None:intergenic | 20.0% |
!! | ATTAATGTATTTCAATTGAC+AGG | + | chr3_1:78715647-78715666 | Msa0378010:intron | 20.0% |
!! | AAATTAAATTTGTCGCATTT+AGG | - | chr3_1:78715847-78715866 | None:intergenic | 20.0% |
!! | TCCCAATCAATATATTAAAT+TGG | + | chr3_1:78715877-78715896 | Msa0378010:intron | 20.0% |
!! | GTCCAATTTAATATATTGAT+TGG | - | chr3_1:78715882-78715901 | None:intergenic | 20.0% |
!!! | ATAATTTTTCTGATATAGCA+CGG | - | chr3_1:78716002-78716021 | None:intergenic | 20.0% |
! | ATTAAACTCATAATCCTTCA+TGG | + | chr3_1:78711740-78711759 | Msa0378010:five_prime_UTR | 25.0% |
! | TTAAACTCATAATCCTTCAT+GGG | + | chr3_1:78711741-78711760 | Msa0378010:five_prime_UTR | 25.0% |
! | ATGAACATGATGAAGAAAAA+GGG | + | chr3_1:78711959-78711978 | Msa0378010:CDS | 25.0% |
!!! | TCTAGTTATGATTTTAATGC+TGG | + | chr3_1:78712120-78712139 | Msa0378010:CDS | 25.0% |
! | AGAAATAGCTTATACATAAG+TGG | - | chr3_1:78712262-78712281 | None:intergenic | 25.0% |
! | CATTAAACTATACAGATCTA+AGG | - | chr3_1:78712412-78712431 | None:intergenic | 25.0% |
!! | TCATATGATAATGTTTGGAT+TGG | + | chr3_1:78712749-78712768 | Msa0378010:intron | 25.0% |
!! | TAGTTATTAAGTTTGAGATG+TGG | + | chr3_1:78713034-78713053 | Msa0378010:intron | 25.0% |
!! | AAAATGAAAGTACAATAGAG+GGG | + | chr3_1:78713304-78713323 | Msa0378010:intron | 25.0% |
! | TCTTGCTTAAATTCTACATT+TGG | - | chr3_1:78713334-78713353 | None:intergenic | 25.0% |
! | TTTAAGCAAGATAGATGAAA+TGG | + | chr3_1:78713343-78713362 | Msa0378010:intron | 25.0% |
!! | TAATTTTCTATGAGATTGAG+TGG | + | chr3_1:78713448-78713467 | Msa0378010:intron | 25.0% |
!! | AAAGCATTAAAGAGAAGTTA+GGG | + | chr3_1:78713562-78713581 | Msa0378010:intron | 25.0% |
! | GTTCAATAGTTAGAGATAAA+AGG | + | chr3_1:78713679-78713698 | Msa0378010:intron | 25.0% |
! | ATTAGATTTCAAAAAACTGG+AGG | - | chr3_1:78713862-78713881 | None:intergenic | 25.0% |
! | GAGATTAGATTTCAAAAAAC+TGG | - | chr3_1:78713865-78713884 | None:intergenic | 25.0% |
!!! | GAAACACTATTCCTATTTTT+GGG | + | chr3_1:78714102-78714121 | Msa0378010:intron | 25.0% |
!!! | AAACACTATTCCTATTTTTG+GGG | + | chr3_1:78714103-78714122 | Msa0378010:intron | 25.0% |
!! | ATTTTTCCAGTCTCAATTTA+TGG | + | chr3_1:78714189-78714208 | Msa0378010:intron | 25.0% |
!! | CAGTTTGAAATACATTAATG+TGG | + | chr3_1:78714288-78714307 | Msa0378010:intron | 25.0% |
!!! | TGTTTTACCTTTTTAAGTTC+TGG | + | chr3_1:78714502-78714521 | Msa0378010:intron | 25.0% |
! | TACAATAAAGCAGTATATGT+TGG | - | chr3_1:78714565-78714584 | None:intergenic | 25.0% |
! | GAGAAATAAAATATTTCCCA+CGG | - | chr3_1:78714606-78714625 | None:intergenic | 25.0% |
! | CAACTATATCATACTCAATT+TGG | - | chr3_1:78714717-78714736 | None:intergenic | 25.0% |
GGATATTTCAACTCACTATT+GGG | - | chr3_1:78711607-78711626 | None:intergenic | 30.0% | |
TGGATATTTCAACTCACTAT+TGG | - | chr3_1:78711608-78711627 | None:intergenic | 30.0% | |
GTTGAAATATCCACAAAAGT+TGG | + | chr3_1:78711615-78711634 | Msa0378010:five_prime_UTR | 30.0% | |
!!! | AAAAAAGGTACCAACTTTTG+TGG | - | chr3_1:78711628-78711647 | None:intergenic | 30.0% |
TAAAGAGAATTGGATGAAGA+GGG | - | chr3_1:78711721-78711740 | None:intergenic | 30.0% | |
ATAAAGAGAATTGGATGAAG+AGG | - | chr3_1:78711722-78711741 | None:intergenic | 30.0% | |
CATGAAAATGAAGTCTTCTT+CGG | + | chr3_1:78711933-78711952 | Msa0378010:exon | 30.0% | |
GATGAACATGATGAAGAAAA+AGG | + | chr3_1:78711958-78711977 | Msa0378010:CDS | 30.0% | |
TTGGAAAAAAGCAAAGAAAG+AGG | + | chr3_1:78711988-78712007 | Msa0378010:CDS | 30.0% | |
!! | CATAATCAAGCCTTATTATC+TGG | + | chr3_1:78712042-78712061 | Msa0378010:CDS | 30.0% |
ATAAGCAAGTCCAGATAATA+AGG | - | chr3_1:78712055-78712074 | None:intergenic | 30.0% | |
AACTAAAATCATTCCACAAG+AGG | - | chr3_1:78712085-78712104 | None:intergenic | 30.0% | |
AGAAGAAAACACAGAAAAAG+GGG | - | chr3_1:78712187-78712206 | None:intergenic | 30.0% | |
GAGAAGAAAACACAGAAAAA+GGG | - | chr3_1:78712188-78712207 | None:intergenic | 30.0% | |
AGAGAAGAAAACACAGAAAA+AGG | - | chr3_1:78712189-78712208 | None:intergenic | 30.0% | |
! | TGTGTTTTCTTCTCTAACTT+AGG | + | chr3_1:78712194-78712213 | Msa0378010:intron | 30.0% |
AATAAGCCATTTATCCAAAC+AGG | - | chr3_1:78712221-78712240 | None:intergenic | 30.0% | |
AGCTTATACATAAGTGGTTA+TGG | - | chr3_1:78712256-78712275 | None:intergenic | 30.0% | |
TCAAATAAGTCAATCCAATC+AGG | + | chr3_1:78712385-78712404 | Msa0378010:intron | 30.0% | |
! | TGTAAAGGTTCATACTTTTG+TGG | + | chr3_1:78712436-78712455 | Msa0378010:intron | 30.0% |
CCAACAAATATAACATTGAC+CGG | - | chr3_1:78712561-78712580 | None:intergenic | 30.0% | |
TGCTAATTACAAGCATGTTT+AGG | + | chr3_1:78712583-78712602 | Msa0378010:CDS | 30.0% | |
! | GTATGAAGTCTTTAACTTTG+AGG | + | chr3_1:78712605-78712624 | Msa0378010:intron | 30.0% |
ATATGTCAATCATCTTCCAA+AGG | + | chr3_1:78712661-78712680 | Msa0378010:intron | 30.0% | |
TATGTCAATCATCTTCCAAA+GGG | + | chr3_1:78712662-78712681 | Msa0378010:intron | 30.0% | |
! | ACTGTTTTCACAAGATATCT+TGG | - | chr3_1:78712886-78712905 | None:intergenic | 30.0% |
!! | AATAACTAATAGGCCTTGTT+TGG | - | chr3_1:78713022-78713041 | None:intergenic | 30.0% |
AAATTGTCAGACTTGTAATC+TGG | - | chr3_1:78713140-78713159 | None:intergenic | 30.0% | |
AAATTGTCAGACTTGTAATC+TGG | - | chr3_1:78713140-78713159 | None:intergenic | 30.0% | |
! | AAATGAAAGTACAATAGAGG+GGG | + | chr3_1:78713305-78713324 | Msa0378010:intron | 30.0% |
!! | GAAAGCATTAAAGAGAAGTT+AGG | + | chr3_1:78713561-78713580 | Msa0378010:intron | 30.0% |
CAATAGTTAGAGATAAAAGG+AGG | + | chr3_1:78713682-78713701 | Msa0378010:intron | 30.0% | |
CCAAATCCATATTAATGGTT+TGG | - | chr3_1:78713731-78713750 | None:intergenic | 30.0% | |
CCAAACCATTAATATGGATT+TGG | + | chr3_1:78713728-78713747 | Msa0378010:intron | 30.0% | |
ATTGTTTATTGGTAGGTACT+AGG | + | chr3_1:78713909-78713928 | Msa0378010:intron | 30.0% | |
GATTCCATTTATGAGTATTC+TGG | + | chr3_1:78714038-78714057 | Msa0378010:intron | 30.0% | |
TACACCAGAATACTCATAAA+TGG | - | chr3_1:78714045-78714064 | None:intergenic | 30.0% | |
AAAATAGGAATAGTGTTTCC+TGG | - | chr3_1:78714101-78714120 | None:intergenic | 30.0% | |
! | GGAAACACTATTCCTATTTT+TGG | + | chr3_1:78714101-78714120 | Msa0378010:intron | 30.0% |
GTAAATCCATAAATTGAGAC+TGG | - | chr3_1:78714198-78714217 | None:intergenic | 30.0% | |
GAAATACATTAATGTGGCTA+TGG | + | chr3_1:78714294-78714313 | Msa0378010:CDS | 30.0% | |
ACATTATTCCACATCAAAGT+GGG | - | chr3_1:78714475-78714494 | None:intergenic | 30.0% | |
TACATTATTCCACATCAAAG+TGG | - | chr3_1:78714476-78714495 | None:intergenic | 30.0% | |
AAACAAGCCAGAACTTAAAA+AGG | - | chr3_1:78714512-78714531 | None:intergenic | 30.0% | |
! | TGCTTTATTGTAGTTTCCAA+AGG | + | chr3_1:78714573-78714592 | Msa0378010:intron | 30.0% |
!! | TGAAGTTGAATTGGTGTTTT+AGG | + | chr3_1:78714653-78714672 | Msa0378010:intron | 30.0% |
TAACAATGAAGAGTTTCAAG+TGG | - | chr3_1:78714851-78714870 | None:intergenic | 30.0% | |
GTAAAGCACATATCCAAAAT+TGG | - | chr3_1:78714894-78714913 | None:intergenic | 30.0% | |
!!! | ATTTTATTTGAAGAGCATCC+AGG | - | chr3_1:78715149-78715168 | None:intergenic | 30.0% |
TTTACACTTCTTAACAGATG+AGG | + | chr3_1:78715168-78715187 | Msa0378010:intron | 30.0% | |
TTAACAGATGAGGTTTAGTT+TGG | + | chr3_1:78715178-78715197 | Msa0378010:intron | 30.0% | |
GCAAAGCAATATACTAAATC+TGG | + | chr3_1:78715315-78715334 | Msa0378010:CDS | 30.0% | |
TGATTTCACAGACAAAATGT+GGG | - | chr3_1:78715457-78715476 | None:intergenic | 30.0% | |
ATGATTTCACAGACAAAATG+TGG | - | chr3_1:78715458-78715477 | None:intergenic | 30.0% | |
GTCTGTGAAATCATTATATG+AGG | + | chr3_1:78715464-78715483 | Msa0378010:intron | 30.0% | |
! | ACAAACAAAAAGCACATTTC+TGG | - | chr3_1:78715558-78715577 | None:intergenic | 30.0% |
TTTATCTGAAGAGCCATAAT+TGG | - | chr3_1:78715804-78715823 | None:intergenic | 30.0% | |
AATTGGACTTCGTGAATAAT+AGG | + | chr3_1:78715894-78715913 | Msa0378010:intron | 30.0% | |
ATTTAATGATGCATACACCA+CGG | + | chr3_1:78715917-78715936 | Msa0378010:intron | 30.0% | |
! | TAGTAGGAACTTTAAAGAGA+AGG | - | chr3_1:78716114-78716133 | None:intergenic | 30.0% |
!! | CTTTAAAGTTCCTACTAGTT+TGG | + | chr3_1:78716117-78716136 | Msa0378010:CDS | 30.0% |
! | AACTCTGCTAGCATTTTATT+TGG | + | chr3_1:78716142-78716161 | Msa0378010:CDS | 30.0% |
ACAAGTTTGTGTTACATTCT+TGG | + | chr3_1:78716228-78716247 | Msa0378010:intron | 30.0% | |
! | TAAGGAATTTTTCTGATCTG+TGG | + | chr3_1:78716351-78716370 | Msa0378010:three_prime_UTR | 30.0% |
AAATTGTCAAGTGATACATG+AGG | - | chr3_1:78716653-78716672 | None:intergenic | 30.0% | |
!! | AAGAAGAAGCACATGAGTTT+TGG | + | chr3_1:78711544-78711563 | Msa0378010:five_prime_UTR | 35.0% |
!! | GGGGTTCTGAATTTGAAAAA+AGG | - | chr3_1:78711643-78711662 | None:intergenic | 35.0% |
!! | AACCCCTTTTGTTTCTTTCT+GGG | + | chr3_1:78711657-78711676 | Msa0378010:five_prime_UTR | 35.0% |
AACCCAGAAAGAAACAAAAG+GGG | - | chr3_1:78711662-78711681 | None:intergenic | 35.0% | |
GAACCCAGAAAGAAACAAAA+GGG | - | chr3_1:78711663-78711682 | None:intergenic | 35.0% | |
TGAACCCAGAAAGAAACAAA+AGG | - | chr3_1:78711664-78711683 | None:intergenic | 35.0% | |
TCCTCGATCATAAACAAACA+AGG | + | chr3_1:78711770-78711789 | Msa0378010:five_prime_UTR | 35.0% | |
TGAAGAAAAAGGGAAGTTGT+TGG | + | chr3_1:78711969-78711988 | Msa0378010:CDS | 35.0% | |
AAAGAAAGAGGTTCCAGAAA+TGG | + | chr3_1:78712000-78712019 | Msa0378010:CDS | 35.0% | |
TAATGCTGGAATATCCTTGA+TGG | + | chr3_1:78712134-78712153 | Msa0378010:CDS | 35.0% | |
!! | AATATCCTTGATGGTGTATC+AGG | + | chr3_1:78712143-78712162 | Msa0378010:CDS | 35.0% |
AATTACCTGATACACCATCA+AGG | - | chr3_1:78712151-78712170 | None:intergenic | 35.0% | |
TTAGGTCCTGTTTGGATAAA+TGG | + | chr3_1:78712212-78712231 | Msa0378010:intron | 35.0% | |
GTGGATGCAGAATTTCATTT+CGG | + | chr3_1:78712455-78712474 | Msa0378010:intron | 35.0% | |
TTTCAACTGAACCACTAACA+TGG | + | chr3_1:78712514-78712533 | Msa0378010:CDS | 35.0% | |
TTAATCAACCTCCATGTTAG+TGG | - | chr3_1:78712528-78712547 | None:intergenic | 35.0% | |
! | GTTGATTAAAGTCTGGTTTC+CGG | + | chr3_1:78712539-78712558 | Msa0378010:CDS | 35.0% |
CCGGTCAATGTTATATTTGT+TGG | + | chr3_1:78712558-78712577 | Msa0378010:CDS | 35.0% | |
ATGTCAATCATCTTCCAAAG+GGG | + | chr3_1:78712663-78712682 | Msa0378010:intron | 35.0% | |
ACATGTTCATAAGCTGTGTT+TGG | + | chr3_1:78712842-78712861 | Msa0378010:intron | 35.0% | |
GTGGAGATAACACACAATTT+CGG | + | chr3_1:78713053-78713072 | Msa0378010:intron | 35.0% | |
ATAACACACAATTTCGGAAG+TGG | + | chr3_1:78713059-78713078 | Msa0378010:intron | 35.0% | |
! | TGATGTATTTTGTGACAGAG+AGG | + | chr3_1:78713377-78713396 | Msa0378010:intron | 35.0% |
! | AGAGTATTACAGTAGAAGAG+TGG | + | chr3_1:78713510-78713529 | Msa0378010:intron | 35.0% |
GAGTATTACAGTAGAAGAGT+GGG | + | chr3_1:78713511-78713530 | Msa0378010:intron | 35.0% | |
AATGATAAGAGTCTCAGCTT+CGG | + | chr3_1:78713590-78713609 | Msa0378010:intron | 35.0% | |
TTTGATTAATGTCCCCATCA+TGG | + | chr3_1:78713803-78713822 | Msa0378010:intron | 35.0% | |
GAACAAGTACATTTCACCAA+CGG | - | chr3_1:78714356-78714375 | None:intergenic | 35.0% | |
ATTATTCCACATCAAAGTGG+GGG | - | chr3_1:78714473-78714492 | None:intergenic | 35.0% | |
CATTATTCCACATCAAAGTG+GGG | - | chr3_1:78714474-78714493 | None:intergenic | 35.0% | |
AATGATGGCTGAAGTTGAAT+TGG | + | chr3_1:78714644-78714663 | Msa0378010:intron | 35.0% | |
ATATAGTTGCGAGACAGTTA+CGG | + | chr3_1:78714728-78714747 | Msa0378010:intron | 35.0% | |
TTGATGTTTGGGAATACTCA+GGG | + | chr3_1:78714751-78714770 | Msa0378010:intron | 35.0% | |
! | ACATATCCAAAATTGGTGCT+TGG | - | chr3_1:78714887-78714906 | None:intergenic | 35.0% |
GAAATGATCTGCAAGTGAAA+GGG | - | chr3_1:78714959-78714978 | None:intergenic | 35.0% | |
TGAAATGATCTGCAAGTGAA+AGG | - | chr3_1:78714960-78714979 | None:intergenic | 35.0% | |
CAGATCATTTCAGCAATAAC+TGG | + | chr3_1:78714968-78714987 | Msa0378010:intron | 35.0% | |
ATCATTTCAGCAATAACTGG+AGG | + | chr3_1:78714971-78714990 | Msa0378010:CDS | 35.0% | |
TCATTTCAGCAATAACTGGA+GGG | + | chr3_1:78714972-78714991 | Msa0378010:CDS | 35.0% | |
! | GATCTCTCTTTTAATGCAAC+TGG | + | chr3_1:78715001-78715020 | Msa0378010:CDS | 35.0% |
AACACTCTTTCTTTGCCTTT+GGG | + | chr3_1:78715372-78715391 | Msa0378010:CDS | 35.0% | |
CACGTAGTTAAAGATGACAT+AGG | - | chr3_1:78715498-78715517 | None:intergenic | 35.0% | |
!!! | TTCTGAGATTACCTAGCTTT+TGG | + | chr3_1:78715674-78715693 | Msa0378010:CDS | 35.0% |
TGTTTGATGAAGAAACCACA+TGG | - | chr3_1:78715749-78715768 | None:intergenic | 35.0% | |
ATGTGGTTTCTTCATCAAAC+AGG | + | chr3_1:78715748-78715767 | Msa0378010:CDS | 35.0% | |
TGTGGTTTCTTCATCAAACA+GGG | + | chr3_1:78715749-78715768 | Msa0378010:CDS | 35.0% | |
GTGGTCAGAAATTCCAATTA+TGG | + | chr3_1:78715788-78715807 | Msa0378010:intron | 35.0% | |
AAGGTAGAAATGCAAATTGC+AGG | + | chr3_1:78716261-78716280 | Msa0378010:intron | 35.0% | |
AGGTAGAAATGCAAATTGCA+GGG | + | chr3_1:78716262-78716281 | Msa0378010:intron | 35.0% | |
AATTCCTTATACTGCTCTTC+AGG | - | chr3_1:78716340-78716359 | None:intergenic | 35.0% | |
! | GATCTGTGGTATTTGATTTC+CGG | + | chr3_1:78716365-78716384 | Msa0378010:three_prime_UTR | 35.0% |
! | ATCTGTGGTATTTGATTTCC+GGG | + | chr3_1:78716366-78716385 | Msa0378010:three_prime_UTR | 35.0% |
TGAAGTTAGAAGTTCAACCT+GGG | + | chr3_1:78716390-78716409 | Msa0378010:three_prime_UTR | 35.0% | |
CGTCAAAGAGATGATTGTAT+CGG | + | chr3_1:78716425-78716444 | Msa0378010:three_prime_UTR | 35.0% | |
ACAAATCACACCTCTCTAAA+GGG | - | chr3_1:78716464-78716483 | None:intergenic | 35.0% | |
AGTTCATGATTACTTCTCTG+AGG | + | chr3_1:78716487-78716506 | Msa0378010:three_prime_UTR | 35.0% | |
GTTCATGATTACTTCTCTGA+GGG | + | chr3_1:78716488-78716507 | Msa0378010:three_prime_UTR | 35.0% | |
AATTAGATCCAAACGAACAG+GGG | - | chr3_1:78716525-78716544 | None:intergenic | 35.0% | |
GAATTAGATCCAAACGAACA+GGG | - | chr3_1:78716526-78716545 | None:intergenic | 35.0% | |
CTGTTCGTTTGGATCTAATT+CGG | + | chr3_1:78716525-78716544 | Msa0378010:three_prime_UTR | 35.0% | |
TGTTCGTTTGGATCTAATTC+GGG | + | chr3_1:78716526-78716545 | Msa0378010:three_prime_UTR | 35.0% | |
ATATGTTGCATCTTGAGACA+AGG | + | chr3_1:78716713-78716732 | Msa0378010:three_prime_UTR | 35.0% | |
TATGTTGCATCTTGAGACAA+GGG | + | chr3_1:78716714-78716733 | Msa0378010:three_prime_UTR | 35.0% | |
!! | GAACCCCTTTTGTTTCTTTC+TGG | + | chr3_1:78711656-78711675 | Msa0378010:five_prime_UTR | 40.0% |
!! | GCCTTGTTTGTTTATGATCG+AGG | - | chr3_1:78711774-78711793 | None:intergenic | 40.0% |
AAAGAGGTTCCAGAAATGGA+AGG | + | chr3_1:78712004-78712023 | Msa0378010:CDS | 40.0% | |
AAGAGGTTCCAGAAATGGAA+GGG | + | chr3_1:78712005-78712024 | Msa0378010:CDS | 40.0% | |
AACAACAACCCTTCCATTTC+TGG | - | chr3_1:78712016-78712035 | None:intergenic | 40.0% | |
GCTTATTGTCTTTCCTCTTG+TGG | + | chr3_1:78712069-78712088 | Msa0378010:CDS | 40.0% | |
TCTCTAACTTAGGTCCTGTT+TGG | + | chr3_1:78712204-78712223 | Msa0378010:intron | 40.0% | |
! | AGCTGCTTTCGTAAGTTATC+TGG | + | chr3_1:78712328-78712347 | Msa0378010:intron | 40.0% |
! | GCTGCTTTCGTAAGTTATCT+GGG | + | chr3_1:78712329-78712348 | Msa0378010:intron | 40.0% |
TACAGATCTAAGGACCTGAT+TGG | - | chr3_1:78712402-78712421 | None:intergenic | 40.0% | |
TGTATCTATGTTGAGCCTTC+TGG | + | chr3_1:78712485-78712504 | Msa0378010:CDS | 40.0% | |
GTATCTATGTTGAGCCTTCT+GGG | + | chr3_1:78712486-78712505 | Msa0378010:CDS | 40.0% | |
CAGTTGAAACTAAACCCAGA+AGG | - | chr3_1:78712503-78712522 | None:intergenic | 40.0% | |
! | CATGGAGGTTGATTAAAGTC+TGG | + | chr3_1:78712532-78712551 | Msa0378010:CDS | 40.0% |
! | AAAGTGAAGCACCTGTAAGA+TGG | + | chr3_1:78713638-78713657 | Msa0378010:intron | 40.0% |
! | AAGTGAAGCACCTGTAAGAT+GGG | + | chr3_1:78713639-78713658 | Msa0378010:intron | 40.0% |
CTATTGAACATGCTCCAACT+AGG | - | chr3_1:78713668-78713687 | None:intergenic | 40.0% | |
TTAGAGATAAAAGGAGGCCA+AGG | + | chr3_1:78713688-78713707 | Msa0378010:intron | 40.0% | |
! | CCATATTAATGGTTTGGCCA+TGG | - | chr3_1:78713725-78713744 | None:intergenic | 40.0% |
CCATGGCCAAACCATTAATA+TGG | + | chr3_1:78713722-78713741 | Msa0378010:intron | 40.0% | |
AATGTCCCCATCATGGAAAA+TGG | + | chr3_1:78713810-78713829 | Msa0378010:intron | 40.0% | |
!! | CAAAGCCATTTTCCATGATG+GGG | - | chr3_1:78713818-78713837 | None:intergenic | 40.0% |
!! | CCAAAGCCATTTTCCATGAT+GGG | - | chr3_1:78713819-78713838 | None:intergenic | 40.0% |
!! | ACCAAAGCCATTTTCCATGA+TGG | - | chr3_1:78713820-78713839 | None:intergenic | 40.0% |
CTTTATGCTGATATTCGTCC+AGG | + | chr3_1:78714080-78714099 | Msa0378010:intron | 40.0% | |
TTGCTTACATCTCCTACAAC+CGG | + | chr3_1:78714531-78714550 | Msa0378010:intron | 40.0% | |
! | AGACAGTTACGGTTGATGTT+TGG | + | chr3_1:78714739-78714758 | Msa0378010:intron | 40.0% |
! | GACAGTTACGGTTGATGTTT+GGG | + | chr3_1:78714740-78714759 | Msa0378010:intron | 40.0% |
GTTGATGTTTGGGAATACTC+AGG | + | chr3_1:78714750-78714769 | Msa0378010:intron | 40.0% | |
! | CTTGAACCAAGCACCAATTT+TGG | + | chr3_1:78714878-78714897 | Msa0378010:intron | 40.0% |
TTAATGCAACTGGCTATGTG+TGG | + | chr3_1:78715011-78715030 | Msa0378010:CDS | 40.0% | |
!! | AGTTGAGTGTGCTGATTAGT+TGG | + | chr3_1:78715243-78715262 | Msa0378010:intron | 40.0% |
CAACACTCTTTCTTTGCCTT+TGG | + | chr3_1:78715371-78715390 | Msa0378010:CDS | 40.0% | |
AGCATCAGGAAAATTCCCAA+AGG | - | chr3_1:78715390-78715409 | None:intergenic | 40.0% | |
CCTCATTGAAAACAAGCATC+AGG | - | chr3_1:78715404-78715423 | None:intergenic | 40.0% | |
!! | CCTGATGCTTGTTTTCAATG+AGG | + | chr3_1:78715401-78715420 | Msa0378010:CDS | 40.0% |
AAGCTAGGTAATCTCAGAAG+TGG | - | chr3_1:78715673-78715692 | None:intergenic | 40.0% | |
GTCATCACTAACCAAAAGCT+AGG | - | chr3_1:78715688-78715707 | None:intergenic | 40.0% | |
! | ATGACCTTCAGTGGAGTTTT+GGG | + | chr3_1:78715703-78715722 | Msa0378010:CDS | 40.0% |
TTGATGAAGAAACCACATGG+AGG | - | chr3_1:78715746-78715765 | None:intergenic | 40.0% | |
GTGGTTTCTTCATCAAACAG+GGG | + | chr3_1:78715750-78715769 | Msa0378010:CDS | 40.0% | |
!! | TTTGACTTGAGTTAGAACCG+TGG | - | chr3_1:78715937-78715956 | None:intergenic | 40.0% |
GCAGATGGCAAACTAGTTAT+TGG | - | chr3_1:78716044-78716063 | None:intergenic | 40.0% | |
! | AATGCAAATTGCAGGGCTTT+TGG | + | chr3_1:78716269-78716288 | Msa0378010:intron | 40.0% |
! | TTTTCGCTAGAGCCAAAATC+CGG | + | chr3_1:78716301-78716320 | Msa0378010:CDS | 40.0% |
CAATCCTGAAGAGCAGTATA+AGG | + | chr3_1:78716333-78716352 | Msa0378010:exon | 40.0% | |
! | TCTGTGGTATTTGATTTCCG+GGG | + | chr3_1:78716367-78716386 | Msa0378010:three_prime_UTR | 40.0% |
TTGAACTTCTAACTTCACCC+CGG | - | chr3_1:78716387-78716406 | None:intergenic | 40.0% | |
GTGAAGTTAGAAGTTCAACC+TGG | + | chr3_1:78716389-78716408 | Msa0378010:three_prime_UTR | 40.0% | |
! | AAGTTCAACCTGGGATTTTG+AGG | + | chr3_1:78716399-78716418 | Msa0378010:three_prime_UTR | 40.0% |
! | AACTATCTCACCCTTTAGAG+AGG | + | chr3_1:78716451-78716470 | Msa0378010:three_prime_UTR | 40.0% |
CACAAATCACACCTCTCTAA+AGG | - | chr3_1:78716465-78716484 | None:intergenic | 40.0% | |
!! | CTTCTCTGAGGGATAGTTTT+TGG | + | chr3_1:78716499-78716518 | Msa0378010:three_prime_UTR | 40.0% |
CGAATTAGATCCAAACGAAC+AGG | - | chr3_1:78716527-78716546 | None:intergenic | 40.0% | |
TTGGATTGCATTGCTAGCAA+TGG | + | chr3_1:78716558-78716577 | Msa0378010:three_prime_UTR | 40.0% | |
! | AGGGTCACATTTTCATGTGA+AGG | + | chr3_1:78716733-78716752 | Msa0378010:three_prime_UTR | 40.0% |
TCGAGGAGAAAAACCCATGA+AGG | - | chr3_1:78711757-78711776 | None:intergenic | 45.0% | |
CATCGTACTACACTCAACAC+AGG | + | chr3_1:78711844-78711863 | Msa0378010:five_prime_UTR | 45.0% | |
CAACTGAACCACTAACATGG+AGG | + | chr3_1:78712517-78712536 | Msa0378010:CDS | 45.0% | |
TCATCTTCCAAAGGGGATGA+TGG | + | chr3_1:78712670-78712689 | Msa0378010:intron | 45.0% | |
! | GGAGGCAGATAATTTGTGAC+TGG | + | chr3_1:78712691-78712710 | Msa0378010:intron | 45.0% |
AACTAGGCTACCCATCTTAC+AGG | - | chr3_1:78713652-78713671 | None:intergenic | 45.0% | |
TGTAAGATGGGTAGCCTAGT+TGG | + | chr3_1:78713651-78713670 | Msa0378010:intron | 45.0% | |
CCCATCATGGAAAATGGCTT+TGG | + | chr3_1:78713816-78713835 | Msa0378010:intron | 45.0% | |
CTTGTGTGCTCCCCAAAAAT+AGG | - | chr3_1:78714116-78714135 | None:intergenic | 45.0% | |
!! | ACACAAGCTCTGAACTCTTG+AGG | + | chr3_1:78714129-78714148 | Msa0378010:intron | 45.0% |
ACGAATGTCATAACTGCCGT+TGG | + | chr3_1:78714337-78714356 | Msa0378010:CDS | 45.0% | |
TTGTTCAGTAAGCACCACGA+AGG | + | chr3_1:78714370-78714389 | Msa0378010:CDS | 45.0% | |
!! | CTGGGCTGCTCTATTTCTAA+TGG | + | chr3_1:78714399-78714418 | Msa0378010:CDS | 45.0% |
!! | CAAAGTGGGGGTATCAAACA+CGG | - | chr3_1:78714461-78714480 | None:intergenic | 45.0% |
TTGATACCCCCACTTTGATG+TGG | + | chr3_1:78714464-78714483 | Msa0378010:intron | 45.0% | |
GTATATGTTGGCAACAGCAC+CGG | - | chr3_1:78714553-78714572 | None:intergenic | 45.0% | |
TTTCCAAAGGTCGAATACCG+TGG | + | chr3_1:78714586-78714605 | Msa0378010:intron | 45.0% | |
TTCCAAAGGTCGAATACCGT+GGG | + | chr3_1:78714587-78714606 | Msa0378010:intron | 45.0% | |
CTTACCATTCTGTTACTGCC+TGG | + | chr3_1:78715128-78715147 | Msa0378010:intron | 45.0% | |
TGGTTAGTGATGACCTTCAG+TGG | + | chr3_1:78715694-78715713 | Msa0378010:CDS | 45.0% | |
! | GATGACCTTCAGTGGAGTTT+TGG | + | chr3_1:78715702-78715721 | Msa0378010:CDS | 45.0% |
TAGACCCAAAACTCCACTGA+AGG | - | chr3_1:78715710-78715729 | None:intergenic | 45.0% | |
! | CAATTAGCTTCACCTCCATG+TGG | + | chr3_1:78715731-78715750 | Msa0378010:CDS | 45.0% |
AAACAGGGGCTACAACTTAC+AGG | + | chr3_1:78715764-78715783 | Msa0378010:CDS | 45.0% | |
! | TTTGCCATCTGCAGTCTTGT+AGG | + | chr3_1:78716052-78716071 | Msa0378010:intron | 45.0% |
AAGATACCACTCTCAGTTGC+TGG | + | chr3_1:78716085-78716104 | Msa0378010:CDS | 45.0% | |
GCAGAGTTCTCCAAACTAGT+AGG | - | chr3_1:78716130-78716149 | None:intergenic | 45.0% | |
CATTCTTGGTTCAACGCTGA+AGG | + | chr3_1:78716242-78716261 | Msa0378010:intron | 45.0% | |
TTTCGCTAGAGCCAAAATCC+GGG | + | chr3_1:78716302-78716321 | Msa0378010:CDS | 45.0% | |
! | TTGAGATCTCTCCCGGATTT+TGG | - | chr3_1:78716316-78716335 | None:intergenic | 45.0% |
TTCAGGATTGAGATCTCTCC+CGG | - | chr3_1:78716323-78716342 | None:intergenic | 45.0% | |
CTAATTCGGGAAGAGTTGCT+TGG | + | chr3_1:78716539-78716558 | Msa0378010:three_prime_UTR | 45.0% | |
GATTGCATTGCTAGCAATGG+AGG | + | chr3_1:78716561-78716580 | Msa0378010:three_prime_UTR | 45.0% | |
!! | AACATAAAAAAAAAAAAAAA+AGG | - | chr3_1:78716603-78716622 | None:intergenic | 5.0% |
CGTACTACACTCAACACAGG+CGG | + | chr3_1:78711847-78711866 | Msa0378010:five_prime_UTR | 50.0% | |
! | AATTGCGCCGCTTTGAATCG+CGG | - | chr3_1:78711903-78711922 | None:intergenic | 50.0% |
! | TCTTCCAAAGGGGATGATGG+AGG | + | chr3_1:78712673-78712692 | Msa0378010:intron | 50.0% |
AGGAGGCCAAGGAAAACTAG+AGG | + | chr3_1:78713699-78713718 | Msa0378010:intron | 50.0% | |
!!! | CCATGGCCTCTAGTTTTCCT+TGG | - | chr3_1:78713708-78713727 | None:intergenic | 50.0% |
CCAAGGAAAACTAGAGGCCA+TGG | + | chr3_1:78713705-78713724 | Msa0378010:intron | 50.0% | |
TTCCCACGGTATTCGACCTT+TGG | - | chr3_1:78714592-78714611 | None:intergenic | 50.0% | |
GCATCCAGGCAGTAACAGAA+TGG | - | chr3_1:78715135-78715154 | None:intergenic | 50.0% | |
TATTGCAGCTGACCCTACGA+AGG | + | chr3_1:78715280-78715299 | Msa0378010:intron | 50.0% | |
ATTGCAGCTGACCCTACGAA+GGG | + | chr3_1:78715281-78715300 | Msa0378010:intron | 50.0% | |
CGTATCCATGACCCTTCGTA+GGG | - | chr3_1:78715295-78715314 | None:intergenic | 50.0% | |
CCTACGAAGGGTCATGGATA+CGG | + | chr3_1:78715293-78715312 | Msa0378010:CDS | 50.0% | |
CGAACCTACAAGACTGCAGA+TGG | - | chr3_1:78716059-78716078 | None:intergenic | 50.0% | |
! | GCAAATTGCAGGGCTTTTGG+CGG | + | chr3_1:78716272-78716291 | Msa0378010:intron | 50.0% |
! | CAAATTGCAGGGCTTTTGGC+GGG | + | chr3_1:78716273-78716292 | Msa0378010:intron | 50.0% |
TGACGACACCTCAAAATCCC+AGG | - | chr3_1:78716410-78716429 | None:intergenic | 50.0% | |
!!! | GTTTTTGGCCCCTGTTCGTT+TGG | + | chr3_1:78716514-78716533 | Msa0378010:three_prime_UTR | 50.0% |
TCTGCCTCCATCATCCCCTT+TGG | - | chr3_1:78712680-78712699 | None:intergenic | 55.0% | |
!! | TTGGCAACAGCACCGGTTGT+AGG | - | chr3_1:78714546-78714565 | None:intergenic | 55.0% |
CCGTATCCATGACCCTTCGT+AGG | - | chr3_1:78715296-78715315 | None:intergenic | 55.0% | |
GGGGCTACAACTTACAGGTG+TGG | + | chr3_1:78715769-78715788 | Msa0378010:intron | 55.0% | |
AGGATGCCAGCAACTGAGAG+TGG | - | chr3_1:78716094-78716113 | None:intergenic | 55.0% | |
ACACTCAACACAGGCGGAGC+TGG | + | chr3_1:78711853-78711872 | Msa0378010:five_prime_UTR | 60.0% | |
AGCACCACGAAGGCAGAGTC+TGG | + | chr3_1:78714380-78714399 | Msa0378010:CDS | 60.0% | |
GCACCACGAAGGCAGAGTCT+GGG | + | chr3_1:78714381-78714400 | Msa0378010:CDS | 60.0% | |
GCTGACCCTACGAAGGGTCA+TGG | + | chr3_1:78715287-78715306 | Msa0378010:intron | 60.0% | |
CTCAACACAGGCGGAGCTGG+TGG | + | chr3_1:78711856-78711875 | Msa0378010:five_prime_UTR | 65.0% | |
ACACAGGCGGAGCTGGTGGT+CGG | + | chr3_1:78711860-78711879 | Msa0378010:five_prime_UTR | 65.0% | |
! | CGCTTTGAATCGCGGTGGCG+CGG | - | chr3_1:78711895-78711914 | None:intergenic | 65.0% |
CGCGCCACCGCGATTCAAAG+CGG | + | chr3_1:78711893-78711912 | Msa0378010:five_prime_UTR | 65.0% | |
! | TGCGCCGCTTTGAATCGCGG+TGG | - | chr3_1:78711900-78711919 | None:intergenic | 65.0% |
CAGCCCAGACTCTGCCTTCG+TGG | - | chr3_1:78714387-78714406 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 78711419 | 78716834 | 78711419 | ID=Msa0378010;Name=Msa0378010 |
chr3_1 | mRNA | 78711419 | 78716834 | 78711419 | ID=Msa0378010-mRNA-1;Parent=Msa0378010;Name=Msa0378010-mRNA-1;_AED=0.07;_eAED=0.07;_QI=515|1|1|1|1|1|8|493|342 |
chr3_1 | exon | 78711419 | 78712164 | 78711419 | ID=Msa0378010-mRNA-1:exon:19067;Parent=Msa0378010-mRNA-1 |
chr3_1 | exon | 78712465 | 78712604 | 78712465 | ID=Msa0378010-mRNA-1:exon:19068;Parent=Msa0378010-mRNA-1 |
chr3_1 | exon | 78714291 | 78714420 | 78714291 | ID=Msa0378010-mRNA-1:exon:19069;Parent=Msa0378010-mRNA-1 |
chr3_1 | exon | 78714971 | 78715069 | 78714971 | ID=Msa0378010-mRNA-1:exon:19070;Parent=Msa0378010-mRNA-1 |
chr3_1 | exon | 78715288 | 78715442 | 78715288 | ID=Msa0378010-mRNA-1:exon:19071;Parent=Msa0378010-mRNA-1 |
chr3_1 | exon | 78715669 | 78715785 | 78715669 | ID=Msa0378010-mRNA-1:exon:19072;Parent=Msa0378010-mRNA-1 |
chr3_1 | exon | 78716066 | 78716163 | 78716066 | ID=Msa0378010-mRNA-1:exon:19073;Parent=Msa0378010-mRNA-1 |
chr3_1 | exon | 78716283 | 78716834 | 78716283 | ID=Msa0378010-mRNA-1:exon:19074;Parent=Msa0378010-mRNA-1 |
chr3_1 | five_prime_UTR | 78711419 | 78711933 | 78711419 | ID=Msa0378010-mRNA-1:five_prime_utr;Parent=Msa0378010-mRNA-1 |
chr3_1 | CDS | 78711934 | 78712164 | 78711934 | ID=Msa0378010-mRNA-1:cds;Parent=Msa0378010-mRNA-1 |
chr3_1 | CDS | 78712465 | 78712604 | 78712465 | ID=Msa0378010-mRNA-1:cds;Parent=Msa0378010-mRNA-1 |
chr3_1 | CDS | 78714291 | 78714420 | 78714291 | ID=Msa0378010-mRNA-1:cds;Parent=Msa0378010-mRNA-1 |
chr3_1 | CDS | 78714971 | 78715069 | 78714971 | ID=Msa0378010-mRNA-1:cds;Parent=Msa0378010-mRNA-1 |
chr3_1 | CDS | 78715288 | 78715442 | 78715288 | ID=Msa0378010-mRNA-1:cds;Parent=Msa0378010-mRNA-1 |
chr3_1 | CDS | 78715669 | 78715785 | 78715669 | ID=Msa0378010-mRNA-1:cds;Parent=Msa0378010-mRNA-1 |
chr3_1 | CDS | 78716066 | 78716163 | 78716066 | ID=Msa0378010-mRNA-1:cds;Parent=Msa0378010-mRNA-1 |
chr3_1 | CDS | 78716283 | 78716341 | 78716283 | ID=Msa0378010-mRNA-1:cds;Parent=Msa0378010-mRNA-1 |
chr3_1 | three_prime_UTR | 78716342 | 78716834 | 78716342 | ID=Msa0378010-mRNA-1:three_prime_utr;Parent=Msa0378010-mRNA-1 |
Gene Sequence |
Protein sequence |