AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0378010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0378010 MtrunA17_Chr3g0130221 99.708 342 1 0 1 342 1 342 0.0 687
Msa0378010 MtrunA17_Chr3g0104471 62.048 332 114 2 17 336 67 398 2.53e-148 423
Msa0378010 MtrunA17_Chr5g0393851 86.486 74 5 1 264 337 1 69 7.40e-35 122
Msa0378010 MtrunA17_Chr3g0114581 23.432 303 216 6 39 335 14 306 4.95e-16 78.2
Msa0378010 MtrunA17_Chr1g0160071 22.772 303 218 5 39 335 13 305 2.18e-15 76.3
Msa0378010 MtrunA17_Chr2g0317521 23.647 351 238 5 3 337 1 337 1.87e-14 73.6
Msa0378010 MtrunA17_Chr1g0149401 23.611 360 232 9 1 336 1 341 2.22e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0378010 AT2G13650.3 78.107 338 69 1 3 340 1 333 0.0 518
Msa0378010 AT2G13650.1 78.107 338 69 1 3 340 1 333 0.0 518
Msa0378010 AT2G13650.7 77.083 288 61 1 3 290 1 283 1.63e-153 432
Msa0378010 AT2G13650.2 77.083 288 61 1 3 290 1 283 1.63e-153 432
Msa0378010 AT2G13650.4 84.332 217 34 0 124 340 28 244 2.11e-126 362
Msa0378010 AT2G13650.5 84.332 217 34 0 124 340 28 244 2.11e-126 362
Msa0378010 AT2G13650.6 82.564 195 34 0 146 340 14 208 2.41e-111 323
Msa0378010 AT1G07290.1 53.177 299 113 3 41 336 79 353 1.22e-100 301
Msa0378010 AT1G21870.1 24.653 288 197 7 39 318 14 289 1.71e-15 77.0
Msa0378010 AT4G32272.1 25.217 345 226 8 10 339 17 344 4.53e-15 75.5
Msa0378010 AT1G77610.1 23.958 288 199 8 39 318 8 283 6.26e-14 72.4
Msa0378010 AT4G32272.2 25.070 359 236 9 2 339 13 359 9.14e-14 72.0
Msa0378010 AT5G19980.1 24.916 297 206 6 45 334 19 305 2.46e-13 70.5

Find 124 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACAACCCTTCCATTTC+TGG 0.079663 3_1:-78712013 None:intergenic
TGTATCTATGTTGAGCCTTC+TGG 0.107830 3_1:+78712485 Msa0378010:CDS
GATCTGTGGTATTTGATTTC+CGG 0.174220 3_1:+78716365 Msa0378010:three_prime_UTR
GATGAACATGATGAAGAAAA+AGG 0.229009 3_1:+78711958 Msa0378010:CDS
GATGACCTTCAGTGGAGTTT+TGG 0.230548 3_1:+78715702 Msa0378010:CDS
TTGAGATCTCTCCCGGATTT+TGG 0.239239 3_1:-78716313 None:intergenic
CAACACTCTTTCTTTGCCTT+TGG 0.245089 3_1:+78715371 Msa0378010:CDS
TGGATATTTCAACTCACTAT+TGG 0.245357 3_1:-78711605 None:intergenic
CTTTAAAGTTCCTACTAGTT+TGG 0.268107 3_1:+78716117 Msa0378010:CDS
TTTGCCATCTGCAGTCTTGT+AGG 0.269187 3_1:+78716052 Msa0378010:intron
AATTCCTTATACTGCTCTTC+AGG 0.279874 3_1:-78716337 None:intergenic
AAGAAGAAGCACATGAGTTT+TGG 0.282212 3_1:+78711544 Msa0378010:five_prime_UTR
CATAATCAAGCCTTATTATC+TGG 0.283461 3_1:+78712042 Msa0378010:CDS
ATCTGTGGTATTTGATTTCC+GGG 0.298914 3_1:+78716366 Msa0378010:three_prime_UTR
TTCTGAGATTACCTAGCTTT+TGG 0.301861 3_1:+78715674 Msa0378010:CDS
CAGATCATTTCAGCAATAAC+TGG 0.302251 3_1:+78714968 Msa0378010:intron
CTGTTCGTTTGGATCTAATT+CGG 0.307824 3_1:+78716525 Msa0378010:three_prime_UTR
ATAAGCAAGTCCAGATAATA+AGG 0.308574 3_1:-78712052 None:intergenic
GTATCTATGTTGAGCCTTCT+GGG 0.310178 3_1:+78712486 Msa0378010:CDS
AACACTCTTTCTTTGCCTTT+GGG 0.312536 3_1:+78715372 Msa0378010:CDS
AATGCAAATTGCAGGGCTTT+TGG 0.315045 3_1:+78716269 Msa0378010:intron
GTTGATTAAAGTCTGGTTTC+CGG 0.328959 3_1:+78712539 Msa0378010:CDS
CCGGTCAATGTTATATTTGT+TGG 0.334498 3_1:+78712558 Msa0378010:CDS
ATGTGGTTTCTTCATCAAAC+AGG 0.337762 3_1:+78715748 Msa0378010:CDS
GCAAAGCAATATACTAAATC+TGG 0.337794 3_1:+78715315 Msa0378010:CDS
ATTAAACTCATAATCCTTCA+TGG 0.340340 3_1:+78711740 Msa0378010:five_prime_UTR
GGATATTTCAACTCACTATT+GGG 0.344944 3_1:-78711604 None:intergenic
AAACAGGGGCTACAACTTAC+AGG 0.345308 3_1:+78715764 Msa0378010:CDS
AATATCCTTGATGGTGTATC+AGG 0.361970 3_1:+78712143 Msa0378010:CDS
AGCACCACGAAGGCAGAGTC+TGG 0.363622 3_1:+78714380 Msa0378010:CDS
ATGAGTTTAATAAAGAGAAT+TGG 0.369852 3_1:-78711728 None:intergenic
CAATCCTGAAGAGCAGTATA+AGG 0.371628 3_1:+78716333 Msa0378010:exon
TTAATCAACCTCCATGTTAG+TGG 0.382334 3_1:-78712525 None:intergenic
TGTTCGTTTGGATCTAATTC+GGG 0.395941 3_1:+78716526 Msa0378010:three_prime_UTR
CAGCCCAGACTCTGCCTTCG+TGG 0.401927 3_1:-78714384 None:intergenic
GTGGATGCAGAATTTCATTT+CGG 0.402301 3_1:+78712455 Msa0378010:intron
GCTTATTGTCTTTCCTCTTG+TGG 0.404397 3_1:+78712069 Msa0378010:CDS
CGAATTAGATCCAAACGAAC+AGG 0.408996 3_1:-78716524 None:intergenic
CTGGGCTGCTCTATTTCTAA+TGG 0.414829 3_1:+78714399 Msa0378010:CDS
TGCTAATTACAAGCATGTTT+AGG 0.418078 3_1:+78712583 Msa0378010:CDS
AAAGAAAGAGGTTCCAGAAA+TGG 0.421951 3_1:+78712000 Msa0378010:CDS
ATAAAGAGAATTGGATGAAG+AGG 0.424946 3_1:-78711719 None:intergenic
CATGAAAATGAAGTCTTCTT+CGG 0.425537 3_1:+78711933 Msa0378010:exon
AAGATACCACTCTCAGTTGC+TGG 0.429416 3_1:+78716085 Msa0378010:CDS
CATGGAGGTTGATTAAAGTC+TGG 0.433566 3_1:+78712532 Msa0378010:CDS
TAATGCTGGAATATCCTTGA+TGG 0.436279 3_1:+78712134 Msa0378010:CDS
AGAGAAATATTGAAATTTGA+GGG 0.439146 3_1:-78711694 None:intergenic
AAGAGAAATATTGAAATTTG+AGG 0.439743 3_1:-78711695 None:intergenic
TTCAGGATTGAGATCTCTCC+CGG 0.444271 3_1:-78716320 None:intergenic
CGCTTTGAATCGCGGTGGCG+CGG 0.452831 3_1:-78711892 None:intergenic
CACAAATCACACCTCTCTAA+AGG 0.456138 3_1:-78716462 None:intergenic
ACAAATCACACCTCTCTAAA+GGG 0.461401 3_1:-78716461 None:intergenic
CTAATTCGGGAAGAGTTGCT+TGG 0.470494 3_1:+78716539 Msa0378010:three_prime_UTR
CCTCATTGAAAACAAGCATC+AGG 0.478139 3_1:-78715401 None:intergenic
GCAGAGTTCTCCAAACTAGT+AGG 0.485666 3_1:-78716127 None:intergenic
CCAACAAATATAACATTGAC+CGG 0.496391 3_1:-78712558 None:intergenic
CCGTATCCATGACCCTTCGT+AGG 0.502069 3_1:-78715293 None:intergenic
ACACTCAACACAGGCGGAGC+TGG 0.504574 3_1:+78711853 Msa0378010:five_prime_UTR
TAAAGAGAATTGGATGAAGA+GGG 0.505183 3_1:-78711718 None:intergenic
TTAAACTCATAATCCTTCAT+GGG 0.505292 3_1:+78711741 Msa0378010:five_prime_UTR
TGAACCCAGAAAGAAACAAA+AGG 0.507165 3_1:-78711661 None:intergenic
GAACCCAGAAAGAAACAAAA+GGG 0.507996 3_1:-78711660 None:intergenic
GAAATACATTAATGTGGCTA+TGG 0.516838 3_1:+78714294 Msa0378010:CDS
CCTACGAAGGGTCATGGATA+CGG 0.527759 3_1:+78715293 Msa0378010:CDS
TGGTTAGTGATGACCTTCAG+TGG 0.534587 3_1:+78715694 Msa0378010:CDS
GCCTTGTTTGTTTATGATCG+AGG 0.535945 3_1:-78711771 None:intergenic
GCTGACCCTACGAAGGGTCA+TGG 0.537855 3_1:+78715287 Msa0378010:intron
GTGAAGTTAGAAGTTCAACC+TGG 0.538327 3_1:+78716389 Msa0378010:three_prime_UTR
CGCGCCACCGCGATTCAAAG+CGG 0.538704 3_1:+78711893 Msa0378010:five_prime_UTR
GATTGCATTGCTAGCAATGG+AGG 0.553491 3_1:+78716561 Msa0378010:three_prime_UTR
GTTGAAATATCCACAAAAGT+TGG 0.555443 3_1:+78711615 Msa0378010:five_prime_UTR
AACTAAAATCATTCCACAAG+AGG 0.562641 3_1:-78712082 None:intergenic
CGTATCCATGACCCTTCGTA+GGG 0.564291 3_1:-78715292 None:intergenic
TTTCGCTAGAGCCAAAATCC+GGG 0.569283 3_1:+78716302 Msa0378010:CDS
AAAGAGGTTCCAGAAATGGA+AGG 0.572735 3_1:+78712004 Msa0378010:CDS
TGACGACACCTCAAAATCCC+AGG 0.575984 3_1:-78716407 None:intergenic
ACACAGGCGGAGCTGGTGGT+CGG 0.576955 3_1:+78711860 Msa0378010:five_prime_UTR
AATTGCGCCGCTTTGAATCG+CGG 0.578945 3_1:-78711900 None:intergenic
AACTATCTCACCCTTTAGAG+AGG 0.578986 3_1:+78716451 Msa0378010:three_prime_UTR
TAGTAGGAACTTTAAAGAGA+AGG 0.579923 3_1:-78716111 None:intergenic
GTCATCACTAACCAAAAGCT+AGG 0.580842 3_1:-78715685 None:intergenic
TTTCAACTGAACCACTAACA+TGG 0.581249 3_1:+78712514 Msa0378010:CDS
TTGGATTGCATTGCTAGCAA+TGG 0.583211 3_1:+78716558 Msa0378010:three_prime_UTR
CTCAACACAGGCGGAGCTGG+TGG 0.585956 3_1:+78711856 Msa0378010:five_prime_UTR
TGTGGTTTCTTCATCAAACA+GGG 0.587936 3_1:+78715749 Msa0378010:CDS
TCCTCGATCATAAACAAACA+AGG 0.590957 3_1:+78711770 Msa0378010:five_prime_UTR
GCACCACGAAGGCAGAGTCT+GGG 0.591892 3_1:+78714381 Msa0378010:CDS
GTTCATGATTACTTCTCTGA+GGG 0.593247 3_1:+78716488 Msa0378010:three_prime_UTR
CGTCAAAGAGATGATTGTAT+CGG 0.595188 3_1:+78716425 Msa0378010:three_prime_UTR
ATCATTTCAGCAATAACTGG+AGG 0.613231 3_1:+78714971 Msa0378010:CDS
CAGTTTGAAATACATTAATG+TGG 0.616131 3_1:+78714288 Msa0378010:intron
TGCGCCGCTTTGAATCGCGG+TGG 0.616443 3_1:-78711897 None:intergenic
GAATTAGATCCAAACGAACA+GGG 0.618840 3_1:-78716523 None:intergenic
AGTTCATGATTACTTCTCTG+AGG 0.619402 3_1:+78716487 Msa0378010:three_prime_UTR
TCATTTCAGCAATAACTGGA+GGG 0.623711 3_1:+78714972 Msa0378010:CDS
AAGCTAGGTAATCTCAGAAG+TGG 0.624340 3_1:-78715670 None:intergenic
AGGATGCCAGCAACTGAGAG+TGG 0.626159 3_1:-78716091 None:intergenic
TATTGCAGCTGACCCTACGA+AGG 0.633946 3_1:+78715280 Msa0378010:intron
ATATGTTGCATCTTGAGACA+AGG 0.635225 3_1:+78716713 Msa0378010:three_prime_UTR
TATGTTGCATCTTGAGACAA+GGG 0.637981 3_1:+78716714 Msa0378010:three_prime_UTR
AAATTTAAATGAGTTTACGA+TGG 0.641617 3_1:+78715338 Msa0378010:CDS
TAGACCCAAAACTCCACTGA+AGG 0.641650 3_1:-78715707 None:intergenic
TTAATGCAACTGGCTATGTG+TGG 0.643415 3_1:+78715011 Msa0378010:CDS
AATTAGATCCAAACGAACAG+GGG 0.648320 3_1:-78716522 None:intergenic
AAGAGGTTCCAGAAATGGAA+GGG 0.648638 3_1:+78712005 Msa0378010:CDS
AATTACCTGATACACCATCA+AGG 0.651962 3_1:-78712148 None:intergenic
TGAAGTTAGAAGTTCAACCT+GGG 0.655445 3_1:+78716390 Msa0378010:three_prime_UTR
CAGTTGAAACTAAACCCAGA+AGG 0.657499 3_1:-78712500 None:intergenic
CAATTAGCTTCACCTCCATG+TGG 0.658205 3_1:+78715731 Msa0378010:CDS
ATTGCAGCTGACCCTACGAA+GGG 0.668006 3_1:+78715281 Msa0378010:intron
GAACAAGTACATTTCACCAA+CGG 0.669904 3_1:-78714353 None:intergenic
AGCATCAGGAAAATTCCCAA+AGG 0.675180 3_1:-78715387 None:intergenic
AACCCAGAAAGAAACAAAAG+GGG 0.678664 3_1:-78711659 None:intergenic
ACGAATGTCATAACTGCCGT+TGG 0.688649 3_1:+78714337 Msa0378010:CDS
TTGAACTTCTAACTTCACCC+CGG 0.689216 3_1:-78716384 None:intergenic
CATCGTACTACACTCAACAC+AGG 0.696953 3_1:+78711844 Msa0378010:five_prime_UTR
TGTTTGATGAAGAAACCACA+TGG 0.697962 3_1:-78715746 None:intergenic
GTGGTTTCTTCATCAAACAG+GGG 0.705100 3_1:+78715750 Msa0378010:CDS
CAACTGAACCACTAACATGG+AGG 0.707867 3_1:+78712517 Msa0378010:CDS
CGTACTACACTCAACACAGG+CGG 0.711494 3_1:+78711847 Msa0378010:five_prime_UTR
TTGTTCAGTAAGCACCACGA+AGG 0.728813 3_1:+78714370 Msa0378010:CDS
TCTGTGGTATTTGATTTCCG+GGG 0.753153 3_1:+78716367 Msa0378010:three_prime_UTR
AAATTGTCAAGTGATACATG+AGG 0.779215 3_1:-78716650 None:intergenic
TTGATGAAGAAACCACATGG+AGG 0.813768 3_1:-78715743 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTACTATAAATATTTTTT+AGG + chr3_1:78714815-78714834 Msa0378010:intron 10.0%
!!! TATTTTCATATGATAATGTT+TGG + chr3_1:78712744-78712763 Msa0378010:intron 15.0%
!! CAAAAATATTTATGTTTAAG+AGG - chr3_1:78713405-78713424 None:intergenic 15.0%
!!! AAACATAAATATTTTTGTGA+CGG + chr3_1:78713408-78713427 Msa0378010:intron 15.0%
!! ATTATTTATGATAAGATACT+AGG + chr3_1:78713774-78713793 Msa0378010:intron 15.0%
!! TTATTTATGATAAGATACTA+GGG + chr3_1:78713775-78713794 Msa0378010:intron 15.0%
!!! CTTTTCTAATTATTGTTTAT+TGG + chr3_1:78713898-78713917 Msa0378010:intron 15.0%
!!! ATTTTATTTCTCTACTTTTT+AGG + chr3_1:78714614-78714633 Msa0378010:intron 15.0%
!!! TCCAATTTAATATATTGATT+GGG - chr3_1:78715881-78715900 None:intergenic 15.0%
!! AGAGAAATATTGAAATTTGA+GGG - chr3_1:78711697-78711716 None:intergenic 20.0%
!! AAGAGAAATATTGAAATTTG+AGG - chr3_1:78711698-78711717 None:intergenic 20.0%
!! ATGAGTTTAATAAAGAGAAT+TGG - chr3_1:78711731-78711750 None:intergenic 20.0%
!!! ATAGTTTAATGATGATGTAA+AGG + chr3_1:78712421-78712440 Msa0378010:intron 20.0%
!!! TTAATTTGTTTATCCAAACA+AGG + chr3_1:78713006-78713025 Msa0378010:intron 20.0%
!! TCTCAAACTTAATAACTAAT+AGG - chr3_1:78713032-78713051 None:intergenic 20.0%
!!! TTAAAATGAAAGTACAATAG+AGG + chr3_1:78713302-78713321 Msa0378010:intron 20.0%
!!! TAAAATGAAAGTACAATAGA+GGG + chr3_1:78713303-78713322 Msa0378010:intron 20.0%
!! TAAAACCAAATCCATATTAA+TGG - chr3_1:78713736-78713755 None:intergenic 20.0%
!! TCTAATTATTGTTTATTGGT+AGG + chr3_1:78713902-78713921 Msa0378010:intron 20.0%
!!! AATAATTTTCTTTTTGCTGA+TGG + chr3_1:78713960-78713979 Msa0378010:intron 20.0%
!!! ATAATTTTCTTTTTGCTGAT+GGG + chr3_1:78713961-78713980 Msa0378010:intron 20.0%
!! TTAAAAAAAGTAGTAGTATG+CGG + chr3_1:78714003-78714022 Msa0378010:intron 20.0%
!!! TTTTTAGGTTACATAAATGA+TGG + chr3_1:78714629-78714648 Msa0378010:intron 20.0%
!! ATTTAAAAACATGAGATGTT+TGG - chr3_1:78714916-78714935 None:intergenic 20.0%
!! AAATTTAAATGAGTTTACGA+TGG + chr3_1:78715338-78715357 Msa0378010:CDS 20.0%
!! TTGCAAAACGAAAAAATATA+GGG - chr3_1:78715610-78715629 None:intergenic 20.0%
!! TTTGCAAAACGAAAAAATAT+AGG - chr3_1:78715611-78715630 None:intergenic 20.0%
!! ATTAATGTATTTCAATTGAC+AGG + chr3_1:78715647-78715666 Msa0378010:intron 20.0%
!! AAATTAAATTTGTCGCATTT+AGG - chr3_1:78715847-78715866 None:intergenic 20.0%
!! TCCCAATCAATATATTAAAT+TGG + chr3_1:78715877-78715896 Msa0378010:intron 20.0%
!! GTCCAATTTAATATATTGAT+TGG - chr3_1:78715882-78715901 None:intergenic 20.0%
!!! ATAATTTTTCTGATATAGCA+CGG - chr3_1:78716002-78716021 None:intergenic 20.0%
! ATTAAACTCATAATCCTTCA+TGG + chr3_1:78711740-78711759 Msa0378010:five_prime_UTR 25.0%
! TTAAACTCATAATCCTTCAT+GGG + chr3_1:78711741-78711760 Msa0378010:five_prime_UTR 25.0%
! ATGAACATGATGAAGAAAAA+GGG + chr3_1:78711959-78711978 Msa0378010:CDS 25.0%
!!! TCTAGTTATGATTTTAATGC+TGG + chr3_1:78712120-78712139 Msa0378010:CDS 25.0%
! AGAAATAGCTTATACATAAG+TGG - chr3_1:78712262-78712281 None:intergenic 25.0%
! CATTAAACTATACAGATCTA+AGG - chr3_1:78712412-78712431 None:intergenic 25.0%
!! TCATATGATAATGTTTGGAT+TGG + chr3_1:78712749-78712768 Msa0378010:intron 25.0%
!! TAGTTATTAAGTTTGAGATG+TGG + chr3_1:78713034-78713053 Msa0378010:intron 25.0%
!! AAAATGAAAGTACAATAGAG+GGG + chr3_1:78713304-78713323 Msa0378010:intron 25.0%
! TCTTGCTTAAATTCTACATT+TGG - chr3_1:78713334-78713353 None:intergenic 25.0%
! TTTAAGCAAGATAGATGAAA+TGG + chr3_1:78713343-78713362 Msa0378010:intron 25.0%
!! TAATTTTCTATGAGATTGAG+TGG + chr3_1:78713448-78713467 Msa0378010:intron 25.0%
!! AAAGCATTAAAGAGAAGTTA+GGG + chr3_1:78713562-78713581 Msa0378010:intron 25.0%
! GTTCAATAGTTAGAGATAAA+AGG + chr3_1:78713679-78713698 Msa0378010:intron 25.0%
! ATTAGATTTCAAAAAACTGG+AGG - chr3_1:78713862-78713881 None:intergenic 25.0%
! GAGATTAGATTTCAAAAAAC+TGG - chr3_1:78713865-78713884 None:intergenic 25.0%
!!! GAAACACTATTCCTATTTTT+GGG + chr3_1:78714102-78714121 Msa0378010:intron 25.0%
!!! AAACACTATTCCTATTTTTG+GGG + chr3_1:78714103-78714122 Msa0378010:intron 25.0%
!! ATTTTTCCAGTCTCAATTTA+TGG + chr3_1:78714189-78714208 Msa0378010:intron 25.0%
!! CAGTTTGAAATACATTAATG+TGG + chr3_1:78714288-78714307 Msa0378010:intron 25.0%
!!! TGTTTTACCTTTTTAAGTTC+TGG + chr3_1:78714502-78714521 Msa0378010:intron 25.0%
! TACAATAAAGCAGTATATGT+TGG - chr3_1:78714565-78714584 None:intergenic 25.0%
! GAGAAATAAAATATTTCCCA+CGG - chr3_1:78714606-78714625 None:intergenic 25.0%
! CAACTATATCATACTCAATT+TGG - chr3_1:78714717-78714736 None:intergenic 25.0%
GGATATTTCAACTCACTATT+GGG - chr3_1:78711607-78711626 None:intergenic 30.0%
TGGATATTTCAACTCACTAT+TGG - chr3_1:78711608-78711627 None:intergenic 30.0%
GTTGAAATATCCACAAAAGT+TGG + chr3_1:78711615-78711634 Msa0378010:five_prime_UTR 30.0%
!!! AAAAAAGGTACCAACTTTTG+TGG - chr3_1:78711628-78711647 None:intergenic 30.0%
TAAAGAGAATTGGATGAAGA+GGG - chr3_1:78711721-78711740 None:intergenic 30.0%
ATAAAGAGAATTGGATGAAG+AGG - chr3_1:78711722-78711741 None:intergenic 30.0%
CATGAAAATGAAGTCTTCTT+CGG + chr3_1:78711933-78711952 Msa0378010:exon 30.0%
GATGAACATGATGAAGAAAA+AGG + chr3_1:78711958-78711977 Msa0378010:CDS 30.0%
TTGGAAAAAAGCAAAGAAAG+AGG + chr3_1:78711988-78712007 Msa0378010:CDS 30.0%
!! CATAATCAAGCCTTATTATC+TGG + chr3_1:78712042-78712061 Msa0378010:CDS 30.0%
ATAAGCAAGTCCAGATAATA+AGG - chr3_1:78712055-78712074 None:intergenic 30.0%
AACTAAAATCATTCCACAAG+AGG - chr3_1:78712085-78712104 None:intergenic 30.0%
AGAAGAAAACACAGAAAAAG+GGG - chr3_1:78712187-78712206 None:intergenic 30.0%
GAGAAGAAAACACAGAAAAA+GGG - chr3_1:78712188-78712207 None:intergenic 30.0%
AGAGAAGAAAACACAGAAAA+AGG - chr3_1:78712189-78712208 None:intergenic 30.0%
! TGTGTTTTCTTCTCTAACTT+AGG + chr3_1:78712194-78712213 Msa0378010:intron 30.0%
AATAAGCCATTTATCCAAAC+AGG - chr3_1:78712221-78712240 None:intergenic 30.0%
AGCTTATACATAAGTGGTTA+TGG - chr3_1:78712256-78712275 None:intergenic 30.0%
TCAAATAAGTCAATCCAATC+AGG + chr3_1:78712385-78712404 Msa0378010:intron 30.0%
! TGTAAAGGTTCATACTTTTG+TGG + chr3_1:78712436-78712455 Msa0378010:intron 30.0%
CCAACAAATATAACATTGAC+CGG - chr3_1:78712561-78712580 None:intergenic 30.0%
TGCTAATTACAAGCATGTTT+AGG + chr3_1:78712583-78712602 Msa0378010:CDS 30.0%
! GTATGAAGTCTTTAACTTTG+AGG + chr3_1:78712605-78712624 Msa0378010:intron 30.0%
ATATGTCAATCATCTTCCAA+AGG + chr3_1:78712661-78712680 Msa0378010:intron 30.0%
TATGTCAATCATCTTCCAAA+GGG + chr3_1:78712662-78712681 Msa0378010:intron 30.0%
! ACTGTTTTCACAAGATATCT+TGG - chr3_1:78712886-78712905 None:intergenic 30.0%
!! AATAACTAATAGGCCTTGTT+TGG - chr3_1:78713022-78713041 None:intergenic 30.0%
AAATTGTCAGACTTGTAATC+TGG - chr3_1:78713140-78713159 None:intergenic 30.0%
AAATTGTCAGACTTGTAATC+TGG - chr3_1:78713140-78713159 None:intergenic 30.0%
! AAATGAAAGTACAATAGAGG+GGG + chr3_1:78713305-78713324 Msa0378010:intron 30.0%
!! GAAAGCATTAAAGAGAAGTT+AGG + chr3_1:78713561-78713580 Msa0378010:intron 30.0%
CAATAGTTAGAGATAAAAGG+AGG + chr3_1:78713682-78713701 Msa0378010:intron 30.0%
CCAAATCCATATTAATGGTT+TGG - chr3_1:78713731-78713750 None:intergenic 30.0%
CCAAACCATTAATATGGATT+TGG + chr3_1:78713728-78713747 Msa0378010:intron 30.0%
ATTGTTTATTGGTAGGTACT+AGG + chr3_1:78713909-78713928 Msa0378010:intron 30.0%
GATTCCATTTATGAGTATTC+TGG + chr3_1:78714038-78714057 Msa0378010:intron 30.0%
TACACCAGAATACTCATAAA+TGG - chr3_1:78714045-78714064 None:intergenic 30.0%
AAAATAGGAATAGTGTTTCC+TGG - chr3_1:78714101-78714120 None:intergenic 30.0%
! GGAAACACTATTCCTATTTT+TGG + chr3_1:78714101-78714120 Msa0378010:intron 30.0%
GTAAATCCATAAATTGAGAC+TGG - chr3_1:78714198-78714217 None:intergenic 30.0%
GAAATACATTAATGTGGCTA+TGG + chr3_1:78714294-78714313 Msa0378010:CDS 30.0%
ACATTATTCCACATCAAAGT+GGG - chr3_1:78714475-78714494 None:intergenic 30.0%
TACATTATTCCACATCAAAG+TGG - chr3_1:78714476-78714495 None:intergenic 30.0%
AAACAAGCCAGAACTTAAAA+AGG - chr3_1:78714512-78714531 None:intergenic 30.0%
! TGCTTTATTGTAGTTTCCAA+AGG + chr3_1:78714573-78714592 Msa0378010:intron 30.0%
!! TGAAGTTGAATTGGTGTTTT+AGG + chr3_1:78714653-78714672 Msa0378010:intron 30.0%
TAACAATGAAGAGTTTCAAG+TGG - chr3_1:78714851-78714870 None:intergenic 30.0%
GTAAAGCACATATCCAAAAT+TGG - chr3_1:78714894-78714913 None:intergenic 30.0%
!!! ATTTTATTTGAAGAGCATCC+AGG - chr3_1:78715149-78715168 None:intergenic 30.0%
TTTACACTTCTTAACAGATG+AGG + chr3_1:78715168-78715187 Msa0378010:intron 30.0%
TTAACAGATGAGGTTTAGTT+TGG + chr3_1:78715178-78715197 Msa0378010:intron 30.0%
GCAAAGCAATATACTAAATC+TGG + chr3_1:78715315-78715334 Msa0378010:CDS 30.0%
TGATTTCACAGACAAAATGT+GGG - chr3_1:78715457-78715476 None:intergenic 30.0%
ATGATTTCACAGACAAAATG+TGG - chr3_1:78715458-78715477 None:intergenic 30.0%
GTCTGTGAAATCATTATATG+AGG + chr3_1:78715464-78715483 Msa0378010:intron 30.0%
! ACAAACAAAAAGCACATTTC+TGG - chr3_1:78715558-78715577 None:intergenic 30.0%
TTTATCTGAAGAGCCATAAT+TGG - chr3_1:78715804-78715823 None:intergenic 30.0%
AATTGGACTTCGTGAATAAT+AGG + chr3_1:78715894-78715913 Msa0378010:intron 30.0%
ATTTAATGATGCATACACCA+CGG + chr3_1:78715917-78715936 Msa0378010:intron 30.0%
! TAGTAGGAACTTTAAAGAGA+AGG - chr3_1:78716114-78716133 None:intergenic 30.0%
!! CTTTAAAGTTCCTACTAGTT+TGG + chr3_1:78716117-78716136 Msa0378010:CDS 30.0%
! AACTCTGCTAGCATTTTATT+TGG + chr3_1:78716142-78716161 Msa0378010:CDS 30.0%
ACAAGTTTGTGTTACATTCT+TGG + chr3_1:78716228-78716247 Msa0378010:intron 30.0%
! TAAGGAATTTTTCTGATCTG+TGG + chr3_1:78716351-78716370 Msa0378010:three_prime_UTR 30.0%
AAATTGTCAAGTGATACATG+AGG - chr3_1:78716653-78716672 None:intergenic 30.0%
!! AAGAAGAAGCACATGAGTTT+TGG + chr3_1:78711544-78711563 Msa0378010:five_prime_UTR 35.0%
!! GGGGTTCTGAATTTGAAAAA+AGG - chr3_1:78711643-78711662 None:intergenic 35.0%
!! AACCCCTTTTGTTTCTTTCT+GGG + chr3_1:78711657-78711676 Msa0378010:five_prime_UTR 35.0%
AACCCAGAAAGAAACAAAAG+GGG - chr3_1:78711662-78711681 None:intergenic 35.0%
GAACCCAGAAAGAAACAAAA+GGG - chr3_1:78711663-78711682 None:intergenic 35.0%
TGAACCCAGAAAGAAACAAA+AGG - chr3_1:78711664-78711683 None:intergenic 35.0%
TCCTCGATCATAAACAAACA+AGG + chr3_1:78711770-78711789 Msa0378010:five_prime_UTR 35.0%
TGAAGAAAAAGGGAAGTTGT+TGG + chr3_1:78711969-78711988 Msa0378010:CDS 35.0%
AAAGAAAGAGGTTCCAGAAA+TGG + chr3_1:78712000-78712019 Msa0378010:CDS 35.0%
TAATGCTGGAATATCCTTGA+TGG + chr3_1:78712134-78712153 Msa0378010:CDS 35.0%
!! AATATCCTTGATGGTGTATC+AGG + chr3_1:78712143-78712162 Msa0378010:CDS 35.0%
AATTACCTGATACACCATCA+AGG - chr3_1:78712151-78712170 None:intergenic 35.0%
TTAGGTCCTGTTTGGATAAA+TGG + chr3_1:78712212-78712231 Msa0378010:intron 35.0%
GTGGATGCAGAATTTCATTT+CGG + chr3_1:78712455-78712474 Msa0378010:intron 35.0%
TTTCAACTGAACCACTAACA+TGG + chr3_1:78712514-78712533 Msa0378010:CDS 35.0%
TTAATCAACCTCCATGTTAG+TGG - chr3_1:78712528-78712547 None:intergenic 35.0%
! GTTGATTAAAGTCTGGTTTC+CGG + chr3_1:78712539-78712558 Msa0378010:CDS 35.0%
CCGGTCAATGTTATATTTGT+TGG + chr3_1:78712558-78712577 Msa0378010:CDS 35.0%
ATGTCAATCATCTTCCAAAG+GGG + chr3_1:78712663-78712682 Msa0378010:intron 35.0%
ACATGTTCATAAGCTGTGTT+TGG + chr3_1:78712842-78712861 Msa0378010:intron 35.0%
GTGGAGATAACACACAATTT+CGG + chr3_1:78713053-78713072 Msa0378010:intron 35.0%
ATAACACACAATTTCGGAAG+TGG + chr3_1:78713059-78713078 Msa0378010:intron 35.0%
! TGATGTATTTTGTGACAGAG+AGG + chr3_1:78713377-78713396 Msa0378010:intron 35.0%
! AGAGTATTACAGTAGAAGAG+TGG + chr3_1:78713510-78713529 Msa0378010:intron 35.0%
GAGTATTACAGTAGAAGAGT+GGG + chr3_1:78713511-78713530 Msa0378010:intron 35.0%
AATGATAAGAGTCTCAGCTT+CGG + chr3_1:78713590-78713609 Msa0378010:intron 35.0%
TTTGATTAATGTCCCCATCA+TGG + chr3_1:78713803-78713822 Msa0378010:intron 35.0%
GAACAAGTACATTTCACCAA+CGG - chr3_1:78714356-78714375 None:intergenic 35.0%
ATTATTCCACATCAAAGTGG+GGG - chr3_1:78714473-78714492 None:intergenic 35.0%
CATTATTCCACATCAAAGTG+GGG - chr3_1:78714474-78714493 None:intergenic 35.0%
AATGATGGCTGAAGTTGAAT+TGG + chr3_1:78714644-78714663 Msa0378010:intron 35.0%
ATATAGTTGCGAGACAGTTA+CGG + chr3_1:78714728-78714747 Msa0378010:intron 35.0%
TTGATGTTTGGGAATACTCA+GGG + chr3_1:78714751-78714770 Msa0378010:intron 35.0%
! ACATATCCAAAATTGGTGCT+TGG - chr3_1:78714887-78714906 None:intergenic 35.0%
GAAATGATCTGCAAGTGAAA+GGG - chr3_1:78714959-78714978 None:intergenic 35.0%
TGAAATGATCTGCAAGTGAA+AGG - chr3_1:78714960-78714979 None:intergenic 35.0%
CAGATCATTTCAGCAATAAC+TGG + chr3_1:78714968-78714987 Msa0378010:intron 35.0%
ATCATTTCAGCAATAACTGG+AGG + chr3_1:78714971-78714990 Msa0378010:CDS 35.0%
TCATTTCAGCAATAACTGGA+GGG + chr3_1:78714972-78714991 Msa0378010:CDS 35.0%
! GATCTCTCTTTTAATGCAAC+TGG + chr3_1:78715001-78715020 Msa0378010:CDS 35.0%
AACACTCTTTCTTTGCCTTT+GGG + chr3_1:78715372-78715391 Msa0378010:CDS 35.0%
CACGTAGTTAAAGATGACAT+AGG - chr3_1:78715498-78715517 None:intergenic 35.0%
!!! TTCTGAGATTACCTAGCTTT+TGG + chr3_1:78715674-78715693 Msa0378010:CDS 35.0%
TGTTTGATGAAGAAACCACA+TGG - chr3_1:78715749-78715768 None:intergenic 35.0%
ATGTGGTTTCTTCATCAAAC+AGG + chr3_1:78715748-78715767 Msa0378010:CDS 35.0%
TGTGGTTTCTTCATCAAACA+GGG + chr3_1:78715749-78715768 Msa0378010:CDS 35.0%
GTGGTCAGAAATTCCAATTA+TGG + chr3_1:78715788-78715807 Msa0378010:intron 35.0%
AAGGTAGAAATGCAAATTGC+AGG + chr3_1:78716261-78716280 Msa0378010:intron 35.0%
AGGTAGAAATGCAAATTGCA+GGG + chr3_1:78716262-78716281 Msa0378010:intron 35.0%
AATTCCTTATACTGCTCTTC+AGG - chr3_1:78716340-78716359 None:intergenic 35.0%
! GATCTGTGGTATTTGATTTC+CGG + chr3_1:78716365-78716384 Msa0378010:three_prime_UTR 35.0%
! ATCTGTGGTATTTGATTTCC+GGG + chr3_1:78716366-78716385 Msa0378010:three_prime_UTR 35.0%
TGAAGTTAGAAGTTCAACCT+GGG + chr3_1:78716390-78716409 Msa0378010:three_prime_UTR 35.0%
CGTCAAAGAGATGATTGTAT+CGG + chr3_1:78716425-78716444 Msa0378010:three_prime_UTR 35.0%
ACAAATCACACCTCTCTAAA+GGG - chr3_1:78716464-78716483 None:intergenic 35.0%
AGTTCATGATTACTTCTCTG+AGG + chr3_1:78716487-78716506 Msa0378010:three_prime_UTR 35.0%
GTTCATGATTACTTCTCTGA+GGG + chr3_1:78716488-78716507 Msa0378010:three_prime_UTR 35.0%
AATTAGATCCAAACGAACAG+GGG - chr3_1:78716525-78716544 None:intergenic 35.0%
GAATTAGATCCAAACGAACA+GGG - chr3_1:78716526-78716545 None:intergenic 35.0%
CTGTTCGTTTGGATCTAATT+CGG + chr3_1:78716525-78716544 Msa0378010:three_prime_UTR 35.0%
TGTTCGTTTGGATCTAATTC+GGG + chr3_1:78716526-78716545 Msa0378010:three_prime_UTR 35.0%
ATATGTTGCATCTTGAGACA+AGG + chr3_1:78716713-78716732 Msa0378010:three_prime_UTR 35.0%
TATGTTGCATCTTGAGACAA+GGG + chr3_1:78716714-78716733 Msa0378010:three_prime_UTR 35.0%
!! GAACCCCTTTTGTTTCTTTC+TGG + chr3_1:78711656-78711675 Msa0378010:five_prime_UTR 40.0%
!! GCCTTGTTTGTTTATGATCG+AGG - chr3_1:78711774-78711793 None:intergenic 40.0%
AAAGAGGTTCCAGAAATGGA+AGG + chr3_1:78712004-78712023 Msa0378010:CDS 40.0%
AAGAGGTTCCAGAAATGGAA+GGG + chr3_1:78712005-78712024 Msa0378010:CDS 40.0%
AACAACAACCCTTCCATTTC+TGG - chr3_1:78712016-78712035 None:intergenic 40.0%
GCTTATTGTCTTTCCTCTTG+TGG + chr3_1:78712069-78712088 Msa0378010:CDS 40.0%
TCTCTAACTTAGGTCCTGTT+TGG + chr3_1:78712204-78712223 Msa0378010:intron 40.0%
! AGCTGCTTTCGTAAGTTATC+TGG + chr3_1:78712328-78712347 Msa0378010:intron 40.0%
! GCTGCTTTCGTAAGTTATCT+GGG + chr3_1:78712329-78712348 Msa0378010:intron 40.0%
TACAGATCTAAGGACCTGAT+TGG - chr3_1:78712402-78712421 None:intergenic 40.0%
TGTATCTATGTTGAGCCTTC+TGG + chr3_1:78712485-78712504 Msa0378010:CDS 40.0%
GTATCTATGTTGAGCCTTCT+GGG + chr3_1:78712486-78712505 Msa0378010:CDS 40.0%
CAGTTGAAACTAAACCCAGA+AGG - chr3_1:78712503-78712522 None:intergenic 40.0%
! CATGGAGGTTGATTAAAGTC+TGG + chr3_1:78712532-78712551 Msa0378010:CDS 40.0%
! AAAGTGAAGCACCTGTAAGA+TGG + chr3_1:78713638-78713657 Msa0378010:intron 40.0%
! AAGTGAAGCACCTGTAAGAT+GGG + chr3_1:78713639-78713658 Msa0378010:intron 40.0%
CTATTGAACATGCTCCAACT+AGG - chr3_1:78713668-78713687 None:intergenic 40.0%
TTAGAGATAAAAGGAGGCCA+AGG + chr3_1:78713688-78713707 Msa0378010:intron 40.0%
! CCATATTAATGGTTTGGCCA+TGG - chr3_1:78713725-78713744 None:intergenic 40.0%
CCATGGCCAAACCATTAATA+TGG + chr3_1:78713722-78713741 Msa0378010:intron 40.0%
AATGTCCCCATCATGGAAAA+TGG + chr3_1:78713810-78713829 Msa0378010:intron 40.0%
!! CAAAGCCATTTTCCATGATG+GGG - chr3_1:78713818-78713837 None:intergenic 40.0%
!! CCAAAGCCATTTTCCATGAT+GGG - chr3_1:78713819-78713838 None:intergenic 40.0%
!! ACCAAAGCCATTTTCCATGA+TGG - chr3_1:78713820-78713839 None:intergenic 40.0%
CTTTATGCTGATATTCGTCC+AGG + chr3_1:78714080-78714099 Msa0378010:intron 40.0%
TTGCTTACATCTCCTACAAC+CGG + chr3_1:78714531-78714550 Msa0378010:intron 40.0%
! AGACAGTTACGGTTGATGTT+TGG + chr3_1:78714739-78714758 Msa0378010:intron 40.0%
! GACAGTTACGGTTGATGTTT+GGG + chr3_1:78714740-78714759 Msa0378010:intron 40.0%
GTTGATGTTTGGGAATACTC+AGG + chr3_1:78714750-78714769 Msa0378010:intron 40.0%
! CTTGAACCAAGCACCAATTT+TGG + chr3_1:78714878-78714897 Msa0378010:intron 40.0%
TTAATGCAACTGGCTATGTG+TGG + chr3_1:78715011-78715030 Msa0378010:CDS 40.0%
!! AGTTGAGTGTGCTGATTAGT+TGG + chr3_1:78715243-78715262 Msa0378010:intron 40.0%
CAACACTCTTTCTTTGCCTT+TGG + chr3_1:78715371-78715390 Msa0378010:CDS 40.0%
AGCATCAGGAAAATTCCCAA+AGG - chr3_1:78715390-78715409 None:intergenic 40.0%
CCTCATTGAAAACAAGCATC+AGG - chr3_1:78715404-78715423 None:intergenic 40.0%
!! CCTGATGCTTGTTTTCAATG+AGG + chr3_1:78715401-78715420 Msa0378010:CDS 40.0%
AAGCTAGGTAATCTCAGAAG+TGG - chr3_1:78715673-78715692 None:intergenic 40.0%
GTCATCACTAACCAAAAGCT+AGG - chr3_1:78715688-78715707 None:intergenic 40.0%
! ATGACCTTCAGTGGAGTTTT+GGG + chr3_1:78715703-78715722 Msa0378010:CDS 40.0%
TTGATGAAGAAACCACATGG+AGG - chr3_1:78715746-78715765 None:intergenic 40.0%
GTGGTTTCTTCATCAAACAG+GGG + chr3_1:78715750-78715769 Msa0378010:CDS 40.0%
!! TTTGACTTGAGTTAGAACCG+TGG - chr3_1:78715937-78715956 None:intergenic 40.0%
GCAGATGGCAAACTAGTTAT+TGG - chr3_1:78716044-78716063 None:intergenic 40.0%
! AATGCAAATTGCAGGGCTTT+TGG + chr3_1:78716269-78716288 Msa0378010:intron 40.0%
! TTTTCGCTAGAGCCAAAATC+CGG + chr3_1:78716301-78716320 Msa0378010:CDS 40.0%
CAATCCTGAAGAGCAGTATA+AGG + chr3_1:78716333-78716352 Msa0378010:exon 40.0%
! TCTGTGGTATTTGATTTCCG+GGG + chr3_1:78716367-78716386 Msa0378010:three_prime_UTR 40.0%
TTGAACTTCTAACTTCACCC+CGG - chr3_1:78716387-78716406 None:intergenic 40.0%
GTGAAGTTAGAAGTTCAACC+TGG + chr3_1:78716389-78716408 Msa0378010:three_prime_UTR 40.0%
! AAGTTCAACCTGGGATTTTG+AGG + chr3_1:78716399-78716418 Msa0378010:three_prime_UTR 40.0%
! AACTATCTCACCCTTTAGAG+AGG + chr3_1:78716451-78716470 Msa0378010:three_prime_UTR 40.0%
CACAAATCACACCTCTCTAA+AGG - chr3_1:78716465-78716484 None:intergenic 40.0%
!! CTTCTCTGAGGGATAGTTTT+TGG + chr3_1:78716499-78716518 Msa0378010:three_prime_UTR 40.0%
CGAATTAGATCCAAACGAAC+AGG - chr3_1:78716527-78716546 None:intergenic 40.0%
TTGGATTGCATTGCTAGCAA+TGG + chr3_1:78716558-78716577 Msa0378010:three_prime_UTR 40.0%
! AGGGTCACATTTTCATGTGA+AGG + chr3_1:78716733-78716752 Msa0378010:three_prime_UTR 40.0%
TCGAGGAGAAAAACCCATGA+AGG - chr3_1:78711757-78711776 None:intergenic 45.0%
CATCGTACTACACTCAACAC+AGG + chr3_1:78711844-78711863 Msa0378010:five_prime_UTR 45.0%
CAACTGAACCACTAACATGG+AGG + chr3_1:78712517-78712536 Msa0378010:CDS 45.0%
TCATCTTCCAAAGGGGATGA+TGG + chr3_1:78712670-78712689 Msa0378010:intron 45.0%
! GGAGGCAGATAATTTGTGAC+TGG + chr3_1:78712691-78712710 Msa0378010:intron 45.0%
AACTAGGCTACCCATCTTAC+AGG - chr3_1:78713652-78713671 None:intergenic 45.0%
TGTAAGATGGGTAGCCTAGT+TGG + chr3_1:78713651-78713670 Msa0378010:intron 45.0%
CCCATCATGGAAAATGGCTT+TGG + chr3_1:78713816-78713835 Msa0378010:intron 45.0%
CTTGTGTGCTCCCCAAAAAT+AGG - chr3_1:78714116-78714135 None:intergenic 45.0%
!! ACACAAGCTCTGAACTCTTG+AGG + chr3_1:78714129-78714148 Msa0378010:intron 45.0%
ACGAATGTCATAACTGCCGT+TGG + chr3_1:78714337-78714356 Msa0378010:CDS 45.0%
TTGTTCAGTAAGCACCACGA+AGG + chr3_1:78714370-78714389 Msa0378010:CDS 45.0%
!! CTGGGCTGCTCTATTTCTAA+TGG + chr3_1:78714399-78714418 Msa0378010:CDS 45.0%
!! CAAAGTGGGGGTATCAAACA+CGG - chr3_1:78714461-78714480 None:intergenic 45.0%
TTGATACCCCCACTTTGATG+TGG + chr3_1:78714464-78714483 Msa0378010:intron 45.0%
GTATATGTTGGCAACAGCAC+CGG - chr3_1:78714553-78714572 None:intergenic 45.0%
TTTCCAAAGGTCGAATACCG+TGG + chr3_1:78714586-78714605 Msa0378010:intron 45.0%
TTCCAAAGGTCGAATACCGT+GGG + chr3_1:78714587-78714606 Msa0378010:intron 45.0%
CTTACCATTCTGTTACTGCC+TGG + chr3_1:78715128-78715147 Msa0378010:intron 45.0%
TGGTTAGTGATGACCTTCAG+TGG + chr3_1:78715694-78715713 Msa0378010:CDS 45.0%
! GATGACCTTCAGTGGAGTTT+TGG + chr3_1:78715702-78715721 Msa0378010:CDS 45.0%
TAGACCCAAAACTCCACTGA+AGG - chr3_1:78715710-78715729 None:intergenic 45.0%
! CAATTAGCTTCACCTCCATG+TGG + chr3_1:78715731-78715750 Msa0378010:CDS 45.0%
AAACAGGGGCTACAACTTAC+AGG + chr3_1:78715764-78715783 Msa0378010:CDS 45.0%
! TTTGCCATCTGCAGTCTTGT+AGG + chr3_1:78716052-78716071 Msa0378010:intron 45.0%
AAGATACCACTCTCAGTTGC+TGG + chr3_1:78716085-78716104 Msa0378010:CDS 45.0%
GCAGAGTTCTCCAAACTAGT+AGG - chr3_1:78716130-78716149 None:intergenic 45.0%
CATTCTTGGTTCAACGCTGA+AGG + chr3_1:78716242-78716261 Msa0378010:intron 45.0%
TTTCGCTAGAGCCAAAATCC+GGG + chr3_1:78716302-78716321 Msa0378010:CDS 45.0%
! TTGAGATCTCTCCCGGATTT+TGG - chr3_1:78716316-78716335 None:intergenic 45.0%
TTCAGGATTGAGATCTCTCC+CGG - chr3_1:78716323-78716342 None:intergenic 45.0%
CTAATTCGGGAAGAGTTGCT+TGG + chr3_1:78716539-78716558 Msa0378010:three_prime_UTR 45.0%
GATTGCATTGCTAGCAATGG+AGG + chr3_1:78716561-78716580 Msa0378010:three_prime_UTR 45.0%
!! AACATAAAAAAAAAAAAAAA+AGG - chr3_1:78716603-78716622 None:intergenic 5.0%
CGTACTACACTCAACACAGG+CGG + chr3_1:78711847-78711866 Msa0378010:five_prime_UTR 50.0%
! AATTGCGCCGCTTTGAATCG+CGG - chr3_1:78711903-78711922 None:intergenic 50.0%
! TCTTCCAAAGGGGATGATGG+AGG + chr3_1:78712673-78712692 Msa0378010:intron 50.0%
AGGAGGCCAAGGAAAACTAG+AGG + chr3_1:78713699-78713718 Msa0378010:intron 50.0%
!!! CCATGGCCTCTAGTTTTCCT+TGG - chr3_1:78713708-78713727 None:intergenic 50.0%
CCAAGGAAAACTAGAGGCCA+TGG + chr3_1:78713705-78713724 Msa0378010:intron 50.0%
TTCCCACGGTATTCGACCTT+TGG - chr3_1:78714592-78714611 None:intergenic 50.0%
GCATCCAGGCAGTAACAGAA+TGG - chr3_1:78715135-78715154 None:intergenic 50.0%
TATTGCAGCTGACCCTACGA+AGG + chr3_1:78715280-78715299 Msa0378010:intron 50.0%
ATTGCAGCTGACCCTACGAA+GGG + chr3_1:78715281-78715300 Msa0378010:intron 50.0%
CGTATCCATGACCCTTCGTA+GGG - chr3_1:78715295-78715314 None:intergenic 50.0%
CCTACGAAGGGTCATGGATA+CGG + chr3_1:78715293-78715312 Msa0378010:CDS 50.0%
CGAACCTACAAGACTGCAGA+TGG - chr3_1:78716059-78716078 None:intergenic 50.0%
! GCAAATTGCAGGGCTTTTGG+CGG + chr3_1:78716272-78716291 Msa0378010:intron 50.0%
! CAAATTGCAGGGCTTTTGGC+GGG + chr3_1:78716273-78716292 Msa0378010:intron 50.0%
TGACGACACCTCAAAATCCC+AGG - chr3_1:78716410-78716429 None:intergenic 50.0%
!!! GTTTTTGGCCCCTGTTCGTT+TGG + chr3_1:78716514-78716533 Msa0378010:three_prime_UTR 50.0%
TCTGCCTCCATCATCCCCTT+TGG - chr3_1:78712680-78712699 None:intergenic 55.0%
!! TTGGCAACAGCACCGGTTGT+AGG - chr3_1:78714546-78714565 None:intergenic 55.0%
CCGTATCCATGACCCTTCGT+AGG - chr3_1:78715296-78715315 None:intergenic 55.0%
GGGGCTACAACTTACAGGTG+TGG + chr3_1:78715769-78715788 Msa0378010:intron 55.0%
AGGATGCCAGCAACTGAGAG+TGG - chr3_1:78716094-78716113 None:intergenic 55.0%
ACACTCAACACAGGCGGAGC+TGG + chr3_1:78711853-78711872 Msa0378010:five_prime_UTR 60.0%
AGCACCACGAAGGCAGAGTC+TGG + chr3_1:78714380-78714399 Msa0378010:CDS 60.0%
GCACCACGAAGGCAGAGTCT+GGG + chr3_1:78714381-78714400 Msa0378010:CDS 60.0%
GCTGACCCTACGAAGGGTCA+TGG + chr3_1:78715287-78715306 Msa0378010:intron 60.0%
CTCAACACAGGCGGAGCTGG+TGG + chr3_1:78711856-78711875 Msa0378010:five_prime_UTR 65.0%
ACACAGGCGGAGCTGGTGGT+CGG + chr3_1:78711860-78711879 Msa0378010:five_prime_UTR 65.0%
! CGCTTTGAATCGCGGTGGCG+CGG - chr3_1:78711895-78711914 None:intergenic 65.0%
CGCGCCACCGCGATTCAAAG+CGG + chr3_1:78711893-78711912 Msa0378010:five_prime_UTR 65.0%
! TGCGCCGCTTTGAATCGCGG+TGG - chr3_1:78711900-78711919 None:intergenic 65.0%
CAGCCCAGACTCTGCCTTCG+TGG - chr3_1:78714387-78714406 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 78711419 78716834 78711419 ID=Msa0378010;Name=Msa0378010
chr3_1 mRNA 78711419 78716834 78711419 ID=Msa0378010-mRNA-1;Parent=Msa0378010;Name=Msa0378010-mRNA-1;_AED=0.07;_eAED=0.07;_QI=515|1|1|1|1|1|8|493|342
chr3_1 exon 78711419 78712164 78711419 ID=Msa0378010-mRNA-1:exon:19067;Parent=Msa0378010-mRNA-1
chr3_1 exon 78712465 78712604 78712465 ID=Msa0378010-mRNA-1:exon:19068;Parent=Msa0378010-mRNA-1
chr3_1 exon 78714291 78714420 78714291 ID=Msa0378010-mRNA-1:exon:19069;Parent=Msa0378010-mRNA-1
chr3_1 exon 78714971 78715069 78714971 ID=Msa0378010-mRNA-1:exon:19070;Parent=Msa0378010-mRNA-1
chr3_1 exon 78715288 78715442 78715288 ID=Msa0378010-mRNA-1:exon:19071;Parent=Msa0378010-mRNA-1
chr3_1 exon 78715669 78715785 78715669 ID=Msa0378010-mRNA-1:exon:19072;Parent=Msa0378010-mRNA-1
chr3_1 exon 78716066 78716163 78716066 ID=Msa0378010-mRNA-1:exon:19073;Parent=Msa0378010-mRNA-1
chr3_1 exon 78716283 78716834 78716283 ID=Msa0378010-mRNA-1:exon:19074;Parent=Msa0378010-mRNA-1
chr3_1 five_prime_UTR 78711419 78711933 78711419 ID=Msa0378010-mRNA-1:five_prime_utr;Parent=Msa0378010-mRNA-1
chr3_1 CDS 78711934 78712164 78711934 ID=Msa0378010-mRNA-1:cds;Parent=Msa0378010-mRNA-1
chr3_1 CDS 78712465 78712604 78712465 ID=Msa0378010-mRNA-1:cds;Parent=Msa0378010-mRNA-1
chr3_1 CDS 78714291 78714420 78714291 ID=Msa0378010-mRNA-1:cds;Parent=Msa0378010-mRNA-1
chr3_1 CDS 78714971 78715069 78714971 ID=Msa0378010-mRNA-1:cds;Parent=Msa0378010-mRNA-1
chr3_1 CDS 78715288 78715442 78715288 ID=Msa0378010-mRNA-1:cds;Parent=Msa0378010-mRNA-1
chr3_1 CDS 78715669 78715785 78715669 ID=Msa0378010-mRNA-1:cds;Parent=Msa0378010-mRNA-1
chr3_1 CDS 78716066 78716163 78716066 ID=Msa0378010-mRNA-1:cds;Parent=Msa0378010-mRNA-1
chr3_1 CDS 78716283 78716341 78716283 ID=Msa0378010-mRNA-1:cds;Parent=Msa0378010-mRNA-1
chr3_1 three_prime_UTR 78716342 78716834 78716342 ID=Msa0378010-mRNA-1:three_prime_utr;Parent=Msa0378010-mRNA-1
Gene Sequence

>Msa0378010

ATGAAAATGAAGTCTTCTTCGGATGATGAACATGATGAAGAAAAAGGGAAGTTGTTGGAAAAAAGCAAAGAAAGAGGTTCCAGAAATGGAAGGGTTGTTGTTAAAGTTCATAATCAAGCCTTATTATCTGGACTTGCTTATTGTCTTTCCTCTTGTGGAATGATTTTAGTTAACAAATTTGTACTTTCTAGTTATGATTTTAATGCTGGAATATCCTTGATGGTGTATCAGAATTTCATTTCGGTGATCATTGTATCTATGTTGAGCCTTCTGGGTTTAGTTTCAACTGAACCACTAACATGGAGGTTGATTAAAGTCTGGTTTCCGGTCAATGTTATATTTGTTGGAATGCTAATTACAAGCATGTTTAGTTTGAAATACATTAATGTGGCTATGGTGACAGTCTTGAAGAATGTTACGAATGTCATAACTGCCGTTGGTGAAATGTACTTGTTCAGTAAGCACCACGAAGGCAGAGTCTGGGCTGCTCTATTTCTAATGATCATTTCAGCAATAACTGGAGGGATTACTGATCTCTCTTTTAATGCAACTGGCTATGTGTGGCAGACACTAAATTGTTTCTTAACTGCATCATATTCTCTGACCCTACGAAGGGTCATGGATACGGCAAAGCAATATACTAAATCTGGAAATTTAAATGAGTTTACGATGGTCTTGTTGAACAACACTCTTTCTTTGCCTTTGGGAATTTTCCTGATGCTTGTTTTCAATGAGGTTGATTATCTCTTAAGAACGCCACTTCTGAGATTACCTAGCTTTTGGTTAGTGATGACCTTCAGTGGAGTTTTGGGTCTAGCAATTAGCTTCACCTCCATGTGGTTTCTTCATCAAACAGGGGCTACAACTTACAGTCTTGTAGGTTCGCTGAATAAGATACCACTCTCAGTTGCTGGCATCCTTCTCTTTAAAGTTCCTACTAGTTTGGAGAACTCTGCTAGCATTTTATTTGGGCTTTTGGCGGGAGTACTTTTCGCTAGAGCCAAAATCCGGGAGAGATCTCAATCCTGA

Protein sequence

>Msa0378010

MKMKSSSDDEHDEEKGKLLEKSKERGSRNGRVVVKVHNQALLSGLAYCLSSCGMILVNKFVLSSYDFNAGISLMVYQNFISVIIVSMLSLLGLVSTEPLTWRLIKVWFPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFSKHHEGRVWAALFLMIISAITGGITDLSFNATGYVWQTLNCFLTASYSLTLRRVMDTAKQYTKSGNLNEFTMVLLNNTLSLPLGIFLMLVFNEVDYLLRTPLLRLPSFWLVMTFSGVLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASILFGLLAGVLFARAKIRERSQS*