Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563260 | XP_013446535.1 | 88.088 | 319 | 3 | 1 | 1 | 284 | 1 | 319 | 0.0 | 553 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563260 | sp|Q93Y16|DEAH4_ARATH | 73.292 | 322 | 48 | 2 | 1 | 284 | 1 | 322 | 6.13e-166 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563260 | A0A072TT13 | 88.088 | 319 | 3 | 1 | 1 | 284 | 1 | 319 | 0.0 | 553 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013050 | Msa0563260 | 0.850657 | 1.473362e-60 | -8.615850e-47 |
| Msa0074950 | Msa0563260 | 0.833429 | 5.359814e-56 | -8.615850e-47 |
| Msa0129790 | Msa0563260 | 0.806481 | 8.057167e-50 | -8.615850e-47 |
| Msa0148120 | Msa0563260 | -0.806929 | 6.479848e-50 | -8.615850e-47 |
| Msa0156650 | Msa0563260 | 0.805312 | 1.418641e-49 | -8.615850e-47 |
| Msa0162770 | Msa0563260 | 0.856734 | 2.632693e-62 | -8.615850e-47 |
| Msa0169140 | Msa0563260 | 0.812157 | 4.882620e-51 | -8.615850e-47 |
| Msa0229490 | Msa0563260 | 0.801100 | 1.055750e-48 | -8.615850e-47 |
| Msa0386040 | Msa0563260 | -0.802268 | 6.081733e-49 | -8.615850e-47 |
| Msa0421780 | Msa0563260 | 0.821684 | 3.543082e-53 | -8.615850e-47 |
| Msa0259860 | Msa0563260 | 0.812350 | 4.431970e-51 | -8.615850e-47 |
| Msa0553220 | Msa0563260 | 0.832739 | 7.959603e-56 | -8.615850e-47 |
| Msa0563260 | Msa0586520 | 0.825469 | 4.607677e-54 | -8.615850e-47 |
| Msa0563260 | Msa0607340 | 0.844650 | 6.630262e-59 | -8.615850e-47 |
| Msa0563260 | Msa0647450 | 0.816138 | 6.453209e-52 | -8.615850e-47 |
| Msa0563260 | Msa0661190 | 0.835905 | 1.277823e-56 | -8.615850e-47 |
| Msa0563260 | Msa0867050 | 0.821083 | 4.875601e-53 | -8.615850e-47 |
| Msa0563260 | Msa0899240 | 0.820299 | 7.379764e-53 | -8.615850e-47 |
| Msa0563260 | Msa0930460 | 0.801969 | 7.005185e-49 | -8.615850e-47 |
| Msa0563260 | Msa1069660 | 0.810895 | 9.180900e-51 | -8.615850e-47 |
| Msa0563260 | Msa1072460 | 0.800899 | 1.160762e-48 | -8.615850e-47 |
| Msa0563260 | Msa1079370 | 0.809274 | 2.051687e-50 | -8.615850e-47 |
| Msa0563260 | Msa1166010 | -0.804245 | 2.369554e-49 | -8.615850e-47 |
| Msa0563260 | Msa1190890 | 0.815093 | 1.103063e-51 | -8.615850e-47 |
| Msa0563260 | Msa1191470 | 0.841495 | 4.590779e-58 | -8.615850e-47 |
| Msa0563260 | Msa1191890 | 0.830524 | 2.798342e-55 | -8.615850e-47 |
| Msa0563260 | Msa1201430 | 0.832604 | 8.596732e-56 | -8.615850e-47 |
| Msa0563260 | Msa1208890 | 0.819613 | 1.059383e-52 | -8.615850e-47 |
| Msa0563260 | Msa1227860 | 0.802751 | 4.834294e-49 | -8.615850e-47 |
| Msa0563260 | Msa1245940 | 0.825983 | 3.480105e-54 | -8.615850e-47 |
| Msa0563260 | Msa1249640 | 0.825005 | 5.934404e-54 | -8.615850e-47 |
| Msa0563260 | Msa1254370 | 0.846885 | 1.639268e-59 | -8.615850e-47 |
| Msa0563260 | Msa1259070 | 0.825305 | 5.041196e-54 | -8.615850e-47 |
| Msa0563260 | Msa1261680 | 0.804910 | 1.721645e-49 | -8.615850e-47 |
| Msa0563260 | Msa1270960 | 0.841016 | 6.134202e-58 | -8.615850e-47 |
| Msa0563260 | Msa1294610 | 0.860602 | 1.842195e-63 | -8.615850e-47 |
| Msa0563260 | Msa1308080 | 0.849209 | 3.745069e-60 | -8.615850e-47 |
| Msa0563260 | Msa1332040 | 0.809871 | 1.527151e-50 | -8.615850e-47 |
| Msa0563260 | Msa1365700 | 0.806219 | 9.149478e-50 | -8.615850e-47 |
| Msa0563260 | Msa1395230 | 0.816216 | 6.199041e-52 | -8.615850e-47 |
| Msa0563260 | Msa1400610 | 0.829779 | 4.251861e-55 | -8.615850e-47 |
| Msa0563260 | Msa1403930 | 0.837354 | 5.462714e-57 | -8.615850e-47 |
| Msa0563260 | Msa1410430 | 0.820697 | 5.979956e-53 | -8.615850e-47 |
| Msa0563260 | Msa1431560 | 0.810357 | 1.199841e-50 | -8.615850e-47 |
| Msa0563260 | Msa1453780 | 0.842055 | 3.265514e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563260 | MtrunA17_Chr8g0377111 | 88.088 | 319 | 3 | 1 | 1 | 284 | 1 | 319 | 0.0 | 553 |
| Msa0563260 | MtrunA17_Chr5g0432591 | 46.417 | 321 | 129 | 5 | 4 | 284 | 209 | 526 | 2.13e-90 | 280 |
| Msa0563260 | MtrunA17_Chr1g0156271 | 45.312 | 320 | 135 | 4 | 3 | 284 | 569 | 886 | 5.27e-87 | 282 |
| Msa0563260 | MtrunA17_Chr1g0211961 | 45.000 | 320 | 136 | 4 | 3 | 284 | 534 | 851 | 5.70e-87 | 281 |
| Msa0563260 | MtrunA17_Chr6g0476001 | 45.000 | 320 | 135 | 4 | 4 | 284 | 254 | 571 | 6.31e-87 | 270 |
| Msa0563260 | MtrunA17_Chr3g0086391 | 46.708 | 319 | 130 | 4 | 4 | 284 | 412 | 728 | 6.60e-87 | 280 |
| Msa0563260 | MtrunA17_Chr1g0194381 | 40.719 | 334 | 143 | 6 | 3 | 284 | 56 | 386 | 6.83e-77 | 247 |
| Msa0563260 | MtrunA17_Chr3g0100131 | 41.304 | 322 | 147 | 4 | 4 | 284 | 592 | 912 | 4.66e-76 | 251 |
| Msa0563260 | MtrunA17_Chr2g0329131 | 40.994 | 322 | 148 | 4 | 4 | 284 | 571 | 891 | 6.27e-76 | 251 |
| Msa0563260 | MtrunA17_Chr3g0099251 | 37.883 | 359 | 144 | 6 | 3 | 284 | 54 | 410 | 2.06e-72 | 235 |
| Msa0563260 | MtrunA17_Chr7g0259941 | 35.359 | 362 | 153 | 4 | 3 | 284 | 47 | 407 | 1.74e-69 | 228 |
| Msa0563260 | MtrunA17_Chr8g0359501 | 35.083 | 362 | 154 | 4 | 3 | 284 | 47 | 407 | 1.02e-68 | 226 |
| Msa0563260 | MtrunA17_Chr2g0283271 | 37.870 | 338 | 151 | 5 | 4 | 284 | 53 | 388 | 8.44e-68 | 223 |
| Msa0563260 | MtrunA17_Chr4g0044491 | 42.806 | 278 | 115 | 4 | 49 | 284 | 79 | 354 | 3.81e-67 | 221 |
| Msa0563260 | MtrunA17_Chr8g0354481 | 41.398 | 186 | 107 | 2 | 79 | 264 | 14 | 197 | 2.81e-46 | 154 |
| Msa0563260 | MtrunA17_Chr3g0082091 | 36.129 | 310 | 140 | 10 | 22 | 284 | 5 | 303 | 2.66e-41 | 152 |
| Msa0563260 | MtrunA17_Chr1g0164621 | 36.218 | 312 | 139 | 11 | 22 | 284 | 5 | 305 | 1.88e-40 | 149 |
| Msa0563260 | MtrunA17_Chr3g0123681 | 33.535 | 331 | 157 | 11 | 4 | 284 | 266 | 583 | 7.89e-40 | 147 |
| Msa0563260 | MtrunA17_Chr8g0359451 | 30.645 | 248 | 92 | 3 | 2 | 169 | 12 | 259 | 2.23e-35 | 128 |
| Msa0563260 | MtrunA17_Chr4g0010901 | 32.061 | 262 | 108 | 5 | 4 | 195 | 272 | 533 | 2.73e-34 | 131 |
| Msa0563260 | MtrunA17_Chr4g0010901 | 43.243 | 74 | 42 | 0 | 211 | 284 | 693 | 766 | 1.24e-11 | 65.1 |
| Msa0563260 | MtrunA17_Chr1g0208961 | 27.366 | 391 | 172 | 9 | 2 | 284 | 327 | 713 | 6.21e-34 | 130 |
| Msa0563260 | MtrunA17_Chr1g0195601 | 27.297 | 370 | 163 | 11 | 1 | 284 | 27 | 376 | 1.02e-27 | 112 |
| Msa0563260 | MtrunA17_Chr8g0354471 | 54.839 | 93 | 38 | 1 | 4 | 92 | 110 | 202 | 1.97e-27 | 105 |
| Msa0563260 | MtrunA17_Chr5g0442401 | 29.000 | 200 | 90 | 3 | 2 | 150 | 185 | 383 | 4.16e-23 | 99.0 |
| Msa0563260 | MtrunA17_Chr5g0442401 | 37.069 | 116 | 70 | 1 | 169 | 284 | 547 | 659 | 2.27e-19 | 88.2 |
| Msa0563260 | MtrunA17_Chr8g0392581 | 31.579 | 190 | 87 | 3 | 3 | 150 | 272 | 460 | 6.22e-23 | 98.6 |
| Msa0563260 | MtrunA17_Chr8g0392581 | 35.780 | 109 | 67 | 1 | 176 | 284 | 554 | 659 | 2.09e-13 | 70.5 |
| Msa0563260 | MtrunA17_Chr1g0177141 | 44.954 | 109 | 57 | 1 | 176 | 284 | 543 | 648 | 1.35e-22 | 97.4 |
| Msa0563260 | MtrunA17_Chr1g0177141 | 31.351 | 185 | 84 | 3 | 4 | 146 | 268 | 451 | 1.17e-21 | 94.7 |
| Msa0563260 | MtrunA17_Chr8g0355291 | 30.688 | 189 | 90 | 3 | 3 | 150 | 248 | 436 | 9.77e-21 | 92.0 |
| Msa0563260 | MtrunA17_Chr8g0355291 | 40.426 | 94 | 53 | 2 | 176 | 269 | 529 | 619 | 2.80e-14 | 73.2 |
| Msa0563260 | MtrunA17_Chr0c12g0493631 | 42.718 | 103 | 56 | 2 | 175 | 277 | 150 | 249 | 8.01e-18 | 83.6 |
| Msa0563260 | MtrunA17_Chr4g0077061 | 30.151 | 199 | 89 | 5 | 2 | 150 | 603 | 801 | 4.88e-17 | 81.3 |
| Msa0563260 | MtrunA17_Chr8g0355521 | 35.227 | 88 | 54 | 1 | 182 | 269 | 1 | 85 | 2.13e-12 | 62.8 |
| Msa0563260 | MtrunA17_Chr4g0067501 | 48.214 | 56 | 29 | 0 | 49 | 104 | 32 | 87 | 8.98e-12 | 60.1 |
| Msa0563260 | MtrunA17_Chr4g0067511 | 43.243 | 74 | 42 | 0 | 211 | 284 | 342 | 415 | 9.98e-12 | 65.5 |
| Msa0563260 | MtrunA17_Chr3g0100151 | 53.846 | 65 | 27 | 1 | 223 | 284 | 22 | 86 | 3.16e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563260 | AT1G27900.3 | 73.292 | 322 | 48 | 2 | 1 | 284 | 1 | 322 | 1.01e-168 | 478 |
| Msa0563260 | AT1G27900.2 | 73.292 | 322 | 48 | 2 | 1 | 284 | 1 | 322 | 2.09e-168 | 478 |
| Msa0563260 | AT1G27900.1 | 73.292 | 322 | 48 | 2 | 1 | 284 | 1 | 322 | 6.23e-167 | 479 |
| Msa0563260 | AT3G26560.1 | 45.312 | 320 | 135 | 4 | 3 | 284 | 514 | 831 | 6.47e-89 | 287 |
| Msa0563260 | AT1G32490.2 | 43.750 | 320 | 140 | 4 | 3 | 284 | 393 | 710 | 8.52e-85 | 274 |
| Msa0563260 | AT1G32490.1 | 43.750 | 320 | 140 | 4 | 3 | 284 | 403 | 720 | 1.17e-84 | 274 |
| Msa0563260 | AT2G35340.2 | 42.500 | 320 | 144 | 4 | 3 | 284 | 265 | 582 | 2.53e-83 | 268 |
| Msa0563260 | AT2G35340.1 | 42.500 | 320 | 144 | 4 | 3 | 284 | 403 | 720 | 8.06e-83 | 269 |
| Msa0563260 | AT5G13010.1 | 42.547 | 322 | 143 | 4 | 4 | 284 | 558 | 878 | 1.87e-79 | 261 |
| Msa0563260 | AT4G16680.1 | 44.688 | 320 | 135 | 5 | 4 | 284 | 215 | 531 | 2.41e-79 | 253 |
| Msa0563260 | AT4G16680.2 | 44.688 | 320 | 135 | 5 | 4 | 284 | 135 | 451 | 2.81e-78 | 253 |
| Msa0563260 | AT3G62310.3 | 40.719 | 334 | 143 | 6 | 3 | 284 | 60 | 390 | 6.27e-78 | 246 |
| Msa0563260 | AT3G62310.2 | 40.719 | 334 | 143 | 6 | 3 | 284 | 60 | 390 | 1.59e-77 | 246 |
| Msa0563260 | AT3G62310.1 | 40.719 | 334 | 143 | 6 | 3 | 284 | 60 | 390 | 4.39e-76 | 246 |
| Msa0563260 | AT2G47250.1 | 39.940 | 333 | 145 | 7 | 4 | 284 | 65 | 394 | 3.62e-74 | 241 |
| Msa0563260 | AT1G26370.1 | 37.190 | 363 | 144 | 5 | 3 | 284 | 40 | 399 | 1.28e-71 | 234 |
| Msa0563260 | AT4G18465.1 | 38.462 | 338 | 149 | 7 | 4 | 284 | 48 | 383 | 1.96e-66 | 219 |
| Msa0563260 | AT4G01020.1 | 34.545 | 330 | 154 | 8 | 4 | 284 | 303 | 619 | 1.30e-43 | 159 |
| Msa0563260 | AT5G10370.1 | 34.848 | 330 | 153 | 9 | 4 | 284 | 306 | 622 | 3.29e-43 | 157 |
| Msa0563260 | AT1G33390.2 | 31.111 | 270 | 115 | 7 | 4 | 202 | 241 | 510 | 2.92e-33 | 129 |
| Msa0563260 | AT1G33390.2 | 43.836 | 73 | 41 | 0 | 212 | 284 | 649 | 721 | 9.12e-12 | 65.9 |
| Msa0563260 | AT1G33390.1 | 31.111 | 270 | 115 | 7 | 4 | 202 | 241 | 510 | 2.92e-33 | 129 |
| Msa0563260 | AT1G33390.1 | 43.836 | 73 | 41 | 0 | 212 | 284 | 649 | 721 | 9.12e-12 | 65.9 |
| Msa0563260 | AT2G30800.1 | 31.250 | 192 | 89 | 2 | 2 | 150 | 185 | 376 | 5.46e-26 | 108 |
| Msa0563260 | AT2G30800.1 | 42.727 | 110 | 60 | 2 | 175 | 284 | 551 | 657 | 1.02e-20 | 92.4 |
| Msa0563260 | AT2G01130.1 | 34.946 | 186 | 78 | 3 | 3 | 146 | 219 | 403 | 3.23e-25 | 105 |
| Msa0563260 | AT2G01130.1 | 37.615 | 109 | 65 | 2 | 176 | 284 | 499 | 604 | 1.46e-12 | 68.2 |
| Msa0563260 | AT2G01130.2 | 34.946 | 186 | 78 | 3 | 3 | 146 | 154 | 338 | 3.41e-25 | 105 |
| Msa0563260 | AT2G01130.2 | 37.615 | 109 | 65 | 2 | 176 | 284 | 434 | 539 | 1.17e-12 | 68.6 |
| Msa0563260 | AT1G06670.2 | 31.771 | 192 | 88 | 4 | 2 | 150 | 215 | 406 | 1.28e-24 | 103 |
| Msa0563260 | AT1G06670.2 | 42.478 | 113 | 56 | 3 | 175 | 284 | 575 | 681 | 3.07e-19 | 88.2 |
| Msa0563260 | AT1G06670.1 | 31.771 | 192 | 88 | 4 | 2 | 150 | 215 | 406 | 1.32e-24 | 103 |
| Msa0563260 | AT1G06670.1 | 42.478 | 113 | 56 | 3 | 175 | 284 | 575 | 681 | 3.11e-19 | 88.2 |
| Msa0563260 | AT1G48650.1 | 32.632 | 190 | 85 | 3 | 3 | 150 | 298 | 486 | 4.78e-24 | 102 |
| Msa0563260 | AT1G48650.1 | 40.426 | 94 | 53 | 1 | 176 | 269 | 579 | 669 | 1.05e-15 | 77.8 |
| Msa0563260 | AT1G48650.2 | 32.632 | 190 | 85 | 3 | 3 | 150 | 298 | 486 | 5.57e-24 | 102 |
| Msa0563260 | AT1G48650.2 | 40.426 | 94 | 53 | 1 | 176 | 269 | 579 | 669 | 1.11e-15 | 77.8 |
| Msa0563260 | AT2G35920.3 | 31.383 | 188 | 88 | 3 | 4 | 150 | 260 | 447 | 6.45e-23 | 99.0 |
| Msa0563260 | AT2G35920.3 | 43.119 | 109 | 59 | 1 | 176 | 284 | 536 | 641 | 1.01e-20 | 92.4 |
| Msa0563260 | AT2G35920.2 | 31.383 | 188 | 88 | 3 | 4 | 150 | 170 | 357 | 7.26e-23 | 99.0 |
| Msa0563260 | AT2G35920.2 | 43.119 | 109 | 59 | 1 | 176 | 284 | 446 | 551 | 8.64e-21 | 92.8 |
| Msa0563260 | AT2G35920.1 | 31.383 | 188 | 88 | 3 | 4 | 150 | 228 | 415 | 7.59e-23 | 98.6 |
| Msa0563260 | AT2G35920.1 | 43.119 | 109 | 59 | 1 | 176 | 284 | 504 | 609 | 9.93e-21 | 92.4 |
| Msa0563260 | AT5G04895.1 | 30.159 | 189 | 91 | 3 | 3 | 150 | 259 | 447 | 6.70e-22 | 95.9 |
| Msa0563260 | AT5G04895.1 | 38.298 | 94 | 55 | 2 | 176 | 269 | 540 | 630 | 3.47e-13 | 70.1 |
| Msa0563260 | AT1G58060.1 | 30.986 | 213 | 88 | 6 | 3 | 159 | 613 | 822 | 7.79e-21 | 92.8 |
| Msa0563260 | AT1G58060.1 | 44.660 | 103 | 54 | 2 | 175 | 277 | 915 | 1014 | 7.15e-18 | 84.3 |
| Msa0563260 | AT2G30800.2 | 42.727 | 110 | 60 | 2 | 175 | 284 | 208 | 314 | 1.17e-20 | 92.4 |
| Msa0563260 | AT1G58050.1 | 41.818 | 110 | 61 | 2 | 175 | 284 | 882 | 988 | 6.29e-19 | 87.4 |
| Msa0563260 | AT2G47680.1 | 24.862 | 362 | 180 | 11 | 1 | 284 | 23 | 370 | 6.82e-17 | 81.3 |
Find 80 sgRNAs with CRISPR-Local
Find 446 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGTTGAGTGACGGCGATTT+TGG | 0.190346 | 4_1:+63575085 | None:intergenic |
| TTCTTTGCCACCTGAATTGC+AGG | 0.290325 | 4_1:-63573217 | Msa0563260:intron |
| AGAGAAGTTGGTATCGAAAA+TGG | 0.292258 | 4_1:-63573304 | Msa0563260:CDS |
| GAAACTTCTTTGACTGTTGA+TGG | 0.296524 | 4_1:-63572138 | Msa0563260:CDS |
| AAACTACTTACCTGCAATTC+AGG | 0.306522 | 4_1:+63573207 | None:intergenic |
| ACCGTCATCATCGGCGAAAC+TGG | 0.310099 | 4_1:-63575158 | Msa0563260:CDS |
| CGATAATCTTCTCTTCGTAT+TGG | 0.362901 | 4_1:+63575204 | None:intergenic |
| ATCACGTCTGCTACGCTTGA+TGG | 0.382982 | 4_1:-63574193 | Msa0563260:CDS |
| TTCTCTTCGTATTGGACAAT+GGG | 0.390504 | 4_1:+63575212 | None:intergenic |
| CGTGATCAACACTTTGAGAT+TGG | 0.400268 | 4_1:+63574210 | None:intergenic |
| TTGCTATAAAGAACCTCAAC+AGG | 0.421008 | 4_1:+63574109 | None:intergenic |
| AATATTAAAATATCCCCTTC+CGG | 0.429939 | 4_1:+63573467 | None:intergenic |
| AGGGAATACATCCTACTAGA+TGG | 0.438107 | 4_1:+63571318 | Msa0563250:intron |
| TCGGTAGCAAACACACTGTA+AGG | 0.438819 | 4_1:-63575375 | None:intergenic |
| AGAGAGTTGAGTGCTCTTAC+CGG | 0.447416 | 4_1:+63575133 | None:intergenic |
| TTTAATATTCATGACTGGAC+AGG | 0.450741 | 4_1:-63573453 | Msa0563260:intron |
| TGGTCTCAAAGAAGAAATAA+TGG | 0.459338 | 4_1:-63575243 | Msa0563260:exon |
| TGCCCGGTATTGAACATCCC+TGG | 0.463782 | 4_1:-63574142 | Msa0563260:CDS |
| AACTCCATCACCGTCATCAT+CGG | 0.470194 | 4_1:-63575167 | Msa0563260:CDS |
| TGTAGGTATGTTATTGACTC+TGG | 0.476404 | 4_1:-63571366 | Msa0563260:intron |
| AGATATACATACACGTCAAC+CGG | 0.479236 | 4_1:-63573486 | Msa0563260:CDS |
| GCTATAATCTTTCCTCTACA+TGG | 0.484437 | 4_1:-63573240 | Msa0563260:CDS |
| GATGGGGCTTATGAAACGTT+TGG | 0.490805 | 4_1:-63574248 | Msa0563260:CDS |
| ACAATGATTCGTCTGCAATT+CGG | 0.495527 | 4_1:+63572177 | None:intergenic |
| GCAGGATGACATAGAGAAGT+TGG | 0.496109 | 4_1:-63573316 | Msa0563260:intron |
| GTGTTCAGAGATATATTGAT+GGG | 0.500780 | 4_1:-63574265 | Msa0563260:intron |
| TGTGTTCAGAGATATATTGA+TGG | 0.502050 | 4_1:-63574266 | Msa0563260:intron |
| TTCCCAGGGATGTTCAATAC+CGG | 0.503076 | 4_1:+63574139 | None:intergenic |
| TCGCTGCCGTCTCCGTCTCT+AGG | 0.503761 | 4_1:-63575055 | Msa0563260:intron |
| CTTCTCTTCGTATTGGACAA+TGG | 0.506058 | 4_1:+63575211 | None:intergenic |
| TGCTAATTTGAACAACATCA+AGG | 0.516042 | 4_1:+63571298 | Msa0563250:intron |
| TGGGAAGTTGTATCCTGTTG+AGG | 0.516108 | 4_1:-63574122 | Msa0563260:CDS |
| TTCTTTGAGACCAGCCGGGG+TGG | 0.524770 | 4_1:+63575253 | None:intergenic |
| GCAGCTCTTAAAACAGCTCT+TGG | 0.525526 | 4_1:-63574061 | Msa0563260:intron |
| ATTTCTTCTTTGAGACCAGC+CGG | 0.527474 | 4_1:+63575248 | None:intergenic |
| CGTCTGCAATTCGGAGGTGG+AGG | 0.532433 | 4_1:+63572186 | None:intergenic |
| GCCCGGTATTGAACATCCCT+GGG | 0.534266 | 4_1:-63574141 | Msa0563260:CDS |
| AAAATTCTTTCGAGATTGCC+CGG | 0.535258 | 4_1:-63574158 | Msa0563260:CDS |
| ATCATCGGCGAAACTGGTTC+CGG | 0.539030 | 4_1:-63575152 | Msa0563260:CDS |
| TGTTGAGGTTCTTTATAGCA+AGG | 0.547344 | 4_1:-63574107 | Msa0563260:CDS |
| CAAGAGCTCGGTGTTCAACT+CGG | 0.548206 | 4_1:-63574943 | Msa0563260:CDS |
| TCAACAGGATACAACTTCCC+AGG | 0.549394 | 4_1:+63574124 | None:intergenic |
| GTTCAACTCGGAGAAGAAGT+TGG | 0.554535 | 4_1:-63574931 | Msa0563260:CDS |
| TTCGCCGATGATGACGGTGA+TGG | 0.556054 | 4_1:+63575163 | None:intergenic |
| GTAGGTATGTTATTGACTCT+GGG | 0.558149 | 4_1:-63571365 | Msa0563260:intron |
| ATTCGTCTGCAATTCGGAGG+TGG | 0.558572 | 4_1:+63572183 | None:intergenic |
| ACATACACGTCAACCGGAAG+GGG | 0.558616 | 4_1:-63573480 | Msa0563260:CDS |
| GGCAGTACAATCCATCTAGT+AGG | 0.558951 | 4_1:-63571329 | Msa0563260:CDS |
| TCTTTGAGACCAGCCGGGGT+GGG | 0.559320 | 4_1:+63575254 | None:intergenic |
| TTTCTTCTTTGAGACCAGCC+GGG | 0.559937 | 4_1:+63575249 | None:intergenic |
| GCTAATTTGAACAACATCAA+GGG | 0.564002 | 4_1:+63571299 | Msa0563250:intron |
| TTCTTCTTTGAGACCAGCCG+GGG | 0.568047 | 4_1:+63575250 | None:intergenic |
| AGACGAGTTGCTCAAGAGCT+CGG | 0.568585 | 4_1:-63574955 | Msa0563260:CDS |
| AAAGTCCGTGCTCTCGACGA+AGG | 0.573782 | 4_1:-63573276 | Msa0563260:CDS |
| GATCAACACTTTGAGATTGG+AGG | 0.580177 | 4_1:+63574213 | None:intergenic |
| CACACTGTAAGGGATTAAAG+TGG | 0.583314 | 4_1:-63575364 | Msa0563260:five_prime_UTR |
| GACACGGCGCGGTTGAGTGA+CGG | 0.584442 | 4_1:+63575076 | None:intergenic |
| AGACGGAGACGGCAGCGACA+CGG | 0.587372 | 4_1:+63575060 | None:intergenic |
| TACATACACGTCAACCGGAA+GGG | 0.587913 | 4_1:-63573481 | Msa0563260:CDS |
| ACCAGTTTCGCCGATGATGA+CGG | 0.589207 | 4_1:+63575157 | None:intergenic |
| AGGAACCTTCGTCGAGAGCA+CGG | 0.591250 | 4_1:+63573271 | None:intergenic |
| AAAGATTATAGCATCCATGC+AGG | 0.593499 | 4_1:+63573251 | None:intergenic |
| TCCCAGGGATGTTCAATACC+GGG | 0.594092 | 4_1:+63574140 | None:intergenic |
| AACTGATACAAACCTAGAGA+CGG | 0.623130 | 4_1:+63575043 | None:intergenic |
| ATACATACACGTCAACCGGA+AGG | 0.625733 | 4_1:-63573482 | Msa0563260:CDS |
| AGTTCTGTCTTCGAATCGAA+TGG | 0.626677 | 4_1:+63574903 | None:intergenic |
| CGGTAGCAAACACACTGTAA+GGG | 0.637470 | 4_1:-63575374 | None:intergenic |
| CAACAGGATACAACTTCCCA+GGG | 0.638137 | 4_1:+63574125 | None:intergenic |
| TGTTCAGAGATATATTGATG+GGG | 0.645124 | 4_1:-63574264 | Msa0563260:intron |
| ACACTGTAAGGGATTAAAGT+GGG | 0.647081 | 4_1:-63575363 | Msa0563260:five_prime_UTR |
| AGGTTCTTTATAGCAAGGAG+CGG | 0.653262 | 4_1:-63574102 | Msa0563260:CDS |
| TCTCGACGAAGGTTCCTGCA+TGG | 0.655756 | 4_1:-63573265 | Msa0563260:CDS |
| GCTGCATCGAGATAGTTCAC+AGG | 0.657754 | 4_1:+63574079 | None:intergenic |
| CTACTTACCTGCAATTCAGG+TGG | 0.661348 | 4_1:+63573210 | None:intergenic |
| ATGATTCGTCTGCAATTCGG+AGG | 0.666032 | 4_1:+63572180 | None:intergenic |
| GGTGGCAAAGAACCATGTAG+AGG | 0.666304 | 4_1:+63573228 | None:intergenic |
| ACTCTGGGTATGTAAAGCAG+AGG | 0.685103 | 4_1:-63571350 | Msa0563260:CDS |
| TACAAACCTAGAGACGGAGA+CGG | 0.685691 | 4_1:+63575049 | None:intergenic |
| GAGACGGCAGCGACACGGCG+CGG | 0.692315 | 4_1:+63575065 | None:intergenic |
| TCTCAGATGCTTCACCGCCG+CGG | 0.701620 | 4_1:-63575113 | Msa0563260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCAATATGTAATAAAAA+AGG | + | chr4_1:63572787-63572806 | None:intergenic | 10.0% |
| !! | TAAAATTTATCTAATTATTG+TGG | + | chr4_1:63573735-63573754 | None:intergenic | 10.0% |
| !! | ATATTATTAAAGAAAATTTG+AGG | - | chr4_1:63574387-63574406 | Msa0563260:intron | 10.0% |
| !! | TATTATTAAAGAAAATTTGA+GGG | - | chr4_1:63574388-63574407 | Msa0563260:intron | 10.0% |
| !! | TATTCAATAAATGAAATTTA+GGG | + | chr4_1:63574790-63574809 | None:intergenic | 10.0% |
| !! | ATATTCAATAAATGAAATTT+AGG | + | chr4_1:63574791-63574810 | None:intergenic | 10.0% |
| !! | TTATCAATATGTAATAAAAA+AGG | + | chr4_1:63572787-63572806 | None:intergenic | 10.0% |
| !! | TAAAATTTATCTAATTATTG+TGG | + | chr4_1:63573735-63573754 | None:intergenic | 10.0% |
| !! | ATATTATTAAAGAAAATTTG+AGG | - | chr4_1:63574387-63574406 | Msa0563260:intron | 10.0% |
| !! | TATTATTAAAGAAAATTTGA+GGG | - | chr4_1:63574388-63574407 | Msa0563260:intron | 10.0% |
| !! | TATTCAATAAATGAAATTTA+GGG | + | chr4_1:63574790-63574809 | None:intergenic | 10.0% |
| !! | ATATTCAATAAATGAAATTT+AGG | + | chr4_1:63574791-63574810 | None:intergenic | 10.0% |
| !!! | ATTGAATTAAGATTTTCAAA+TGG | + | chr4_1:63571364-63571383 | Msa0563250:intron | 15.0% |
| !! | ATTGAATGTAATTATATTGT+TGG | + | chr4_1:63572077-63572096 | None:intergenic | 15.0% |
| !!! | CAATTATACTATTTTCTATA+AGG | - | chr4_1:63572093-63572112 | Msa0563260:intron | 15.0% |
| !! | TATAATAATTTATCTTCACA+GGG | + | chr4_1:63574643-63574662 | None:intergenic | 15.0% |
| !! | TAAATCAATTATGTGAATAT+TGG | - | chr4_1:63574831-63574850 | Msa0563260:intron | 15.0% |
| !!! | TTTTTGATCATTACAAAAAA+TGG | + | chr4_1:63575059-63575078 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTAATGATCAAAA+AGG | - | chr4_1:63575058-63575077 | Msa0563260:CDS | 15.0% |
| !!! | TTACTTAATTTTATGAATGT+AGG | - | chr4_1:63575278-63575297 | Msa0563260:five_prime_UTR | 15.0% |
| !!! | ATTGAATTAAGATTTTCAAA+TGG | + | chr4_1:63571364-63571383 | Msa0563250:intron | 15.0% |
| !! | ATTGAATGTAATTATATTGT+TGG | + | chr4_1:63572077-63572096 | None:intergenic | 15.0% |
| !!! | CAATTATACTATTTTCTATA+AGG | - | chr4_1:63572093-63572112 | Msa0563260:intron | 15.0% |
| !! | TATAATAATTTATCTTCACA+GGG | + | chr4_1:63574643-63574662 | None:intergenic | 15.0% |
| !! | TAAATCAATTATGTGAATAT+TGG | - | chr4_1:63574831-63574850 | Msa0563260:intron | 15.0% |
| !!! | TTTTTGATCATTACAAAAAA+TGG | + | chr4_1:63575059-63575078 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTAATGATCAAAA+AGG | - | chr4_1:63575058-63575077 | Msa0563260:CDS | 15.0% |
| !!! | TTACTTAATTTTATGAATGT+AGG | - | chr4_1:63575278-63575297 | Msa0563260:five_prime_UTR | 15.0% |
| !! | TGATTATTCTGTTATCATAT+TGG | - | chr4_1:63571949-63571968 | Msa0563260:intron | 20.0% |
| !! | GCTCTTTCTATAATTATTAT+AGG | - | chr4_1:63572291-63572310 | Msa0563260:intron | 20.0% |
| !!! | CTTCTCATATATTTGAATTT+TGG | - | chr4_1:63572342-63572361 | Msa0563260:intron | 20.0% |
| !! | ATTATGTTAGAATGAAGATA+GGG | + | chr4_1:63572644-63572663 | None:intergenic | 20.0% |
| !! | AATTATGTTAGAATGAAGAT+AGG | + | chr4_1:63572645-63572664 | None:intergenic | 20.0% |
| !! | TATCTTCATTCTAACATAAT+TGG | - | chr4_1:63572644-63572663 | Msa0563260:intron | 20.0% |
| !! | GTGTAAATAAATTTGTAGTA+AGG | - | chr4_1:63572727-63572746 | Msa0563260:intron | 20.0% |
| !!! | GATATTTTAATATTCATGAC+TGG | - | chr4_1:63573203-63573222 | Msa0563260:intron | 20.0% |
| !! | TACATCATAATAGAAACTAA+AGG | + | chr4_1:63573296-63573315 | None:intergenic | 20.0% |
| !! | TATACTTATACCAATACAAA+TGG | - | chr4_1:63573704-63573723 | Msa0563260:intron | 20.0% |
| !! | ATACTTATACCAATACAAAT+GGG | - | chr4_1:63573705-63573724 | Msa0563260:intron | 20.0% |
| !! | TTTATATGTAGTATTATAGC+TGG | - | chr4_1:63573806-63573825 | Msa0563260:intron | 20.0% |
| !! | AATATACAACACTAAGAAAT+GGG | + | chr4_1:63573871-63573890 | None:intergenic | 20.0% |
| !! | AAATATACAACACTAAGAAA+TGG | + | chr4_1:63573872-63573891 | None:intergenic | 20.0% |
| !! | ATAGTTTCTTTGTAATGTAT+TGG | + | chr4_1:63573967-63573986 | None:intergenic | 20.0% |
| !!! | GAAACTATTTTGATATTATC+TGG | - | chr4_1:63573979-63573998 | Msa0563260:intron | 20.0% |
| !!! | TATTTTGATATTATCTGGAA+AGG | - | chr4_1:63573984-63574003 | Msa0563260:intron | 20.0% |
| !! | CTAGTATTAAAGAAAATTCT+AGG | + | chr4_1:63574086-63574105 | None:intergenic | 20.0% |
| !! | GTATAATAATTTATCTTCAC+AGG | + | chr4_1:63574644-63574663 | None:intergenic | 20.0% |
| !! | TTTCATTTATTGAATATGTG+CGG | - | chr4_1:63574794-63574813 | Msa0563260:intron | 20.0% |
| !!! | ATTTATTATTTCGCATTTTG+AGG | - | chr4_1:63575100-63575119 | Msa0563260:CDS | 20.0% |
| !! | TGATTATTCTGTTATCATAT+TGG | - | chr4_1:63571949-63571968 | Msa0563260:intron | 20.0% |
| !! | GCTCTTTCTATAATTATTAT+AGG | - | chr4_1:63572291-63572310 | Msa0563260:intron | 20.0% |
| !!! | CTTCTCATATATTTGAATTT+TGG | - | chr4_1:63572342-63572361 | Msa0563260:intron | 20.0% |
| !! | ATTATGTTAGAATGAAGATA+GGG | + | chr4_1:63572644-63572663 | None:intergenic | 20.0% |
| !! | AATTATGTTAGAATGAAGAT+AGG | + | chr4_1:63572645-63572664 | None:intergenic | 20.0% |
| !! | TATCTTCATTCTAACATAAT+TGG | - | chr4_1:63572644-63572663 | Msa0563260:intron | 20.0% |
| !! | GTGTAAATAAATTTGTAGTA+AGG | - | chr4_1:63572727-63572746 | Msa0563260:intron | 20.0% |
| !!! | GATATTTTAATATTCATGAC+TGG | - | chr4_1:63573203-63573222 | Msa0563260:intron | 20.0% |
| !! | TACATCATAATAGAAACTAA+AGG | + | chr4_1:63573296-63573315 | None:intergenic | 20.0% |
| !! | TATACTTATACCAATACAAA+TGG | - | chr4_1:63573704-63573723 | Msa0563260:intron | 20.0% |
| !! | ATACTTATACCAATACAAAT+GGG | - | chr4_1:63573705-63573724 | Msa0563260:intron | 20.0% |
| !! | TTTATATGTAGTATTATAGC+TGG | - | chr4_1:63573806-63573825 | Msa0563260:intron | 20.0% |
| !! | AATATACAACACTAAGAAAT+GGG | + | chr4_1:63573871-63573890 | None:intergenic | 20.0% |
| !! | AAATATACAACACTAAGAAA+TGG | + | chr4_1:63573872-63573891 | None:intergenic | 20.0% |
| !! | ATAGTTTCTTTGTAATGTAT+TGG | + | chr4_1:63573967-63573986 | None:intergenic | 20.0% |
| !!! | GAAACTATTTTGATATTATC+TGG | - | chr4_1:63573979-63573998 | Msa0563260:intron | 20.0% |
| !!! | TATTTTGATATTATCTGGAA+AGG | - | chr4_1:63573984-63574003 | Msa0563260:intron | 20.0% |
| !! | CTAGTATTAAAGAAAATTCT+AGG | + | chr4_1:63574086-63574105 | None:intergenic | 20.0% |
| !! | GTATAATAATTTATCTTCAC+AGG | + | chr4_1:63574644-63574663 | None:intergenic | 20.0% |
| !! | TTTCATTTATTGAATATGTG+CGG | - | chr4_1:63574794-63574813 | Msa0563260:intron | 20.0% |
| !!! | ATTTATTATTTCGCATTTTG+AGG | - | chr4_1:63575100-63575119 | Msa0563260:CDS | 20.0% |
| !!! | TTTTCAAATGGTTCTAAAAC+TGG | + | chr4_1:63571352-63571371 | Msa0563250:intron | 25.0% |
| !! | ACAGAATAATCATTTAGTTC+AGG | + | chr4_1:63571941-63571960 | None:intergenic | 25.0% |
| ! | TCTATAAGGAAAAAGCTTTA+TGG | - | chr4_1:63572107-63572126 | Msa0563260:intron | 25.0% |
| !! | CATGAGATTGCAAATTATTT+TGG | - | chr4_1:63572184-63572203 | Msa0563260:CDS | 25.0% |
| !! | ATATTACCTCTCTAAAAAAC+TGG | - | chr4_1:63572843-63572862 | Msa0563260:intron | 25.0% |
| ! | AGTAAATAAGACAGATGAAA+TGG | + | chr4_1:63573106-63573125 | None:intergenic | 25.0% |
| ! | AATATTAAAATATCCCCTTC+CGG | + | chr4_1:63573197-63573216 | None:intergenic | 25.0% |
| ! | ATATACAACACTAAGAAATG+GGG | + | chr4_1:63573870-63573889 | None:intergenic | 25.0% |
| ! | TGAAATAGCAAAGAAAAAAC+TGG | + | chr4_1:63574242-63574261 | None:intergenic | 25.0% |
| ! | ATATGATTATGAAGCAAACA+AGG | + | chr4_1:63574277-63574296 | None:intergenic | 25.0% |
| ! | TCTTGAAACAATATTCATCT+AGG | - | chr4_1:63574324-63574343 | Msa0563260:intron | 25.0% |
| ! | CATGTCTTATATAATCTTAC+AGG | - | chr4_1:63574438-63574457 | Msa0563260:intron | 25.0% |
| ! | TGACTAAGACAAAAATAAAC+AGG | + | chr4_1:63574732-63574751 | None:intergenic | 25.0% |
| !! | CAATATTTTCATCCTCTAAT+GGG | + | chr4_1:63574868-63574887 | None:intergenic | 25.0% |
| !! | ACAATATTTTCATCCTCTAA+TGG | + | chr4_1:63574869-63574888 | None:intergenic | 25.0% |
| ! | TTAGAGGATGAAAATATTGT+TGG | - | chr4_1:63574869-63574888 | Msa0563260:intron | 25.0% |
| ! | TAAACACACCAAATTACAAT+GGG | + | chr4_1:63575164-63575183 | None:intergenic | 25.0% |
| ! | ATAAACACACCAAATTACAA+TGG | + | chr4_1:63575165-63575184 | None:intergenic | 25.0% |
| !!! | TTTTCAAATGGTTCTAAAAC+TGG | + | chr4_1:63571352-63571371 | Msa0563250:intron | 25.0% |
| !! | ACAGAATAATCATTTAGTTC+AGG | + | chr4_1:63571941-63571960 | None:intergenic | 25.0% |
| ! | TCTATAAGGAAAAAGCTTTA+TGG | - | chr4_1:63572107-63572126 | Msa0563260:intron | 25.0% |
| !! | CATGAGATTGCAAATTATTT+TGG | - | chr4_1:63572184-63572203 | Msa0563260:CDS | 25.0% |
| !! | ATATTACCTCTCTAAAAAAC+TGG | - | chr4_1:63572843-63572862 | Msa0563260:intron | 25.0% |
| ! | AGTAAATAAGACAGATGAAA+TGG | + | chr4_1:63573106-63573125 | None:intergenic | 25.0% |
| ! | AATATTAAAATATCCCCTTC+CGG | + | chr4_1:63573197-63573216 | None:intergenic | 25.0% |
| ! | ATATACAACACTAAGAAATG+GGG | + | chr4_1:63573870-63573889 | None:intergenic | 25.0% |
| ! | TGAAATAGCAAAGAAAAAAC+TGG | + | chr4_1:63574242-63574261 | None:intergenic | 25.0% |
| ! | ATATGATTATGAAGCAAACA+AGG | + | chr4_1:63574277-63574296 | None:intergenic | 25.0% |
| ! | TCTTGAAACAATATTCATCT+AGG | - | chr4_1:63574324-63574343 | Msa0563260:intron | 25.0% |
| ! | CATGTCTTATATAATCTTAC+AGG | - | chr4_1:63574438-63574457 | Msa0563260:intron | 25.0% |
| ! | TGACTAAGACAAAAATAAAC+AGG | + | chr4_1:63574732-63574751 | None:intergenic | 25.0% |
| !! | CAATATTTTCATCCTCTAAT+GGG | + | chr4_1:63574868-63574887 | None:intergenic | 25.0% |
| !! | ACAATATTTTCATCCTCTAA+TGG | + | chr4_1:63574869-63574888 | None:intergenic | 25.0% |
| ! | TTAGAGGATGAAAATATTGT+TGG | - | chr4_1:63574869-63574888 | Msa0563260:intron | 25.0% |
| ! | TAAACACACCAAATTACAAT+GGG | + | chr4_1:63575164-63575183 | None:intergenic | 25.0% |
| ! | ATAAACACACCAAATTACAA+TGG | + | chr4_1:63575165-63575184 | None:intergenic | 25.0% |
| TGGTCTCAAAGAAGAAATAA+TGG | - | chr4_1:63571418-63571437 | Msa0563260:intron | 30.0% | |
| TTCAATGCTTCATTCTCAAT+TGG | - | chr4_1:63571817-63571836 | Msa0563260:intron | 30.0% | |
| ! | TCATTCAATTCGATTCGATT+AGG | - | chr4_1:63571873-63571892 | Msa0563260:intron | 30.0% |
| TGTGTTCAGAGATATATTGA+TGG | - | chr4_1:63572395-63572414 | Msa0563260:intron | 30.0% | |
| GTGTTCAGAGATATATTGAT+GGG | - | chr4_1:63572396-63572415 | Msa0563260:intron | 30.0% | |
| TGTTCAGAGATATATTGATG+GGG | - | chr4_1:63572397-63572416 | Msa0563260:intron | 30.0% | |
| TTTAATATTCATGACTGGAC+AGG | - | chr4_1:63573208-63573227 | Msa0563260:intron | 30.0% | |
| TAGAGTAGAAGTTATTGTAG+TGG | + | chr4_1:63573256-63573275 | None:intergenic | 30.0% | |
| ATTCCAAATACAATCAGTCA+AGG | - | chr4_1:63573528-63573547 | Msa0563260:intron | 30.0% | |
| ATACGAGTACTAATTCAAAG+TGG | + | chr4_1:63573598-63573617 | None:intergenic | 30.0% | |
| CGAAAAATCTGGAAAATTAC+AGG | + | chr4_1:63573844-63573863 | None:intergenic | 30.0% | |
| !! | GTGTTGTATCTGTTATTTCT+AGG | - | chr4_1:63573905-63573924 | Msa0563260:intron | 30.0% |
| TAAATGAAATTTAGGGACTC+AGG | + | chr4_1:63574783-63574802 | None:intergenic | 30.0% | |
| ACAGAAATAGAATACATCAC+TGG | + | chr4_1:63574931-63574950 | None:intergenic | 30.0% | |
| TTTGAAAAACCACATGCAAT+AGG | - | chr4_1:63574960-63574979 | Msa0563260:intron | 30.0% | |
| !! | ATGTGTGTTTGCTTTTCTTT+TGG | - | chr4_1:63574983-63575002 | Msa0563260:intron | 30.0% |
| ! | AGTTGATGTGCTTTATCTAA+AGG | + | chr4_1:63575230-63575249 | None:intergenic | 30.0% |
| GCTAATTTGAACAACATCAA+GGG | + | chr4_1:63575365-63575384 | None:intergenic | 30.0% | |
| TGCTAATTTGAACAACATCA+AGG | + | chr4_1:63575366-63575385 | None:intergenic | 30.0% | |
| TGGTCTCAAAGAAGAAATAA+TGG | - | chr4_1:63571418-63571437 | Msa0563260:intron | 30.0% | |
| TTCAATGCTTCATTCTCAAT+TGG | - | chr4_1:63571817-63571836 | Msa0563260:intron | 30.0% | |
| ! | TCATTCAATTCGATTCGATT+AGG | - | chr4_1:63571873-63571892 | Msa0563260:intron | 30.0% |
| TGTGTTCAGAGATATATTGA+TGG | - | chr4_1:63572395-63572414 | Msa0563260:intron | 30.0% | |
| GTGTTCAGAGATATATTGAT+GGG | - | chr4_1:63572396-63572415 | Msa0563260:intron | 30.0% | |
| TGTTCAGAGATATATTGATG+GGG | - | chr4_1:63572397-63572416 | Msa0563260:intron | 30.0% | |
| TTTAATATTCATGACTGGAC+AGG | - | chr4_1:63573208-63573227 | Msa0563260:intron | 30.0% | |
| TAGAGTAGAAGTTATTGTAG+TGG | + | chr4_1:63573256-63573275 | None:intergenic | 30.0% | |
| ATTCCAAATACAATCAGTCA+AGG | - | chr4_1:63573528-63573547 | Msa0563260:intron | 30.0% | |
| ATACGAGTACTAATTCAAAG+TGG | + | chr4_1:63573598-63573617 | None:intergenic | 30.0% | |
| CGAAAAATCTGGAAAATTAC+AGG | + | chr4_1:63573844-63573863 | None:intergenic | 30.0% | |
| !! | GTGTTGTATCTGTTATTTCT+AGG | - | chr4_1:63573905-63573924 | Msa0563260:intron | 30.0% |
| TAAATGAAATTTAGGGACTC+AGG | + | chr4_1:63574783-63574802 | None:intergenic | 30.0% | |
| ACAGAAATAGAATACATCAC+TGG | + | chr4_1:63574931-63574950 | None:intergenic | 30.0% | |
| TTTGAAAAACCACATGCAAT+AGG | - | chr4_1:63574960-63574979 | Msa0563260:intron | 30.0% | |
| !! | ATGTGTGTTTGCTTTTCTTT+TGG | - | chr4_1:63574983-63575002 | Msa0563260:intron | 30.0% |
| ! | AGTTGATGTGCTTTATCTAA+AGG | + | chr4_1:63575230-63575249 | None:intergenic | 30.0% |
| GCTAATTTGAACAACATCAA+GGG | + | chr4_1:63575365-63575384 | None:intergenic | 30.0% | |
| TGCTAATTTGAACAACATCA+AGG | + | chr4_1:63575366-63575385 | None:intergenic | 30.0% | |
| ACACTGTAAGGGATTAAAGT+GGG | - | chr4_1:63571298-63571317 | Msa0563260:CDS | 35.0% | |
| TTCTCTTCGTATTGGACAAT+GGG | + | chr4_1:63571452-63571471 | Msa0563250:intron | 35.0% | |
| CGATAATCTTCTCTTCGTAT+TGG | + | chr4_1:63571460-63571479 | Msa0563250:CDS | 35.0% | |
| !!! | GGTGATGGAGTTTTTTTCTA+CGG | + | chr4_1:63571486-63571505 | Msa0563250:CDS | 35.0% |
| AACTGATACAAACCTAGAGA+CGG | + | chr4_1:63571621-63571640 | None:intergenic | 35.0% | |
| TATTGGATGAAGCTCATGAA+CGG | - | chr4_1:63571966-63571985 | Msa0563260:intron | 35.0% | |
| !! | CTAAAGTGTCGGTGTTATAA+AGG | + | chr4_1:63572017-63572036 | None:intergenic | 35.0% |
| ACACCGACACTTTAGATTAA+AGG | - | chr4_1:63572022-63572041 | Msa0563260:intron | 35.0% | |
| ! | ACGCCTTTAATCTAAAGTGT+CGG | + | chr4_1:63572028-63572047 | None:intergenic | 35.0% |
| AAAACTAGTGACGAGAAACA+AGG | - | chr4_1:63572136-63572155 | Msa0563260:CDS | 35.0% | |
| ! | AAGGAATTAATAAGTGCCGT+AGG | - | chr4_1:63572155-63572174 | Msa0563260:CDS | 35.0% |
| CAATCTCATGAAAGATCCTA+CGG | + | chr4_1:63572174-63572193 | None:intergenic | 35.0% | |
| AAAATTCTTTCGAGATTGCC+CGG | - | chr4_1:63572503-63572522 | Msa0563260:intron | 35.0% | |
| TTGCTATAAAGAACCTCAAC+AGG | + | chr4_1:63572555-63572574 | None:intergenic | 35.0% | |
| TGTTGAGGTTCTTTATAGCA+AGG | - | chr4_1:63572554-63572573 | Msa0563260:intron | 35.0% | |
| !!! | CTTAGACCAGTTTTTTAGAG+AGG | + | chr4_1:63572852-63572871 | None:intergenic | 35.0% |
| TGGTCTAAGCTATTGAAAAG+AGG | - | chr4_1:63572863-63572882 | Msa0563260:intron | 35.0% | |
| !!! | TGGCTGATAACTTTTCAAGT+AGG | - | chr4_1:63573026-63573045 | Msa0563260:intron | 35.0% |
| TTCAAGTAGGAAGTTAGTCA+AGG | - | chr4_1:63573039-63573058 | Msa0563260:intron | 35.0% | |
| ! | TTTCTTCCAGTTTTTCACGA+GGG | - | chr4_1:63573141-63573160 | Msa0563260:intron | 35.0% |
| AGATATACATACACGTCAAC+CGG | - | chr4_1:63573175-63573194 | Msa0563260:intron | 35.0% | |
| !! | AGTTTTGATGAGCTATATGC+AGG | - | chr4_1:63573327-63573346 | Msa0563260:intron | 35.0% |
| !! | AGAGAAGTTGGTATCGAAAA+TGG | - | chr4_1:63573357-63573376 | Msa0563260:intron | 35.0% |
| AAAGATTATAGCATCCATGC+AGG | + | chr4_1:63573413-63573432 | None:intergenic | 35.0% | |
| GCTATAATCTTTCCTCTACA+TGG | - | chr4_1:63573421-63573440 | Msa0563260:intron | 35.0% | |
| AAACTACTTACCTGCAATTC+AGG | + | chr4_1:63573457-63573476 | None:intergenic | 35.0% | |
| CTTCCTTGACTGATTGTATT+TGG | + | chr4_1:63573534-63573553 | None:intergenic | 35.0% | |
| TGTGGTATTCCCATTTGTAT+TGG | + | chr4_1:63573717-63573736 | None:intergenic | 35.0% | |
| TGTAGTATTATAGCTGGTGT+CGG | - | chr4_1:63573812-63573831 | Msa0563260:intron | 35.0% | |
| AAATGGGGATACGAAAAATC+TGG | + | chr4_1:63573855-63573874 | None:intergenic | 35.0% | |
| !! | TCTTACCTCTCCTTTTAGTT+TGG | - | chr4_1:63574032-63574051 | Msa0563260:intron | 35.0% |
| TCACTGTAGACCAAACTAAA+AGG | + | chr4_1:63574045-63574064 | None:intergenic | 35.0% | |
| AAATTCCTTCATGTGTCATC+AGG | - | chr4_1:63574156-63574175 | Msa0563260:CDS | 35.0% | |
| AATTCCTTCATGTGTCATCA+GGG | - | chr4_1:63574157-63574176 | Msa0563260:CDS | 35.0% | |
| TGTCATTGAACTATCTTGAG+AGG | - | chr4_1:63574210-63574229 | Msa0563260:CDS | 35.0% | |
| ACAATGATTCGTCTGCAATT+CGG | + | chr4_1:63574487-63574506 | None:intergenic | 35.0% | |
| GAAACTTCTTTGACTGTTGA+TGG | - | chr4_1:63574523-63574542 | Msa0563260:intron | 35.0% | |
| ! | TCTTTTGGACTGCATATGAT+TGG | - | chr4_1:63574998-63575017 | Msa0563260:intron | 35.0% |
| TTACAATGGGCGAATTCAAA+TGG | + | chr4_1:63575151-63575170 | None:intergenic | 35.0% | |
| TGAATTCGCCCATTGTAATT+TGG | - | chr4_1:63575153-63575172 | Msa0563260:CDS | 35.0% | |
| !! | TGTAGGTATGTTATTGACTC+TGG | - | chr4_1:63575295-63575314 | Msa0563260:five_prime_UTR | 35.0% |
| !! | GTAGGTATGTTATTGACTCT+GGG | - | chr4_1:63575296-63575315 | Msa0563260:five_prime_UTR | 35.0% |
| ACACTGTAAGGGATTAAAGT+GGG | - | chr4_1:63571298-63571317 | Msa0563260:CDS | 35.0% | |
| TTCTCTTCGTATTGGACAAT+GGG | + | chr4_1:63571452-63571471 | Msa0563250:intron | 35.0% | |
| CGATAATCTTCTCTTCGTAT+TGG | + | chr4_1:63571460-63571479 | Msa0563250:CDS | 35.0% | |
| !!! | GGTGATGGAGTTTTTTTCTA+CGG | + | chr4_1:63571486-63571505 | Msa0563250:CDS | 35.0% |
| AACTGATACAAACCTAGAGA+CGG | + | chr4_1:63571621-63571640 | None:intergenic | 35.0% | |
| TATTGGATGAAGCTCATGAA+CGG | - | chr4_1:63571966-63571985 | Msa0563260:intron | 35.0% | |
| !! | CTAAAGTGTCGGTGTTATAA+AGG | + | chr4_1:63572017-63572036 | None:intergenic | 35.0% |
| ACACCGACACTTTAGATTAA+AGG | - | chr4_1:63572022-63572041 | Msa0563260:intron | 35.0% | |
| ! | ACGCCTTTAATCTAAAGTGT+CGG | + | chr4_1:63572028-63572047 | None:intergenic | 35.0% |
| AAAACTAGTGACGAGAAACA+AGG | - | chr4_1:63572136-63572155 | Msa0563260:CDS | 35.0% | |
| ! | AAGGAATTAATAAGTGCCGT+AGG | - | chr4_1:63572155-63572174 | Msa0563260:CDS | 35.0% |
| CAATCTCATGAAAGATCCTA+CGG | + | chr4_1:63572174-63572193 | None:intergenic | 35.0% | |
| AAAATTCTTTCGAGATTGCC+CGG | - | chr4_1:63572503-63572522 | Msa0563260:intron | 35.0% | |
| TTGCTATAAAGAACCTCAAC+AGG | + | chr4_1:63572555-63572574 | None:intergenic | 35.0% | |
| TGTTGAGGTTCTTTATAGCA+AGG | - | chr4_1:63572554-63572573 | Msa0563260:intron | 35.0% | |
| !!! | CTTAGACCAGTTTTTTAGAG+AGG | + | chr4_1:63572852-63572871 | None:intergenic | 35.0% |
| TGGTCTAAGCTATTGAAAAG+AGG | - | chr4_1:63572863-63572882 | Msa0563260:intron | 35.0% | |
| !!! | TGGCTGATAACTTTTCAAGT+AGG | - | chr4_1:63573026-63573045 | Msa0563260:intron | 35.0% |
| TTCAAGTAGGAAGTTAGTCA+AGG | - | chr4_1:63573039-63573058 | Msa0563260:intron | 35.0% | |
| ! | TTTCTTCCAGTTTTTCACGA+GGG | - | chr4_1:63573141-63573160 | Msa0563260:intron | 35.0% |
| AGATATACATACACGTCAAC+CGG | - | chr4_1:63573175-63573194 | Msa0563260:intron | 35.0% | |
| !! | AGTTTTGATGAGCTATATGC+AGG | - | chr4_1:63573327-63573346 | Msa0563260:intron | 35.0% |
| !! | AGAGAAGTTGGTATCGAAAA+TGG | - | chr4_1:63573357-63573376 | Msa0563260:intron | 35.0% |
| AAAGATTATAGCATCCATGC+AGG | + | chr4_1:63573413-63573432 | None:intergenic | 35.0% | |
| GCTATAATCTTTCCTCTACA+TGG | - | chr4_1:63573421-63573440 | Msa0563260:intron | 35.0% | |
| AAACTACTTACCTGCAATTC+AGG | + | chr4_1:63573457-63573476 | None:intergenic | 35.0% | |
| CTTCCTTGACTGATTGTATT+TGG | + | chr4_1:63573534-63573553 | None:intergenic | 35.0% | |
| TGTGGTATTCCCATTTGTAT+TGG | + | chr4_1:63573717-63573736 | None:intergenic | 35.0% | |
| TGTAGTATTATAGCTGGTGT+CGG | - | chr4_1:63573812-63573831 | Msa0563260:intron | 35.0% | |
| AAATGGGGATACGAAAAATC+TGG | + | chr4_1:63573855-63573874 | None:intergenic | 35.0% | |
| !! | TCTTACCTCTCCTTTTAGTT+TGG | - | chr4_1:63574032-63574051 | Msa0563260:intron | 35.0% |
| TCACTGTAGACCAAACTAAA+AGG | + | chr4_1:63574045-63574064 | None:intergenic | 35.0% | |
| AAATTCCTTCATGTGTCATC+AGG | - | chr4_1:63574156-63574175 | Msa0563260:CDS | 35.0% | |
| AATTCCTTCATGTGTCATCA+GGG | - | chr4_1:63574157-63574176 | Msa0563260:CDS | 35.0% | |
| TGTCATTGAACTATCTTGAG+AGG | - | chr4_1:63574210-63574229 | Msa0563260:CDS | 35.0% | |
| ACAATGATTCGTCTGCAATT+CGG | + | chr4_1:63574487-63574506 | None:intergenic | 35.0% | |
| GAAACTTCTTTGACTGTTGA+TGG | - | chr4_1:63574523-63574542 | Msa0563260:intron | 35.0% | |
| ! | TCTTTTGGACTGCATATGAT+TGG | - | chr4_1:63574998-63575017 | Msa0563260:intron | 35.0% |
| TTACAATGGGCGAATTCAAA+TGG | + | chr4_1:63575151-63575170 | None:intergenic | 35.0% | |
| TGAATTCGCCCATTGTAATT+TGG | - | chr4_1:63575153-63575172 | Msa0563260:CDS | 35.0% | |
| !! | TGTAGGTATGTTATTGACTC+TGG | - | chr4_1:63575295-63575314 | Msa0563260:five_prime_UTR | 35.0% |
| !! | GTAGGTATGTTATTGACTCT+GGG | - | chr4_1:63575296-63575315 | Msa0563260:five_prime_UTR | 35.0% |
| CACACTGTAAGGGATTAAAG+TGG | - | chr4_1:63571297-63571316 | Msa0563260:CDS | 40.0% | |
| !! | AAAACTTGTTTTTCCCACCC+CGG | - | chr4_1:63571394-63571413 | Msa0563260:intron | 40.0% |
| !! | ATTTCTTCTTTGAGACCAGC+CGG | + | chr4_1:63571416-63571435 | Msa0563250:intron | 40.0% |
| CTTCTCTTCGTATTGGACAA+TGG | + | chr4_1:63571453-63571472 | Msa0563250:intron | 40.0% | |
| GTTAGTTGGAGAGTTGAAAG+GGG | + | chr4_1:63571644-63571663 | None:intergenic | 40.0% | |
| ! | GGTTAGTTGGAGAGTTGAAA+GGG | + | chr4_1:63571645-63571664 | None:intergenic | 40.0% |
| AGTTCTGTCTTCGAATCGAA+TGG | + | chr4_1:63571761-63571780 | None:intergenic | 40.0% | |
| TCGATTAGGTACCTAACTGA+CGG | - | chr4_1:63571887-63571906 | Msa0563260:intron | 40.0% | |
| !! | GATCAACACTTTGAGATTGG+AGG | + | chr4_1:63572451-63572470 | None:intergenic | 40.0% |
| !! | CGTGATCAACACTTTGAGAT+TGG | + | chr4_1:63572454-63572473 | None:intergenic | 40.0% |
| AGGTTCTTTATAGCAAGGAG+CGG | - | chr4_1:63572559-63572578 | Msa0563260:intron | 40.0% | |
| AGTAAATAAGCTGCCAAGAG+AGG | - | chr4_1:63572914-63572933 | Msa0563260:intron | 40.0% | |
| GTAAATAAGCTGCCAAGAGA+GGG | - | chr4_1:63572915-63572934 | Msa0563260:intron | 40.0% | |
| ! | TTCCTCCTTTGCTGATTGAA+TGG | - | chr4_1:63573006-63573025 | Msa0563260:intron | 40.0% |
| ATCAGCCATTCAATCAGCAA+AGG | + | chr4_1:63573014-63573033 | None:intergenic | 40.0% | |
| ! | GTTTCTTCCAGTTTTTCACG+AGG | - | chr4_1:63573140-63573159 | Msa0563260:intron | 40.0% |
| GTATTGTGCACTATCCATGT+TGG | - | chr4_1:63573614-63573633 | Msa0563260:intron | 40.0% | |
| ACATGGATACATGTCCAACA+TGG | + | chr4_1:63573631-63573650 | None:intergenic | 40.0% | |
| TGTTGGACATGTATCCATGT+CGG | - | chr4_1:63573631-63573650 | Msa0563260:intron | 40.0% | |
| GTAGTATTATAGCTGGTGTC+GGG | - | chr4_1:63573813-63573832 | Msa0563260:intron | 40.0% | |
| GTAGACCAAACTAAAAGGAG+AGG | + | chr4_1:63574040-63574059 | None:intergenic | 40.0% | |
| ATTCCTTCATGTGTCATCAG+GGG | - | chr4_1:63574158-63574177 | Msa0563260:CDS | 40.0% | |
| !! | ACTGTTGATGGTGTAGTGTA+AGG | - | chr4_1:63574535-63574554 | Msa0563260:intron | 40.0% |
| !! | CTGTTGATGGTGTAGTGTAA+GGG | - | chr4_1:63574536-63574555 | Msa0563260:intron | 40.0% |
| AACACACATCCTATTGCATG+TGG | + | chr4_1:63574972-63574991 | None:intergenic | 40.0% | |
| GCGAATTCAAATGGCAAGAA+GGG | + | chr4_1:63575142-63575161 | None:intergenic | 40.0% | |
| AGGGAATACATCCTACTAGA+TGG | + | chr4_1:63575346-63575365 | None:intergenic | 40.0% | |
| CACACTGTAAGGGATTAAAG+TGG | - | chr4_1:63571297-63571316 | Msa0563260:CDS | 40.0% | |
| !! | AAAACTTGTTTTTCCCACCC+CGG | - | chr4_1:63571394-63571413 | Msa0563260:intron | 40.0% |
| !! | ATTTCTTCTTTGAGACCAGC+CGG | + | chr4_1:63571416-63571435 | Msa0563250:intron | 40.0% |
| CTTCTCTTCGTATTGGACAA+TGG | + | chr4_1:63571453-63571472 | Msa0563250:intron | 40.0% | |
| GTTAGTTGGAGAGTTGAAAG+GGG | + | chr4_1:63571644-63571663 | None:intergenic | 40.0% | |
| ! | GGTTAGTTGGAGAGTTGAAA+GGG | + | chr4_1:63571645-63571664 | None:intergenic | 40.0% |
| AGTTCTGTCTTCGAATCGAA+TGG | + | chr4_1:63571761-63571780 | None:intergenic | 40.0% | |
| TCGATTAGGTACCTAACTGA+CGG | - | chr4_1:63571887-63571906 | Msa0563260:intron | 40.0% | |
| !! | GATCAACACTTTGAGATTGG+AGG | + | chr4_1:63572451-63572470 | None:intergenic | 40.0% |
| !! | CGTGATCAACACTTTGAGAT+TGG | + | chr4_1:63572454-63572473 | None:intergenic | 40.0% |
| AGGTTCTTTATAGCAAGGAG+CGG | - | chr4_1:63572559-63572578 | Msa0563260:intron | 40.0% | |
| AGTAAATAAGCTGCCAAGAG+AGG | - | chr4_1:63572914-63572933 | Msa0563260:intron | 40.0% | |
| GTAAATAAGCTGCCAAGAGA+GGG | - | chr4_1:63572915-63572934 | Msa0563260:intron | 40.0% | |
| ! | TTCCTCCTTTGCTGATTGAA+TGG | - | chr4_1:63573006-63573025 | Msa0563260:intron | 40.0% |
| ATCAGCCATTCAATCAGCAA+AGG | + | chr4_1:63573014-63573033 | None:intergenic | 40.0% | |
| ! | GTTTCTTCCAGTTTTTCACG+AGG | - | chr4_1:63573140-63573159 | Msa0563260:intron | 40.0% |
| GTATTGTGCACTATCCATGT+TGG | - | chr4_1:63573614-63573633 | Msa0563260:intron | 40.0% | |
| ACATGGATACATGTCCAACA+TGG | + | chr4_1:63573631-63573650 | None:intergenic | 40.0% | |
| TGTTGGACATGTATCCATGT+CGG | - | chr4_1:63573631-63573650 | Msa0563260:intron | 40.0% | |
| GTAGTATTATAGCTGGTGTC+GGG | - | chr4_1:63573813-63573832 | Msa0563260:intron | 40.0% | |
| GTAGACCAAACTAAAAGGAG+AGG | + | chr4_1:63574040-63574059 | None:intergenic | 40.0% | |
| ATTCCTTCATGTGTCATCAG+GGG | - | chr4_1:63574158-63574177 | Msa0563260:CDS | 40.0% | |
| !! | ACTGTTGATGGTGTAGTGTA+AGG | - | chr4_1:63574535-63574554 | Msa0563260:intron | 40.0% |
| !! | CTGTTGATGGTGTAGTGTAA+GGG | - | chr4_1:63574536-63574555 | Msa0563260:intron | 40.0% |
| AACACACATCCTATTGCATG+TGG | + | chr4_1:63574972-63574991 | None:intergenic | 40.0% | |
| GCGAATTCAAATGGCAAGAA+GGG | + | chr4_1:63575142-63575161 | None:intergenic | 40.0% | |
| AGGGAATACATCCTACTAGA+TGG | + | chr4_1:63575346-63575365 | None:intergenic | 40.0% | |
| !! | TTTCTTCTTTGAGACCAGCC+GGG | + | chr4_1:63571415-63571434 | Msa0563250:intron | 45.0% |
| AACTCCATCACCGTCATCAT+CGG | - | chr4_1:63571494-63571513 | Msa0563260:intron | 45.0% | |
| AGAGAGTTGAGTGCTCTTAC+CGG | + | chr4_1:63571531-63571550 | Msa0563250:CDS | 45.0% | |
| TACAAACCTAGAGACGGAGA+CGG | + | chr4_1:63571615-63571634 | None:intergenic | 45.0% | |
| !! | GGGTTAGTTGGAGAGTTGAA+AGG | + | chr4_1:63571646-63571665 | None:intergenic | 45.0% |
| AACTCTCCAACTAACCCTAG+CGG | - | chr4_1:63571649-63571668 | Msa0563260:intron | 45.0% | |
| GTTCAACTCGGAGAAGAAGT+TGG | - | chr4_1:63571730-63571749 | Msa0563260:intron | 45.0% | |
| GAAGAAGAACACCGTCAGTT+AGG | + | chr4_1:63571901-63571920 | None:intergenic | 45.0% | |
| GATGGGGCTTATGAAACGTT+TGG | - | chr4_1:63572413-63572432 | Msa0563260:intron | 45.0% | |
| TTCCCAGGGATGTTCAATAC+CGG | + | chr4_1:63572525-63572544 | None:intergenic | 45.0% | |
| CAACAGGATACAACTTCCCA+GGG | + | chr4_1:63572539-63572558 | None:intergenic | 45.0% | |
| TCAACAGGATACAACTTCCC+AGG | + | chr4_1:63572540-63572559 | None:intergenic | 45.0% | |
| TGGGAAGTTGTATCCTGTTG+AGG | - | chr4_1:63572539-63572558 | Msa0563260:intron | 45.0% | |
| GCAGCTCTTAAAACAGCTCT+TGG | - | chr4_1:63572600-63572619 | Msa0563260:intron | 45.0% | |
| TTGAAAATGCCTCCCTCTCT+TGG | + | chr4_1:63572930-63572949 | None:intergenic | 45.0% | |
| AGCCATTCAATCAGCAAAGG+AGG | + | chr4_1:63573011-63573030 | None:intergenic | 45.0% | |
| GAAGTTAGTCAAGGCTGTCA+AGG | - | chr4_1:63573048-63573067 | Msa0563260:intron | 45.0% | |
| ! | TCCAGTTTTTCACGAGGGAT+TGG | - | chr4_1:63573146-63573165 | Msa0563260:intron | 45.0% |
| ACCAATCCCTCGTGAAAAAC+TGG | + | chr4_1:63573150-63573169 | None:intergenic | 45.0% | |
| ATACATACACGTCAACCGGA+AGG | - | chr4_1:63573179-63573198 | Msa0563260:intron | 45.0% | |
| TACATACACGTCAACCGGAA+GGG | - | chr4_1:63573180-63573199 | Msa0563260:intron | 45.0% | |
| GCAGGATGACATAGAGAAGT+TGG | - | chr4_1:63573345-63573364 | Msa0563260:intron | 45.0% | |
| TTCTTTGCCACCTGAATTGC+AGG | - | chr4_1:63573444-63573463 | Msa0563260:intron | 45.0% | |
| CTACTTACCTGCAATTCAGG+TGG | + | chr4_1:63573454-63573473 | None:intergenic | 45.0% | |
| !! | ACAATCAGAAGTGTCCGACA+TGG | + | chr4_1:63573648-63573667 | None:intergenic | 45.0% |
| AAAGATCCTGTGCTCTTGCA+CGG | - | chr4_1:63574107-63574126 | Msa0563260:CDS | 45.0% | |
| ATGATTCGTCTGCAATTCGG+AGG | + | chr4_1:63574484-63574503 | None:intergenic | 45.0% | |
| GTTAGTGTTGCACCCATTAG+AGG | - | chr4_1:63574853-63574872 | Msa0563260:intron | 45.0% | |
| GGCGAATTCAAATGGCAAGA+AGG | + | chr4_1:63575143-63575162 | None:intergenic | 45.0% | |
| ACTCTGGGTATGTAAAGCAG+AGG | - | chr4_1:63575311-63575330 | Msa0563260:five_prime_UTR | 45.0% | |
| GGCAGTACAATCCATCTAGT+AGG | - | chr4_1:63575332-63575351 | Msa0563260:five_prime_UTR | 45.0% | |
| !! | TTTCTTCTTTGAGACCAGCC+GGG | + | chr4_1:63571415-63571434 | Msa0563250:intron | 45.0% |
| AACTCCATCACCGTCATCAT+CGG | - | chr4_1:63571494-63571513 | Msa0563260:intron | 45.0% | |
| AGAGAGTTGAGTGCTCTTAC+CGG | + | chr4_1:63571531-63571550 | Msa0563250:CDS | 45.0% | |
| TACAAACCTAGAGACGGAGA+CGG | + | chr4_1:63571615-63571634 | None:intergenic | 45.0% | |
| !! | GGGTTAGTTGGAGAGTTGAA+AGG | + | chr4_1:63571646-63571665 | None:intergenic | 45.0% |
| AACTCTCCAACTAACCCTAG+CGG | - | chr4_1:63571649-63571668 | Msa0563260:intron | 45.0% | |
| GTTCAACTCGGAGAAGAAGT+TGG | - | chr4_1:63571730-63571749 | Msa0563260:intron | 45.0% | |
| GAAGAAGAACACCGTCAGTT+AGG | + | chr4_1:63571901-63571920 | None:intergenic | 45.0% | |
| GATGGGGCTTATGAAACGTT+TGG | - | chr4_1:63572413-63572432 | Msa0563260:intron | 45.0% | |
| TTCCCAGGGATGTTCAATAC+CGG | + | chr4_1:63572525-63572544 | None:intergenic | 45.0% | |
| CAACAGGATACAACTTCCCA+GGG | + | chr4_1:63572539-63572558 | None:intergenic | 45.0% | |
| TCAACAGGATACAACTTCCC+AGG | + | chr4_1:63572540-63572559 | None:intergenic | 45.0% | |
| TGGGAAGTTGTATCCTGTTG+AGG | - | chr4_1:63572539-63572558 | Msa0563260:intron | 45.0% | |
| GCAGCTCTTAAAACAGCTCT+TGG | - | chr4_1:63572600-63572619 | Msa0563260:intron | 45.0% | |
| TTGAAAATGCCTCCCTCTCT+TGG | + | chr4_1:63572930-63572949 | None:intergenic | 45.0% | |
| AGCCATTCAATCAGCAAAGG+AGG | + | chr4_1:63573011-63573030 | None:intergenic | 45.0% | |
| GAAGTTAGTCAAGGCTGTCA+AGG | - | chr4_1:63573048-63573067 | Msa0563260:intron | 45.0% | |
| ! | TCCAGTTTTTCACGAGGGAT+TGG | - | chr4_1:63573146-63573165 | Msa0563260:intron | 45.0% |
| ACCAATCCCTCGTGAAAAAC+TGG | + | chr4_1:63573150-63573169 | None:intergenic | 45.0% | |
| ATACATACACGTCAACCGGA+AGG | - | chr4_1:63573179-63573198 | Msa0563260:intron | 45.0% | |
| TACATACACGTCAACCGGAA+GGG | - | chr4_1:63573180-63573199 | Msa0563260:intron | 45.0% | |
| GCAGGATGACATAGAGAAGT+TGG | - | chr4_1:63573345-63573364 | Msa0563260:intron | 45.0% | |
| TTCTTTGCCACCTGAATTGC+AGG | - | chr4_1:63573444-63573463 | Msa0563260:intron | 45.0% | |
| CTACTTACCTGCAATTCAGG+TGG | + | chr4_1:63573454-63573473 | None:intergenic | 45.0% | |
| !! | ACAATCAGAAGTGTCCGACA+TGG | + | chr4_1:63573648-63573667 | None:intergenic | 45.0% |
| AAAGATCCTGTGCTCTTGCA+CGG | - | chr4_1:63574107-63574126 | Msa0563260:CDS | 45.0% | |
| ATGATTCGTCTGCAATTCGG+AGG | + | chr4_1:63574484-63574503 | None:intergenic | 45.0% | |
| GTTAGTGTTGCACCCATTAG+AGG | - | chr4_1:63574853-63574872 | Msa0563260:intron | 45.0% | |
| GGCGAATTCAAATGGCAAGA+AGG | + | chr4_1:63575143-63575162 | None:intergenic | 45.0% | |
| ACTCTGGGTATGTAAAGCAG+AGG | - | chr4_1:63575311-63575330 | Msa0563260:five_prime_UTR | 45.0% | |
| GGCAGTACAATCCATCTAGT+AGG | - | chr4_1:63575332-63575351 | Msa0563260:five_prime_UTR | 45.0% | |
| !!! | TTTTTTTTATAAAAACTATT+TGG | + | chr4_1:63573559-63573578 | None:intergenic | 5.0% |
| !!! | AAATAGTTTTTATAAAAAAA+AGG | - | chr4_1:63573558-63573577 | Msa0563260:intron | 5.0% |
| !!! | AATAGTTTTTATAAAAAAAA+GGG | - | chr4_1:63573559-63573578 | Msa0563260:intron | 5.0% |
| !!! | TTTTTTTTATAAAAACTATT+TGG | + | chr4_1:63573559-63573578 | None:intergenic | 5.0% |
| !!! | AAATAGTTTTTATAAAAAAA+AGG | - | chr4_1:63573558-63573577 | Msa0563260:intron | 5.0% |
| !!! | AATAGTTTTTATAAAAAAAA+GGG | - | chr4_1:63573559-63573578 | Msa0563260:intron | 5.0% |
| !! | TTCTTCTTTGAGACCAGCCG+GGG | + | chr4_1:63571414-63571433 | Msa0563250:intron | 50.0% |
| ACCAGTTTCGCCGATGATGA+CGG | + | chr4_1:63571507-63571526 | Msa0563250:CDS | 50.0% | |
| ! | ATCATCGGCGAAACTGGTTC+CGG | - | chr4_1:63571509-63571528 | Msa0563260:intron | 50.0% |
| TTGAGCAACTCGTCTGTGGA+AGG | + | chr4_1:63571701-63571720 | None:intergenic | 50.0% | |
| AGACGAGTTGCTCAAGAGCT+CGG | - | chr4_1:63571706-63571725 | Msa0563260:intron | 50.0% | |
| !! | CAAGAGCTCGGTGTTCAACT+CGG | - | chr4_1:63571718-63571737 | Msa0563260:intron | 50.0% |
| ACGACAGGCACACGAATCAT+GGG | + | chr4_1:63572243-63572262 | None:intergenic | 50.0% | |
| GCGAGAAACAATAGCACGAC+AGG | + | chr4_1:63572258-63572277 | None:intergenic | 50.0% | |
| ATCACGTCTGCTACGCTTGA+TGG | - | chr4_1:63572468-63572487 | Msa0563260:intron | 50.0% | |
| TCCCAGGGATGTTCAATACC+GGG | + | chr4_1:63572524-63572543 | None:intergenic | 50.0% | |
| GCTGCATCGAGATAGTTCAC+AGG | + | chr4_1:63572585-63572604 | None:intergenic | 50.0% | |
| AATAAGCTGCCAAGAGAGGG+AGG | - | chr4_1:63572918-63572937 | Msa0563260:intron | 50.0% | |
| ACATACACGTCAACCGGAAG+GGG | - | chr4_1:63573181-63573200 | Msa0563260:intron | 50.0% | |
| GGTGGCAAAGAACCATGTAG+AGG | + | chr4_1:63573436-63573455 | None:intergenic | 50.0% | |
| AAGATCCTGTGCTCTTGCAC+GGG | - | chr4_1:63574108-63574127 | Msa0563260:CDS | 50.0% | |
| GGTTCGGGAAAAGATGACAG+AGG | - | chr4_1:63574129-63574148 | Msa0563260:CDS | 50.0% | |
| CTTCCCCTGATGACACATGA+AGG | + | chr4_1:63574164-63574183 | None:intergenic | 50.0% | |
| ATTCGTCTGCAATTCGGAGG+TGG | + | chr4_1:63574481-63574500 | None:intergenic | 50.0% | |
| !! | TTCTTCTTTGAGACCAGCCG+GGG | + | chr4_1:63571414-63571433 | Msa0563250:intron | 50.0% |
| ACCAGTTTCGCCGATGATGA+CGG | + | chr4_1:63571507-63571526 | Msa0563250:CDS | 50.0% | |
| ! | ATCATCGGCGAAACTGGTTC+CGG | - | chr4_1:63571509-63571528 | Msa0563260:intron | 50.0% |
| TTGAGCAACTCGTCTGTGGA+AGG | + | chr4_1:63571701-63571720 | None:intergenic | 50.0% | |
| AGACGAGTTGCTCAAGAGCT+CGG | - | chr4_1:63571706-63571725 | Msa0563260:intron | 50.0% | |
| !! | CAAGAGCTCGGTGTTCAACT+CGG | - | chr4_1:63571718-63571737 | Msa0563260:intron | 50.0% |
| ACGACAGGCACACGAATCAT+GGG | + | chr4_1:63572243-63572262 | None:intergenic | 50.0% | |
| GCGAGAAACAATAGCACGAC+AGG | + | chr4_1:63572258-63572277 | None:intergenic | 50.0% | |
| ATCACGTCTGCTACGCTTGA+TGG | - | chr4_1:63572468-63572487 | Msa0563260:intron | 50.0% | |
| TCCCAGGGATGTTCAATACC+GGG | + | chr4_1:63572524-63572543 | None:intergenic | 50.0% | |
| GCTGCATCGAGATAGTTCAC+AGG | + | chr4_1:63572585-63572604 | None:intergenic | 50.0% | |
| AATAAGCTGCCAAGAGAGGG+AGG | - | chr4_1:63572918-63572937 | Msa0563260:intron | 50.0% | |
| ACATACACGTCAACCGGAAG+GGG | - | chr4_1:63573181-63573200 | Msa0563260:intron | 50.0% | |
| GGTGGCAAAGAACCATGTAG+AGG | + | chr4_1:63573436-63573455 | None:intergenic | 50.0% | |
| AAGATCCTGTGCTCTTGCAC+GGG | - | chr4_1:63574108-63574127 | Msa0563260:CDS | 50.0% | |
| GGTTCGGGAAAAGATGACAG+AGG | - | chr4_1:63574129-63574148 | Msa0563260:CDS | 50.0% | |
| CTTCCCCTGATGACACATGA+AGG | + | chr4_1:63574164-63574183 | None:intergenic | 50.0% | |
| ATTCGTCTGCAATTCGGAGG+TGG | + | chr4_1:63574481-63574500 | None:intergenic | 50.0% | |
| !! | TTCGCCGATGATGACGGTGA+TGG | + | chr4_1:63571501-63571520 | Msa0563250:CDS | 55.0% |
| ACCGTCATCATCGGCGAAAC+TGG | - | chr4_1:63571503-63571522 | Msa0563260:intron | 55.0% | |
| !!! | CGATTTTGGAGTAACCGCGG+CGG | + | chr4_1:63571565-63571584 | None:intergenic | 55.0% |
| !!! | CGGCGATTTTGGAGTAACCG+CGG | + | chr4_1:63571568-63571587 | None:intergenic | 55.0% |
| ! | CGGTTGAGTGACGGCGATTT+TGG | + | chr4_1:63571579-63571598 | None:intergenic | 55.0% |
| AACGATGTCGTCGTCCGCTA+GGG | + | chr4_1:63571666-63571685 | None:intergenic | 55.0% | |
| AAACGATGTCGTCGTCCGCT+AGG | + | chr4_1:63571667-63571686 | None:intergenic | 55.0% | |
| GCTCTTGAGCAACTCGTCTG+TGG | + | chr4_1:63571705-63571724 | None:intergenic | 55.0% | |
| GGCGTGTCTCATGTCTGACA+CGG | - | chr4_1:63572043-63572062 | Msa0563260:intron | 55.0% | |
| GCACACGAATCATGGGGTAG+TGG | + | chr4_1:63572236-63572255 | None:intergenic | 55.0% | |
| CGACAGGCACACGAATCATG+GGG | + | chr4_1:63572242-63572261 | None:intergenic | 55.0% | |
| CACGACAGGCACACGAATCA+TGG | + | chr4_1:63572244-63572263 | None:intergenic | 55.0% | |
| ! | TGCCCGGTATTGAACATCCC+TGG | - | chr4_1:63572519-63572538 | Msa0563260:intron | 55.0% |
| ! | GCCCGGTATTGAACATCCCT+GGG | - | chr4_1:63572520-63572539 | Msa0563260:intron | 55.0% |
| AAAGTCCGTGCTCTCGACGA+AGG | - | chr4_1:63573385-63573404 | Msa0563260:intron | 55.0% | |
| AGGAACCTTCGTCGAGAGCA+CGG | + | chr4_1:63573393-63573412 | None:intergenic | 55.0% | |
| TCTCGACGAAGGTTCCTGCA+TGG | - | chr4_1:63573396-63573415 | Msa0563260:intron | 55.0% | |
| !! | TTCGCCGATGATGACGGTGA+TGG | + | chr4_1:63571501-63571520 | Msa0563250:CDS | 55.0% |
| ACCGTCATCATCGGCGAAAC+TGG | - | chr4_1:63571503-63571522 | Msa0563260:intron | 55.0% | |
| !!! | CGATTTTGGAGTAACCGCGG+CGG | + | chr4_1:63571565-63571584 | None:intergenic | 55.0% |
| !!! | CGGCGATTTTGGAGTAACCG+CGG | + | chr4_1:63571568-63571587 | None:intergenic | 55.0% |
| ! | CGGTTGAGTGACGGCGATTT+TGG | + | chr4_1:63571579-63571598 | None:intergenic | 55.0% |
| AACGATGTCGTCGTCCGCTA+GGG | + | chr4_1:63571666-63571685 | None:intergenic | 55.0% | |
| AAACGATGTCGTCGTCCGCT+AGG | + | chr4_1:63571667-63571686 | None:intergenic | 55.0% | |
| GCTCTTGAGCAACTCGTCTG+TGG | + | chr4_1:63571705-63571724 | None:intergenic | 55.0% | |
| GGCGTGTCTCATGTCTGACA+CGG | - | chr4_1:63572043-63572062 | Msa0563260:intron | 55.0% | |
| GCACACGAATCATGGGGTAG+TGG | + | chr4_1:63572236-63572255 | None:intergenic | 55.0% | |
| CGACAGGCACACGAATCATG+GGG | + | chr4_1:63572242-63572261 | None:intergenic | 55.0% | |
| CACGACAGGCACACGAATCA+TGG | + | chr4_1:63572244-63572263 | None:intergenic | 55.0% | |
| ! | TGCCCGGTATTGAACATCCC+TGG | - | chr4_1:63572519-63572538 | Msa0563260:intron | 55.0% |
| ! | GCCCGGTATTGAACATCCCT+GGG | - | chr4_1:63572520-63572539 | Msa0563260:intron | 55.0% |
| AAAGTCCGTGCTCTCGACGA+AGG | - | chr4_1:63573385-63573404 | Msa0563260:intron | 55.0% | |
| AGGAACCTTCGTCGAGAGCA+CGG | + | chr4_1:63573393-63573412 | None:intergenic | 55.0% | |
| TCTCGACGAAGGTTCCTGCA+TGG | - | chr4_1:63573396-63573415 | Msa0563260:intron | 55.0% | |
| !! | CTTGTTTTTCCCACCCCGGC+TGG | - | chr4_1:63571398-63571417 | Msa0563260:intron | 60.0% |
| !! | TCTTTGAGACCAGCCGGGGT+GGG | + | chr4_1:63571410-63571429 | Msa0563250:intron | 60.0% |
| !! | TTCTTTGAGACCAGCCGGGG+TGG | + | chr4_1:63571411-63571430 | Msa0563250:intron | 60.0% |
| TCTCAGATGCTTCACCGCCG+CGG | - | chr4_1:63571548-63571567 | Msa0563260:intron | 60.0% | |
| ! | CGTCGTCCGCTAGGGTTAGT+TGG | + | chr4_1:63571658-63571677 | None:intergenic | 60.0% |
| CCTGTGCTCTTGCACGGGTT+CGG | - | chr4_1:63574113-63574132 | Msa0563260:CDS | 60.0% | |
| CTGTGCTCTTGCACGGGTTC+GGG | - | chr4_1:63574114-63574133 | Msa0563260:CDS | 60.0% | |
| CGTCTGCAATTCGGAGGTGG+AGG | + | chr4_1:63574478-63574497 | None:intergenic | 60.0% | |
| !! | CTTGTTTTTCCCACCCCGGC+TGG | - | chr4_1:63571398-63571417 | Msa0563260:intron | 60.0% |
| !! | TCTTTGAGACCAGCCGGGGT+GGG | + | chr4_1:63571410-63571429 | Msa0563250:intron | 60.0% |
| !! | TTCTTTGAGACCAGCCGGGG+TGG | + | chr4_1:63571411-63571430 | Msa0563250:intron | 60.0% |
| TCTCAGATGCTTCACCGCCG+CGG | - | chr4_1:63571548-63571567 | Msa0563260:intron | 60.0% | |
| ! | CGTCGTCCGCTAGGGTTAGT+TGG | + | chr4_1:63571658-63571677 | None:intergenic | 60.0% |
| CCTGTGCTCTTGCACGGGTT+CGG | - | chr4_1:63574113-63574132 | Msa0563260:CDS | 60.0% | |
| CTGTGCTCTTGCACGGGTTC+GGG | - | chr4_1:63574114-63574133 | Msa0563260:CDS | 60.0% | |
| CGTCTGCAATTCGGAGGTGG+AGG | + | chr4_1:63574478-63574497 | None:intergenic | 60.0% | |
| GACACGGCGCGGTTGAGTGA+CGG | + | chr4_1:63571588-63571607 | None:intergenic | 65.0% | |
| AGACGGAGACGGCAGCGACA+CGG | + | chr4_1:63571604-63571623 | None:intergenic | 65.0% | |
| TCGCTGCCGTCTCCGTCTCT+AGG | - | chr4_1:63571606-63571625 | Msa0563260:intron | 65.0% | |
| ! | CCGAACCCGTGCAAGAGCAC+AGG | + | chr4_1:63574116-63574135 | None:intergenic | 65.0% |
| GACACGGCGCGGTTGAGTGA+CGG | + | chr4_1:63571588-63571607 | None:intergenic | 65.0% | |
| AGACGGAGACGGCAGCGACA+CGG | + | chr4_1:63571604-63571623 | None:intergenic | 65.0% | |
| TCGCTGCCGTCTCCGTCTCT+AGG | - | chr4_1:63571606-63571625 | Msa0563260:intron | 65.0% | |
| ! | CCGAACCCGTGCAAGAGCAC+AGG | + | chr4_1:63574116-63574135 | None:intergenic | 65.0% |
| GAGACGGCAGCGACACGGCG+CGG | + | chr4_1:63571599-63571618 | None:intergenic | 75.0% | |
| GAGACGGCAGCGACACGGCG+CGG | + | chr4_1:63571599-63571618 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 63571293 | 63575390 | 63571293 | ID=Msa0563260;Name=Msa0563260 |
| chr4_1 | mRNA | 63571293 | 63575390 | 63571293 | ID=Msa0563260-mRNA-1;Parent=Msa0563260;Name=Msa0563260-mRNA-1;_AED=0.40;_eAED=0.40;_QI=144|0.83|0.85|1|0.83|1|7|0|284 |
| chr4_1 | exon | 63571293 | 63571383 | 63571293 | ID=Msa0563260-mRNA-1:exon:20221;Parent=Msa0563260-mRNA-1 |
| chr4_1 | exon | 63572132 | 63572223 | 63572132 | ID=Msa0563260-mRNA-1:exon:20220;Parent=Msa0563260-mRNA-1 |
| chr4_1 | exon | 63573218 | 63573334 | 63573218 | ID=Msa0563260-mRNA-1:exon:20219;Parent=Msa0563260-mRNA-1 |
| chr4_1 | exon | 63573454 | 63573506 | 63573454 | ID=Msa0563260-mRNA-1:exon:20218;Parent=Msa0563260-mRNA-1 |
| chr4_1 | exon | 63574062 | 63574279 | 63574062 | ID=Msa0563260-mRNA-1:exon:20217;Parent=Msa0563260-mRNA-1 |
| chr4_1 | exon | 63574883 | 63574975 | 63574883 | ID=Msa0563260-mRNA-1:exon:20216;Parent=Msa0563260-mRNA-1 |
| chr4_1 | exon | 63575056 | 63575390 | 63575056 | ID=Msa0563260-mRNA-1:exon:20215;Parent=Msa0563260-mRNA-1 |
| chr4_1 | five_prime_UTR | 63575247 | 63575390 | 63575247 | ID=Msa0563260-mRNA-1:five_prime_utr;Parent=Msa0563260-mRNA-1 |
| chr4_1 | CDS | 63575056 | 63575246 | 63575056 | ID=Msa0563260-mRNA-1:cds;Parent=Msa0563260-mRNA-1 |
| chr4_1 | CDS | 63574883 | 63574975 | 63574883 | ID=Msa0563260-mRNA-1:cds;Parent=Msa0563260-mRNA-1 |
| chr4_1 | CDS | 63574062 | 63574279 | 63574062 | ID=Msa0563260-mRNA-1:cds;Parent=Msa0563260-mRNA-1 |
| chr4_1 | CDS | 63573454 | 63573506 | 63573454 | ID=Msa0563260-mRNA-1:cds;Parent=Msa0563260-mRNA-1 |
| chr4_1 | CDS | 63573218 | 63573334 | 63573218 | ID=Msa0563260-mRNA-1:cds;Parent=Msa0563260-mRNA-1 |
| chr4_1 | CDS | 63572132 | 63572223 | 63572132 | ID=Msa0563260-mRNA-1:cds;Parent=Msa0563260-mRNA-1 |
| chr4_1 | CDS | 63571293 | 63571383 | 63571293 | ID=Msa0563260-mRNA-1:cds;Parent=Msa0563260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
