Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376090 | XP_013449858.1 | 98.107 | 317 | 6 | 0 | 1 | 317 | 1 | 317 | 0.0 | 622 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376090 | sp|Q94JW0|DOHH_ARATH | 75.884 | 311 | 75 | 0 | 7 | 317 | 4 | 314 | 2.40e-168 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376090 | A0A072U3H2 | 98.107 | 317 | 6 | 0 | 1 | 317 | 1 | 317 | 0.0 | 622 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000550 | Msa1376090 | 0.805398 | 1.361213e-49 | -8.615850e-47 |
| Msa0013050 | Msa1376090 | 0.843766 | 1.145273e-58 | -8.615850e-47 |
| Msa0024210 | Msa1376090 | 0.830220 | 3.319654e-55 | -8.615850e-47 |
| Msa0032840 | Msa1376090 | 0.830544 | 2.766750e-55 | -8.615850e-47 |
| Msa0044540 | Msa1376090 | 0.803948 | 2.732117e-49 | -8.615850e-47 |
| Msa0049650 | Msa1376090 | 0.804069 | 2.578456e-49 | -8.615850e-47 |
| Msa0074950 | Msa1376090 | 0.811173 | 7.990578e-51 | -8.615850e-47 |
| Msa0114540 | Msa1376090 | 0.819535 | 1.103754e-52 | -8.615850e-47 |
| Msa0120010 | Msa1376090 | 0.809134 | 2.198235e-50 | -8.615850e-47 |
| Msa0120020 | Msa1376090 | 0.809110 | 2.224336e-50 | -8.615850e-47 |
| Msa1360980 | Msa1376090 | -0.801901 | 7.234242e-49 | -8.615850e-47 |
| Msa1364470 | Msa1376090 | 0.815459 | 9.144074e-52 | -8.615850e-47 |
| Msa1370620 | Msa1376090 | -0.800905 | 1.157329e-48 | -8.615850e-47 |
| Msa1376090 | Msa1377540 | 0.985152 | 1.095040e-162 | -8.615850e-47 |
| Msa1376090 | Msa1386710 | -0.813786 | 2.146274e-51 | -8.615850e-47 |
| Msa1376090 | Msa1400610 | 0.871178 | 8.330962e-67 | -8.615850e-47 |
| Msa1376090 | Msa1408760 | 0.802536 | 5.355035e-49 | -8.615850e-47 |
| Msa1376090 | Msa1410430 | 0.806847 | 6.742082e-50 | -8.615850e-47 |
| Msa1376090 | Msa1410760 | 0.819279 | 1.262282e-52 | -8.615850e-47 |
| Msa1376090 | Msa1419800 | 0.809825 | 1.562816e-50 | -8.615850e-47 |
| Msa1376090 | Msa1429360 | 0.827500 | 1.511997e-54 | -8.615850e-47 |
| Msa1376090 | Msa1445390 | 0.832130 | 1.127002e-55 | -8.615850e-47 |
| Msa1376090 | Msa1445610 | 0.806270 | 8.923176e-50 | -8.615850e-47 |
| Msa1376090 | Msa1449340 | 0.843381 | 1.450722e-58 | -8.615850e-47 |
| Msa1376090 | Msa1453780 | 0.821736 | 3.444676e-53 | -8.615850e-47 |
| Msa0607340 | Msa1376090 | 0.800746 | 1.246969e-48 | -8.615850e-47 |
| Msa0609410 | Msa1376090 | 0.805290 | 1.433368e-49 | -8.615850e-47 |
| Msa0648240 | Msa1376090 | 0.805811 | 1.114897e-49 | -8.615850e-47 |
| Msa0661190 | Msa1376090 | 0.851487 | 8.594106e-61 | -8.615850e-47 |
| Msa0754720 | Msa1376090 | 0.801624 | 8.246425e-49 | -8.615850e-47 |
| Msa0756630 | Msa1376090 | 0.829743 | 4.339815e-55 | -8.615850e-47 |
| Msa0757450 | Msa1376090 | 0.805954 | 1.040054e-49 | -8.615850e-47 |
| Msa0757500 | Msa1376090 | 0.800510 | 1.393613e-48 | -8.615850e-47 |
| Msa0764130 | Msa1376090 | 0.825017 | 5.893906e-54 | -8.615850e-47 |
| Msa0796700 | Msa1376090 | -0.806394 | 8.403572e-50 | -8.615850e-47 |
| Msa0800270 | Msa1376090 | -0.803857 | 2.854023e-49 | -8.615850e-47 |
| Msa0808270 | Msa1376090 | -0.800772 | 1.232272e-48 | -8.615850e-47 |
| Msa0838260 | Msa1376090 | -0.801321 | 9.513409e-49 | -8.615850e-47 |
| Msa0136070 | Msa1376090 | -0.800131 | 1.664136e-48 | -8.615850e-47 |
| Msa0138820 | Msa1376090 | 0.808583 | 2.884466e-50 | -8.615850e-47 |
| Msa0140500 | Msa1376090 | 0.832602 | 8.609108e-56 | -8.615850e-47 |
| Msa0180790 | Msa1376090 | 0.822947 | 1.803585e-53 | -8.615850e-47 |
| Msa0192510 | Msa1376090 | -0.807736 | 4.370357e-50 | -8.615850e-47 |
| Msa0219250 | Msa1376090 | 0.806896 | 6.582787e-50 | -8.615850e-47 |
| Msa0222920 | Msa1376090 | -0.805978 | 1.028072e-49 | -8.615850e-47 |
| Msa0223410 | Msa1376090 | 0.801681 | 8.028603e-49 | -8.615850e-47 |
| Msa0229490 | Msa1376090 | 0.840672 | 7.549704e-58 | -8.615850e-47 |
| Msa0230550 | Msa1376090 | 0.824189 | 9.238033e-54 | -8.615850e-47 |
| Msa0238070 | Msa1376090 | 0.805132 | 1.547333e-49 | -8.615850e-47 |
| Msa1234560 | Msa1376090 | 0.809081 | 2.256342e-50 | -8.615850e-47 |
| Msa1245940 | Msa1376090 | 0.871417 | 6.944210e-67 | -8.615850e-47 |
| Msa1253930 | Msa1376090 | 0.827027 | 1.961965e-54 | -8.615850e-47 |
| Msa1259070 | Msa1376090 | 0.870175 | 1.779323e-66 | -8.615850e-47 |
| Msa1259590 | Msa1376090 | 0.814813 | 1.272399e-51 | -8.615850e-47 |
| Msa1264020 | Msa1376090 | -0.803075 | 4.144537e-49 | -8.615850e-47 |
| Msa1269580 | Msa1376090 | 0.832993 | 6.881396e-56 | -8.615850e-47 |
| Msa1283840 | Msa1376090 | -0.804307 | 2.299794e-49 | -8.615850e-47 |
| Msa1284260 | Msa1376090 | -0.813962 | 1.962039e-51 | -8.615850e-47 |
| Msa1296460 | Msa1376090 | 0.823957 | 1.047067e-53 | -8.615850e-47 |
| Msa1299290 | Msa1376090 | 0.801926 | 7.148556e-49 | -8.615850e-47 |
| Msa1307660 | Msa1376090 | 0.830980 | 2.163622e-55 | -8.615850e-47 |
| Msa1310770 | Msa1376090 | 0.805981 | 1.026818e-49 | -8.615850e-47 |
| Msa1327050 | Msa1376090 | -0.810898 | 9.168531e-51 | -8.615850e-47 |
| Msa1332040 | Msa1376090 | 0.833684 | 4.630680e-56 | -8.615850e-47 |
| Msa1332870 | Msa1376090 | 0.809704 | 1.659234e-50 | -8.615850e-47 |
| Msa0381610 | Msa1376090 | 0.823035 | 1.720220e-53 | -8.615850e-47 |
| Msa0390400 | Msa1376090 | 0.814791 | 1.287205e-51 | -8.615850e-47 |
| Msa0414950 | Msa1376090 | 0.857008 | 2.187264e-62 | -8.615850e-47 |
| Msa0421780 | Msa1376090 | 0.821199 | 4.584875e-53 | -8.615850e-47 |
| Msa0423040 | Msa1376090 | -0.808065 | 3.719078e-50 | -8.615850e-47 |
| Msa0436280 | Msa1376090 | 0.827937 | 1.187275e-54 | -8.615850e-47 |
| Msa0459770 | Msa1376090 | 0.831583 | 1.537587e-55 | -8.615850e-47 |
| Msa0467900 | Msa1376090 | 0.809200 | 2.128337e-50 | -8.615850e-47 |
| Msa0467960 | Msa1376090 | 0.806557 | 7.762002e-50 | -8.615850e-47 |
| Msa1004900 | Msa1376090 | 0.835346 | 1.770108e-56 | -8.615850e-47 |
| Msa1018990 | Msa1376090 | 0.803020 | 4.255146e-49 | -8.615850e-47 |
| Msa1037650 | Msa1376090 | 0.825152 | 5.477313e-54 | -8.615850e-47 |
| Msa1040400 | Msa1376090 | -0.815592 | 8.544054e-52 | -8.615850e-47 |
| Msa1069660 | Msa1376090 | 0.802163 | 6.390569e-49 | -8.615850e-47 |
| Msa1075220 | Msa1376090 | 0.820121 | 8.109911e-53 | -8.615850e-47 |
| Msa1076810 | Msa1376090 | 0.907868 | 3.180054e-81 | -8.615850e-47 |
| Msa1087510 | Msa1376090 | 0.802827 | 4.663702e-49 | -8.615850e-47 |
| Msa1100240 | Msa1376090 | 0.813833 | 2.094874e-51 | -8.615850e-47 |
| Msa0258880 | Msa1376090 | 0.810593 | 1.067245e-50 | -8.615850e-47 |
| Msa0259860 | Msa1376090 | 0.803963 | 2.712425e-49 | -8.615850e-47 |
| Msa0271960 | Msa1376090 | 0.801537 | 8.591806e-49 | -8.615850e-47 |
| Msa0277450 | Msa1376090 | -0.810760 | 9.819894e-51 | -8.615850e-47 |
| Msa0294560 | Msa1376090 | 0.833718 | 4.540967e-56 | -8.615850e-47 |
| Msa0306210 | Msa1376090 | 0.833269 | 5.875180e-56 | -8.615850e-47 |
| Msa0333720 | Msa1376090 | 0.814612 | 1.410132e-51 | -8.615850e-47 |
| Msa0335800 | Msa1376090 | -0.804036 | 2.618955e-49 | -8.615850e-47 |
| Msa1116130 | Msa1376090 | 0.841603 | 4.298744e-58 | -8.615850e-47 |
| Msa1130270 | Msa1376090 | 0.805552 | 1.263110e-49 | -8.615850e-47 |
| Msa1139000 | Msa1376090 | 0.820856 | 5.498101e-53 | -8.615850e-47 |
| Msa1145250 | Msa1376090 | 0.814680 | 1.362075e-51 | -8.615850e-47 |
| Msa1163650 | Msa1376090 | 0.962713 | 3.316876e-121 | -8.615850e-47 |
| Msa1190890 | Msa1376090 | 0.818895 | 1.543663e-52 | -8.615850e-47 |
| Msa1191890 | Msa1376090 | 0.806030 | 1.002679e-49 | -8.615850e-47 |
| Msa1193950 | Msa1376090 | 0.815819 | 7.603004e-52 | -8.615850e-47 |
| Msa1201430 | Msa1376090 | 0.808389 | 3.172926e-50 | -8.615850e-47 |
| Msa1204100 | Msa1376090 | 0.802204 | 6.269706e-49 | -8.615850e-47 |
| Msa1207470 | Msa1376090 | 0.804895 | 1.734213e-49 | -8.615850e-47 |
| Msa1208890 | Msa1376090 | 0.870126 | 1.846423e-66 | -8.615850e-47 |
| Msa1211050 | Msa1376090 | 0.806783 | 6.956150e-50 | -8.615850e-47 |
| Msa1211140 | Msa1376090 | 0.803484 | 3.409612e-49 | -8.615850e-47 |
| Msa1211150 | Msa1376090 | 0.809784 | 1.594323e-50 | -8.615850e-47 |
| Msa0553220 | Msa1376090 | 0.808896 | 2.471925e-50 | -8.615850e-47 |
| Msa0585000 | Msa1376090 | 0.801517 | 8.673914e-49 | -8.615850e-47 |
| Msa0586520 | Msa1376090 | 0.815794 | 7.700498e-52 | -8.615850e-47 |
| Msa0843780 | Msa1376090 | 0.821491 | 3.925632e-53 | -8.615850e-47 |
| Msa0867050 | Msa1376090 | 0.803724 | 3.041345e-49 | -8.615850e-47 |
| Msa0893480 | Msa1376090 | 0.816952 | 4.241664e-52 | -8.615850e-47 |
| Msa0942550 | Msa1376090 | 0.848679 | 5.256748e-60 | -8.615850e-47 |
| Msa0942560 | Msa1376090 | 0.853977 | 1.671906e-61 | -8.615850e-47 |
| Msa0970570 | Msa1376090 | 0.807133 | 5.864849e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376090 | MtrunA17_Chr7g0260951 | 98.107 | 317 | 6 | 0 | 1 | 317 | 1 | 317 | 0.0 | 622 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376090 | AT3G58180.1 | 75.884 | 311 | 75 | 0 | 7 | 317 | 4 | 314 | 2.44e-169 | 473 |
| Msa1376090 | AT3G62530.1 | 50.968 | 155 | 69 | 2 | 151 | 304 | 68 | 216 | 1.39e-41 | 144 |
| Msa1376090 | AT3G62530.1 | 36.923 | 130 | 78 | 3 | 22 | 150 | 92 | 218 | 2.71e-13 | 68.6 |
Find 82 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTTCTCGATGAGGAAAA+AGG | 0.236522 | tig0019784:-27965 | Msa1376090:CDS |
| CCTCGCACCGCCCTTATTCT+AGG | 0.251159 | tig0019784:-29058 | Msa1376090:intron |
| TGCTGCTATTGTTGATTCCT+TGG | 0.290741 | tig0019784:-27882 | Msa1376090:CDS |
| ATTCACATCTCTAAGTATAT+TGG | 0.307934 | tig0019784:+27440 | None:intergenic |
| AAGCAGCTTTGTCTTGCAAT+TGG | 0.318055 | tig0019784:+27475 | None:intergenic |
| CACGAAGCTGCATTTGCATT+AGG | 0.319693 | tig0019784:-28504 | Msa1376090:CDS |
| AAAGGGAGTAACCTAGAATA+AGG | 0.319941 | tig0019784:+29047 | None:intergenic |
| GAAGCCCTTGGTTCAATTGC+AGG | 0.331761 | tig0019784:-27387 | Msa1376090:intron |
| TGAAGCGTTCGGAGATTGGC+TGG | 0.334155 | tig0019784:+29119 | None:intergenic |
| ATAAGGGCGGTGCGAGGGGC+GGG | 0.339458 | tig0019784:+29064 | None:intergenic |
| ACGAAGCTGCATTTGCATTA+GGG | 0.353033 | tig0019784:-28503 | Msa1376090:CDS |
| ATGCTAGAATTTGAAAGATC+AGG | 0.354231 | tig0019784:-26180 | Msa1376090:CDS |
| CAAGAGCTGGCCGGTGCTGC+AGG | 0.367951 | tig0019784:+28106 | None:intergenic |
| TGCGAGGGGCGGGGCCTTTG+AGG | 0.372831 | tig0019784:+29074 | None:intergenic |
| TAAGGGCGGTGCGAGGGGCG+GGG | 0.381669 | tig0019784:+29065 | None:intergenic |
| CTTTGTGCAACAAGAGGCTC+TGG | 0.382092 | tig0019784:+26222 | None:intergenic |
| CGGAGGCGATCGGCGAGTTC+AGG | 0.384147 | tig0019784:+29303 | None:intergenic |
| GCTGAAGCACTAGGCGCTAT+TGG | 0.386313 | tig0019784:-28295 | Msa1376090:CDS |
| GCTGCTATTGTTGATTCCTT+GGG | 0.393386 | tig0019784:-27881 | Msa1376090:CDS |
| AATAAGGGCGGTGCGAGGGG+CGG | 0.393478 | tig0019784:+29063 | None:intergenic |
| AAGAGATTCATCGAATTTGT+TGG | 0.413615 | tig0019784:-28529 | Msa1376090:CDS |
| GTTCTTCAGTTGGTCAACTA+AGG | 0.420278 | tig0019784:-28084 | Msa1376090:intron |
| GAAAACGTTTAATGTACAAT+TGG | 0.420894 | tig0019784:+26043 | None:intergenic |
| GGGTGGAGAGACTTTCGTTT+CGG | 0.422867 | tig0019784:-25458 | Msa1376090:three_prime_UTR |
| ATGTTTCAATAAAGCACTCT+TGG | 0.443976 | tig0019784:+27856 | None:intergenic |
| GCTCTGAAGCGTTCGGAGAT+TGG | 0.445480 | tig0019784:+29115 | None:intergenic |
| CAATTGGAGGACGCATGAAC+AGG | 0.447305 | tig0019784:+26059 | None:intergenic |
| CTTCAAGAAGGTATACACTT+TGG | 0.450900 | tig0019784:+26259 | None:intergenic |
| GCCAGCTCTTGTTCTTCAGT+TGG | 0.457141 | tig0019784:-28094 | Msa1376090:CDS |
| GTCTGTTGATCCTGCAGCAC+CGG | 0.466493 | tig0019784:-28116 | Msa1376090:CDS |
| GAAGAGTGCTCTGAAGCGTT+CGG | 0.477233 | tig0019784:+29108 | None:intergenic |
| ACTACCTCATGGCGAACAAT+GGG | 0.478742 | tig0019784:+28417 | None:intergenic |
| GTTTCTCGAACCTCTTGAGC+TGG | 0.484293 | tig0019784:+28226 | None:intergenic |
| GCAGGATCAACAGACTTAAA+CGG | 0.491292 | tig0019784:+28124 | None:intergenic |
| AACTGAGGTTAATGCAGGTA+TGG | 0.493370 | tig0019784:+28461 | None:intergenic |
| GCTTAGGCAGCTGAAGCACT+AGG | 0.495965 | tig0019784:-28304 | Msa1376090:intron |
| GAAGCGTTCGGAGATTGGCT+GGG | 0.496757 | tig0019784:+29120 | None:intergenic |
| AACGTTTAATGTACAATTGG+AGG | 0.500470 | tig0019784:+26046 | None:intergenic |
| TAGAATAAGGGCGGTGCGAG+GGG | 0.501591 | tig0019784:+29060 | None:intergenic |
| AGAAAGTTGCTGATTGTGAC+AGG | 0.506378 | tig0019784:-25479 | Msa1376090:three_prime_UTR |
| TGCTAGAATTTGAAAGATCA+GGG | 0.509212 | tig0019784:-26179 | Msa1376090:CDS |
| GTTCCTGTGCGAGTTGCTGT+TGG | 0.510297 | tig0019784:-29149 | Msa1376090:CDS |
| TACTACCTCATGGCGAACAA+TGG | 0.510393 | tig0019784:+28416 | None:intergenic |
| AAGATCAGGGAAATCGTTTG+AGG | 0.512480 | tig0019784:-26166 | Msa1376090:intron |
| CATGAGGCTGCTGAAGCCCT+TGG | 0.515557 | tig0019784:-27399 | Msa1376090:CDS |
| GCAGCCTCATGTCTAACCAT+TGG | 0.519278 | tig0019784:+27411 | None:intergenic |
| GTTTCAGATACTTATTGAGT+TGG | 0.527166 | tig0019784:-25429 | Msa1376090:three_prime_UTR |
| CGGTGTCTGACGGAGGCGAT+CGG | 0.528678 | tig0019784:+29293 | None:intergenic |
| CGCTTCGTGCTCATCAGAGA+TGG | 0.529035 | tig0019784:-29176 | Msa1376090:CDS |
| CTAGAATAAGGGCGGTGCGA+GGG | 0.531517 | tig0019784:+29059 | None:intergenic |
| TTCTCTCTTCGCAACCTCAA+AGG | 0.536423 | tig0019784:-29088 | Msa1376090:CDS |
| GGATTCTGATCCAGCTCAAG+AGG | 0.544300 | tig0019784:-28236 | Msa1376090:CDS |
| AAGGGAGTAACCTAGAATAA+GGG | 0.546220 | tig0019784:+29048 | None:intergenic |
| ACCAACTGAAGAACAAGAGC+TGG | 0.552840 | tig0019784:+28093 | None:intergenic |
| TGACAACTTTGTGCAACAAG+AGG | 0.553059 | tig0019784:+26216 | None:intergenic |
| GACTTAAACGGAGAAATAGC+AGG | 0.567631 | tig0019784:+28136 | None:intergenic |
| TTAAGAACTGAGGTTAATGC+AGG | 0.570810 | tig0019784:+28456 | None:intergenic |
| CGCATGAGATTGAAGTGACA+AGG | 0.571112 | tig0019784:-25979 | Msa1376090:three_prime_UTR |
| AGTCCAACAGCAACTCGCAC+AGG | 0.572500 | tig0019784:+29146 | None:intergenic |
| TAAAGCACTCTTGGAACCCA+AGG | 0.578502 | tig0019784:+27865 | None:intergenic |
| GAGTGCTTTATTGAAACATG+AGG | 0.578510 | tig0019784:-27852 | Msa1376090:intron |
| ATGGCGAACAATGGGATGCA+AGG | 0.582507 | tig0019784:+28425 | None:intergenic |
| TTTGCACTTCGAAATGATGG+TGG | 0.586504 | tig0019784:-27917 | Msa1376090:CDS |
| TAGGGATTTACTTCTCGATG+AGG | 0.598291 | tig0019784:-27972 | Msa1376090:CDS |
| AGAGTGTGGGCTTATGAAGA+CGG | 0.609485 | tig0019784:+29252 | None:intergenic |
| CTGCCGAAAATTCTTCAAGA+AGG | 0.610074 | tig0019784:+26247 | None:intergenic |
| GCATCCCATTGTTCGCCATG+AGG | 0.616911 | tig0019784:-28421 | Msa1376090:intron |
| ACTGAAGAACAAGAGCTGGC+CGG | 0.622351 | tig0019784:+28097 | None:intergenic |
| AAAATTGTGAGAAGAGAGTG+TGG | 0.624309 | tig0019784:+29238 | None:intergenic |
| CTTGTCACTTCAATCTCATG+CGG | 0.624776 | tig0019784:+25980 | None:intergenic |
| CCTAGAATAAGGGCGGTGCG+AGG | 0.629672 | tig0019784:+29058 | None:intergenic |
| AATACCTGCAATTGAACCAA+GGG | 0.629721 | tig0019784:+27383 | None:intergenic |
| GCATCCAATGGTTAGACATG+AGG | 0.635787 | tig0019784:-27415 | Msa1376090:CDS |
| CAATACCTGCAATTGAACCA+AGG | 0.638670 | tig0019784:+27382 | None:intergenic |
| AGATGTGAATGAGCATCCAA+TGG | 0.641853 | tig0019784:-27427 | Msa1376090:CDS |
| GGAAAGATCATTAAGAACTG+AGG | 0.652674 | tig0019784:+28446 | None:intergenic |
| TTTGTGCAACAAGAGGCTCT+GGG | 0.657645 | tig0019784:+26223 | None:intergenic |
| AAATTGTGAGAAGAGAGTGT+GGG | 0.702881 | tig0019784:+29239 | None:intergenic |
| ACAGCAAAATAACGTAGACA+CGG | 0.706456 | tig0019784:-25956 | Msa1376090:three_prime_UTR |
| GGAGTAACCTAGAATAAGGG+CGG | 0.721114 | tig0019784:+29051 | None:intergenic |
| AGTTGCTGATTGTGACAGGG+TGG | 0.738672 | tig0019784:-25475 | Msa1376090:three_prime_UTR |
| GAAAGTTGCTGATTGTGACA+GGG | 0.739025 | tig0019784:-25478 | Msa1376090:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAGTTATTTTTATGTTA+AGG | + | tig0019784:25960-25979 | None:intergenic | 10.0% |
| !!! | GGTTTTAAATTAATAATATT+AGG | - | tig0019784:26703-26722 | Msa1376090:intron | 10.0% |
| !!! | TTTTTAATCTATCTTCTATT+TGG | - | tig0019784:27960-27979 | Msa1376090:CDS | 15.0% |
| !!! | ATTTTAACATTATTTACTTG+TGG | - | tig0019784:28955-28974 | Msa1376090:intron | 15.0% |
| !!! | TTTTTGTTTATAGTTCATTG+CGG | - | tig0019784:25842-25861 | Msa1376090:intron | 20.0% |
| !! | ATAAGTTGTTTATCCAAATA+GGG | - | tig0019784:25934-25953 | Msa1376090:intron | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAT+AGG | - | tig0019784:26062-26081 | Msa1376090:CDS | 20.0% |
| !!! | TTAAGTTGTTTATCCAAATA+GGG | - | tig0019784:26063-26082 | Msa1376090:CDS | 20.0% |
| !!! | TGCATTTATCTTTTTATACA+TGG | + | tig0019784:27421-27440 | None:intergenic | 20.0% |
| !! | TTTGAATAGTAAAAACTAAC+AGG | + | tig0019784:27670-27689 | None:intergenic | 20.0% |
| !!! | TTTTAAAGTTTTATGCTTCT+TGG | - | tig0019784:27694-27713 | Msa1376090:intron | 20.0% |
| !!! | AAATTCATGTTTTAGTGATT+TGG | + | tig0019784:28031-28050 | None:intergenic | 20.0% |
| !! | AAACATGAATTTATTTCCTT+TGG | - | tig0019784:28039-28058 | Msa1376090:intron | 20.0% |
| !!! | GTTCTATGTTTAGTAAATTT+TGG | + | tig0019784:28091-28110 | None:intergenic | 20.0% |
| !! | AATTAAATAGAAGTCAAACT+TGG | + | tig0019784:28261-28280 | None:intergenic | 20.0% |
| !! | AGTGATAAATAAAAACATTG+AGG | + | tig0019784:28339-28358 | None:intergenic | 20.0% |
| ! | AATTGAAGAGAAAAGGAAAA+GGG | + | tig0019784:25667-25686 | None:intergenic | 25.0% |
| ! | AAATTGAAGAGAAAAGGAAA+AGG | + | tig0019784:25668-25687 | None:intergenic | 25.0% |
| ! | CTTGAAAAGTTGAAGTAAAA+TGG | + | tig0019784:25818-25837 | None:intergenic | 25.0% |
| ! | GCAATGAACTATAAACAAAA+AGG | + | tig0019784:25843-25862 | None:intergenic | 25.0% |
| ! | GATAAGTTGTTTATCCAAAT+AGG | - | tig0019784:25933-25952 | Msa1376090:intron | 25.0% |
| ! | ACTAAGTTGTTTATCCAAAT+AGG | - | tig0019784:25993-26012 | Msa1376090:three_prime_UTR | 25.0% |
| ! | CTAAGTTGTTTATCCAAATA+GGG | - | tig0019784:25994-26013 | Msa1376090:three_prime_UTR | 25.0% |
| ! | TTGTTAAGTGTATTATTGCA+TGG | - | tig0019784:26106-26125 | Msa1376090:intron | 25.0% |
| !! | TAATTTGTATGTTGCTAACT+CGG | - | tig0019784:26682-26701 | Msa1376090:intron | 25.0% |
| ! | AAAAATTCAGAGAATCAAAC+AGG | + | tig0019784:27155-27174 | None:intergenic | 25.0% |
| !!! | ACTGTATTTGCTGAAATTTT+AGG | - | tig0019784:27180-27199 | Msa1376090:intron | 25.0% |
| !!! | ATTTTAGGTTGCATATGTTT+TGG | - | tig0019784:27195-27214 | Msa1376090:intron | 25.0% |
| !!! | TTTTAGGTTGCATATGTTTT+GGG | - | tig0019784:27196-27215 | Msa1376090:intron | 25.0% |
| ! | ATTCACATCTCTAAGTATAT+TGG | + | tig0019784:27257-27276 | None:intergenic | 25.0% |
| ! | ATGGTATTAATATTGCTTTG+TGG | - | tig0019784:27389-27408 | Msa1376090:CDS | 25.0% |
| !! | GTCTAAGTAAATGTTCTTTT+TGG | - | tig0019784:27489-27508 | Msa1376090:CDS | 25.0% |
| !! | GTTGCAACTTTTAGTATTTA+TGG | - | tig0019784:27544-27563 | Msa1376090:intron | 25.0% |
| ! | GTTTGCAAATAAAAAAGTAG+AGG | - | tig0019784:27630-27649 | Msa1376090:intron | 25.0% |
| !! | AAATAAAAAAGTAGAGGTGT+TGG | - | tig0019784:27636-27655 | Msa1376090:intron | 25.0% |
| ! | TTGGTTCAACTAAAAAAGTT+GGG | + | tig0019784:28072-28091 | None:intergenic | 25.0% |
| !! | TTTGGTTCAACTAAAAAAGT+TGG | + | tig0019784:28073-28092 | None:intergenic | 25.0% |
| ! | ATTAAACTGAAGTCAAACTT+GGG | + | tig0019784:28168-28187 | None:intergenic | 25.0% |
| ! | AATTAAACTGAAGTCAAACT+TGG | + | tig0019784:28169-28188 | None:intergenic | 25.0% |
| ! | ACAAAAGAACTATGTAAACA+GGG | + | tig0019784:28398-28417 | None:intergenic | 25.0% |
| !! | ATACCTTCTTGAAGAATTTT+CGG | - | tig0019784:28444-28463 | Msa1376090:CDS | 25.0% |
| ! | GAAAACGTTTAATGTACAAT+TGG | + | tig0019784:28654-28673 | None:intergenic | 25.0% |
| !! | GTACATTAAACGTTTTCTTA+TGG | - | tig0019784:28657-28676 | Msa1376090:intron | 25.0% |
| ! | ATTTCTTAACTCAAAGTTGA+TGG | - | tig0019784:28781-28800 | Msa1376090:intron | 25.0% |
| !! | AGAAACATTTTGTGATGAAT+TGG | - | tig0019784:28865-28884 | Msa1376090:intron | 25.0% |
| !! | TAAAAGGTAGACTTTACTTT+TGG | + | tig0019784:28907-28926 | None:intergenic | 25.0% |
| ! | GTTATTCTTAGTTATGATTG+AGG | + | tig0019784:29098-29117 | None:intergenic | 25.0% |
| ! | AAGCACTTTGAATTACATAT+AGG | + | tig0019784:29175-29194 | None:intergenic | 25.0% |
| GCTGTAAAATTGAAGAGAAA+AGG | + | tig0019784:25674-25693 | None:intergenic | 30.0% | |
| AATACATGTTTCATTCTGGA+AGG | + | tig0019784:25762-25781 | None:intergenic | 30.0% | |
| TTCCAGAATGAAACATGTAT+TGG | - | tig0019784:25761-25780 | Msa1376090:intron | 30.0% | |
| TTCCAATACATGTTTCATTC+TGG | + | tig0019784:25766-25785 | None:intergenic | 30.0% | |
| ! | TTTTATGTTAAGGCCCTATT+TGG | + | tig0019784:25950-25969 | None:intergenic | 30.0% |
| TGATTGATTAAGTCCCTATT+TGG | + | tig0019784:26079-26098 | None:intergenic | 30.0% | |
| AAGAGATTCATCGAATTTGT+TGG | - | tig0019784:26165-26184 | Msa1376090:intron | 30.0% | |
| TCAGAAAAGGAAGAAATAGA+AGG | + | tig0019784:26313-26332 | None:intergenic | 30.0% | |
| AAAAGTGACACATTCAGAAA+AGG | + | tig0019784:26326-26345 | None:intergenic | 30.0% | |
| TGTTTGTTTCAATCTTGCTT+AGG | - | tig0019784:26374-26393 | Msa1376090:intron | 30.0% | |
| !!! | TTCTCTTTTGAAGCATAGTT+TGG | - | tig0019784:26437-26456 | Msa1376090:intron | 30.0% |
| AACATACAAATTACTCTCTC+TGG | + | tig0019784:26675-26694 | None:intergenic | 30.0% | |
| ! | ATGTTTCAATAAAGCACTCT+TGG | + | tig0019784:26841-26860 | None:intergenic | 30.0% |
| ! | GTTTAAAAGTACGAACGATA+TGG | + | tig0019784:26988-27007 | None:intergenic | 30.0% |
| AAAGTTAAGCAGCAACATTA+AGG | + | tig0019784:27125-27144 | None:intergenic | 30.0% | |
| ! | GCATTTAAAACCACATACTA+TGG | - | tig0019784:27334-27353 | Msa1376090:intron | 30.0% |
| ! | TATATTATTGACTGCAACAG+AGG | + | tig0019784:27370-27389 | None:intergenic | 30.0% |
| CTGTTGCAGTCAATAATATA+TGG | - | tig0019784:27370-27389 | Msa1376090:intron | 30.0% | |
| !! | AAAGTTTTATGCTTCTTGGT+TGG | - | tig0019784:27698-27717 | Msa1376090:intron | 30.0% |
| GTAGATACTTCTTTGTGATT+TGG | - | tig0019784:27901-27920 | Msa1376090:CDS | 30.0% | |
| GACTAAACAGACTATATAAC+AGG | + | tig0019784:27927-27946 | None:intergenic | 30.0% | |
| TGGTTCAACTAAAAAAGTTG+GGG | + | tig0019784:28071-28090 | None:intergenic | 30.0% | |
| !! | CTTCTATTTAATTTTGCCTC+TGG | - | tig0019784:28268-28287 | Msa1376090:CDS | 30.0% |
| GACAAAAGAACTATGTAAAC+AGG | + | tig0019784:28399-28418 | None:intergenic | 30.0% | |
| ATGCTAGAATTTGAAAGATC+AGG | - | tig0019784:28514-28533 | Msa1376090:CDS | 30.0% | |
| TGCTAGAATTTGAAAGATCA+GGG | - | tig0019784:28515-28534 | Msa1376090:CDS | 30.0% | |
| ! | ACACTACTATCTTTTTCTCT+TGG | - | tig0019784:28604-28623 | Msa1376090:intron | 30.0% |
| AACGTTTAATGTACAATTGG+AGG | + | tig0019784:28651-28670 | None:intergenic | 30.0% | |
| AAAACTAGCCCTATAAAACA+AGG | - | tig0019784:28812-28831 | Msa1376090:intron | 30.0% | |
| AAACTAGCCCTATAAAACAA+GGG | - | tig0019784:28813-28832 | Msa1376090:intron | 30.0% | |
| !!! | AGTTCAACCCTTGTTTTATA+GGG | + | tig0019784:28823-28842 | None:intergenic | 30.0% |
| GTGGAAAAATTGTAAAACTC+TGG | - | tig0019784:28974-28993 | Msa1376090:intron | 30.0% | |
| TCATACTTCATACCAAGATT+TGG | - | tig0019784:29009-29028 | Msa1376090:intron | 30.0% | |
| !! | TTACATGTATTTTGCTGTGA+TGG | - | tig0019784:29118-29137 | Msa1376090:CDS | 30.0% |
| ! | AATTCAAAGTGCTTTGTTAC+AGG | - | tig0019784:29181-29200 | Msa1376090:CDS | 30.0% |
| GTTTCAGATACTTATTGAGT+TGG | - | tig0019784:29265-29284 | Msa1376090:intron | 30.0% | |
| ! | AAATTGTGAGAAGAGAGTGT+GGG | + | tig0019784:25458-25477 | None:intergenic | 35.0% |
| AAAATTGTGAGAAGAGAGTG+TGG | + | tig0019784:25459-25478 | None:intergenic | 35.0% | |
| AAGGGAGTAACCTAGAATAA+GGG | + | tig0019784:25649-25668 | None:intergenic | 35.0% | |
| AAAGGGAGTAACCTAGAATA+AGG | + | tig0019784:25650-25669 | None:intergenic | 35.0% | |
| TTGTTTATAGTTCATTGCGG+AGG | - | tig0019784:25845-25864 | Msa1376090:intron | 35.0% | |
| ! | AACCAGCTTTTCTTTCTCTT+TGG | - | tig0019784:26135-26154 | Msa1376090:intron | 35.0% |
| TTAAGAACTGAGGTTAATGC+AGG | + | tig0019784:26241-26260 | None:intergenic | 35.0% | |
| GGAAAGATCATTAAGAACTG+AGG | + | tig0019784:26251-26270 | None:intergenic | 35.0% | |
| GAAGAAATAGAAGGCTACTA+CGG | + | tig0019784:26304-26323 | None:intergenic | 35.0% | |
| ! | TTGGTCAACTAAGGTTTGTT+TGG | - | tig0019784:26619-26638 | Msa1376090:intron | 35.0% |
| TTACTTCTCGATGAGGAAAA+AGG | - | tig0019784:26729-26748 | Msa1376090:intron | 35.0% | |
| TACTTCTCGATGAGGAAAAA+GGG | - | tig0019784:26730-26749 | Msa1376090:intron | 35.0% | |
| ! | CTTTTTGCACTTCGAAATGA+TGG | - | tig0019784:26774-26793 | Msa1376090:intron | 35.0% |
| ! | GAGTGCTTTATTGAAACATG+AGG | - | tig0019784:26842-26861 | Msa1376090:intron | 35.0% |
| TTGTATGAATTGCACGTAAG+TGG | - | tig0019784:26916-26935 | Msa1376090:intron | 35.0% | |
| ACTTCACATGAGAAAACATC+AGG | - | tig0019784:26947-26966 | Msa1376090:intron | 35.0% | |
| AAAACATCAGGTCAATCTAG+AGG | - | tig0019784:26959-26978 | Msa1376090:intron | 35.0% | |
| AAACATCAGGTCAATCTAGA+GGG | - | tig0019784:26960-26979 | Msa1376090:intron | 35.0% | |
| CGTTGAACCATTATATTCGT+TGG | - | tig0019784:27007-27026 | Msa1376090:intron | 35.0% | |
| TTCTGCTCCAACGAATATAA+TGG | + | tig0019784:27017-27036 | None:intergenic | 35.0% | |
| AATACCTGCAATTGAACCAA+GGG | + | tig0019784:27314-27333 | None:intergenic | 35.0% | |
| TCACATGATTCCATAGTATG+TGG | + | tig0019784:27347-27366 | None:intergenic | 35.0% | |
| TGAGCAGTTCAACTTAACTT+AGG | - | tig0019784:27522-27541 | Msa1376090:intron | 35.0% | |
| TGACTCAGTTCATATCTGTA+TGG | - | tig0019784:27567-27586 | Msa1376090:intron | 35.0% | |
| !!! | CATATCTGTATGGTTTTGAC+TGG | - | tig0019784:27577-27596 | Msa1376090:intron | 35.0% |
| TTATGCTTCTTGGTTGGATT+TGG | - | tig0019784:27704-27723 | Msa1376090:intron | 35.0% | |
| AGCGTCTAACTATTAGTTCA+TGG | - | tig0019784:27755-27774 | Msa1376090:intron | 35.0% | |
| GCGTCTAACTATTAGTTCAT+GGG | - | tig0019784:27756-27775 | Msa1376090:intron | 35.0% | |
| !!! | GTTGGTTCTACCTTTTTACA+TGG | - | tig0019784:27821-27840 | Msa1376090:intron | 35.0% |
| ATTCGTTGGTCCATGTAAAA+AGG | + | tig0019784:27834-27853 | None:intergenic | 35.0% | |
| TAATACGTGACAAAGCCTTA+TGG | + | tig0019784:27858-27877 | None:intergenic | 35.0% | |
| !! | ATTTGGTCGACTCTTTTTAC+TGG | - | tig0019784:27977-27996 | Msa1376090:intron | 35.0% |
| ! | CTTCAAGAAGGTATACACTT+TGG | + | tig0019784:28438-28457 | None:intergenic | 35.0% |
| AAAATCTTCAGCAAGTACCA+AGG | + | tig0019784:28560-28579 | None:intergenic | 35.0% | |
| ACAGCAAAATAACGTAGACA+CGG | - | tig0019784:28738-28757 | Msa1376090:intron | 35.0% | |
| !! | AACTCAAAGTTGATGGAATC+AGG | - | tig0019784:28788-28807 | Msa1376090:intron | 35.0% |
| !!! | CAGTTCAACCCTTGTTTTAT+AGG | + | tig0019784:28824-28843 | None:intergenic | 35.0% |
| AGTGGCAGAGCTATAATAAA+AGG | + | tig0019784:28923-28942 | None:intergenic | 35.0% | |
| ATTTGGCTGACAACAGAATT+TGG | - | tig0019784:29026-29045 | Msa1376090:intron | 35.0% | |
| TTTGGCTGACAACAGAATTT+GGG | - | tig0019784:29027-29046 | Msa1376090:intron | 35.0% | |
| !! | GGGATTTTGATAAACTCTTG+AGG | - | tig0019784:29047-29066 | Msa1376090:intron | 35.0% |
| AGGTCAAGAATGAGAATAAC+TGG | - | tig0019784:29067-29086 | Msa1376090:CDS | 35.0% | |
| ! | TCGCTGATTAAGTCCCTATT+TGG | + | tig0019784:26010-26029 | None:intergenic | 40.0% |
| TGCCAAAGAGAAAGAAAAGC+TGG | + | tig0019784:26140-26159 | None:intergenic | 40.0% | |
| ACGAAGCTGCATTTGCATTA+GGG | - | tig0019784:26191-26210 | Msa1376090:CDS | 40.0% | |
| AACTGAGGTTAATGCAGGTA+TGG | + | tig0019784:26236-26255 | None:intergenic | 40.0% | |
| GACTTAAACGGAGAAATAGC+AGG | + | tig0019784:26561-26580 | None:intergenic | 40.0% | |
| GCAGGATCAACAGACTTAAA+CGG | + | tig0019784:26573-26592 | None:intergenic | 40.0% | |
| GTTCTTCAGTTGGTCAACTA+AGG | - | tig0019784:26610-26629 | Msa1376090:intron | 40.0% | |
| TAGGGATTTACTTCTCGATG+AGG | - | tig0019784:26722-26741 | Msa1376090:intron | 40.0% | |
| TTTGCACTTCGAAATGATGG+TGG | - | tig0019784:26777-26796 | Msa1376090:intron | 40.0% | |
| !! | TGCTGCTATTGTTGATTCCT+TGG | - | tig0019784:26812-26831 | Msa1376090:intron | 40.0% |
| !! | GCTGCTATTGTTGATTCCTT+GGG | - | tig0019784:26813-26832 | Msa1376090:intron | 40.0% |
| ! | AAGCAGCTTTGTCTTGCAAT+TGG | + | tig0019784:27222-27241 | None:intergenic | 40.0% |
| AGATGTGAATGAGCATCCAA+TGG | - | tig0019784:27267-27286 | Msa1376090:intron | 40.0% | |
| CAATACCTGCAATTGAACCA+AGG | + | tig0019784:27315-27334 | None:intergenic | 40.0% | |
| !! | AAAAGTAGAGGTGTTGGAGA+AGG | - | tig0019784:27642-27661 | Msa1376090:intron | 40.0% |
| GACAATCTTTCTGTTCTCGT+TGG | - | tig0019784:27803-27822 | Msa1376090:intron | 40.0% | |
| ATGGACCAACGAATACCATA+AGG | - | tig0019784:27840-27859 | Msa1376090:intron | 40.0% | |
| ! | CAAAGCCTTATGGTATTCGT+TGG | + | tig0019784:27848-27867 | None:intergenic | 40.0% |
| AGTCAAACTTGGGTAGCATT+TGG | + | tig0019784:28158-28177 | None:intergenic | 40.0% | |
| CTGCCGAAAATTCTTCAAGA+AGG | + | tig0019784:28450-28469 | None:intergenic | 40.0% | |
| TGACAACTTTGTGCAACAAG+AGG | + | tig0019784:28481-28500 | None:intergenic | 40.0% | |
| AAGATCAGGGAAATCGTTTG+AGG | - | tig0019784:28528-28547 | Msa1376090:CDS | 40.0% | |
| ! | ATCGTTTGAGGTATACACCT+TGG | - | tig0019784:28540-28559 | Msa1376090:intron | 40.0% |
| ! | CTTGTCACTTCAATCTCATG+CGG | + | tig0019784:28717-28736 | None:intergenic | 40.0% |
| TAACGTAGACACGGAAAAAC+TGG | - | tig0019784:28747-28766 | Msa1376090:intron | 40.0% | |
| ! | TTATTATAGCTCTGCCACTG+TGG | - | tig0019784:28924-28943 | Msa1376090:intron | 40.0% |
| TAAAATGTCTCCTACCACAG+TGG | + | tig0019784:28941-28960 | None:intergenic | 40.0% | |
| TTCTGTTGTCAGCCAAATCT+TGG | + | tig0019784:29024-29043 | None:intergenic | 40.0% | |
| ! | AGAAAGTTGCTGATTGTGAC+AGG | - | tig0019784:29215-29234 | Msa1376090:exon | 40.0% |
| ! | GAAAGTTGCTGATTGTGACA+GGG | - | tig0019784:29216-29235 | Msa1376090:exon | 40.0% |
| AGAGTGTGGGCTTATGAAGA+CGG | + | tig0019784:25445-25464 | None:intergenic | 45.0% | |
| TTCTCTCTTCGCAACCTCAA+AGG | - | tig0019784:25606-25625 | Msa1376090:intron | 45.0% | |
| GGAGTAACCTAGAATAAGGG+CGG | + | tig0019784:25646-25665 | None:intergenic | 45.0% | |
| CACGAAGCTGCATTTGCATT+AGG | - | tig0019784:26190-26209 | Msa1376090:CDS | 45.0% | |
| ACTACCTCATGGCGAACAAT+GGG | + | tig0019784:26280-26299 | None:intergenic | 45.0% | |
| TACTACCTCATGGCGAACAA+TGG | + | tig0019784:26281-26300 | None:intergenic | 45.0% | |
| ACCAACTGAAGAACAAGAGC+TGG | + | tig0019784:26604-26623 | None:intergenic | 45.0% | |
| ! | TAAAGCACTCTTGGAACCCA+AGG | + | tig0019784:26832-26851 | None:intergenic | 45.0% |
| GCATCCAATGGTTAGACATG+AGG | - | tig0019784:27279-27298 | Msa1376090:intron | 45.0% | |
| GTCTGTTTAGTCTCTGCATC+TGG | - | tig0019784:27935-27954 | Msa1376090:CDS | 45.0% | |
| TTTGTGCAACAAGAGGCTCT+GGG | + | tig0019784:28474-28493 | None:intergenic | 45.0% | |
| CGCATGAGATTGAAGTGACA+AGG | - | tig0019784:28715-28734 | Msa1376090:intron | 45.0% | |
| !!! | GTTTTAAATTAATAATATTA+GGG | - | tig0019784:26704-26723 | Msa1376090:intron | 5.0% |
| !! | GAAGAGTGCTCTGAAGCGTT+CGG | + | tig0019784:25589-25608 | None:intergenic | 50.0% |
| ATGGCGAACAATGGGATGCA+AGG | + | tig0019784:26272-26291 | None:intergenic | 50.0% | |
| GCTACTACGGTACTACCTCA+TGG | + | tig0019784:26291-26310 | None:intergenic | 50.0% | |
| GGATTCTGATCCAGCTCAAG+AGG | - | tig0019784:26458-26477 | Msa1376090:intron | 50.0% | |
| GTTTCTCGAACCTCTTGAGC+TGG | + | tig0019784:26471-26490 | None:intergenic | 50.0% | |
| ACTGAAGAACAAGAGCTGGC+CGG | + | tig0019784:26600-26619 | None:intergenic | 50.0% | |
| GCCAGCTCTTGTTCTTCAGT+TGG | - | tig0019784:26600-26619 | Msa1376090:intron | 50.0% | |
| GCAGCCTCATGTCTAACCAT+TGG | + | tig0019784:27286-27305 | None:intergenic | 50.0% | |
| GAAGCCCTTGGTTCAATTGC+AGG | - | tig0019784:27307-27326 | Msa1376090:intron | 50.0% | |
| AAAGTTGGGGTAGCTGCCAA+AGG | + | tig0019784:28058-28077 | None:intergenic | 50.0% | |
| CTGTCATGTGACTCTACCAG+AGG | + | tig0019784:28287-28306 | None:intergenic | 50.0% | |
| CTTTGTGCAACAAGAGGCTC+TGG | + | tig0019784:28475-28494 | None:intergenic | 50.0% | |
| CAATTGGAGGACGCATGAAC+AGG | + | tig0019784:28638-28657 | None:intergenic | 50.0% | |
| ! | TATAGCTCTGCCACTGTGGT+AGG | - | tig0019784:28928-28947 | Msa1376090:intron | 50.0% |
| ! | AGTTGCTGATTGTGACAGGG+TGG | - | tig0019784:29219-29238 | Msa1376090:exon | 50.0% |
| GGGTGGAGAGACTTTCGTTT+CGG | - | tig0019784:29236-29255 | Msa1376090:five_prime_UTR | 50.0% | |
| !! | GAAGACGGTGGCGGAATTGA+CGG | + | tig0019784:25430-25449 | None:intergenic | 55.0% |
| TGGGCTTATGAAGACGGTGG+CGG | + | tig0019784:25439-25458 | None:intergenic | 55.0% | |
| GTGTGGGCTTATGAAGACGG+TGG | + | tig0019784:25442-25461 | None:intergenic | 55.0% | |
| CGCTTCGTGCTCATCAGAGA+TGG | - | tig0019784:25518-25537 | Msa1376090:intron | 55.0% | |
| GTTCCTGTGCGAGTTGCTGT+TGG | - | tig0019784:25545-25564 | Msa1376090:intron | 55.0% | |
| AGTCCAACAGCAACTCGCAC+AGG | + | tig0019784:25551-25570 | None:intergenic | 55.0% | |
| ! | GAAGCGTTCGGAGATTGGCT+GGG | + | tig0019784:25577-25596 | None:intergenic | 55.0% |
| ! | TGAAGCGTTCGGAGATTGGC+TGG | + | tig0019784:25578-25597 | None:intergenic | 55.0% |
| !! | GCTCTGAAGCGTTCGGAGAT+TGG | + | tig0019784:25582-25601 | None:intergenic | 55.0% |
| TAGAATAAGGGCGGTGCGAG+GGG | + | tig0019784:25637-25656 | None:intergenic | 55.0% | |
| CTAGAATAAGGGCGGTGCGA+GGG | + | tig0019784:25638-25657 | None:intergenic | 55.0% | |
| GCATCCCATTGTTCGCCATG+AGG | - | tig0019784:26273-26292 | Msa1376090:intron | 55.0% | |
| ! | GCTTAGGCAGCTGAAGCACT+AGG | - | tig0019784:26390-26409 | Msa1376090:intron | 55.0% |
| ! | GCTGAAGCACTAGGCGCTAT+TGG | - | tig0019784:26399-26418 | Msa1376090:intron | 55.0% |
| GTCTGTTGATCCTGCAGCAC+CGG | - | tig0019784:26578-26597 | Msa1376090:intron | 55.0% | |
| ! | TTGACGGTGGCGGTGTCTGA+CGG | + | tig0019784:25414-25433 | None:intergenic | 60.0% |
| CCTAGAATAAGGGCGGTGCG+AGG | + | tig0019784:25639-25658 | None:intergenic | 60.0% | |
| CCTCGCACCGCCCTTATTCT+AGG | - | tig0019784:25636-25655 | Msa1376090:intron | 60.0% | |
| CATGAGGCTGCTGAAGCCCT+TGG | - | tig0019784:27295-27314 | Msa1376090:intron | 60.0% | |
| CGGTGTCTGACGGAGGCGAT+CGG | + | tig0019784:25404-25423 | None:intergenic | 65.0% | |
| !! | GGTGGCGGAATTGACGGTGG+CGG | + | tig0019784:25424-25443 | None:intergenic | 65.0% |
| !! | GACGGTGGCGGAATTGACGG+TGG | + | tig0019784:25427-25446 | None:intergenic | 65.0% |
| AATAAGGGCGGTGCGAGGGG+CGG | + | tig0019784:25634-25653 | None:intergenic | 65.0% | |
| CGGAGGCGATCGGCGAGTTC+AGG | + | tig0019784:25394-25413 | None:intergenic | 70.0% | |
| ! | ACGGTGGCGGTGTCTGACGG+AGG | + | tig0019784:25411-25430 | None:intergenic | 70.0% |
| ATAAGGGCGGTGCGAGGGGC+GGG | + | tig0019784:25633-25652 | None:intergenic | 70.0% | |
| !! | CAAGAGCTGGCCGGTGCTGC+AGG | + | tig0019784:26591-26610 | None:intergenic | 70.0% |
| TGCGAGGGGCGGGGCCTTTG+AGG | + | tig0019784:25623-25642 | None:intergenic | 75.0% | |
| TAAGGGCGGTGCGAGGGGCG+GGG | + | tig0019784:25632-25651 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019784 | gene | 25385 | 29331 | 25385 | ID=Msa1376090;Name=Msa1376090 |
| tig0019784 | mRNA | 25385 | 29331 | 25385 | ID=Msa1376090-mRNA-1;Parent=Msa1376090;Name=Msa1376090-mRNA-1;_AED=0.16;_eAED=0.16;_QI=76|1|1|1|0.75|0.66|9|232|317 |
| tig0019784 | exon | 25385 | 25513 | 25385 | ID=Msa1376090-mRNA-1:exon:4963;Parent=Msa1376090-mRNA-1 |
| tig0019784 | exon | 25948 | 26083 | 25948 | ID=Msa1376090-mRNA-1:exon:4962;Parent=Msa1376090-mRNA-1 |
| tig0019784 | exon | 26167 | 26285 | 26167 | ID=Msa1376090-mRNA-1:exon:4961;Parent=Msa1376090-mRNA-1 |
| tig0019784 | exon | 27388 | 27514 | 27388 | ID=Msa1376090-mRNA-1:exon:4960;Parent=Msa1376090-mRNA-1 |
| tig0019784 | exon | 27853 | 27991 | 27853 | ID=Msa1376090-mRNA-1:exon:4959;Parent=Msa1376090-mRNA-1 |
| tig0019784 | exon | 28085 | 28320 | 28085 | ID=Msa1376090-mRNA-1:exon:4958;Parent=Msa1376090-mRNA-1 |
| tig0019784 | exon | 28422 | 28555 | 28422 | ID=Msa1376090-mRNA-1:exon:4957;Parent=Msa1376090-mRNA-1 |
| tig0019784 | exon | 29059 | 29271 | 29059 | ID=Msa1376090-mRNA-1:exon:4956;Parent=Msa1376090-mRNA-1 |
| tig0019784 | exon | 29303 | 29331 | 29303 | ID=Msa1376090-mRNA-1:exon:4955;Parent=Msa1376090-mRNA-1 |
| tig0019784 | five_prime_UTR | 29303 | 29331 | 29303 | ID=Msa1376090-mRNA-1:five_prime_utr;Parent=Msa1376090-mRNA-1 |
| tig0019784 | five_prime_UTR | 29225 | 29271 | 29225 | ID=Msa1376090-mRNA-1:five_prime_utr;Parent=Msa1376090-mRNA-1 |
| tig0019784 | CDS | 29059 | 29224 | 29059 | ID=Msa1376090-mRNA-1:cds;Parent=Msa1376090-mRNA-1 |
| tig0019784 | CDS | 28422 | 28555 | 28422 | ID=Msa1376090-mRNA-1:cds;Parent=Msa1376090-mRNA-1 |
| tig0019784 | CDS | 28085 | 28320 | 28085 | ID=Msa1376090-mRNA-1:cds;Parent=Msa1376090-mRNA-1 |
| tig0019784 | CDS | 27853 | 27991 | 27853 | ID=Msa1376090-mRNA-1:cds;Parent=Msa1376090-mRNA-1 |
| tig0019784 | CDS | 27388 | 27514 | 27388 | ID=Msa1376090-mRNA-1:cds;Parent=Msa1376090-mRNA-1 |
| tig0019784 | CDS | 26167 | 26285 | 26167 | ID=Msa1376090-mRNA-1:cds;Parent=Msa1376090-mRNA-1 |
| tig0019784 | CDS | 26051 | 26083 | 26051 | ID=Msa1376090-mRNA-1:cds;Parent=Msa1376090-mRNA-1 |
| tig0019784 | three_prime_UTR | 25948 | 26050 | 25948 | ID=Msa1376090-mRNA-1:three_prime_utr;Parent=Msa1376090-mRNA-1 |
| tig0019784 | three_prime_UTR | 25385 | 25513 | 25385 | ID=Msa1376090-mRNA-1:three_prime_utr;Parent=Msa1376090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
