AlfalfaGEDB | Msa1163650

M. sativa cultivar zhongmu-4 / Msa1163650

KEGG: K06072
GO: GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009987 GO:0010467 GO:0016491 GO:0016705 GO:0018193 GO:0018205 GO:0019135 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0055114 GO:0071704 GO:1901564
PFAM: PF13646.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163650	XP_013449858.1	98.107	317	6	0	1	317	1	317	0.0	622

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163650	sp\|Q94JW0\|DOHH_ARATH	75.884	311	75	0	7	317	4	314	2.40e-168	473

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163650	A0A072U3H2	98.107	317	6	0	1	317	1	317	0.0	622

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa1163650	0.823679	1.216752e-53	-8.615850e-47
Msa0013050	Msa1163650	0.818403	1.996591e-52	-8.615850e-47
Msa0014570	Msa1163650	-0.813452	2.541812e-51	-8.615850e-47
Msa0024210	Msa1163650	0.859144	5.069033e-63	-8.615850e-47
Msa0032840	Msa1163650	0.803872	2.832713e-49	-8.615850e-47
Msa0033110	Msa1163650	-0.806526	7.881657e-50	-8.615850e-47
Msa0033260	Msa1163650	-0.803706	3.067083e-49	-8.615850e-47
Msa0036130	Msa1163650	-0.803877	2.825874e-49	-8.615850e-47
Msa0039900	Msa1163650	0.808122	3.617157e-50	-8.615850e-47
Msa0044540	Msa1163650	0.805826	1.106775e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163650	MtrunA17_Chr7g0260951	98.107	317	6	0	1	317	1	317	0.0	622

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163650	AT3G58180.1	75.884	311	75	0	7	317	4	314	2.44e-169	473
Msa1163650	AT3G62530.1	50.968	155	69	2	151	304	68	216	1.39e-41	144
Msa1163650	AT3G62530.1	36.923	130	78	3	22	150	92	218	2.71e-13	68.6

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Find 82 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGTGAGAAGAGAGTG+TGG	0.624309	7_4:-54998807	None:intergenic
AAAGGGAGTAACCTAGAATA+AGG	0.319941	7_4:-54998998	None:intergenic
AAATTGTGAGAAGAGAGTGT+GGG	0.702881	7_4:-54998806	None:intergenic
AACGTTTAATGTACAATTGG+AGG	0.500470	7_4:-55001998	None:intergenic
AACTGAGGTTAATGCAGGTA+TGG	0.493370	7_4:-54999584	None:intergenic
AAGAGATTCATCGAATTTGT+TGG	0.413615	7_4:+54999516	Msa1163650:CDS
AAGATCAGGGAAATCGTTTG+AGG	0.512480	7_4:+55001878	Msa1163650:CDS
AAGCAGCTTTGTCTTGCAAT+TGG	0.318055	7_4:-55000569	None:intergenic
AAGGGAGTAACCTAGAATAA+GGG	0.546220	7_4:-54998997	None:intergenic
AATAAGGGCGGTGCGAGGGG+CGG	0.393478	7_4:-54998982	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCTGTAAAATTGAAGAGAAA+AGG	-	chr7_4:54999025-54999044	None:intergenic	30.0%
AATACATGTTTCATTCTGGA+AGG	-	chr7_4:54999113-54999132	None:intergenic	30.0%
TTCCAGAATGAAACATGTAT+TGG	+	chr7_4:54999112-54999131	Msa1163650:intron	30.0%
TTCCAATACATGTTTCATTC+TGG	-	chr7_4:54999117-54999136	None:intergenic	30.0%
GCTAAGTTGTTTATCCAAAT+AGG	+	chr7_4:54999344-54999363	Msa1163650:intron	30.0%
TGATTGATTAAGTCCCTATT+TGG	-	chr7_4:54999430-54999449	None:intergenic	30.0%
AAGAGATTCATCGAATTTGT+TGG	+	chr7_4:54999516-54999535	Msa1163650:CDS	30.0%
TCAGAAAAGGAAGAAATAGA+AGG	-	chr7_4:54999664-54999683	None:intergenic	30.0%
AAAAGTGACACATTCAGAAA+AGG	-	chr7_4:54999677-54999696	None:intergenic	30.0%
TGTTTGTTTCAATCTTGCTT+AGG	+	chr7_4:54999724-54999743	Msa1163650:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	54998736	55002681	54998736	ID=Msa1163650;Name=Msa1163650
chr7_4	mRNA	54998736	55002681	54998736	ID=Msa1163650-mRNA-1;Parent=Msa1163650;Name=Msa1163650-mRNA-1;_AED=0.17;_eAED=0.17;_QI=76\|1\|1\|1\|0.75\|0.66\|9\|232\|317
chr7_4	exon	54998736	54998764	54998736	ID=Msa1163650-mRNA-1:exon:16070;Parent=Msa1163650-mRNA-1
chr7_4	exon	54998796	54999008	54998796	ID=Msa1163650-mRNA-1:exon:16071;Parent=Msa1163650-mRNA-1
chr7_4	exon	54999512	54999645	54999512	ID=Msa1163650-mRNA-1:exon:16072;Parent=Msa1163650-mRNA-1
chr7_4	exon	54999746	54999981	54999746	ID=Msa1163650-mRNA-1:exon:16073;Parent=Msa1163650-mRNA-1
chr7_4	exon	55000075	55000213	55000075	ID=Msa1163650-mRNA-1:exon:16074;Parent=Msa1163650-mRNA-1
chr7_4	exon	55000552	55000678	55000552	ID=Msa1163650-mRNA-1:exon:16075;Parent=Msa1163650-mRNA-1
chr7_4	exon	55001781	55001899	55001781	ID=Msa1163650-mRNA-1:exon:16076;Parent=Msa1163650-mRNA-1
chr7_4	exon	55001983	55002118	55001983	ID=Msa1163650-mRNA-1:exon:16077;Parent=Msa1163650-mRNA-1
chr7_4	exon	55002553	55002681	55002553	ID=Msa1163650-mRNA-1:exon:16078;Parent=Msa1163650-mRNA-1
chr7_4	five_prime_UTR	54998736	54998764	54998736	ID=Msa1163650-mRNA-1:five_prime_utr;Parent=Msa1163650-mRNA-1
chr7_4	five_prime_UTR	54998796	54998842	54998796	ID=Msa1163650-mRNA-1:five_prime_utr;Parent=Msa1163650-mRNA-1
chr7_4	CDS	54998843	54999008	54998843	ID=Msa1163650-mRNA-1:cds;Parent=Msa1163650-mRNA-1
chr7_4	CDS	54999512	54999645	54999512	ID=Msa1163650-mRNA-1:cds;Parent=Msa1163650-mRNA-1
chr7_4	CDS	54999746	54999981	54999746	ID=Msa1163650-mRNA-1:cds;Parent=Msa1163650-mRNA-1
chr7_4	CDS	55000075	55000213	55000075	ID=Msa1163650-mRNA-1:cds;Parent=Msa1163650-mRNA-1
chr7_4	CDS	55000552	55000678	55000552	ID=Msa1163650-mRNA-1:cds;Parent=Msa1163650-mRNA-1
chr7_4	CDS	55001781	55001899	55001781	ID=Msa1163650-mRNA-1:cds;Parent=Msa1163650-mRNA-1
chr7_4	CDS	55001983	55002015	55001983	ID=Msa1163650-mRNA-1:cds;Parent=Msa1163650-mRNA-1
chr7_4	three_prime_UTR	55002016	55002118	55002016	ID=Msa1163650-mRNA-1:three_prime_utr;Parent=Msa1163650-mRNA-1
chr7_4	three_prime_UTR	55002553	55002681	55002553	ID=Msa1163650-mRNA-1:three_prime_utr;Parent=Msa1163650-mRNA-1

Gene Sequence

>Msa1163650

ATGTCTGCGAATTCGCTAAACGACGTCGCTTCGTGCTCATCAGAGATGGAGAAGTTCCTGTGCGAGTTGCTGTTGGACTCAACCCAGCCAATCTCCGAACGCTTCAGAGCACTCTTCTCTCTTCGCAACCTCAAAGGCCCCGCCCCTCGCACCGCCCTTATTCTAGCGACAAGAGATTCATCGAATTTGTTGGCACACGAAGCTGCATTTGCATTAGGGCAAATGCAAGAACTCGAAGCCATACCTGCATTAACCTCAGTTCTTAATGATCTTTCCTTGCATCCCATTGTTCGCCATGAGGCAGCTGAAGCACTAGGCGCTATTGGTTCAGATAGTAATGTTTCTCTTTTGAAGCATAGTTTGGATTCTGATCCAGCTCAAGAGGTTCGAGAAACATGTGAATTAGCTCTTCAACGTATTCTCAATTTAAAACATGCTGCTGCTACTGATGATTCGACAGCACCTGCTATTTCTCCGTTTAAGTCTGTTGATCCTGCAGCACCGGCCAGCTCTTGTTCTTCAGTTGGTCAACTAAGGGATTTACTTCTCGATGAGGAAAAAGGGATGTATGAGCGCTATGCAGCTCTTTTTGCACTTCGAAATGATGGTGGAAATGAAGCTGTTGCTGCTATTGTTGATTCCTTGGGTTCCAAGAGTGCTTTATTGAAACATGAGGTTGCATATGTTTTGGGCCAATTGCAAGACAAAGCTGCTTCAGCTGCTCTATCCAATATACTTAGAGATGTGAATGAGCATCCAATGGTTAGACATGAGGCTGCTGAAGCCCTTGGTTCAATTGCAGATGACCAAAGTGTATACCTTCTTGAAGAATTTTCGGCAGACCCAGAGCCTCTTGTTGCACAAAGTTGTCAAGTTGCTCTAAGCATGCTAGAATTTGAAAGATCAGGGAAATCGTTTGAGTTCCTGTTCATGCGTCCTCCAATTGTACATTAA

Protein sequence

>Msa1163650

MSANSLNDVASCSSEMEKFLCELLLDSTQPISERFRALFSLRNLKGPAPRTALILATRDSSNLLAHEAAFALGQMQELEAIPALTSVLNDLSLHPIVRHEAAEALGAIGSDSNVSLLKHSLDSDPAQEVRETCELALQRILNLKHAAATDDSTAPAISPFKSVDPAAPASSCSSVGQLRDLLLDEEKGMYERYAALFALRNDGGNEAVAAIVDSLGSKSALLKHEVAYVLGQLQDKAASAALSNILRDVNEHPMVRHEAAEALGSIADDQSVYLLEEFSADPEPLVAQSCQVALSMLEFERSGKSFEFLFMRPPIVH*