AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0460590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0460590 MtrunA17_Chr3g0109931 88.500 200 17 1 20 213 1 200 1.99e-128 360
Msa0460590 MtrunA17_Chr8g0375391 47.368 114 54 3 101 213 170 278 1.93e-26 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0460590 AT2G01990.1 37.019 208 100 6 30 213 13 213 1.48e-32 117
Msa0460590 AT2G01990.2 37.019 208 100 6 30 213 44 244 4.45e-32 117
Msa0460590 AT1G14630.1 37.173 191 105 5 30 213 44 226 9.65e-29 107
Msa0460590 AT5G48720.2 41.860 86 35 3 132 213 226 300 1.86e-11 62.4
Msa0460590 AT5G48720.4 41.860 86 35 3 132 213 226 300 1.86e-11 62.4
Msa0460590 AT5G48720.1 41.860 86 35 3 132 213 192 266 2.12e-11 62.0
Msa0460590 AT5G48720.3 41.860 86 35 3 132 213 192 266 2.12e-11 62.0

Find 66 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTACATTTATGCATATT+TGG 0.148666 3_3:+58055627 None:intergenic
AACCGTGGTTATGGTATTTC+AGG 0.166700 3_3:-58055946 Msa0460590:CDS
TATACATACCTTGAAGTAAT+TGG 0.169435 3_3:+58056672 None:intergenic
GTGAAACTTCATTAAAATTA+TGG 0.232753 3_3:+58055773 None:intergenic
CAATCACTGGCTGGGATATT+TGG 0.233908 3_3:-58056904 Msa0460590:CDS
CTTTCCTCCATCCATGGAAT+TGG 0.278795 3_3:-58057436 Msa0460590:CDS
CACTTAATTAGTGCATGTTT+AGG 0.281358 3_3:-58055828 Msa0460590:three_prime_UTR
ACTTAATTAGTGCATGTTTA+GGG 0.320520 3_3:-58055827 Msa0460590:three_prime_UTR
GAGGCTCCATTACCATTATT+AGG 0.327547 3_3:-58055882 Msa0460590:CDS
TCAACCTTTAGTCCTAATAA+TGG 0.328259 3_3:+58055870 None:intergenic
GGATGTGGAATTGGCTTTGA+TGG 0.358593 3_3:+58056009 None:intergenic
TGTATTTCAAACCGTGGTTA+TGG 0.360210 3_3:-58055955 Msa0460590:CDS
CACTTCCTTTCCTCCATCCA+TGG 0.365437 3_3:-58057442 Msa0460590:CDS
ATGGTGTGTCACCGTAATTT+TGG 0.366284 3_3:+58055737 None:intergenic
ACAGCCACAGGATGTGGAAT+TGG 0.391650 3_3:+58056000 None:intergenic
ACTCATTCAGATTTAACTCT+TGG 0.392699 3_3:-58057402 Msa0460590:intron
CCAGGTTTCACCAGCTCAAA+TGG 0.402015 3_3:+58056087 None:intergenic
GAGTTAGTTTCACGAAATTA+CGG 0.402709 3_3:-58055801 Msa0460590:three_prime_UTR
CTGGATGCACAACTTCTTTG+AGG 0.410410 3_3:+58056296 None:intergenic
ATGGACTCATCATCATTTGA+TGG 0.411072 3_3:+58056028 None:intergenic
ATTACCATTATTAGGACTAA+AGG 0.415904 3_3:-58055874 Msa0460590:CDS
GTTTCCCCTTCAACTCCTCC+AGG 0.422860 3_3:+58056069 None:intergenic
GAAGAAAATGTTGGAAATAG+AGG 0.428289 3_3:+58056704 None:intergenic
CCATTTGAGCTGGTGAAACC+TGG 0.428678 3_3:-58056087 Msa0460590:CDS
ATACATACCTTGAAGTAATT+GGG 0.433333 3_3:+58056673 None:intergenic
AAGAAGTGGCAGCACTTACT+AGG 0.434363 3_3:-58055921 Msa0460590:CDS
TTCAAATTCAATCACTAGCT+AGG 0.440011 3_3:+58055549 None:intergenic
TTGAAGATGCAATCACTGGC+TGG 0.441092 3_3:-58056913 Msa0460590:CDS
TTTAGTCCTAATAATGGTAA+TGG 0.443297 3_3:+58055876 None:intergenic
TCAAATTCAATCACTAGCTA+GGG 0.443414 3_3:+58055550 None:intergenic
TATGATCTTGTGATGATGAT+AGG 0.443790 3_3:+58056348 None:intergenic
GTGAAACCTGGAGGAGTTGA+AGG 0.448286 3_3:-58056075 Msa0460590:CDS
AACCTACTCTCAAGATCAAA+AGG 0.460972 3_3:-58056861 Msa0460590:intron
TTGGTATAAACTATATATGA+AGG 0.462472 3_3:+58055646 None:intergenic
AAAGCAGCCCAATTACTTCA+AGG 0.465374 3_3:-58056680 Msa0460590:intron
TCTTCTACAGCCACAGGATG+TGG 0.472074 3_3:+58055994 None:intergenic
CACTTACTAGGATTCAAACT+AGG 0.484716 3_3:-58055909 Msa0460590:CDS
GATTCCAATGTCCAATTCCA+TGG 0.497543 3_3:+58057425 None:intergenic
CCACGAGTTCGCCACAATCA+TGG 0.512350 3_3:+58055718 None:intergenic
ACTTACTAGGATTCAAACTA+GGG 0.519902 3_3:-58055908 Msa0460590:CDS
GCTGCTTTCGAAGAAAATGT+TGG 0.526003 3_3:+58056695 None:intergenic
AGGATTCAAACTAGGGGTAG+AGG 0.539013 3_3:-58055901 Msa0460590:CDS
TAACCACGGTTTGAAATACA+TGG 0.544046 3_3:+58055958 None:intergenic
CAATTCCATGGATGGAGGAA+AGG 0.547863 3_3:+58057437 None:intergenic
TGAAGATGCAATCACTGGCT+GGG 0.560320 3_3:-58056912 Msa0460590:CDS
AATAGCTTATCCATTTGAGC+TGG 0.561873 3_3:-58056097 Msa0460590:CDS
CCATCCATGGAATTGGACAT+TGG 0.563805 3_3:-58057429 Msa0460590:CDS
ATAGAATCTTCTACAGCCAC+AGG 0.564847 3_3:+58055988 None:intergenic
CCATGATTGTGGCGAACTCG+TGG 0.570273 3_3:-58055718 Msa0460590:three_prime_UTR
TAAAGGTTGAATTAAAGTGA+AGG 0.576780 3_3:-58055857 Msa0460590:exon
CCAATGTCCAATTCCATGGA+TGG 0.577208 3_3:+58057429 None:intergenic
TGAAACCTGGAGGAGTTGAA+GGG 0.578494 3_3:-58056074 Msa0460590:CDS
TATCTTGAAGATGCAATCAC+TGG 0.588676 3_3:-58056917 Msa0460590:CDS
TGGTATTTCAGGAAAAGAAG+TGG 0.597344 3_3:-58055935 Msa0460590:CDS
TTTGCAGCTGATACATCAAG+TGG 0.606270 3_3:-58056941 Msa0460590:intron
CAAATTCAATCACTAGCTAG+GGG 0.627873 3_3:+58055551 None:intergenic
TTCCTGAAATACCATAACCA+CGG 0.632367 3_3:+58055944 None:intergenic
AAAGCCAATTCCACATCCTG+TGG 0.636787 3_3:-58056004 Msa0460590:CDS
CATCCATGTATTTCAAACCG+TGG 0.645090 3_3:-58055961 Msa0460590:CDS
CAAAGAAGTTGTGCATCCAG+AGG 0.646002 3_3:-58056293 Msa0460590:CDS
ACGGTGACACACCATGATTG+TGG 0.648803 3_3:-58055729 Msa0460590:three_prime_UTR
ATGTCCAATTCCATGGATGG+AGG 0.652406 3_3:+58057432 None:intergenic
GAAACCTGGAGGAGTTGAAG+GGG 0.660694 3_3:-58056073 Msa0460590:CDS
TTTGAGCTGGTGAAACCTGG+AGG 0.684329 3_3:-58056084 Msa0460590:CDS
AAATTCAATCACTAGCTAGG+GGG 0.691101 3_3:+58055552 None:intergenic
CTTACTAGGATTCAAACTAG+GGG 0.738551 3_3:-58055907 Msa0460590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTCAATTTGAATTA+GGG + chr3_3:58056993-58057012 None:intergenic 10.0%
!! TTGATTATAATTATATCAAA+TGG + chr3_3:58057419-58057438 None:intergenic 10.0%
!!! TAATTATAATCAAGTTTTTT+TGG - chr3_3:58057426-58057445 Msa0460590:CDS 10.0%
!! ATAAAAAAGGAAAAAATAAT+AGG - chr3_3:58057522-58057541 Msa0460590:intron 10.0%
!!! TAAATAAAAGGTTTAATTTT+CGG + chr3_3:58057644-58057663 None:intergenic 10.0%
!! ACTCATAAAAATTAAATAAA+AGG + chr3_3:58057656-58057675 None:intergenic 10.0%
!! TTAGCATTTAATAAAAAATT+TGG + chr3_3:58057715-58057734 None:intergenic 10.0%
!! TAATAAAAAAACAAAATGTT+TGG - chr3_3:58058666-58058685 Msa0460590:intron 10.0%
!! TATTTAACGAAAAGTAATAA+TGG - chr3_3:58055574-58055593 Msa0460590:three_prime_UTR 15.0%
!! TAATATTTAACGAATTAATG+AGG - chr3_3:58055745-58055764 Msa0460590:three_prime_UTR 15.0%
!! GAAATTTCATAATTAGTTAA+GGG - chr3_3:58055903-58055922 Msa0460590:CDS 15.0%
!!! CTTTTTCTTAACATTTAATT+TGG + chr3_3:58055974-58055993 None:intergenic 15.0%
!! AAAATAAAACTGTGAAATTA+AGG - chr3_3:58056389-58056408 Msa0460590:intron 15.0%
!! TGAATTTAACATTTACTAAA+CGG + chr3_3:58056570-58056589 None:intergenic 15.0%
!!! TTTTTTTCAATTTGAATTAG+GGG + chr3_3:58056992-58057011 None:intergenic 15.0%
!!! CATTTTTTTCAATTTGAATT+AGG + chr3_3:58056994-58057013 None:intergenic 15.0%
!! GCAAAAAAATAATGAATAAT+TGG + chr3_3:58057184-58057203 None:intergenic 15.0%
!! AAAAATCTTTATCATAGAAA+AGG - chr3_3:58057288-58057307 Msa0460590:intron 15.0%
!! ATTATAATTATATCAAATGG+TGG + chr3_3:58057416-58057435 None:intergenic 15.0%
!!! CAATCATTTGAAAATAATTT+TGG - chr3_3:58058817-58058836 Msa0460590:intron 15.0%
!!! TAGGTTATTATTTCTAATTT+TGG - chr3_3:58058949-58058968 Msa0460590:intron 15.0%
!!! ATAATTTTAATGAAGTTTCA+CGG - chr3_3:58059633-58059652 Msa0460590:intron 15.0%
!!! TGTAATTTTTACCAAAATTA+CGG - chr3_3:58059656-58059675 Msa0460590:intron 15.0%
!! CTAATTATGAAATTTCGTAT+TGG + chr3_3:58055899-58055918 None:intergenic 20.0%
!! CGAAATTTCATAATTAGTTA+AGG - chr3_3:58055902-58055921 Msa0460590:CDS 20.0%
!!! TTAACATTTAATTTGGTACA+AGG + chr3_3:58055967-58055986 None:intergenic 20.0%
!!! TCAAAATTTTGTAGTTTAGT+AGG - chr3_3:58056316-58056335 Msa0460590:CDS 20.0%
!! ATATAAATTATAATGTGACG+AGG + chr3_3:58056519-58056538 None:intergenic 20.0%
!! TTACCTCTATAATTCAAATT+AGG - chr3_3:58056669-58056688 Msa0460590:intron 20.0%
!! TACCTCTATAATTCAAATTA+GGG - chr3_3:58056670-58056689 Msa0460590:intron 20.0%
!!! TACTATTTTCTTTTCCTTAT+TGG + chr3_3:58057252-58057271 None:intergenic 20.0%
!! TGACATCATATAAGATTTAT+AGG + chr3_3:58057559-58057578 None:intergenic 20.0%
!!! TACATTGACTAATTAATGTA+AGG - chr3_3:58057792-58057811 Msa0460590:intron 20.0%
!! TTTCACTAAATTATTGTCAT+GGG + chr3_3:58057853-58057872 None:intergenic 20.0%
!!! TTTTCACTAAATTATTGTCA+TGG + chr3_3:58057854-58057873 None:intergenic 20.0%
!! AATAATTTAGTGAAAAACAG+TGG - chr3_3:58057858-58057877 Msa0460590:intron 20.0%
!! TAACCTAAAGTTAAAATGTT+AGG + chr3_3:58058936-58058955 None:intergenic 20.0%
!!! ATTATGTTTTGATGTAACTA+GGG - chr3_3:58059270-58059289 Msa0460590:intron 20.0%
!! GTGAAACTTCATTAAAATTA+TGG + chr3_3:58059634-58059653 None:intergenic 20.0%
!! TTGGTATAAACTATATATGA+AGG + chr3_3:58059761-58059780 None:intergenic 20.0%
!! ACATTACATTTATGCATATT+TGG + chr3_3:58059780-58059799 None:intergenic 20.0%
!! TGGATTAATTTGACTAATAG+AGG - chr3_3:58055831-58055850 Msa0460590:three_prime_UTR 25.0%
! TGATATTTGTACAACCATTT+CGG - chr3_3:58055999-58056018 Msa0460590:CDS 25.0%
!!! TCTCAAAGGTTTTATCAAAA+TGG - chr3_3:58056163-58056182 Msa0460590:intron 25.0%
! AAATTAAGGCACAAAACATA+AGG - chr3_3:58056403-58056422 Msa0460590:intron 25.0%
! ACCTCTATAATTCAAATTAG+GGG - chr3_3:58056671-58056690 Msa0460590:intron 25.0%
! ATTGGTAAATTCGTTTATAG+TGG + chr3_3:58057166-58057185 None:intergenic 25.0%
!!! ACTTTGGTATAGTTTTATCT+TGG + chr3_3:58057217-58057236 None:intergenic 25.0%
! ATTAACCATATTATCAAAGC+TGG + chr3_3:58057389-58057408 None:intergenic 25.0%
!!! TATGTTGCTTTTTCTATGAT+GGG + chr3_3:58057603-58057622 None:intergenic 25.0%
!!! TTATGTTGCTTTTTCTATGA+TGG + chr3_3:58057604-58057623 None:intergenic 25.0%
! TGACTAATTAATGTAAGGTT+AGG - chr3_3:58057797-58057816 Msa0460590:intron 25.0%
! TAATTAATGTAAGGTTAGGT+AGG - chr3_3:58057801-58057820 Msa0460590:intron 25.0%
! ATTCTCTGTCAATCTAAATA+TGG + chr3_3:58058174-58058193 None:intergenic 25.0%
! ATACATACCTTGAAGTAATT+GGG + chr3_3:58058734-58058753 None:intergenic 25.0%
! TATACATACCTTGAAGTAAT+TGG + chr3_3:58058735-58058754 None:intergenic 25.0%
! TATGTATATATATACCCTTG+TGG - chr3_3:58058747-58058766 Msa0460590:intron 25.0%
! CAATCATGTATTACTAGATT+TGG - chr3_3:58058789-58058808 Msa0460590:intron 25.0%
! ATGAAACAGAGAAGATAAAT+TGG + chr3_3:58058856-58058875 None:intergenic 25.0%
! CTAAAGTTAAAATGTTAGGT+TGG + chr3_3:58058932-58058951 None:intergenic 25.0%
!!! CAACCTAACATTTTAACTTT+AGG - chr3_3:58058930-58058949 Msa0460590:intron 25.0%
! ACCATAAAAAATTCAACACT+AGG - chr3_3:58059031-58059050 Msa0460590:intron 25.0%
!!! TCCTAGTGTTGAATTTTTTA+TGG + chr3_3:58059035-58059054 None:intergenic 25.0%
! TCAAAACATAATGGTACAAA+AGG + chr3_3:58059262-58059281 None:intergenic 25.0%
! CTAGTTACATCAAAACATAA+TGG + chr3_3:58059271-58059290 None:intergenic 25.0%
!!! CATTATGTTTTGATGTAACT+AGG - chr3_3:58059269-58059288 Msa0460590:intron 25.0%
!!! TTATGTTTTGATGTAACTAG+GGG - chr3_3:58059271-58059290 Msa0460590:intron 25.0%
! TTTAGTCCTAATAATGGTAA+TGG + chr3_3:58059531-58059550 None:intergenic 25.0%
! ATTACCATTATTAGGACTAA+AGG - chr3_3:58059530-58059549 Msa0460590:intron 25.0%
! TAAAGGTTGAATTAAAGTGA+AGG - chr3_3:58059547-58059566 Msa0460590:intron 25.0%
! ACTTAATTAGTGCATGTTTA+GGG - chr3_3:58059577-58059596 Msa0460590:intron 25.0%
GAAGAATTTGAGAAAGACAA+TGG - chr3_3:58055608-58055627 Msa0460590:three_prime_UTR 30.0%
ACTAGACATGCATGATTTAA+TGG - chr3_3:58055691-58055710 Msa0460590:three_prime_UTR 30.0%
TAACGAATTAATGAGGTCTT+TGG - chr3_3:58055752-58055771 Msa0460590:three_prime_UTR 30.0%
GGGTTAAAAGTTAACAGAAT+TGG - chr3_3:58055811-58055830 Msa0460590:three_prime_UTR 30.0%
TGACTAATAGAGGTAAGTTA+TGG - chr3_3:58055841-58055860 Msa0460590:three_prime_UTR 30.0%
GACTAATAGAGGTAAGTTAT+GGG - chr3_3:58055842-58055861 Msa0460590:three_prime_UTR 30.0%
ACCATATGAATTGTTGAAGT+TGG + chr3_3:58056257-58056276 None:intergenic 30.0%
TAAAACTAGCAACATCATTG+AGG + chr3_3:58056353-58056372 None:intergenic 30.0%
TGAAAAGATACAAAAGCCAA+AGG - chr3_3:58056470-58056489 Msa0460590:intron 30.0%
ACCCCTAATTTGAATTATAG+AGG + chr3_3:58056675-58056694 None:intergenic 30.0%
! GTAAATTCGTTTATAGTGGA+CGG + chr3_3:58057162-58057181 None:intergenic 30.0%
! GTTTTATCTTGGACATTGTT+TGG + chr3_3:58057206-58057225 None:intergenic 30.0%
TTGGTTTACTTCTCTTACTT+TGG + chr3_3:58057233-58057252 None:intergenic 30.0%
GTAAGAGAAGTAAACCAATA+AGG - chr3_3:58057235-58057254 Msa0460590:intron 30.0%
GTGATATTTCGAATCTCTTT+CGG - chr3_3:58057339-58057358 Msa0460590:intron 30.0%
TGATATTTCGAATCTCTTTC+GGG - chr3_3:58057340-58057359 Msa0460590:intron 30.0%
! ATTGTCCAGCTTTGATAATA+TGG - chr3_3:58057381-58057400 Msa0460590:intron 30.0%
TTAGCAATTGTAAACGAGTT+AGG + chr3_3:58057452-58057471 None:intergenic 30.0%
! TCTGATTATAGTATTGAGGA+AGG + chr3_3:58057692-58057711 None:intergenic 30.0%
TTGGTCTGATTATAGTATTG+AGG + chr3_3:58057696-58057715 None:intergenic 30.0%
AATCAACACTCTAATTCATG+TGG - chr3_3:58057746-58057765 Msa0460590:intron 30.0%
TTCTAGTACACAGAAGTTAA+TGG + chr3_3:58057910-58057929 None:intergenic 30.0%
ACTCATTCAGATTTAACTCT+TGG - chr3_3:58058002-58058021 Msa0460590:intron 30.0%
AAATAAACGAGCAAGTGAAA+AGG + chr3_3:58058040-58058059 None:intergenic 30.0%
TAACAAGTGAATCAAAGGAA+AGG + chr3_3:58058083-58058102 None:intergenic 30.0%
GTCATCTAGTAGTATATTCT+TGG + chr3_3:58058106-58058125 None:intergenic 30.0%
ATATACTACTAGATGACACT+TGG - chr3_3:58058109-58058128 Msa0460590:intron 30.0%
CAAGTAGAATTAGATCATAG+TGG + chr3_3:58058137-58058156 None:intergenic 30.0%
ATTCTACTTGTTTGTGATCT+TGG - chr3_3:58058147-58058166 Msa0460590:intron 30.0%
TTCAATGTAATCACAAGTGT+TGG + chr3_3:58058303-58058322 None:intergenic 30.0%
GAAGAAAATGTTGGAAATAG+AGG + chr3_3:58058703-58058722 None:intergenic 30.0%
GATTCAGCAGCTATATAATA+AGG - chr3_3:58058883-58058902 Msa0460590:intron 30.0%
! TATGATCTTGTGATGATGAT+AGG + chr3_3:58059059-58059078 None:intergenic 30.0%
! AACATTTTCATTTGATCCTC+TGG + chr3_3:58059130-58059149 None:intergenic 30.0%
!!! TATGTTTTGATGTAACTAGG+GGG - chr3_3:58059272-58059291 Msa0460590:intron 30.0%
ACTTACTAGGATTCAAACTA+GGG - chr3_3:58059496-58059515 Msa0460590:intron 30.0%
TCAACCTTTAGTCCTAATAA+TGG + chr3_3:58059537-58059556 None:intergenic 30.0%
CACTTAATTAGTGCATGTTT+AGG - chr3_3:58059576-58059595 Msa0460590:intron 30.0%
! GAGTTAGTTTCACGAAATTA+CGG - chr3_3:58059603-58059622 Msa0460590:intron 30.0%
TCAAATTCAATCACTAGCTA+GGG + chr3_3:58059857-58059876 None:intergenic 30.0%
TTCAAATTCAATCACTAGCT+AGG + chr3_3:58059858-58059877 None:intergenic 30.0%
!! GCTAAAAAGAGTGCTTAGTT+AGG - chr3_3:58055644-58055663 Msa0460590:three_prime_UTR 35.0%
TGGTACAAGGTATGTATAGA+TGG + chr3_3:58055954-58055973 None:intergenic 35.0%
GTACAAAAGTTGTACCGAAA+TGG + chr3_3:58056016-58056035 None:intergenic 35.0%
! TTGTTGTTCTCTCTTCTCAT+TGG + chr3_3:58056138-58056157 None:intergenic 35.0%
GAACAACAAAGTTGTCTCAA+AGG - chr3_3:58056149-58056168 Msa0460590:intron 35.0%
GCCAACTTCAACAATTCATA+TGG - chr3_3:58056253-58056272 Msa0460590:intron 35.0%
GATACAAAAGCCAAAGGATT+CGG - chr3_3:58056476-58056495 Msa0460590:intron 35.0%
ATACAAAAGCCAAAGGATTC+GGG - chr3_3:58056477-58056496 Msa0460590:intron 35.0%
! AGATAAAAAAGCATGCGGTT+TGG - chr3_3:58056747-58056766 Msa0460590:intron 35.0%
ACAAAAAACCGCATTTGGTT+CGG + chr3_3:58056908-58056927 None:intergenic 35.0%
AAACCACAAAAAACCGCATT+TGG + chr3_3:58056913-58056932 None:intergenic 35.0%
!!! AATGCGGTTTTTTGTGGTTT+CGG - chr3_3:58056913-58056932 Msa0460590:CDS 35.0%
!!! TTGGTTTGCGGTTTTTCTAT+TGG - chr3_3:58056947-58056966 Msa0460590:intron 35.0%
!! TGGTTTGCGGTTTTTCTATT+GGG - chr3_3:58056948-58056967 Msa0460590:intron 35.0%
!!! GTTTTTCTATTGGGTTGGTT+CGG - chr3_3:58056957-58056976 Msa0460590:intron 35.0%
TCATAGAAAAGGATATGCAG+CGG - chr3_3:58057299-58057318 Msa0460590:intron 35.0%
AGCTGGACAATAGACAATAA+GGG + chr3_3:58057372-58057391 None:intergenic 35.0%
AAGCTGGACAATAGACAATA+AGG + chr3_3:58057373-58057392 None:intergenic 35.0%
GCAACATAATCCGCATAATA+AGG - chr3_3:58057615-58057634 Msa0460590:intron 35.0%
ACATAATCCGCATAATAAGG+TGG - chr3_3:58057618-58057637 Msa0460590:intron 35.0%
TTAATGTAAGGTTAGGTAGG+TGG - chr3_3:58057804-58057823 Msa0460590:intron 35.0%
TAATGTAAGGTTAGGTAGGT+GGG - chr3_3:58057805-58057824 Msa0460590:intron 35.0%
! GGTATTTTCAGAGCTTAGAA+GGG - chr3_3:58057826-58057845 Msa0460590:intron 35.0%
! GTATTTTCAGAGCTTAGAAG+GGG - chr3_3:58057827-58057846 Msa0460590:intron 35.0%
! CTTGGTAACAAGTGAATCAA+AGG + chr3_3:58058088-58058107 None:intergenic 35.0%
TTCTGATTGAAGATGTGTCT+CGG - chr3_3:58058241-58058260 Msa0460590:intron 35.0%
GTTTCTATGAAGCATAGACA+TGG + chr3_3:58058389-58058408 None:intergenic 35.0%
TATCTTGAAGATGCAATCAC+TGG - chr3_3:58058487-58058506 Msa0460590:intron 35.0%
! TTTTGATCTTGAGAGTAGGT+TGG + chr3_3:58058544-58058563 None:intergenic 35.0%
AACCTACTCTCAAGATCAAA+AGG - chr3_3:58058543-58058562 Msa0460590:intron 35.0%
! AACCTTTTGATCTTGAGAGT+AGG + chr3_3:58058548-58058567 None:intergenic 35.0%
GGTTAACTAACAACTATGCA+TGG - chr3_3:58058564-58058583 Msa0460590:intron 35.0%
AACAAAATGTTTGGTTGAGC+AGG - chr3_3:58058675-58058694 Msa0460590:intron 35.0%
ATATATACCCTTGTGGAATG+TGG - chr3_3:58058754-58058773 Msa0460590:intron 35.0%
! AAAGTAATTTGCAGTGTCAG+TGG + chr3_3:58059004-58059023 None:intergenic 35.0%
AATAGCTTATCCATTTGAGC+TGG - chr3_3:58059307-58059326 Msa0460590:intron 35.0%
ATGGACTCATCATCATTTGA+TGG + chr3_3:58059379-58059398 None:intergenic 35.0%
! TAACCACGGTTTGAAATACA+TGG + chr3_3:58059449-58059468 None:intergenic 35.0%
TGTATTTCAAACCGTGGTTA+TGG - chr3_3:58059449-58059468 Msa0460590:intron 35.0%
TTCCTGAAATACCATAACCA+CGG + chr3_3:58059463-58059482 None:intergenic 35.0%
TGGTATTTCAGGAAAAGAAG+TGG - chr3_3:58059469-58059488 Msa0460590:intron 35.0%
CACTTACTAGGATTCAAACT+AGG - chr3_3:58059495-58059514 Msa0460590:intron 35.0%
CTTACTAGGATTCAAACTAG+GGG - chr3_3:58059497-58059516 Msa0460590:intron 35.0%
AAATTCAATCACTAGCTAGG+GGG + chr3_3:58059855-58059874 None:intergenic 35.0%
CAAATTCAATCACTAGCTAG+GGG + chr3_3:58059856-58059875 None:intergenic 35.0%
GAAAGACAATGGTCAAGTAG+TGG - chr3_3:58055619-58055638 Msa0460590:three_prime_UTR 40.0%
!! AAGAGTGCTTAGTTAGGTGT+TGG - chr3_3:58055650-58055669 Msa0460590:three_prime_UTR 40.0%
CGAATTAATGAGGTCTTTGG+TGG - chr3_3:58055755-58055774 Msa0460590:three_prime_UTR 40.0%
! ACTTTTAACCCACGTGTCTT+AGG + chr3_3:58055802-58055821 None:intergenic 40.0%
!! ATTCAAATTAGGGGTGTTCG+CGG - chr3_3:58056680-58056699 Msa0460590:intron 40.0%
!!! TGCTTTTTTATCTCGCGGTT+TGG + chr3_3:58056740-58056759 None:intergenic 40.0%
!! AAAAAGCATGCGGTTTGGTT+TGG - chr3_3:58056752-58056771 Msa0460590:intron 40.0%
!! TGGTTTCGTTTGGTTTGGTT+TGG + chr3_3:58056802-58056821 None:intergenic 40.0%
CAAACCAAACGAAACCAATG+CGG - chr3_3:58056805-58056824 Msa0460590:intron 40.0%
!! GCATTTGGTTCGGATGAATT+CGG + chr3_3:58056898-58056917 None:intergenic 40.0%
GAATTCATCCGAACCAAATG+CGG - chr3_3:58056897-58056916 Msa0460590:CDS 40.0%
!!! GAACCAAATGCGGTTTTTTG+TGG - chr3_3:58056907-58056926 Msa0460590:CDS 40.0%
!!! GGTTTTTTGTGGTTTCGGTT+TGG - chr3_3:58056918-58056937 Msa0460590:CDS 40.0%
!! TTTGTGGTTTCGGTTTGGAT+TGG - chr3_3:58056923-58056942 Msa0460590:CDS 40.0%
!! GTTTGGATTGGTTTGGTTTG+CGG - chr3_3:58056935-58056954 Msa0460590:CDS 40.0%
! TTGCGGTTTTTCTATTGGGT+TGG - chr3_3:58056952-58056971 Msa0460590:intron 40.0%
! TTTTCGGCCACCTTATTATG+CGG + chr3_3:58057628-58057647 None:intergenic 40.0%
! GGGTATTTTCAGAGCTTAGA+AGG - chr3_3:58057825-58057844 Msa0460590:intron 40.0%
GATTCCAATGTCCAATTCCA+TGG + chr3_3:58057982-58058001 None:intergenic 40.0%
TTTGCAGCTGATACATCAAG+TGG - chr3_3:58058463-58058482 Msa0460590:intron 40.0%
! GCTGCTTTCGAAGAAAATGT+TGG + chr3_3:58058712-58058731 None:intergenic 40.0%
AAAGCAGCCCAATTACTTCA+AGG - chr3_3:58058724-58058743 Msa0460590:intron 40.0%
ATAGAATCTTCTACAGCCAC+AGG + chr3_3:58059419-58059438 None:intergenic 40.0%
CATCCATGTATTTCAAACCG+TGG - chr3_3:58059443-58059462 Msa0460590:intron 40.0%
AACCGTGGTTATGGTATTTC+AGG - chr3_3:58059458-58059477 Msa0460590:intron 40.0%
GAGGCTCCATTACCATTATT+AGG - chr3_3:58059522-58059541 Msa0460590:intron 40.0%
! ATGGTGTGTCACCGTAATTT+TGG + chr3_3:58059670-58059689 None:intergenic 40.0%
CTTAGGTGGACACACACTTA+AGG + chr3_3:58055785-58055804 None:intergenic 45.0%
TTTAACCCACGTGTCTTAGG+TGG + chr3_3:58055799-58055818 None:intergenic 45.0%
!!! CCGCATGCTTTTTTATCTCG+CGG + chr3_3:58056745-58056764 None:intergenic 45.0%
! CCGCGAGATAAAAAAGCATG+CGG - chr3_3:58056742-58056761 Msa0460590:intron 45.0%
!! CGCATTGGTTTCGTTTGGTT+TGG + chr3_3:58056807-58056826 None:intergenic 45.0%
!! CAAACCGCATTGGTTTCGTT+TGG + chr3_3:58056812-58056831 None:intergenic 45.0%
CAAACGAAACCAATGCGGTT+TGG - chr3_3:58056810-58056829 Msa0460590:intron 45.0%
!! GAAACCAATGCGGTTTGGTT+TGG - chr3_3:58056815-58056834 Msa0460590:intron 45.0%
TGAACCAAACCAAACCGCAT+TGG + chr3_3:58056822-58056841 None:intergenic 45.0%
!! GGTTTCGGTTTGGATTGGTT+TGG - chr3_3:58056928-58056947 Msa0460590:CDS 45.0%
CAATTCCATGGATGGAGGAA+AGG + chr3_3:58057970-58057989 None:intergenic 45.0%
CTTTCCTCCATCCATGGAAT+TGG - chr3_3:58057968-58057987 Msa0460590:intron 45.0%
ATGTCCAATTCCATGGATGG+AGG + chr3_3:58057975-58057994 None:intergenic 45.0%
CCAATGTCCAATTCCATGGA+TGG + chr3_3:58057978-58057997 None:intergenic 45.0%
CCATCCATGGAATTGGACAT+TGG - chr3_3:58057975-58057994 Msa0460590:intron 45.0%
GTGCATCAGAGAACTGAGTT+TGG + chr3_3:58058215-58058234 None:intergenic 45.0%
TGAAGCATAGACATGGACAG+CGG + chr3_3:58058382-58058401 None:intergenic 45.0%
!! CTGTTTCTACAGCTGAGTCT+TGG - chr3_3:58058440-58058459 Msa0460590:intron 45.0%
TTGAAGATGCAATCACTGGC+TGG - chr3_3:58058491-58058510 Msa0460590:intron 45.0%
! TGAAGATGCAATCACTGGCT+GGG - chr3_3:58058492-58058511 Msa0460590:intron 45.0%
! CAATCACTGGCTGGGATATT+TGG - chr3_3:58058500-58058519 Msa0460590:intron 45.0%
GATGCAACCACATTCCACAA+GGG + chr3_3:58058764-58058783 None:intergenic 45.0%
TGATGCAACCACATTCCACA+AGG + chr3_3:58058765-58058784 None:intergenic 45.0%
! GTAATTTGCAGTGTCAGTGG+TGG + chr3_3:58059001-58059020 None:intergenic 45.0%
CTGGATGCACAACTTCTTTG+AGG + chr3_3:58059111-58059130 None:intergenic 45.0%
CAAAGAAGTTGTGCATCCAG+AGG - chr3_3:58059111-58059130 Msa0460590:intron 45.0%
TGATGTAACTAGGGGGACAT+TGG - chr3_3:58059279-58059298 Msa0460590:intron 45.0%
TGAAACCTGGAGGAGTTGAA+GGG - chr3_3:58059330-58059349 Msa0460590:intron 45.0%
!! GGATGTGGAATTGGCTTTGA+TGG + chr3_3:58059398-58059417 None:intergenic 45.0%
AAAGCCAATTCCACATCCTG+TGG - chr3_3:58059400-58059419 Msa0460590:intron 45.0%
AAGAAGTGGCAGCACTTACT+AGG - chr3_3:58059483-58059502 Msa0460590:intron 45.0%
AGGATTCAAACTAGGGGTAG+AGG - chr3_3:58059503-58059522 Msa0460590:intron 45.0%
!!! ATTAATTTTTTGTTTTAATT+TGG + chr3_3:58055869-58055888 None:intergenic 5.0%
!!! TTCATATTTTTTATTTAATT+TGG + chr3_3:58056440-58056459 None:intergenic 5.0%
!! AAATTAAATAAAAAATATGA+AGG - chr3_3:58056439-58056458 Msa0460590:intron 5.0%
!!! AAATATTTTCAAAATAAAAA+AGG - chr3_3:58057509-58057528 Msa0460590:intron 5.0%
!! ATAAAATGAAAATAATAAAT+GGG + chr3_3:58057772-58057791 None:intergenic 5.0%
!! AATAAAATGAAAATAATAAA+TGG + chr3_3:58057773-58057792 None:intergenic 5.0%
AGGTGGACACACACTTAAGG+CGG + chr3_3:58055782-58055801 None:intergenic 50.0%
TGTGTCCACCTAAGACACGT+GGG - chr3_3:58055791-58055810 Msa0460590:three_prime_UTR 50.0%
AGTGAAGCTCCCGAATCCTT+TGG + chr3_3:58056489-58056508 None:intergenic 50.0%
!! GCATGCGGTTTGGTTTGGTT+CGG - chr3_3:58056757-58056776 Msa0460590:intron 50.0%
CACTTCCTTTCCTCCATCCA+TGG - chr3_3:58057962-58057981 Msa0460590:intron 50.0%
CTGTCACGAACACGTTGACA+TGG + chr3_3:58058351-58058370 None:intergenic 50.0%
CCAGGTTTCACCAGCTCAAA+TGG + chr3_3:58059320-58059339 None:intergenic 50.0%
CCATTTGAGCTGGTGAAACC+TGG - chr3_3:58059317-58059336 Msa0460590:intron 50.0%
TTTGAGCTGGTGAAACCTGG+AGG - chr3_3:58059320-58059339 Msa0460590:intron 50.0%
GTGAAACCTGGAGGAGTTGA+AGG - chr3_3:58059329-58059348 Msa0460590:intron 50.0%
GAAACCTGGAGGAGTTGAAG+GGG - chr3_3:58059331-58059350 Msa0460590:intron 50.0%
ACAGCCACAGGATGTGGAAT+TGG + chr3_3:58059407-58059426 None:intergenic 50.0%
TCTTCTACAGCCACAGGATG+TGG + chr3_3:58059413-58059432 None:intergenic 50.0%
ACGGTGACACACCATGATTG+TGG - chr3_3:58059675-58059694 Msa0460590:intron 50.0%
GTGTGTCCACCTAAGACACG+TGG - chr3_3:58055790-58055809 Msa0460590:three_prime_UTR 55.0%
!! AATTAGGGGTGTTCGCGGTG+CGG - chr3_3:58056685-58056704 Msa0460590:CDS 55.0%
TTGCACTAAACCGCGCGGTT+CGG + chr3_3:58056873-58056892 None:intergenic 55.0%
CGGATTTGCACTAAACCGCG+CGG + chr3_3:58056878-58056897 None:intergenic 55.0%
GTTTCCCCTTCAACTCCTCC+AGG + chr3_3:58059338-58059357 None:intergenic 55.0%
CCACGAGTTCGCCACAATCA+TGG + chr3_3:58059689-58059708 None:intergenic 55.0%
CCATGATTGTGGCGAACTCG+TGG - chr3_3:58059686-58059705 Msa0460590:intron 55.0%
!! CTAAACCGCGCGGTTCGGTT+CGG + chr3_3:58056868-58056887 None:intergenic 60.0%
!! GCGCGGTTCGGTTCGGTTTG+CGG + chr3_3:58056861-58056880 None:intergenic 65.0%
GCAAACCGAACCGAACCGCG+CGG - chr3_3:58056860-58056879 Msa0460590:intron 65.0%
! GGGGTGTTCGCGGTGCGGTT+TGG - chr3_3:58056690-58056709 Msa0460590:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 58055545 58059881 58055545 ID=Msa0460590;Name=Msa0460590
chr3_3 mRNA 58055545 58059881 58055545 ID=Msa0460590-mRNA-1;Parent=Msa0460590;Name=Msa0460590-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.6|0.5|0.83|0.6|0.5|6|325|213
chr3_3 exon 58055545 58056135 58055545 ID=Msa0460590-mRNA-1:exon:12082;Parent=Msa0460590-mRNA-1
chr3_3 exon 58056264 58056395 58056264 ID=Msa0460590-mRNA-1:exon:12081;Parent=Msa0460590-mRNA-1
chr3_3 exon 58056681 58056729 58056681 ID=Msa0460590-mRNA-1:exon:12080;Parent=Msa0460590-mRNA-1
chr3_3 exon 58056862 58056956 58056862 ID=Msa0460590-mRNA-1:exon:12079;Parent=Msa0460590-mRNA-1
chr3_3 exon 58057403 58057498 58057403 ID=Msa0460590-mRNA-1:exon:12078;Parent=Msa0460590-mRNA-1
chr3_3 exon 58059878 58059881 58059878 ID=Msa0460590-mRNA-1:exon:12077;Parent=Msa0460590-mRNA-1
chr3_3 CDS 58059878 58059881 58059878 ID=Msa0460590-mRNA-1:cds;Parent=Msa0460590-mRNA-1
chr3_3 CDS 58057403 58057498 58057403 ID=Msa0460590-mRNA-1:cds;Parent=Msa0460590-mRNA-1
chr3_3 CDS 58056862 58056956 58056862 ID=Msa0460590-mRNA-1:cds;Parent=Msa0460590-mRNA-1
chr3_3 CDS 58056681 58056729 58056681 ID=Msa0460590-mRNA-1:cds;Parent=Msa0460590-mRNA-1
chr3_3 CDS 58056264 58056395 58056264 ID=Msa0460590-mRNA-1:cds;Parent=Msa0460590-mRNA-1
chr3_3 CDS 58055870 58056135 58055870 ID=Msa0460590-mRNA-1:cds;Parent=Msa0460590-mRNA-1
chr3_3 three_prime_UTR 58055545 58055869 58055545 ID=Msa0460590-mRNA-1:three_prime_utr;Parent=Msa0460590-mRNA-1
Gene Sequence

>Msa0460590

ATGGAAAGATTCATCACACAATTGCTTGCTTGTGTTTTCACTTCCTTTCCTCCATCCATGGAATTGGACATTGGAATCACTCATTCAGATTTAACTCTTGCTGATACATCAAGTGGATATCTTGAAGATGCAATCACTGGCTGGGATATTTGGTGCAAGCAAGATAACTTACCAACCTACTCTCAAGATCAAAAGGAACCTCTATTTCCAACATTTTCTTCGAAAGCAGCCCAATTACTTCAAGACCATAAAAAATTCAACACTAGGAACCTATCATCATCACAAGATCATACACATTCAGCTGCAGTAAATCATGATTCACCTCAAAGAAGTTGTGCATCCAGAGGATCAAATGAAAATGTTGCTTCTGTTTCAAGGGGACATTGGAAGAAAATAGCTTATCCATTTGAGCTGGTGAAACCTGGAGGAGTTGAAGGGGAAACAACAATTAAAGATATAAACCATCAAATGATGATGAGTCCATCAAAGCCAATTCCACATCCTGTGGCTGTAGAAGATTCTATGACTCATCCATGTATTTCAAACCGTGGTTATGGTATTTCAGGAAAAGAAGTGGCAGCACTTACTAGGATTCAAACTAGGGGTAGAGGCTCCATTACCATTATTAGGACTAAAGGTTGA

Protein sequence

>Msa0460590

MERFITQLLACVFTSFPPSMELDIGITHSDLTLADTSSGYLEDAITGWDIWCKQDNLPTYSQDQKEPLFPTFSSKAAQLLQDHKKFNTRNLSSSQDHTHSAAVNHDSPQRSCASRGSNENVASVSRGHWKKIAYPFELVKPGGVEGETTIKDINHQMMMSPSKPIPHPVAVEDSMTHPCISNRGYGISGKEVAALTRIQTRGRGSITIIRTKG*