AlfalfaGEDB | Msa0460590

M. sativa cultivar zhongmu-4 / Msa0460590

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0460590	AES70906.1	84.651	215	27	1	5	213	60	274	2.86e-127	370

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0460590	G7J8M9	84.651	215	27	1	5	213	60	274	1.37e-127	370

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0460590	0.829934	3.899520e-55	-8.615850e-47
Msa0003700	Msa0460590	0.810969	8.846460e-51	-8.615850e-47
Msa0003890	Msa0460590	0.829078	6.295828e-55	-8.615850e-47
Msa0006110	Msa0460590	0.812711	3.694459e-51	-8.615850e-47
Msa0007990	Msa0460590	0.831259	1.847039e-55	-8.615850e-47
Msa0011170	Msa0460590	0.801570	8.458199e-49	-8.615850e-47
Msa0011660	Msa0460590	-0.814811	1.274144e-51	-8.615850e-47
Msa0011930	Msa0460590	0.806145	9.480321e-50	-8.615850e-47
Msa0014570	Msa0460590	0.831267	1.838687e-55	-8.615850e-47
Msa0014710	Msa0460590	0.800328	1.517635e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0460590	MtrunA17_Chr3g0109931	88.500	200	17	1	20	213	1	200	1.99e-128	360
Msa0460590	MtrunA17_Chr8g0375391	47.368	114	54	3	101	213	170	278	1.93e-26	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0460590	AT2G01990.1	37.019	208	100	6	30	213	13	213	1.48e-32	117
Msa0460590	AT2G01990.2	37.019	208	100	6	30	213	44	244	4.45e-32	117
Msa0460590	AT1G14630.1	37.173	191	105	5	30	213	44	226	9.65e-29	107
Msa0460590	AT5G48720.2	41.860	86	35	3	132	213	226	300	1.86e-11	62.4
Msa0460590	AT5G48720.4	41.860	86	35	3	132	213	226	300	1.86e-11	62.4
Msa0460590	AT5G48720.1	41.860	86	35	3	132	213	192	266	2.12e-11	62.0
Msa0460590	AT5G48720.3	41.860	86	35	3	132	213	192	266	2.12e-11	62.0

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Find 66 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAGCCCAATTACTTCA+AGG	0.465374	3_3:-58056680	Msa0460590:intron
AAAGCCAATTCCACATCCTG+TGG	0.636787	3_3:-58056004	Msa0460590:CDS
AAATTCAATCACTAGCTAGG+GGG	0.691101	3_3:+58055552	None:intergenic
AACCGTGGTTATGGTATTTC+AGG	0.166700	3_3:-58055946	Msa0460590:CDS
AACCTACTCTCAAGATCAAA+AGG	0.460972	3_3:-58056861	Msa0460590:intron
AAGAAGTGGCAGCACTTACT+AGG	0.434363	3_3:-58055921	Msa0460590:CDS
AATAGCTTATCCATTTGAGC+TGG	0.561873	3_3:-58056097	Msa0460590:CDS
ACAGCCACAGGATGTGGAAT+TGG	0.391650	3_3:+58056000	None:intergenic
ACATTACATTTATGCATATT+TGG	0.148666	3_3:+58055627	None:intergenic
ACGGTGACACACCATGATTG+TGG	0.648803	3_3:-58055729	Msa0460590:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGAATTTGAGAAAGACAA+TGG	-	chr3_3:58055608-58055627	Msa0460590:three_prime_UTR	30.0%
ACTAGACATGCATGATTTAA+TGG	-	chr3_3:58055691-58055710	Msa0460590:three_prime_UTR	30.0%
TAACGAATTAATGAGGTCTT+TGG	-	chr3_3:58055752-58055771	Msa0460590:three_prime_UTR	30.0%
GGGTTAAAAGTTAACAGAAT+TGG	-	chr3_3:58055811-58055830	Msa0460590:three_prime_UTR	30.0%
TGACTAATAGAGGTAAGTTA+TGG	-	chr3_3:58055841-58055860	Msa0460590:three_prime_UTR	30.0%
GACTAATAGAGGTAAGTTAT+GGG	-	chr3_3:58055842-58055861	Msa0460590:three_prime_UTR	30.0%
ACCATATGAATTGTTGAAGT+TGG	+	chr3_3:58056257-58056276	None:intergenic	30.0%
TAAAACTAGCAACATCATTG+AGG	+	chr3_3:58056353-58056372	None:intergenic	30.0%
TGAAAAGATACAAAAGCCAA+AGG	-	chr3_3:58056470-58056489	Msa0460590:intron	30.0%
ACCCCTAATTTGAATTATAG+AGG	+	chr3_3:58056675-58056694	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	58055545	58059881	58055545	ID=Msa0460590;Name=Msa0460590
chr3_3	mRNA	58055545	58059881	58055545	ID=Msa0460590-mRNA-1;Parent=Msa0460590;Name=Msa0460590-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0\|0.6\|0.5\|0.83\|0.6\|0.5\|6\|325\|213
chr3_3	exon	58055545	58056135	58055545	ID=Msa0460590-mRNA-1:exon:12082;Parent=Msa0460590-mRNA-1
chr3_3	exon	58056264	58056395	58056264	ID=Msa0460590-mRNA-1:exon:12081;Parent=Msa0460590-mRNA-1
chr3_3	exon	58056681	58056729	58056681	ID=Msa0460590-mRNA-1:exon:12080;Parent=Msa0460590-mRNA-1
chr3_3	exon	58056862	58056956	58056862	ID=Msa0460590-mRNA-1:exon:12079;Parent=Msa0460590-mRNA-1
chr3_3	exon	58057403	58057498	58057403	ID=Msa0460590-mRNA-1:exon:12078;Parent=Msa0460590-mRNA-1
chr3_3	exon	58059878	58059881	58059878	ID=Msa0460590-mRNA-1:exon:12077;Parent=Msa0460590-mRNA-1
chr3_3	CDS	58059878	58059881	58059878	ID=Msa0460590-mRNA-1:cds;Parent=Msa0460590-mRNA-1
chr3_3	CDS	58057403	58057498	58057403	ID=Msa0460590-mRNA-1:cds;Parent=Msa0460590-mRNA-1
chr3_3	CDS	58056862	58056956	58056862	ID=Msa0460590-mRNA-1:cds;Parent=Msa0460590-mRNA-1
chr3_3	CDS	58056681	58056729	58056681	ID=Msa0460590-mRNA-1:cds;Parent=Msa0460590-mRNA-1
chr3_3	CDS	58056264	58056395	58056264	ID=Msa0460590-mRNA-1:cds;Parent=Msa0460590-mRNA-1
chr3_3	CDS	58055870	58056135	58055870	ID=Msa0460590-mRNA-1:cds;Parent=Msa0460590-mRNA-1
chr3_3	three_prime_UTR	58055545	58055869	58055545	ID=Msa0460590-mRNA-1:three_prime_utr;Parent=Msa0460590-mRNA-1

Gene Sequence

>Msa0460590

ATGGAAAGATTCATCACACAATTGCTTGCTTGTGTTTTCACTTCCTTTCCTCCATCCATGGAATTGGACATTGGAATCACTCATTCAGATTTAACTCTTGCTGATACATCAAGTGGATATCTTGAAGATGCAATCACTGGCTGGGATATTTGGTGCAAGCAAGATAACTTACCAACCTACTCTCAAGATCAAAAGGAACCTCTATTTCCAACATTTTCTTCGAAAGCAGCCCAATTACTTCAAGACCATAAAAAATTCAACACTAGGAACCTATCATCATCACAAGATCATACACATTCAGCTGCAGTAAATCATGATTCACCTCAAAGAAGTTGTGCATCCAGAGGATCAAATGAAAATGTTGCTTCTGTTTCAAGGGGACATTGGAAGAAAATAGCTTATCCATTTGAGCTGGTGAAACCTGGAGGAGTTGAAGGGGAAACAACAATTAAAGATATAAACCATCAAATGATGATGAGTCCATCAAAGCCAATTCCACATCCTGTGGCTGTAGAAGATTCTATGACTCATCCATGTATTTCAAACCGTGGTTATGGTATTTCAGGAAAAGAAGTGGCAGCACTTACTAGGATTCAAACTAGGGGTAGAGGCTCCATTACCATTATTAGGACTAAAGGTTGA

Protein sequence

>Msa0460590

MERFITQLLACVFTSFPPSMELDIGITHSDLTLADTSSGYLEDAITGWDIWCKQDNLPTYSQDQKEPLFPTFSSKAAQLLQDHKKFNTRNLSSSQDHTHSAAVNHDSPQRSCASRGSNENVASVSRGHWKKIAYPFELVKPGGVEGETTIKDINHQMMMSPSKPIPHPVAVEDSMTHPCISNRGYGISGKEVAALTRIQTRGRGSITIIRTKG*