AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0738340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0738340 MtrunA17_Chr5g0436811 99.165 479 4 0 1 479 1 479 0.0 981
Msa0738340 MtrunA17_Chr7g0241841 85.256 468 66 2 1 466 1 467 0.0 831
Msa0738340 MtrunA17_Chr4g0006031 84.154 467 73 1 1 466 1 467 0.0 825
Msa0738340 MtrunA17_Chr4g0037361 76.496 468 106 1 9 472 2 469 0.0 757
Msa0738340 MtrunA17_Chr3g0114951 76.562 448 93 1 21 468 15 450 0.0 706
Msa0738340 MtrunA17_Chr4g0027241 23.973 438 275 15 1 403 4 418 1.01e-13 73.2
Msa0738340 MtrunA17_Chr8g0387941 24.736 473 284 23 22 460 13 447 1.11e-13 72.8
Msa0738340 MtrunA17_Chr1g0198081 21.844 499 316 15 6 462 14 480 8.50e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0738340 AT2G38120.1 83.761 468 72 1 5 468 2 469 0.0 820
Msa0738340 AT5G01240.1 78.601 486 97 3 1 479 1 486 0.0 787
Msa0738340 AT2G21050.1 78.146 453 96 1 17 466 9 461 0.0 746
Msa0738340 AT1G77690.1 78.509 456 93 1 21 471 15 470 0.0 726
Msa0738340 AT2G38120.2 84.069 408 61 1 5 408 2 409 0.0 716
Msa0738340 AT5G01240.2 82.759 406 69 1 75 479 1 406 0.0 701

Find 145 sgRNAs with CRISPR-Local

Find 524 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATAATCTTCCCTTTCTT+TGG 0.196484 5_1:-56072198 Msa0738340:CDS
AACTGCACTTTCCTTCTCTT+TGG 0.203019 5_1:-56075153 Msa0738340:CDS
CTCAGCTGTAGGGGCTCTTT+TGG 0.244420 5_1:-56072166 Msa0738340:CDS
AATCCAATTGCTTTCCAATA+AGG 0.261089 5_1:+56075183 None:intergenic
GTTGGCTATAATCAAGTCTA+TGG 0.270118 5_1:+56069420 None:intergenic
ATCTGCCATTGCTGTCTATT+GGG 0.270235 5_1:-56072758 Msa0738340:CDS
TCATTCGGGCCCAAAGAAAA+TGG 0.279960 5_1:-56074249 Msa0738340:CDS
AGCCCCTACAGCTGAGTTAA+TGG 0.289657 5_1:+56072173 None:intergenic
CATCTGCCATTGCTGTCTAT+TGG 0.296588 5_1:-56072759 Msa0738340:CDS
AGGGTTTACTTGGTCCTTAT+TGG 0.304787 5_1:-56075197 Msa0738340:CDS
TCTCAGCTAGGAATGATTTC+AGG 0.305170 5_1:-56075622 Msa0738340:CDS
ACAAACTCATAACTGATAAA+AGG 0.306264 5_1:-56077014 Msa0738340:five_prime_UTR
ATCAAACAAGTTGACACATT+TGG 0.306547 5_1:-56069682 Msa0738340:CDS
CATTCCATAACTATAGGATT+TGG 0.310810 5_1:-56074900 Msa0738340:CDS
CTGCTCATATGCTCACTTAT+AGG 0.316484 5_1:-56072113 Msa0738340:CDS
ATTTGGTCTTTCCTTGGCCT+TGG 0.319258 5_1:-56074883 Msa0738340:CDS
TGGGTTACTATTGTAGGCTT+TGG 0.321342 5_1:-56069736 Msa0738340:CDS
AAATTGCAGTTTATCACCTT+TGG 0.321885 5_1:-56072339 Msa0738340:intron
GAATGGTTGAGATATAAATA+AGG 0.323299 5_1:+56076875 None:intergenic
ATCATATTCCAAGTCTTCTA+TGG 0.331967 5_1:-56075598 Msa0738340:CDS
ACCATTGCAGCCATTGTTCA+TGG 0.335047 5_1:-56074832 Msa0738340:CDS
ATTGCTGTCTATTGGGCCTT+TGG 0.336510 5_1:-56072751 Msa0738340:CDS
ACTATTGTAGGCTTTGGATT+TGG 0.339464 5_1:-56069730 Msa0738340:CDS
GTACACCATTGTACTTTGTA+TGG 0.339983 5_1:-56072308 Msa0738340:CDS
TTCTCTCTTCTTCCTCGTAA+TGG 0.341226 5_1:-56072700 Msa0738340:CDS
TGGTTGGAAGCTGGTAGTTT+TGG 0.342663 5_1:+56069631 None:intergenic
GTTGAAAATGTGGTTCATTC+GGG 0.342951 5_1:-56074263 Msa0738340:CDS
TACCTTCATTCCATAACTAT+AGG 0.359384 5_1:-56074906 Msa0738340:CDS
CCAAGTCTTCTATGGATTGA+TGG 0.363039 5_1:-56075590 Msa0738340:CDS
TACCTGTGGTAATACCAATA+TGG 0.369780 5_1:-56072227 Msa0738340:CDS
TCAATGCGTTTGTGGTGATA+TGG 0.371914 5_1:-56069756 Msa0738340:CDS
GTTTAGCTGTGCCTCAAATC+AGG 0.376028 5_1:-56075976 Msa0738340:intron
GTGATATGGGTTACTATTGT+AGG 0.377453 5_1:-56069742 Msa0738340:CDS
TGGGTTTGGTGATTGGTAAT+TGG 0.379644 5_1:-56069391 Msa0738340:three_prime_UTR
GGTTGAAAATGTGGTTCATT+CGG 0.380459 5_1:-56074264 Msa0738340:CDS
TGTCCAGCTTGGAATAACTT+TGG 0.383837 5_1:+56069792 None:intergenic
TCACCAAACCCAACATTTGT+TGG 0.386065 5_1:+56069402 None:intergenic
ACAATAATAGTAAATCTATA+TGG 0.386168 5_1:+56069520 None:intergenic
TATAGGATTTGGTCTTTCCT+TGG 0.389353 5_1:-56074889 Msa0738340:CDS
TAGCCAACAAATGTTGGGTT+TGG 0.389422 5_1:-56069405 Msa0738340:three_prime_UTR
CCTAGCTGAGAGAATGAGTA+TGG 0.392121 5_1:+56075634 None:intergenic
TGTCTTAAATATGCTTGTTA+AGG 0.392907 5_1:+56076685 None:intergenic
GTCCAGCTTGGAATAACTTT+GGG 0.396864 5_1:+56069793 None:intergenic
GAAGTGTTGGAGGGTTTACT+TGG 0.399977 5_1:-56075207 Msa0738340:CDS
GGTCCTTATTGGAAAGCAAT+TGG 0.400537 5_1:-56075186 Msa0738340:CDS
GTGGTTCTGTTTATGATGCT+TGG 0.403944 5_1:-56075998 Msa0738340:CDS
CTCTTCTTCCTCGTAATGGC+TGG 0.404036 5_1:-56072696 Msa0738340:CDS
CGTAATGGCTGGCGCGATGC+TGG 0.414035 5_1:-56072685 Msa0738340:CDS
CAAATGTTGGGTTTGGTGAT+TGG 0.414399 5_1:-56069398 Msa0738340:three_prime_UTR
GTCCCATTAACTCAGCTGTA+GGG 0.417428 5_1:-56072176 Msa0738340:CDS
GCCCCTACAGCTGAGTTAAT+GGG 0.419976 5_1:+56072174 None:intergenic
AAAGGAGGAAGTCCTGCTTC+TGG 0.424897 5_1:-56076044 Msa0738340:CDS
TGATTATAGCCAACAAATGT+TGG 0.425150 5_1:-56069411 Msa0738340:three_prime_UTR
TTGTGTTGTGCAGGTTGCTC+AGG 0.425635 5_1:-56075671 Msa0738340:intron
AAGACCAAATCCTATAGTTA+TGG 0.426171 5_1:+56074896 None:intergenic
GAAAGTTGAAACTATGTGTT+TGG 0.426438 5_1:+56076928 None:intergenic
TGTGCAGTGGTTTGAAGTGT+TGG 0.430594 5_1:-56075220 Msa0738340:intron
TTTACTATTATTGTTAATGC+TGG 0.430973 5_1:-56069511 Msa0738340:three_prime_UTR
TAAGAGTTCAAAGAGATGTT+TGG 0.430975 5_1:+56076960 None:intergenic
ATTGTAGGCTTTGGATTTGG+AGG 0.436501 5_1:-56069727 Msa0738340:CDS
TCTATGGATTGATGGGTAGT+TGG 0.437857 5_1:-56075582 Msa0738340:CDS
GATTATAGCCAACAAATGTT+GGG 0.440765 5_1:-56069410 Msa0738340:three_prime_UTR
TTGTACATAGTCTTATGTAT+TGG 0.445534 5_1:+56069320 None:intergenic
ACAAACATACTCTATACTTT+CGG 0.447950 5_1:-56074206 Msa0738340:CDS
TAGGCTTTGGATTTGGAGGG+TGG 0.452037 5_1:-56069723 Msa0738340:CDS
GCTTGTTCTGTGGAAAGAAT+TGG 0.455666 5_1:+56076730 None:intergenic
TGCAGCCATTGTTCATGGCC+AGG 0.460038 5_1:-56074827 Msa0738340:intron
CCATCAATCCATAGAAGACT+TGG 0.461378 5_1:+56075590 None:intergenic
TAATGCTGTTTCTTGCATGC+TGG 0.464976 5_1:-56076799 Msa0738340:five_prime_UTR
CAATGCGTTTGTGGTGATAT+GGG 0.469730 5_1:-56069755 Msa0738340:CDS
CGGGCCCAAAGAAAATGGTT+TGG 0.471688 5_1:-56074244 Msa0738340:CDS
GGTCCCATTAACTCAGCTGT+AGG 0.479143 5_1:-56072177 Msa0738340:CDS
AATGGTTGAGATATAAATAA+GGG 0.481247 5_1:+56076876 None:intergenic
AAAATGGTTTGGTATTTCAC+TGG 0.481269 5_1:-56074233 Msa0738340:CDS
GTGAGCATATGAGCAGAAGC+AGG 0.483246 5_1:+56072120 None:intergenic
GAGTTAATGGGACCAAAGAA+AGG 0.483622 5_1:+56072186 None:intergenic
ATCCTATAGTTATGGAATGA+AGG 0.485031 5_1:+56074904 None:intergenic
GAAGAAAGAGAGGAAGAGAA+AGG 0.487462 5_1:-56076062 Msa0738340:CDS
TAGGTCTGCTTCAGCAAGAC+AGG 0.490465 5_1:-56072094 Msa0738340:intron
TATCAGTTATGAGTTTGTGT+TGG 0.497636 5_1:+56077019 None:intergenic
CAGTGGTTTGAAGTGTTGGA+GGG 0.498755 5_1:-56075216 Msa0738340:CDS
CATTGGAATGGTCTAAAAGT+TGG 0.499848 5_1:+56072725 None:intergenic
AAAGTACAAAACCACACTAT+AGG 0.501953 5_1:+56076579 None:intergenic
TTGTAGGCTTTGGATTTGGA+GGG 0.502238 5_1:-56069726 Msa0738340:CDS
AAAGAATTGGCAGAAAATAA+CGG 0.505720 5_1:+56076743 None:intergenic
CAGCATTAAGATCTGACAAA+AGG 0.507063 5_1:+56076814 None:intergenic
TTATTGGAAAGCAATTGGAT+TGG 0.508834 5_1:-56075181 Msa0738340:CDS
GCAGTGGTTTGAAGTGTTGG+AGG 0.509217 5_1:-56075217 Msa0738340:intron
AAAGAGAAGAAAATTGAGTA+AGG 0.509846 5_1:-56076356 Msa0738340:intron
CAAGTCTTCTATGGATTGAT+GGG 0.510221 5_1:-56075589 Msa0738340:CDS
TACACCATTGTACTTTGTAT+GGG 0.512262 5_1:-56072307 Msa0738340:CDS
TGCCCAAAGTTATTCCAAGC+TGG 0.514353 5_1:-56069795 Msa0738340:CDS
CACGTTACTCTTCTCAATCA+AGG 0.514539 5_1:+56076532 None:intergenic
TGCATTGTGTGGTTGGAAGC+TGG 0.515689 5_1:+56069622 None:intergenic
GAAAGTATAGAGTATGTTTG+TGG 0.523457 5_1:+56074208 None:intergenic
AATCTTGATGCTCATTCACC+AGG 0.528000 5_1:-56072659 Msa0738340:intron
GACAGCAATGGCAGATGGTA+GGG 0.538690 5_1:+56072765 None:intergenic
TAGATAGCTTTGAACTTCTG+AGG 0.541544 5_1:+56072820 None:intergenic
GTCTAAAAGTTGGTCACCAA+AGG 0.541669 5_1:+56072735 None:intergenic
AGGCTTTGGATTTGGAGGGT+GGG 0.541795 5_1:-56069722 Msa0738340:CDS
ACCTTGCACAAGCTATGAGC+TGG 0.542123 5_1:+56075121 None:intergenic
GTATGTGATCAATGCGTTTG+TGG 0.545120 5_1:-56069764 Msa0738340:CDS
TCAGTGATGCATTGTGTGGT+TGG 0.549027 5_1:+56069615 None:intergenic
AGACAGCAATGGCAGATGGT+AGG 0.550107 5_1:+56072764 None:intergenic
AGGAAGAAGAGAGAAAGCAT+TGG 0.554247 5_1:+56072708 None:intergenic
TCCCATTAACTCAGCTGTAG+GGG 0.554568 5_1:-56072175 Msa0738340:CDS
GAAAGAGAGGAAGAGAAAGG+AGG 0.560980 5_1:-56076059 Msa0738340:CDS
TAAATGATCACTTGGACAAG+AGG 0.560995 5_1:-56074975 Msa0738340:CDS
ACATACATTAATGTCCAGCT+TGG 0.561694 5_1:+56069781 None:intergenic
TTTGTATGGGAGAAAGTGAT+AGG 0.563037 5_1:-56072294 Msa0738340:CDS
ATACTACATAAATGATCACT+TGG 0.572338 5_1:-56074983 Msa0738340:CDS
AGTCTTAAATGCTTGTTCTG+TGG 0.573579 5_1:+56076720 None:intergenic
AACATACTCTATACTTTCGG+CGG 0.574413 5_1:-56074203 Msa0738340:CDS
AAATTCTTGAAACCAGAAGC+AGG 0.578656 5_1:+56076032 None:intergenic
AACCATATTGGTATTACCAC+AGG 0.579597 5_1:+56072225 None:intergenic
TGAGCTGAATGAAGAAAGAG+AGG 0.580396 5_1:-56076072 Msa0738340:CDS
CAATAGACAGCAATGGCAGA+TGG 0.582971 5_1:+56072760 None:intergenic
ATGTGGTCATGCCAAGGCCA+AGG 0.583435 5_1:+56074872 None:intergenic
GCCATGAACAATGGCTGCAA+TGG 0.586565 5_1:+56074831 None:intergenic
TGAGCATATGAGCAGAAGCA+GGG 0.587049 5_1:+56072121 None:intergenic
TGTTGAGTACAGAAGCAGAA+AGG 0.592653 5_1:-56075533 Msa0738340:CDS
GCATGACCACATACACAGCT+TGG 0.597088 5_1:-56074861 Msa0738340:CDS
GAAGAGAGAAAGCATTGGAA+TGG 0.598851 5_1:+56072713 None:intergenic
ATCACTTGGACAAGAGGACA+TGG 0.603761 5_1:-56074969 Msa0738340:CDS
ACATACTCTATACTTTCGGC+GGG 0.607513 5_1:-56074202 Msa0738340:CDS
AGTTAATGGGACCAAAGAAA+GGG 0.609314 5_1:+56072187 None:intergenic
CCATACTCATTCTCTCAGCT+AGG 0.611915 5_1:-56075634 Msa0738340:CDS
GGATAACAGATCCAAAGAGA+AGG 0.614630 5_1:+56075142 None:intergenic
TCCAGCTCATAGCTTGTGCA+AGG 0.620806 5_1:-56075122 Msa0738340:intron
ACACTATAGGTCAATTGTTG+CGG 0.624352 5_1:+56076592 None:intergenic
CATATACCAAGCTGTGTATG+TGG 0.628165 5_1:+56074855 None:intergenic
GCATCGCGCCAGCCATTACG+AGG 0.641519 5_1:+56072688 None:intergenic
AAAGATTGCCTTGCTACACA+AGG 0.641666 5_1:+56069484 None:intergenic
GCAACAATTGACCTATAGTG+TGG 0.656406 5_1:-56076590 Msa0738340:five_prime_UTR
GGGAAATCATGCATGCAATG+TGG 0.656972 5_1:-56072846 Msa0738340:CDS
CTGGTGTTCCTTGTGTAGCA+AGG 0.659070 5_1:-56069492 Msa0738340:three_prime_UTR
CTGTGTATGTGGTCATGCCA+AGG 0.659788 5_1:+56074866 None:intergenic
AAAGGCCCAATAGACAGCAA+TGG 0.663159 5_1:+56072753 None:intergenic
GGCACTAGCAAGGTTACCTG+TGG 0.663857 5_1:-56072241 Msa0738340:CDS
TTCTCCCATACAAAGTACAA+TGG 0.665968 5_1:+56072303 None:intergenic
TGGTGTACAAGCAAATCCAA+AGG 0.675091 5_1:+56072323 None:intergenic
CAATGCATCACTGAAAAGTG+AGG 0.679418 5_1:-56069606 Msa0738340:exon
ATTTACCTGGCCATGAACAA+TGG 0.687542 5_1:+56074822 None:intergenic
AAGGCAAAAGAAAAGAACCA+AGG 0.703931 5_1:+56076551 None:intergenic
ACAATGTTATCAGAGAAACA+AGG 0.767084 5_1:-56076131 Msa0738340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTAATTTAATTTT+TGG - chr5_1:56070656-56070675 Msa0738340:intron 0.0%
!! AAAAAAAATAAAGGTAAAAA+TGG + chr5_1:56069456-56069475 None:intergenic 10.0%
!!! TATTTTTTTCTTATATTTGT+GGG + chr5_1:56070895-56070914 None:intergenic 10.0%
!!! ATATTTTTTTCTTATATTTG+TGG + chr5_1:56070896-56070915 None:intergenic 10.0%
!! TATGGTTTAATTAATTTAAT+CGG + chr5_1:56071948-56071967 None:intergenic 10.0%
!! AAATTAGATTAAAAAAGATT+TGG + chr5_1:56072198-56072217 None:intergenic 10.0%
!!! TTATTTATTTTATAAATCCA+TGG + chr5_1:56073035-56073054 None:intergenic 10.0%
!!! AGTATATATTTTAATCTTTT+AGG - chr5_1:56073133-56073152 Msa0738340:intron 10.0%
!!! GTATATATTTTAATCTTTTA+GGG - chr5_1:56073134-56073153 Msa0738340:intron 10.0%
!! ATTTGAATGATTTATAAAAT+TGG + chr5_1:56075143-56075162 None:intergenic 10.0%
!!! AATCTTTTTATCATTTAATT+TGG - chr5_1:56076884-56076903 Msa0738340:five_prime_UTR 10.0%
!! AAATAAGGGAAAAAAAATAA+AGG + chr5_1:56069465-56069484 None:intergenic 15.0%
!!! ATTTTTTTCTTATATTTGTG+GGG + chr5_1:56070894-56070913 None:intergenic 15.0%
!! TTTGATATCTCAAAAAATTA+CGG - chr5_1:56070970-56070989 Msa0738340:intron 15.0%
!!! AGACTATTTTTTAAAACTTT+AGG - chr5_1:56071067-56071086 Msa0738340:intron 15.0%
!! TTATTTGATTAGATAATTGA+AGG - chr5_1:56071283-56071302 Msa0738340:intron 15.0%
!! TGATTAAATTAAAGTTTAAC+AGG - chr5_1:56071859-56071878 Msa0738340:intron 15.0%
!!! TTTTGTTTAAATAAAAACCA+TGG - chr5_1:56072053-56072072 Msa0738340:intron 15.0%
!!! ACAATATATTTTCTATACTA+TGG - chr5_1:56072312-56072331 Msa0738340:CDS 15.0%
!! TATTTGTTTATTAGTTATCT+AGG - chr5_1:56072595-56072614 Msa0738340:intron 15.0%
!! ATTTGTTTATTAGTTATCTA+GGG - chr5_1:56072596-56072615 Msa0738340:intron 15.0%
!!! AATCAAAATAAGGTTAATTT+TGG + chr5_1:56072747-56072766 None:intergenic 15.0%
!!! CAATTGTTTTAATCAAAATA+AGG + chr5_1:56072757-56072776 None:intergenic 15.0%
!!! CTTATTTTGATTAAAACAAT+TGG - chr5_1:56072755-56072774 Msa0738340:CDS 15.0%
!! ATTTGACTAAAAAACAAAAT+AGG - chr5_1:56073168-56073187 Msa0738340:intron 15.0%
!! TTTGACTAAAAAACAAAATA+GGG - chr5_1:56073169-56073188 Msa0738340:intron 15.0%
!! AAAAACATGTTGAAATATTT+CGG + chr5_1:56073357-56073376 None:intergenic 15.0%
!!! TGTTACACTTTTTTTTTTTT+TGG + chr5_1:56073839-56073858 None:intergenic 15.0%
!! AATTTACATTTAAATAAAGC+AGG + chr5_1:56073998-56074017 None:intergenic 15.0%
!! AATGAAACCATTAAAAATTT+AGG - chr5_1:56074463-56074482 Msa0738340:intron 15.0%
!! ACAATAATAGTAAATCTATA+TGG + chr5_1:56076835-56076854 None:intergenic 15.0%
!! AATGGTTGAGATATAAATAA+GGG + chr5_1:56069479-56069498 None:intergenic 20.0%
!!! ATTTTATAACACAAAAACAG+AGG + chr5_1:56069944-56069963 None:intergenic 20.0%
!!! ATGAAGAAAAAAAGCATAAA+GGG + chr5_1:56070040-56070059 None:intergenic 20.0%
!!! TTTATGCTTTTTTTCTTCAT+GGG - chr5_1:56070040-56070059 Msa0738340:intron 20.0%
!! TTAGATTAAAAAAGATTTGG+TGG + chr5_1:56072195-56072214 None:intergenic 20.0%
!! TTTGTTTATTAGTTATCTAG+GGG - chr5_1:56072597-56072616 Msa0738340:intron 20.0%
!!! ATTTCATTACCATTTTAAAG+TGG + chr5_1:56072710-56072729 None:intergenic 20.0%
!! GTGTTATAAATGATAACAAA+AGG - chr5_1:56072792-56072811 Msa0738340:CDS 20.0%
!!! ATATTTTTTACATATGCACT+TGG - chr5_1:56072949-56072968 Msa0738340:intron 20.0%
!!! GAAAACCTATTTTAAATTTG+AGG - chr5_1:56073246-56073265 Msa0738340:intron 20.0%
!!! ATATGCCTCAAATTTAAAAT+AGG + chr5_1:56073254-56073273 None:intergenic 20.0%
!!! GAAATATTTCAACATGTTTT+TGG - chr5_1:56073356-56073375 Msa0738340:intron 20.0%
!! CAAAAATATAAATATGAACC+TGG + chr5_1:56073714-56073733 None:intergenic 20.0%
!! TTAAAACAATTAGAATCGAA+GGG + chr5_1:56073746-56073765 None:intergenic 20.0%
!!! TTTAAAACAATTAGAATCGA+AGG + chr5_1:56073747-56073766 None:intergenic 20.0%
!!! TTTTAAAATAATCTCCTGAA+TGG + chr5_1:56073881-56073900 None:intergenic 20.0%
!! TACAAAAAGTTAAACCAAAT+TGG + chr5_1:56074397-56074416 None:intergenic 20.0%
!!! CAATTTGCCTAAATTTTTAA+TGG + chr5_1:56074473-56074492 None:intergenic 20.0%
!! ATTTATACTGCCATTAATAT+AGG + chr5_1:56075110-56075129 None:intergenic 20.0%
!! GAATGATTTATAAAATTGGT+GGG + chr5_1:56075139-56075158 None:intergenic 20.0%
!! TGAATGATTTATAAAATTGG+TGG + chr5_1:56075140-56075159 None:intergenic 20.0%
!!! TTTATGATACATGATTAGTT+TGG - chr5_1:56075169-56075188 Msa0738340:CDS 20.0%
!! TTTAGAAAAAAAATAGTCAG+AGG - chr5_1:56075680-56075699 Msa0738340:intron 20.0%
!! GAGAAATTTGAGTATTTATA+TGG - chr5_1:56075796-56075815 Msa0738340:intron 20.0%
!! AAATTTGAGTATTTATATGG+TGG - chr5_1:56075799-56075818 Msa0738340:intron 20.0%
!!! TGTAGAATTTTAGTCAAATA+TGG - chr5_1:56076282-56076301 Msa0738340:intron 20.0%
!! TACTAAACAGATCTATAAAA+AGG + chr5_1:56076314-56076333 None:intergenic 20.0%
!! TTTACTATTATTGTTAATGC+TGG - chr5_1:56076841-56076860 Msa0738340:five_prime_UTR 20.0%
!!! TTGGTTTTTGATAATCATTT+TGG - chr5_1:56076903-56076922 Msa0738340:five_prime_UTR 20.0%
! ACAAACTCATAACTGATAAA+AGG - chr5_1:56069338-56069357 Msa0738340:three_prime_UTR 25.0%
! GAATGGTTGAGATATAAATA+AGG + chr5_1:56069480-56069499 None:intergenic 25.0%
! AAAGAATTGGCAGAAAATAA+CGG + chr5_1:56069612-56069631 None:intergenic 25.0%
!! TGTCTTAAATATGCTTGTTA+AGG + chr5_1:56069670-56069689 None:intergenic 25.0%
!!! CTTTTTTGCTGTTTTTAATG+AGG + chr5_1:56069894-56069913 None:intergenic 25.0%
! CTCATTAAAAACAGCAAAAA+AGG - chr5_1:56069892-56069911 Msa0738340:intron 25.0%
! AAAGAGAAGAAAATTGAGTA+AGG - chr5_1:56069996-56070015 Msa0738340:intron 25.0%
!! CATGAAGAAAAAAAGCATAA+AGG + chr5_1:56070041-56070060 None:intergenic 25.0%
!!! CTTTATGCTTTTTTTCTTCA+TGG - chr5_1:56070039-56070058 Msa0738340:intron 25.0%
!!! GATTTGATTTGATTTGTGTT+TGG - chr5_1:56070120-56070139 Msa0738340:intron 25.0%
!!! GTATTTTTTTACCTGATTTG+AGG + chr5_1:56070390-56070409 None:intergenic 25.0%
! TCAAATCCACAATTCAATAT+GGG + chr5_1:56071309-56071328 None:intergenic 25.0%
! ATCAAATCCACAATTCAATA+TGG + chr5_1:56071310-56071329 None:intergenic 25.0%
!!! TGGATTTGATAACATGTTTT+TGG - chr5_1:56071320-56071339 Msa0738340:intron 25.0%
! ATACTACATAAATGATCACT+TGG - chr5_1:56071369-56071388 Msa0738340:intron 25.0%
! AATTTAGTCCCTAAAATTGT+AGG - chr5_1:56071585-56071604 Msa0738340:intron 25.0%
!!! AACTAGTTGATGCTAATTTT+TGG + chr5_1:56071795-56071814 None:intergenic 25.0%
!! TCAATTTGAATGAGACTTTT+AGG + chr5_1:56071972-56071991 None:intergenic 25.0%
! TCAAATTGAATTTCAACAAG+TGG - chr5_1:56071983-56072002 Msa0738340:intron 25.0%
! CAAATTGAATTTCAACAAGT+GGG - chr5_1:56071984-56072003 Msa0738340:intron 25.0%
! AAATTGAATTTCAACAAGTG+GGG - chr5_1:56071985-56072004 Msa0738340:intron 25.0%
!! AATACCAAACCATTTTCTTT+GGG + chr5_1:56072115-56072134 None:intergenic 25.0%
!! AAATACCAAACCATTTTCTT+TGG + chr5_1:56072116-56072135 None:intergenic 25.0%
! ACAAACATACTCTATACTTT+CGG - chr5_1:56072146-56072165 Msa0738340:CDS 25.0%
! ATTAAGAGAAGTTTATTGCA+CGG - chr5_1:56072289-56072308 Msa0738340:CDS 25.0%
! ATAAGAAGTCCTCATTAAAA+TGG + chr5_1:56072353-56072372 None:intergenic 25.0%
! TAAGACAAAACAGTAAAATC+TGG - chr5_1:56072374-56072393 Msa0738340:intron 25.0%
! ATTAAAACAATTGGAAATGC+AGG - chr5_1:56072764-56072783 Msa0738340:CDS 25.0%
! GGCATATTAGTAAAAATAGT+AGG - chr5_1:56073267-56073286 Msa0738340:intron 25.0%
!!! ATATTTCAACATGTTTTTGG+AGG - chr5_1:56073359-56073378 Msa0738340:intron 25.0%
! TAAAACAATTAGAATCGAAG+GGG + chr5_1:56073745-56073764 None:intergenic 25.0%
! AAAAGTTCTCATATGTTTGT+TGG + chr5_1:56073772-56073791 None:intergenic 25.0%
! ATTATAGCCAAAAACCATAT+TGG + chr5_1:56074142-56074161 None:intergenic 25.0%
! GTATGTATTGGATATGTTAT+AGG + chr5_1:56074320-56074339 None:intergenic 25.0%
! AGTAAAATCTCAGTATGTAT+TGG + chr5_1:56074332-56074351 None:intergenic 25.0%
! AATTATCAAATATTGATGCG+CGG + chr5_1:56074529-56074548 None:intergenic 25.0%
!!! ACTATGAGTTTCTAGTTAAA+AGG - chr5_1:56074756-56074775 Msa0738340:intron 25.0%
!!! CTATGAGTTTCTAGTTAAAA+GGG - chr5_1:56074757-56074776 Msa0738340:intron 25.0%
!!! TATGAGTTTCTAGTTAAAAG+GGG - chr5_1:56074758-56074777 Msa0738340:intron 25.0%
! CATAACCATCAACAAATTTA+TGG + chr5_1:56074872-56074891 None:intergenic 25.0%
!!! CATAAATTTGTTGATGGTTA+TGG - chr5_1:56074870-56074889 Msa0738340:CDS 25.0%
! AAAAAAAATAGTCAGAGGAA+GGG - chr5_1:56075685-56075704 Msa0738340:intron 25.0%
! TATGAATGAAGAAGATTTGA+GGG - chr5_1:56075714-56075733 Msa0738340:intron 25.0%
! TTAAGGGAAACAGTTTATAT+TGG + chr5_1:56075950-56075969 None:intergenic 25.0%
!!! GAGGTTTTGAAATATTGTTA+TGG + chr5_1:56076215-56076234 None:intergenic 25.0%
!! AAGGTTTAAAATTGAGGTAA+TGG - chr5_1:56076241-56076260 Msa0738340:intron 25.0%
! TTGGCATTGTTTAGAAAAAT+CGG + chr5_1:56076463-56076482 None:intergenic 25.0%
! TGCCAATATTCAATTTGATT+CGG - chr5_1:56076477-56076496 Msa0738340:five_prime_UTR 25.0%
! AACCGAATCAAATTGAATAT+TGG + chr5_1:56076482-56076501 None:intergenic 25.0%
! AGTGAGGAAAAAAAAAACTA+TGG - chr5_1:56076762-56076781 Msa0738340:five_prime_UTR 25.0%
!!! TTGTACATAGTCTTATGTAT+TGG + chr5_1:56077035-56077054 None:intergenic 25.0%
TATCAGTTATGAGTTTGTGT+TGG + chr5_1:56069336-56069355 None:intergenic 30.0%
TAAGAGTTCAAAGAGATGTT+TGG + chr5_1:56069395-56069414 None:intergenic 30.0%
GAAAGTTGAAACTATGTGTT+TGG + chr5_1:56069427-56069446 None:intergenic 30.0%
! CACTGTTCTTTTCTTTCTAT+TGG - chr5_1:56069688-56069707 Msa0738340:CDS 30.0%
AAAGTACAAAACCACACTAT+AGG + chr5_1:56069776-56069795 None:intergenic 30.0%
! GTTTTGTACTTTTGTTACCT+TGG - chr5_1:56069784-56069803 Msa0738340:CDS 30.0%
! CTTTTGTGATGAAACTCAAT+AGG + chr5_1:56069980-56069999 None:intergenic 30.0%
GAAGAAAATTGAGTAAGGTT+AGG - chr5_1:56070001-56070020 Msa0738340:intron 30.0%
ACAATGTTATCAGAGAAACA+AGG - chr5_1:56070221-56070240 Msa0738340:intron 30.0%
! CTGGTTTCAAGAATTTTCTT+TGG - chr5_1:56070327-56070346 Msa0738340:intron 30.0%
! TTCAAGAATTTTCTTTGGCA+TGG - chr5_1:56070332-56070351 Msa0738340:intron 30.0%
TTTAGATTTCGATGCATGTT+TGG - chr5_1:56070415-56070434 Msa0738340:intron 30.0%
TTAATGAAGTTCGAGACTTA+CGG - chr5_1:56070513-56070532 Msa0738340:intron 30.0%
AAAGAATCTTAGTTCCAATG+AGG + chr5_1:56070589-56070608 None:intergenic 30.0%
ATCATATTCCAAGTCTTCTA+TGG - chr5_1:56070754-56070773 Msa0738340:intron 30.0%
CTTCAAAAATCATGTCATTC+AGG - chr5_1:56070858-56070877 Msa0738340:intron 30.0%
TGTTTGTAGAAAGACATTGA+TGG - chr5_1:56071096-56071115 Msa0738340:intron 30.0%
!! TTTGATTTCATTTTGTGCAG+TGG - chr5_1:56071119-56071138 Msa0738340:intron 30.0%
AATCCAATTGCTTTCCAATA+AGG + chr5_1:56071172-56071191 None:intergenic 30.0%
TTATTGGAAAGCAATTGGAT+TGG - chr5_1:56071171-56071190 Msa0738340:intron 30.0%
TACCTTCATTCCATAACTAT+AGG - chr5_1:56071446-56071465 Msa0738340:intron 30.0%
ATCCTATAGTTATGGAATGA+AGG + chr5_1:56071451-56071470 None:intergenic 30.0%
CATTCCATAACTATAGGATT+TGG - chr5_1:56071452-56071471 Msa0738340:intron 30.0%
AAGACCAAATCCTATAGTTA+TGG + chr5_1:56071459-56071478 None:intergenic 30.0%
TCAAGACATATGTATTTACC+TGG + chr5_1:56071546-56071565 None:intergenic 30.0%
! ATTCCACTCCTACAATTTTA+GGG + chr5_1:56071596-56071615 None:intergenic 30.0%
! TATTCCACTCCTACAATTTT+AGG + chr5_1:56071597-56071616 None:intergenic 30.0%
!! TCATTTTAGTACATGTGAGT+TGG + chr5_1:56071678-56071697 None:intergenic 30.0%
!!! GATGCTAATTTTTGGTTCAA+CGG + chr5_1:56071787-56071806 None:intergenic 30.0%
!!! TGAATGAGACTTTTAGGTTA+TGG + chr5_1:56071966-56071985 None:intergenic 30.0%
!!! CATTTTTTGGTTAAGGAAGT+GGG - chr5_1:56072010-56072029 Msa0738340:intron 30.0%
!!! ATTTTTTGGTTAAGGAAGTG+GGG - chr5_1:56072011-56072030 Msa0738340:intron 30.0%
!! ATTTTTGCAGGTTGAAAATG+TGG - chr5_1:56072079-56072098 Msa0738340:intron 30.0%
!! AAAATGGTTTGGTATTTCAC+TGG - chr5_1:56072119-56072138 Msa0738340:CDS 30.0%
! GAAAGTATAGAGTATGTTTG+TGG + chr5_1:56072147-56072166 None:intergenic 30.0%
!! CATTGTTTGCCACTTTAAAA+TGG - chr5_1:56072698-56072717 Msa0738340:CDS 30.0%
! TGTTTAAGGTATCATCTATG+AGG - chr5_1:56072976-56072995 Msa0738340:intron 30.0%
AATAGAGAAGTTTCCCAATA+AGG + chr5_1:56073092-56073111 None:intergenic 30.0%
TATTGGGAAACTTCTCTATT+AGG - chr5_1:56073092-56073111 Msa0738340:intron 30.0%
GAAAACAATTCCAACTCATT+TGG - chr5_1:56073206-56073225 Msa0738340:intron 30.0%
GTAAAAATAGTAGGAATGTG+AGG - chr5_1:56073276-56073295 Msa0738340:intron 30.0%
!!! ACATGTTTTTGGAGGTTTTA+CGG - chr5_1:56073367-56073386 Msa0738340:intron 30.0%
!! CTTTAAAATACGAACTGCAT+AGG - chr5_1:56073409-56073428 Msa0738340:intron 30.0%
TGTTTGAGTATACACTAACA+TGG - chr5_1:56073463-56073482 Msa0738340:intron 30.0%
ACCATGTGACTATTATTACA+GGG - chr5_1:56073486-56073505 Msa0738340:intron 30.0%
AAAACAATTAGAATCGAAGG+GGG + chr5_1:56073744-56073763 None:intergenic 30.0%
AAATTGCAGTTTATCACCTT+TGG - chr5_1:56074013-56074032 Msa0738340:intron 30.0%
TACACCATTGTACTTTGTAT+GGG - chr5_1:56074045-56074064 Msa0738340:intron 30.0%
!! ACACAAAGAGCATATTTTTG+AGG - chr5_1:56074089-56074108 Msa0738340:intron 30.0%
!! CACAAAGAGCATATTTTTGA+GGG - chr5_1:56074090-56074109 Msa0738340:intron 30.0%
! GGTAATACCAATATGGTTTT+TGG - chr5_1:56074132-56074151 Msa0738340:intron 30.0%
!!! TCACTATTTTGACATGTTGT+AGG - chr5_1:56074370-56074389 Msa0738340:intron 30.0%
GTATTGTGAAATGCTTTGAT+AGG - chr5_1:56074492-56074511 Msa0738340:intron 30.0%
!! CTTTTAGAAGTAGAAGCTTA+TGG - chr5_1:56074567-56074586 Msa0738340:intron 30.0%
CTTCAATTCGACAAAAACAT+GGG + chr5_1:56074698-56074717 None:intergenic 30.0%
AATTAAATAATTGTCCACCC+TGG - chr5_1:56074813-56074832 Msa0738340:intron 30.0%
ACCATCAACAAATTTATGGT+GGG + chr5_1:56074868-56074887 None:intergenic 30.0%
AACCATCAACAAATTTATGG+TGG + chr5_1:56074869-56074888 None:intergenic 30.0%
!! ATTTGTTGATGGTTATGGAA+AGG - chr5_1:56074875-56074894 Msa0738340:CDS 30.0%
!! ATTCGTTTGTTGTACTACTA+TGG + chr5_1:56075064-56075083 None:intergenic 30.0%
GAAGTGACTTCCTATATTAA+TGG - chr5_1:56075097-56075116 Msa0738340:intron 30.0%
ATAACTGAATGACAAAGAAG+TGG + chr5_1:56075197-56075216 None:intergenic 30.0%
CTATAGTCATATAGTACCAT+TGG - chr5_1:56075220-56075239 Msa0738340:intron 30.0%
TGTGACTTAAATAGTACCAA+TGG + chr5_1:56075239-56075258 None:intergenic 30.0%
! TTAGGTTGTGTTAAAATGTG+GGG + chr5_1:56075264-56075283 None:intergenic 30.0%
! GTTAGGTTGTGTTAAAATGT+GGG + chr5_1:56075265-56075284 None:intergenic 30.0%
! TGTTAGGTTGTGTTAAAATG+TGG + chr5_1:56075266-56075285 None:intergenic 30.0%
TAACACTATCAACTCAAGTA+GGG - chr5_1:56075281-56075300 Msa0738340:intron 30.0%
TCCAACAAATTCAGAACTTT+AGG - chr5_1:56075517-56075536 Msa0738340:CDS 30.0%
AACACAAGCAAACTCAAATA+TGG - chr5_1:56075564-56075583 Msa0738340:CDS 30.0%
ATATGGTGGTAAAGAATATG+AGG - chr5_1:56075581-56075600 Msa0738340:CDS 30.0%
TATGAGGAACAATCTTTGTA+TGG - chr5_1:56075597-56075616 Msa0738340:CDS 30.0%
GAAAAAAAATAGTCAGAGGA+AGG - chr5_1:56075684-56075703 Msa0738340:intron 30.0%
CTATGAATGAAGAAGATTTG+AGG - chr5_1:56075713-56075732 Msa0738340:intron 30.0%
TTATCAGTGAAAGGATGAAA+CGG - chr5_1:56075741-56075760 Msa0738340:intron 30.0%
!!! ATATGGTGGATGTTTTATGT+TGG - chr5_1:56075813-56075832 Msa0738340:intron 30.0%
!!! TATGGTGGATGTTTTATGTT+GGG - chr5_1:56075814-56075833 Msa0738340:intron 30.0%
TTATATTGGATAAGAGTGGA+CGG + chr5_1:56075936-56075955 None:intergenic 30.0%
CAGTTTATATTGGATAAGAG+TGG + chr5_1:56075940-56075959 None:intergenic 30.0%
TGTAAGGATACTTGAGTTTA+GGG + chr5_1:56076067-56076086 None:intergenic 30.0%
! ATAATGAGAACATGTCACTT+AGG + chr5_1:56076134-56076153 None:intergenic 30.0%
! AATTTTAAACCTTGATGAGG+AGG + chr5_1:56076234-56076253 None:intergenic 30.0%
! CTCAATTTTAAACCTTGATG+AGG + chr5_1:56076237-56076256 None:intergenic 30.0%
! CTCATCAAGGTTTAAAATTG+AGG - chr5_1:56076235-56076254 Msa0738340:intron 30.0%
!! TGTCAATCGTAGTTGATTTT+GGG + chr5_1:56076379-56076398 None:intergenic 30.0%
GATAATAGTTCAATGTGGTT+CGG - chr5_1:56076423-56076442 Msa0738340:five_prime_UTR 30.0%
CATTGTTTAGAAAAATCGGA+CGG + chr5_1:56076459-56076478 None:intergenic 30.0%
! ATCAAACAAGTTGACACATT+TGG - chr5_1:56076670-56076689 Msa0738340:five_prime_UTR 30.0%
GGTGATTAAACAAAAAGAGA+GGG + chr5_1:56076814-56076833 None:intergenic 30.0%
TGGTGATTAAACAAAAAGAG+AGG + chr5_1:56076815-56076834 None:intergenic 30.0%
TGATTATAGCCAACAAATGT+TGG - chr5_1:56076941-56076960 Msa0738340:five_prime_UTR 30.0%
GATTATAGCCAACAAATGTT+GGG - chr5_1:56076942-56076961 Msa0738340:five_prime_UTR 30.0%
CAGCATTAAGATCTGACAAA+AGG + chr5_1:56069541-56069560 None:intergenic 35.0%
AGTCTTAAATGCTTGTTCTG+TGG + chr5_1:56069635-56069654 None:intergenic 35.0%
ACACTATAGGTCAATTGTTG+CGG + chr5_1:56069763-56069782 None:intergenic 35.0%
AAGGCAAAAGAAAAGAACCA+AGG + chr5_1:56069804-56069823 None:intergenic 35.0%
!!! TGCTTTTTTTCTTCATGGGT+TGG - chr5_1:56070044-56070063 Msa0738340:intron 35.0%
AAATTCTTGAAACCAGAAGC+AGG + chr5_1:56070323-56070342 None:intergenic 35.0%
! AAGAATTTTCTTTGGCATGG+TGG - chr5_1:56070335-56070354 Msa0738340:intron 35.0%
CAGTGAGTTTAACGAAATCA+CGG + chr5_1:56070544-56070563 None:intergenic 35.0%
!!! CTTTGACTGTGACCTTTTTT+TGG - chr5_1:56070605-56070624 Msa0738340:intron 35.0%
!!! TTTTTGGTTTTGTGTTGTGC+AGG - chr5_1:56070672-56070691 Msa0738340:intron 35.0%
! CAAGTCTTCTATGGATTGAT+GGG - chr5_1:56070763-56070782 Msa0738340:intron 35.0%
AAAATCATGTCATTCAGGTG+AGG - chr5_1:56070863-56070882 Msa0738340:intron 35.0%
! TGTGATCGGAATTTTTGTAG+CGG - chr5_1:56071002-56071021 Msa0738340:intron 35.0%
TAAATGATCACTTGGACAAG+AGG - chr5_1:56071377-56071396 Msa0738340:intron 35.0%
! AGGACATGGACTTACATTTT+TGG - chr5_1:56071397-56071416 Msa0738340:intron 35.0%
! TATAGGATTTGGTCTTTCCT+TGG - chr5_1:56071463-56071482 Msa0738340:intron 35.0%
GCATCAACTAGTTCATTAGT+TGG - chr5_1:56071802-56071821 Msa0738340:intron 35.0%
CGGTTCAACTATGATTGAAT+CGG + chr5_1:56071928-56071947 None:intergenic 35.0%
CCACTTCCTTAACCAAAAAA+TGG + chr5_1:56072012-56072031 None:intergenic 35.0%
!!! CCATTTTTTGGTTAAGGAAG+TGG - chr5_1:56072009-56072028 Msa0738340:intron 35.0%
!! AAACCATGGTTCATTTTTGC+AGG - chr5_1:56072067-56072086 Msa0738340:intron 35.0%
GGTTGAAAATGTGGTTCATT+CGG - chr5_1:56072088-56072107 Msa0738340:intron 35.0%
GTTGAAAATGTGGTTCATTC+GGG - chr5_1:56072089-56072108 Msa0738340:intron 35.0%
AACATACTCTATACTTTCGG+CGG - chr5_1:56072149-56072168 Msa0738340:CDS 35.0%
!! CTTTTGCCTCCATTTTAATG+AGG - chr5_1:56072341-56072360 Msa0738340:intron 35.0%
AGAAGTCCTCATTAAAATGG+AGG + chr5_1:56072350-56072369 None:intergenic 35.0%
TACACTATTGTCTTGGCTAA+CGG - chr5_1:56072414-56072433 Msa0738340:intron 35.0%
TGAGGTAAAATGTCTCTTAG+GGG + chr5_1:56072519-56072538 None:intergenic 35.0%
GTGAGGTAAAATGTCTCTTA+GGG + chr5_1:56072520-56072539 None:intergenic 35.0%
AAATTAGTACACACATCGTG+AGG + chr5_1:56072537-56072556 None:intergenic 35.0%
AAACAATTGGAAATGCAGGA+TGG - chr5_1:56072768-56072787 Msa0738340:CDS 35.0%
! ATGCACTTGGTTCTTGTTTA+AGG - chr5_1:56072962-56072981 Msa0738340:intron 35.0%
GGTATCATCTATGAGGAAAT+TGG - chr5_1:56072983-56073002 Msa0738340:intron 35.0%
TACACTGTTCTTTGCCTTAT+TGG - chr5_1:56073075-56073094 Msa0738340:intron 35.0%
! ACACTGTTCTTTGCCTTATT+GGG - chr5_1:56073076-56073095 Msa0738340:intron 35.0%
TGTGATATGTCCAAATGAGT+TGG + chr5_1:56073219-56073238 None:intergenic 35.0%
TCATAGGGTGAGAAAAGTAA+TGG + chr5_1:56073302-56073321 None:intergenic 35.0%
!! ATTACTTTTCTCACCCTATG+AGG - chr5_1:56073301-56073320 Msa0738340:intron 35.0%
!!! CATGTTTTTGGAGGTTTTAC+GGG - chr5_1:56073368-56073387 Msa0738340:intron 35.0%
GACCATGTGACTATTATTAC+AGG - chr5_1:56073485-56073504 Msa0738340:intron 35.0%
TCCCTGTAATAATAGTCACA+TGG + chr5_1:56073490-56073509 None:intergenic 35.0%
!! TAGATAGCTTTGAACTTCTG+AGG + chr5_1:56073535-56073554 None:intergenic 35.0%
CATTGGAATGGTCTAAAAGT+TGG + chr5_1:56073630-56073649 None:intergenic 35.0%
AAACAATTAGAATCGAAGGG+GGG + chr5_1:56073743-56073762 None:intergenic 35.0%
GTACACCATTGTACTTTGTA+TGG - chr5_1:56074044-56074063 Msa0738340:intron 35.0%
TTCTCCCATACAAAGTACAA+TGG + chr5_1:56074052-56074071 None:intergenic 35.0%
TTTGTATGGGAGAAAGTGAT+AGG - chr5_1:56074058-56074077 Msa0738340:intron 35.0%
TACCTGTGGTAATACCAATA+TGG - chr5_1:56074125-56074144 Msa0738340:intron 35.0%
AACCATATTGGTATTACCAC+AGG + chr5_1:56074130-56074149 None:intergenic 35.0%
GCTATAATCTTCCCTTTCTT+TGG - chr5_1:56074154-56074173 Msa0738340:intron 35.0%
AGTTAATGGGACCAAAGAAA+GGG + chr5_1:56074168-56074187 None:intergenic 35.0%
TGTGAAATGCTTTGATAGGA+CGG - chr5_1:56074496-56074515 Msa0738340:intron 35.0%
!! GTACTGGTTTGACTAAAACA+TGG - chr5_1:56074628-56074647 Msa0738340:intron 35.0%
!!! AGTTTTGAGGCACATATGTT+CGG + chr5_1:56074658-56074677 None:intergenic 35.0%
GCTTCAATTCGACAAAAACA+TGG + chr5_1:56074699-56074718 None:intergenic 35.0%
TTACGGCTAAGAAAGTGATT+TGG + chr5_1:56074725-56074744 None:intergenic 35.0%
CCATATTGATAGATAGTCCA+GGG + chr5_1:56074833-56074852 None:intergenic 35.0%
ACCATATTGATAGATAGTCC+AGG + chr5_1:56074834-56074853 None:intergenic 35.0%
!! CAAATTTATGGTGGGTTCTA+CGG + chr5_1:56074860-56074879 None:intergenic 35.0%
!! ACCCACCATAAATTTGTTGA+TGG - chr5_1:56074864-56074883 Msa0738340:CDS 35.0%
ATGGTTATGGAAAGGTTAGA+TGG - chr5_1:56074883-56074902 Msa0738340:CDS 35.0%
TGGTTATGGAAAGGTTAGAT+GGG - chr5_1:56074884-56074903 Msa0738340:CDS 35.0%
CAAACGAATTATATGCTGCT+TGG - chr5_1:56075075-56075094 Msa0738340:intron 35.0%
!! CTACTTGAGTTGATAGTGTT+AGG + chr5_1:56075282-56075301 None:intergenic 35.0%
CTAACACTATCAACTCAAGT+AGG - chr5_1:56075280-56075299 Msa0738340:intron 35.0%
AACACTATCAACTCAAGTAG+GGG - chr5_1:56075282-56075301 Msa0738340:intron 35.0%
TTACCGAGATTTCGGTTTAT+CGG - chr5_1:56075408-56075427 Msa0738340:intron 35.0%
AAACCGATAAACCGAAATCT+CGG + chr5_1:56075414-56075433 None:intergenic 35.0%
!! GCCTAAAGTTCTGAATTTGT+TGG + chr5_1:56075521-56075540 None:intergenic 35.0%
ACAAGCAAACTCAAATATGG+TGG - chr5_1:56075567-56075586 Msa0738340:CDS 35.0%
TCTGCAGATATGCTAATTCT+AGG - chr5_1:56075767-56075786 Msa0738340:intron 35.0%
CTGCAGATATGCTAATTCTA+GGG - chr5_1:56075768-56075787 Msa0738340:intron 35.0%
! TGGATGTTTTATGTTGGGTT+GGG - chr5_1:56075819-56075838 Msa0738340:intron 35.0%
AATTGAACCAGCTGTGTATT+CGG - chr5_1:56075868-56075887 Msa0738340:intron 35.0%
GTGTAAGGATACTTGAGTTT+AGG + chr5_1:56076068-56076087 None:intergenic 35.0%
ATTTCAAAACCTCCTCATCA+AGG - chr5_1:56076222-56076241 Msa0738340:intron 35.0%
!! CTGTCAATCGTAGTTGATTT+TGG + chr5_1:56076380-56076399 None:intergenic 35.0%
ATCAACTACGATTGACAGTT+TGG - chr5_1:56076382-56076401 Msa0738340:five_prime_UTR 35.0%
TATTATCGCTAGTGCACAAA+CGG + chr5_1:56076410-56076429 None:intergenic 35.0%
CTAGCGATAATAGTTCAATG+TGG - chr5_1:56076418-56076437 Msa0738340:five_prime_UTR 35.0%
ACATACATTAATGTCCAGCT+TGG + chr5_1:56076574-56076593 None:intergenic 35.0%
! GTGATATGGGTTACTATTGT+AGG - chr5_1:56076610-56076629 Msa0738340:five_prime_UTR 35.0%
!! ACTATTGTAGGCTTTGGATT+TGG - chr5_1:56076622-56076641 Msa0738340:five_prime_UTR 35.0%
GTTGGCTATAATCAAGTCTA+TGG + chr5_1:56076935-56076954 None:intergenic 35.0%
! TGTGCTGTGTGTTTTCTGTT+TGG + chr5_1:56069310-56069329 None:intergenic 40.0%
AGAGAGAGAGAGTTGAAGAA+TGG + chr5_1:56069497-56069516 None:intergenic 40.0%
!! TAATGCTGTTTCTTGCATGC+TGG - chr5_1:56069553-56069572 Msa0738340:three_prime_UTR 40.0%
GCTTGTTCTGTGGAAAGAAT+TGG + chr5_1:56069625-56069644 None:intergenic 40.0%
GCAACAATTGACCTATAGTG+TGG - chr5_1:56069762-56069781 Msa0738340:CDS 40.0%
CACGTTACTCTTCTCAATCA+AGG + chr5_1:56069823-56069842 None:intergenic 40.0%
TGAGCTGAATGAAGAAAGAG+AGG - chr5_1:56070280-56070299 Msa0738340:intron 40.0%
GAAGAAAGAGAGGAAGAGAA+AGG - chr5_1:56070290-56070309 Msa0738340:intron 40.0%
! GTGGTTCTGTTTATGATGCT+TGG - chr5_1:56070354-56070373 Msa0738340:intron 40.0%
TTCGATGCATGTTTGGACTT+TGG - chr5_1:56070422-56070441 Msa0738340:intron 40.0%
ATGAGGAGACTGATTGGATA+TGG + chr5_1:56070572-56070591 None:intergenic 40.0%
TATCCAATCAGTCTCCTCAT+TGG - chr5_1:56070572-56070591 Msa0738340:intron 40.0%
!!! TGTGACCTTTTTTTGGTGTG+TGG - chr5_1:56070612-56070631 Msa0738340:intron 40.0%
CTCTTCCACACACCAAAAAA+AGG + chr5_1:56070620-56070639 None:intergenic 40.0%
TCTCAGCTAGGAATGATTTC+AGG - chr5_1:56070730-56070749 Msa0738340:intron 40.0%
CCATCAATCCATAGAAGACT+TGG + chr5_1:56070765-56070784 None:intergenic 40.0%
! CCAAGTCTTCTATGGATTGA+TGG - chr5_1:56070762-56070781 Msa0738340:intron 40.0%
! TCTATGGATTGATGGGTAGT+TGG - chr5_1:56070770-56070789 Msa0738340:intron 40.0%
TGTTGAGTACAGAAGCAGAA+AGG - chr5_1:56070819-56070838 Msa0738340:intron 40.0%
TACGGTCAAATCGATGTGAT+CGG - chr5_1:56070988-56071007 Msa0738340:intron 40.0%
GATGAAAAATCTCGTGGTCA+CGG - chr5_1:56071028-56071047 Msa0738340:intron 40.0%
ATAGTCTGCAACTGCAATTG+CGG + chr5_1:56071054-56071073 None:intergenic 40.0%
AGGGTTTACTTGGTCCTTAT+TGG - chr5_1:56071155-56071174 Msa0738340:intron 40.0%
GGTCCTTATTGGAAAGCAAT+TGG - chr5_1:56071166-56071185 Msa0738340:intron 40.0%
AACTGCACTTTCCTTCTCTT+TGG - chr5_1:56071199-56071218 Msa0738340:intron 40.0%
GGATAACAGATCCAAAGAGA+AGG + chr5_1:56071213-56071232 None:intergenic 40.0%
TGAAGGCCCATATTGAATTG+TGG - chr5_1:56071300-56071319 Msa0738340:intron 40.0%
CATATACCAAGCTGTGTATG+TGG + chr5_1:56071500-56071519 None:intergenic 40.0%
ATTTACCTGGCCATGAACAA+TGG + chr5_1:56071533-56071552 None:intergenic 40.0%
AGTCCCTAAAATTGTAGGAG+TGG - chr5_1:56071590-56071609 Msa0738340:intron 40.0%
!! TCAACGGATTGAATTGTGCT+CGG + chr5_1:56071771-56071790 None:intergenic 40.0%
TGCATGATCATATCGTAGTC+TGG - chr5_1:56071829-56071848 Msa0738340:intron 40.0%
! TCAACCACAGTCGATTCAAT+CGG - chr5_1:56071893-56071912 Msa0738340:intron 40.0%
AAAACCGATTGAATCGACTG+TGG + chr5_1:56071900-56071919 None:intergenic 40.0%
!!! AACAAGTGGGGTCCATTTTT+TGG - chr5_1:56071997-56072016 Msa0738340:intron 40.0%
!!! TGGGGTCCATTTTTTGGTTA+AGG - chr5_1:56072003-56072022 Msa0738340:intron 40.0%
CAACCTGCAAAAATGAACCA+TGG + chr5_1:56072073-56072092 None:intergenic 40.0%
ACATACTCTATACTTTCGGC+GGG - chr5_1:56072150-56072169 Msa0738340:CDS 40.0%
AGCCAAGACAATAGTGTAGT+GGG + chr5_1:56072412-56072431 None:intergenic 40.0%
TAGCCAAGACAATAGTGTAG+TGG + chr5_1:56072413-56072432 None:intergenic 40.0%
TAAAATGTCTCTTAGGGGGA+AGG + chr5_1:56072514-56072533 None:intergenic 40.0%
GAGGTAAAATGTCTCTTAGG+GGG + chr5_1:56072518-56072537 None:intergenic 40.0%
CGTGAGGTAAAATGTCTCTT+AGG + chr5_1:56072521-56072540 None:intergenic 40.0%
AGCTCAGATGATTCATGCAT+GGG - chr5_1:56073008-56073027 Msa0738340:intron 40.0%
AGGTTCTCGTACGTTCTATT+CGG - chr5_1:56073321-56073340 Msa0738340:intron 40.0%
! TACGGGATTTTTACGCAGTT+CGG - chr5_1:56073385-56073404 Msa0738340:intron 40.0%
ATCTGCCATTGCTGTCTATT+GGG - chr5_1:56073594-56073613 Msa0738340:intron 40.0%
! GTCTAAAAGTTGGTCACCAA+AGG + chr5_1:56073620-56073639 None:intergenic 40.0%
!! GAAGAGAGAAAGCATTGGAA+TGG + chr5_1:56073642-56073661 None:intergenic 40.0%
! AGGAAGAAGAGAGAAAGCAT+TGG + chr5_1:56073647-56073666 None:intergenic 40.0%
TTCTCTCTTCTTCCTCGTAA+TGG - chr5_1:56073652-56073671 Msa0738340:intron 40.0%
AATCTTGATGCTCATTCACC+AGG - chr5_1:56073693-56073712 Msa0738340:intron 40.0%
AACAATTAGAATCGAAGGGG+GGG + chr5_1:56073742-56073761 None:intergenic 40.0%
TCCTGAATGGAACATACTTG+AGG + chr5_1:56073868-56073887 None:intergenic 40.0%
TGGTGTACAAGCAAATCCAA+AGG + chr5_1:56074032-56074051 None:intergenic 40.0%
!!! TATTTTTGAGGGCACTAGCA+AGG - chr5_1:56074101-56074120 Msa0738340:intron 40.0%
GAGTTAATGGGACCAAAGAA+AGG + chr5_1:56074169-56074188 None:intergenic 40.0%
CTGCTCATATGCTCACTTAT+AGG - chr5_1:56074239-56074258 Msa0738340:CDS 40.0%
GACATGTTGTAGGTCCAATT+TGG - chr5_1:56074380-56074399 Msa0738340:intron 40.0%
!! CAATCACGAGTTGAGTTTTG+AGG + chr5_1:56074671-56074690 None:intergenic 40.0%
!! GGCTAAGAAAGTGATTTGGT+CGG + chr5_1:56074721-56074740 None:intergenic 40.0%
CATAGTCCTTCTCGTCTTTA+CGG + chr5_1:56074742-56074761 None:intergenic 40.0%
TATTGATAGATAGTCCAGGG+TGG + chr5_1:56074830-56074849 None:intergenic 40.0%
CCCTGGACTATCTATCAATA+TGG - chr5_1:56074830-56074849 Msa0738340:CDS 40.0%
! GAGATTTCGGTTTATCGGTT+TGG - chr5_1:56075413-56075432 Msa0738340:intron 40.0%
TTAATCATCCCAGACGAAAC+CGG + chr5_1:56075453-56075472 None:intergenic 40.0%
GTATGGAGTGAAAAGATCTC+TGG - chr5_1:56075614-56075633 Msa0738340:CDS 40.0%
! GTGGATGTTTTATGTTGGGT+TGG - chr5_1:56075818-56075837 Msa0738340:intron 40.0%
GTGATGACAATAAGGCAAAC+GGG + chr5_1:56076004-56076023 None:intergenic 40.0%
CGTGATGACAATAAGGCAAA+CGG + chr5_1:56076005-56076024 None:intergenic 40.0%
! CGTTTGCCTTATTGTCATCA+CGG - chr5_1:56076003-56076022 Msa0738340:CDS 40.0%
! GTTTGCCTTATTGTCATCAC+GGG - chr5_1:56076004-56076023 Msa0738340:CDS 40.0%
! TGATCACTGAGTACTGTGTA+AGG + chr5_1:56076083-56076102 None:intergenic 40.0%
!! ATCGTAGTTGATTTTGGGCA+CGG + chr5_1:56076374-56076393 None:intergenic 40.0%
!! TAGTTCAATGTGGTTCGGTT+TGG - chr5_1:56076428-56076447 Msa0738340:five_prime_UTR 40.0%
! TTCTCTGCAGCATTCTGAAA+AGG + chr5_1:56076535-56076554 None:intergenic 40.0%
GTCCAGCTTGGAATAACTTT+GGG + chr5_1:56076562-56076581 None:intergenic 40.0%
TGTCCAGCTTGGAATAACTT+TGG + chr5_1:56076563-56076582 None:intergenic 40.0%
GTATGTGATCAATGCGTTTG+TGG - chr5_1:56076588-56076607 Msa0738340:five_prime_UTR 40.0%
TCAATGCGTTTGTGGTGATA+TGG - chr5_1:56076596-56076615 Msa0738340:five_prime_UTR 40.0%
CAATGCGTTTGTGGTGATAT+GGG - chr5_1:56076597-56076616 Msa0738340:five_prime_UTR 40.0%
TGGGTTACTATTGTAGGCTT+TGG - chr5_1:56076616-56076635 Msa0738340:five_prime_UTR 40.0%
!! ATTGTAGGCTTTGGATTTGG+AGG - chr5_1:56076625-56076644 Msa0738340:five_prime_UTR 40.0%
!! TTGTAGGCTTTGGATTTGGA+GGG - chr5_1:56076626-56076645 Msa0738340:five_prime_UTR 40.0%
! CTTTTCAGTGATGCATTGTG+TGG + chr5_1:56076744-56076763 None:intergenic 40.0%
CAATGCATCACTGAAAAGTG+AGG - chr5_1:56076746-56076765 Msa0738340:five_prime_UTR 40.0%
AAAGATTGCCTTGCTACACA+AGG + chr5_1:56076871-56076890 None:intergenic 40.0%
TAGCCAACAAATGTTGGGTT+TGG - chr5_1:56076947-56076966 Msa0738340:five_prime_UTR 40.0%
TCACCAAACCCAACATTTGT+TGG + chr5_1:56076953-56076972 None:intergenic 40.0%
!! CAAATGTTGGGTTTGGTGAT+TGG - chr5_1:56076954-56076973 Msa0738340:five_prime_UTR 40.0%
!! TGGGTTTGGTGATTGGTAAT+TGG - chr5_1:56076961-56076980 Msa0738340:five_prime_UTR 40.0%
GAAAGAGAGGAAGAGAAAGG+AGG - chr5_1:56070293-56070312 Msa0738340:intron 45.0%
GTTTAGCTGTGCCTCAAATC+AGG - chr5_1:56070376-56070395 Msa0738340:intron 45.0%
GGATTCACAGTGAAATCAGC+AGG - chr5_1:56070443-56070462 Msa0738340:intron 45.0%
CAGTGAAATCAGCAGGATCA+CGG - chr5_1:56070450-56070469 Msa0738340:intron 45.0%
GTTCCAATGAGGAGACTGAT+TGG + chr5_1:56070578-56070597 None:intergenic 45.0%
CCTAGCTGAGAGAATGAGTA+TGG + chr5_1:56070721-56070740 None:intergenic 45.0%
CCATACTCATTCTCTCAGCT+AGG - chr5_1:56070718-56070737 Msa0738340:intron 45.0%
CGGAGAGATGAAAAATCTCG+TGG - chr5_1:56071022-56071041 Msa0738340:intron 45.0%
! TGTGCAGTGGTTTGAAGTGT+TGG - chr5_1:56071132-56071151 Msa0738340:intron 45.0%
!! CAGTGGTTTGAAGTGTTGGA+GGG - chr5_1:56071136-56071155 Msa0738340:intron 45.0%
!! GAAGTGTTGGAGGGTTTACT+TGG - chr5_1:56071145-56071164 Msa0738340:intron 45.0%
ATCACTTGGACAAGAGGACA+TGG - chr5_1:56071383-56071402 Msa0738340:intron 45.0%
! ATTTGGTCTTTCCTTGGCCT+TGG - chr5_1:56071469-56071488 Msa0738340:intron 45.0%
ACCATTGCAGCCATTGTTCA+TGG - chr5_1:56071520-56071539 Msa0738340:intron 45.0%
TCATTCGGGCCCAAAGAAAA+TGG - chr5_1:56072103-56072122 Msa0738340:CDS 45.0%
CACCCACTACACTATTGTCT+TGG - chr5_1:56072407-56072426 Msa0738340:intron 45.0%
CAGCTCAGATGATTCATGCA+TGG - chr5_1:56073007-56073026 Msa0738340:intron 45.0%
ATGATTCATGCATGGGACCA+TGG - chr5_1:56073015-56073034 Msa0738340:intron 45.0%
GAACGTACGAGAACCTCATA+GGG + chr5_1:56073317-56073336 None:intergenic 45.0%
AGAACGTACGAGAACCTCAT+AGG + chr5_1:56073318-56073337 None:intergenic 45.0%
GGGAAATCATGCATGCAATG+TGG - chr5_1:56073506-56073525 Msa0738340:intron 45.0%
CAATAGACAGCAATGGCAGA+TGG + chr5_1:56073595-56073614 None:intergenic 45.0%
CATCTGCCATTGCTGTCTAT+TGG - chr5_1:56073593-56073612 Msa0738340:intron 45.0%
AAAGGCCCAATAGACAGCAA+TGG + chr5_1:56073602-56073621 None:intergenic 45.0%
ATTGCTGTCTATTGGGCCTT+TGG - chr5_1:56073601-56073620 Msa0738340:intron 45.0%
GCCTCAAGTATGTTCCATTC+AGG - chr5_1:56073864-56073883 Msa0738340:intron 45.0%
GTCCCATTAACTCAGCTGTA+GGG - chr5_1:56074176-56074195 Msa0738340:intron 45.0%
TCCCATTAACTCAGCTGTAG+GGG - chr5_1:56074177-56074196 Msa0738340:intron 45.0%
TGAGCATATGAGCAGAAGCA+GGG + chr5_1:56074234-56074253 None:intergenic 45.0%
GAAATGCTTTGATAGGACGG+TGG - chr5_1:56074499-56074518 Msa0738340:intron 45.0%
TATGGTCCTTCTTGTCCTCA+CGG - chr5_1:56074585-56074604 Msa0738340:intron 45.0%
TCTTAGCCGTAAAGACGAGA+AGG - chr5_1:56074733-56074752 Msa0738340:intron 45.0%
ACTATCAACTCAAGTAGGGG+TGG - chr5_1:56075285-56075304 Msa0738340:intron 45.0%
! GTTACGGCGGAATGAGTTTT+TGG + chr5_1:56075341-56075360 None:intergenic 45.0%
AAGCTGAAACGGACGAAGAT+GGG + chr5_1:56075384-56075403 None:intergenic 45.0%
ATCTTCGTCCGTTTCAGCTT+CGG - chr5_1:56075384-56075403 Msa0738340:intron 45.0%
TCGGTAAACCGAAGCTGAAA+CGG + chr5_1:56075395-56075414 None:intergenic 45.0%
GCTTCGGTTTACCGAGATTT+CGG - chr5_1:56075400-56075419 Msa0738340:intron 45.0%
!! GGTTTATCGGTTTGGTCACA+CGG - chr5_1:56075421-56075440 Msa0738340:intron 45.0%
TCCCTTCTCTCTCACGAATA+GGG + chr5_1:56075656-56075675 None:intergenic 45.0%
GAGGGAGAGTTATCAGTGAA+AGG - chr5_1:56075732-56075751 Msa0738340:intron 45.0%
!!! TGTTTTATGTTGGGTTGGGC+TGG - chr5_1:56075823-56075842 Msa0738340:intron 45.0%
!!! GTTTTATGTTGGGTTGGGCT+GGG - chr5_1:56075824-56075843 Msa0738340:intron 45.0%
! TTGGGCTGGGAAAATCTGTT+GGG - chr5_1:56075837-56075856 Msa0738340:intron 45.0%
GGGAAAATCTGTTGGGCTTA+AGG - chr5_1:56075844-56075863 Msa0738340:intron 45.0%
AACCAGCTGTGTATTCGGTT+CGG - chr5_1:56075873-56075892 Msa0738340:intron 45.0%
ATGACAATAAGGCAAACGGG+CGG + chr5_1:56076001-56076020 None:intergenic 45.0%
! AGTTTAGGGCTGGACAGATT+GGG + chr5_1:56076053-56076072 None:intergenic 45.0%
! AGGATACTTGAGTTTAGGGC+TGG + chr5_1:56076063-56076082 None:intergenic 45.0%
TGCCCAAAGTTATTCCAAGC+TGG - chr5_1:56076557-56076576 Msa0738340:five_prime_UTR 45.0%
!!! CTGGTAGTTTTGGTGGACAT+TGG + chr5_1:56076714-56076733 None:intergenic 45.0%
!!! TTGGAAGCTGGTAGTTTTGG+TGG + chr5_1:56076721-56076740 None:intergenic 45.0%
! TGGTTGGAAGCTGGTAGTTT+TGG + chr5_1:56076724-56076743 None:intergenic 45.0%
TCAGTGATGCATTGTGTGGT+TGG + chr5_1:56076740-56076759 None:intergenic 45.0%
AAAGGAGGAAGTCCTGCTTC+TGG - chr5_1:56070308-56070327 Msa0738340:intron 50.0%
TTGTGTTGTGCAGGTTGCTC+AGG - chr5_1:56070681-56070700 Msa0738340:intron 50.0%
!! GCAGTGGTTTGAAGTGTTGG+AGG - chr5_1:56071135-56071154 Msa0738340:intron 50.0%
! TCCAGCTCATAGCTTGTGCA+AGG - chr5_1:56071230-56071249 Msa0738340:intron 50.0%
ACCTTGCACAAGCTATGAGC+TGG + chr5_1:56071234-56071253 None:intergenic 50.0%
CTGTGTATGTGGTCATGCCA+AGG + chr5_1:56071489-56071508 None:intergenic 50.0%
GCATGACCACATACACAGCT+TGG - chr5_1:56071491-56071510 Msa0738340:intron 50.0%
GCCATGAACAATGGCTGCAA+TGG + chr5_1:56071524-56071543 None:intergenic 50.0%
GAATCGACTGTGGTTGAACG+AGG + chr5_1:56071890-56071909 None:intergenic 50.0%
CGGGCCCAAAGAAAATGGTT+TGG - chr5_1:56072108-56072127 Msa0738340:CDS 50.0%
GACAGCAATGGCAGATGGTA+GGG + chr5_1:56073590-56073609 None:intergenic 50.0%
AGACAGCAATGGCAGATGGT+AGG + chr5_1:56073591-56073610 None:intergenic 50.0%
CTCTTCTTCCTCGTAATGGC+TGG - chr5_1:56073656-56073675 Msa0738340:intron 50.0%
TTAGAATCGAAGGGGGGGAA+TGG + chr5_1:56073737-56073756 None:intergenic 50.0%
GGTCCCATTAACTCAGCTGT+AGG - chr5_1:56074175-56074194 Msa0738340:intron 50.0%
GCCCCTACAGCTGAGTTAAT+GGG + chr5_1:56074181-56074200 None:intergenic 50.0%
AGCCCCTACAGCTGAGTTAA+TGG + chr5_1:56074182-56074201 None:intergenic 50.0%
GTGAGCATATGAGCAGAAGC+AGG + chr5_1:56074235-56074254 None:intergenic 50.0%
TAGGTCTGCTTCAGCAAGAC+AGG - chr5_1:56074258-56074277 Msa0738340:CDS 50.0%
TCTCAACCGTGAGGACAAGA+AGG + chr5_1:56074594-56074613 None:intergenic 50.0%
TCTTGTCCTCACGGTTGAGA+CGG - chr5_1:56074594-56074613 Msa0738340:intron 50.0%
GACGGTGACTTGATCAGTAC+TGG - chr5_1:56074612-56074631 Msa0738340:intron 50.0%
!!! GAGTTTTTGGCCCCGAAAAC+CGG + chr5_1:56075328-56075347 None:intergenic 50.0%
AGCTGAAACGGACGAAGATG+GGG + chr5_1:56075383-56075402 None:intergenic 50.0%
GAAGCTGAAACGGACGAAGA+TGG + chr5_1:56075385-56075404 None:intergenic 50.0%
!! TCGGTTTGGTCACACGGTTT+CGG - chr5_1:56075427-56075446 Msa0738340:intron 50.0%
ACCCCTATTCGTGAGAGAGA+AGG - chr5_1:56075651-56075670 Msa0738340:CDS 50.0%
CCCTTCTCTCTCACGAATAG+GGG + chr5_1:56075655-56075674 None:intergenic 50.0%
CCCCTATTCGTGAGAGAGAA+GGG - chr5_1:56075652-56075671 Msa0738340:CDS 50.0%
CTCCCTTCTCTCTCACGAAT+AGG + chr5_1:56075657-56075676 None:intergenic 50.0%
! GTTGGGCTGGGAAAATCTGT+TGG - chr5_1:56075836-56075855 Msa0738340:intron 50.0%
ACCAGCTGTGTATTCGGTTC+GGG - chr5_1:56075874-56075893 Msa0738340:intron 50.0%
!! CTGTGTATTCGGTTCGGGTT+CGG - chr5_1:56075879-56075898 Msa0738340:intron 50.0%
TGGATAAGAGTGGACGGCAT+CGG + chr5_1:56075930-56075949 None:intergenic 50.0%
!! TAGAAACGGGTTAGGCGGTT+GGG + chr5_1:56075977-56075996 None:intergenic 50.0%
TGACAATAAGGCAAACGGGC+GGG + chr5_1:56076000-56076019 None:intergenic 50.0%
! GAGTTTAGGGCTGGACAGAT+TGG + chr5_1:56076054-56076073 None:intergenic 50.0%
!! TAGGCTTTGGATTTGGAGGG+TGG - chr5_1:56076629-56076648 Msa0738340:five_prime_UTR 50.0%
!! AGGCTTTGGATTTGGAGGGT+GGG - chr5_1:56076630-56076649 Msa0738340:five_prime_UTR 50.0%
TGCATTGTGTGGTTGGAAGC+TGG + chr5_1:56076733-56076752 None:intergenic 50.0%
CTGGTGTTCCTTGTGTAGCA+AGG - chr5_1:56076860-56076879 Msa0738340:five_prime_UTR 50.0%
ATGTGGTCATGCCAAGGCCA+AGG + chr5_1:56071483-56071502 None:intergenic 55.0%
TGCAGCCATTGTTCATGGCC+AGG - chr5_1:56071525-56071544 Msa0738340:intron 55.0%
GGCACTAGCAAGGTTACCTG+TGG - chr5_1:56074111-56074130 Msa0738340:intron 55.0%
! CTCAGCTGTAGGGGCTCTTT+TGG - chr5_1:56074186-56074205 Msa0738340:intron 55.0%
AAGTCACCGTCTCAACCGTG+AGG + chr5_1:56074603-56074622 None:intergenic 55.0%
ACTCAAGTAGGGGTGGACAG+CGG - chr5_1:56075292-56075311 Msa0738340:intron 55.0%
GCTGAAACGGACGAAGATGG+GGG + chr5_1:56075382-56075401 None:intergenic 55.0%
TTTGGTCACACGGTTTCGGC+CGG - chr5_1:56075431-56075450 Msa0738340:intron 55.0%
ACCCGAACCGAATACACAGC+TGG + chr5_1:56075878-56075897 None:intergenic 55.0%
!! TTCGGTTCGGGTTCGGTTAC+TGG - chr5_1:56075886-56075905 Msa0738340:intron 55.0%
! ATAAGAGTGGACGGCATCGG+GGG + chr5_1:56075927-56075946 None:intergenic 55.0%
GATAAGAGTGGACGGCATCG+GGG + chr5_1:56075928-56075947 None:intergenic 55.0%
GGATAAGAGTGGACGGCATC+GGG + chr5_1:56075929-56075948 None:intergenic 55.0%
!! GTAGAAACGGGTTAGGCGGT+TGG + chr5_1:56075978-56075997 None:intergenic 55.0%
! GCCTTATTGTCATCACGGGC+CGG - chr5_1:56076008-56076027 Msa0738340:CDS 55.0%
AAGTAGGGGTGGACAGCGGA+CGG - chr5_1:56075296-56075315 Msa0738340:intron 60.0%
!! GGACGGTTTCGGCCGGTTTT+CGG - chr5_1:56075313-56075332 Msa0738340:intron 60.0%
!! GACGGTTTCGGCCGGTTTTC+GGG - chr5_1:56075314-56075333 Msa0738340:intron 60.0%
!! ACGGTTTCGGCCGGTTTTCG+GGG - chr5_1:56075315-56075334 Msa0738340:intron 60.0%
ACTCATTCCGCCGTAACCCG+CGG - chr5_1:56075344-56075363 Msa0738340:intron 60.0%
! GTAGTGTCACCCGCGGGTTA+CGG + chr5_1:56075357-56075376 None:intergenic 60.0%
! GGTTTCGGCCGGTTTCGTCT+GGG - chr5_1:56075442-56075461 Msa0738340:intron 60.0%
! GGTTCGGGTTCGGTTACTGG+TGG - chr5_1:56075889-56075908 Msa0738340:intron 60.0%
! TAAGAGTGGACGGCATCGGG+GGG + chr5_1:56075926-56075945 None:intergenic 60.0%
!! TAGGCGGTTGGGCGGGTTAA+GGG + chr5_1:56075966-56075985 None:intergenic 60.0%
!! TTAGGCGGTTGGGCGGGTTA+AGG + chr5_1:56075967-56075986 None:intergenic 60.0%
!! AAACGGGTTAGGCGGTTGGG+CGG + chr5_1:56075974-56075993 None:intergenic 60.0%
!! GCGGGTAGAAACGGGTTAGG+CGG + chr5_1:56075982-56076001 None:intergenic 60.0%
GCAAACGGGCGGGTAGAAAC+GGG + chr5_1:56075990-56076009 None:intergenic 60.0%
GGCAAACGGGCGGGTAGAAA+CGG + chr5_1:56075991-56076010 None:intergenic 60.0%
GCCGGCCCGTGATGACAATA+AGG + chr5_1:56076012-56076031 None:intergenic 60.0%
TATTGTCATCACGGGCCGGC+CGG - chr5_1:56076012-56076031 Msa0738340:CDS 60.0%
GCATCGCGCCAGCCATTACG+AGG + chr5_1:56073667-56073686 None:intergenic 65.0%
CGTAATGGCTGGCGCGATGC+TGG - chr5_1:56073667-56073686 Msa0738340:intron 65.0%
GGGTGGACAGCGGACGGTTT+CGG - chr5_1:56075302-56075321 Msa0738340:intron 65.0%
CTCATTCCGCCGTAACCCGC+GGG - chr5_1:56075345-56075364 Msa0738340:intron 65.0%
GGGGTTGTAGTGTCACCCGC+GGG + chr5_1:56075363-56075382 None:intergenic 65.0%
GGGGGTTGTAGTGTCACCCG+CGG + chr5_1:56075364-56075383 None:intergenic 65.0%
! CGGTTTCGGCCGGTTTCGTC+TGG - chr5_1:56075441-56075460 Msa0738340:intron 65.0%
!! AACGGGTTAGGCGGTTGGGC+GGG + chr5_1:56075973-56075992 None:intergenic 65.0%
! CGGGCGGGTAGAAACGGGTT+AGG + chr5_1:56075985-56076004 None:intergenic 65.0%
!! ATCACGGGCCGGCCGGTTTT+GGG - chr5_1:56076019-56076038 Msa0738340:CDS 65.0%
GGACAGCGGACGGTTTCGGC+CGG - chr5_1:56075306-56075325 Msa0738340:intron 70.0%
! GTGTCACCCGCGGGTTACGG+CGG + chr5_1:56075354-56075373 None:intergenic 70.0%
!! CATCACGGGCCGGCCGGTTT+TGG - chr5_1:56076018-56076037 Msa0738340:CDS 70.0%
TGGGCCGACCCGCCCAAAAC+CGG + chr5_1:56076034-56076053 None:intergenic 70.0%
! GTGGACGGCATCGGGGGGTG+TGG + chr5_1:56075921-56075940 None:intergenic 75.0%
!!! ACGGGCCGGCCGGTTTTGGG+CGG - chr5_1:56076022-56076041 Msa0738340:CDS 75.0%
CCGACCCGCCCAAAACCGGC+CGG + chr5_1:56076030-56076049 None:intergenic 75.0%
!!! CCGGCCGGTTTTGGGCGGGT+CGG - chr5_1:56076027-56076046 Msa0738340:CDS 75.0%
!!! CGGGCCGGCCGGTTTTGGGC+GGG - chr5_1:56076023-56076042 Msa0738340:CDS 80.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 56069306 56077068 56069306 ID=Msa0738340;Name=Msa0738340
chr5_1 mRNA 56069306 56077068 56069306 ID=Msa0738340-mRNA-1;Parent=Msa0738340;Name=Msa0738340-mRNA-1;_AED=0.08;_eAED=0.08;_QI=733|1|1|1|0.87|0.77|9|309|479
chr5_1 exon 56069306 56069833 56069306 ID=Msa0738340-mRNA-1:exon:15875;Parent=Msa0738340-mRNA-1
chr5_1 exon 56072095 56072352 56072095 ID=Msa0738340-mRNA-1:exon:15874;Parent=Msa0738340-mRNA-1
chr5_1 exon 56072660 56072867 56072660 ID=Msa0738340-mRNA-1:exon:15873;Parent=Msa0738340-mRNA-1
chr5_1 exon 56074188 56074285 56074188 ID=Msa0738340-mRNA-1:exon:15872;Parent=Msa0738340-mRNA-1
chr5_1 exon 56074828 56075011 56074828 ID=Msa0738340-mRNA-1:exon:15871;Parent=Msa0738340-mRNA-1
chr5_1 exon 56075123 56075235 56075123 ID=Msa0738340-mRNA-1:exon:15870;Parent=Msa0738340-mRNA-1
chr5_1 exon 56075495 56075680 56075495 ID=Msa0738340-mRNA-1:exon:15869;Parent=Msa0738340-mRNA-1
chr5_1 exon 56075977 56076171 56075977 ID=Msa0738340-mRNA-1:exon:15868;Parent=Msa0738340-mRNA-1
chr5_1 exon 56076357 56077068 56076357 ID=Msa0738340-mRNA-1:exon:15867;Parent=Msa0738340-mRNA-1
chr5_1 five_prime_UTR 56076357 56077068 56076357 ID=Msa0738340-mRNA-1:five_prime_utr;Parent=Msa0738340-mRNA-1
chr5_1 five_prime_UTR 56076151 56076171 56076151 ID=Msa0738340-mRNA-1:five_prime_utr;Parent=Msa0738340-mRNA-1
chr5_1 CDS 56075977 56076150 56075977 ID=Msa0738340-mRNA-1:cds;Parent=Msa0738340-mRNA-1
chr5_1 CDS 56075495 56075680 56075495 ID=Msa0738340-mRNA-1:cds;Parent=Msa0738340-mRNA-1
chr5_1 CDS 56075123 56075235 56075123 ID=Msa0738340-mRNA-1:cds;Parent=Msa0738340-mRNA-1
chr5_1 CDS 56074828 56075011 56074828 ID=Msa0738340-mRNA-1:cds;Parent=Msa0738340-mRNA-1
chr5_1 CDS 56074188 56074285 56074188 ID=Msa0738340-mRNA-1:cds;Parent=Msa0738340-mRNA-1
chr5_1 CDS 56072660 56072867 56072660 ID=Msa0738340-mRNA-1:cds;Parent=Msa0738340-mRNA-1
chr5_1 CDS 56072095 56072352 56072095 ID=Msa0738340-mRNA-1:cds;Parent=Msa0738340-mRNA-1
chr5_1 CDS 56069615 56069833 56069615 ID=Msa0738340-mRNA-1:cds;Parent=Msa0738340-mRNA-1
chr5_1 three_prime_UTR 56069306 56069614 56069306 ID=Msa0738340-mRNA-1:three_prime_utr;Parent=Msa0738340-mRNA-1
Gene Sequence

>Msa0738340

ATGTTATCAGAGAAACAAGGTGAAGAAACAATGATGTCAAGTCTTAATGAAACAACTGAGCTGAATGAAGAAAGAGAGGAAGAGAAAGGAGGAAGTCCTGCTTCTGGTTTCAAGAATTTTCTTTGGCATGGTGGTTCTGTTTATGATGCTTGGTTTAGCTGTGCCTCAAATCAGGTTGCTCAGGTTCTGTTGACACTGCCATACTCATTCTCTCAGCTAGGAATGATTTCAGGCATCATATTCCAAGTCTTCTATGGATTGATGGGTAGTTGGACTGCTTATTTGATTAGCATTCTGTATGTTGAGTACAGAAGCAGAAAGGAGAAAGAGAATGTCAGCTTCAAAAATCATGTCATTCAGTGGTTTGAAGTGTTGGAGGGTTTACTTGGTCCTTATTGGAAAGCAATTGGATTGGCTTTCAACTGCACTTTCCTTCTCTTTGGATCTGTTATCCAGCTCATAGCTTGTGCAAGTAACATATACTACATAAATGATCACTTGGACAAGAGGACATGGACTTACATTTTTGGAGCTTGTTGTGCTACAACAGTGTTCATACCTTCATTCCATAACTATAGGATTTGGTCTTTCCTTGGCCTTGGCATGACCACATACACAGCTTGGTATATGACCATTGCAGCCATTGTTCATGGCCAGGTTGAAAATGTGGTTCATTCGGGCCCAAAGAAAATGGTTTGGTATTTCACTGGCGCCACAAACATACTCTATACTTTCGGCGGGCACGCAGTGACAGTGGAAATCATGCATGCAATGTGGAAACCTCAGAAGTTCAAAGCTATCTATTTCTTTGCTACTCTTTATGTGTTCACACTTACCCTACCATCTGCCATTGCTGTCTATTGGGCCTTTGGTGACCAACTTTTAGACCATTCCAATGCTTTCTCTCTTCTTCCTCGTAATGGCTGGCGCGATGCTGGTGTAATCTTGATGCTCATTCACCAGTTTATCACCTTTGGATTTGCTTGTACACCATTGTACTTTGTATGGGAGAAAGTGATAGGAATGCATGACACAAAGAGCATATTTTTGAGGGCACTAGCAAGGTTACCTGTGGTAATACCAATATGGTTTTTGGCTATAATCTTCCCTTTCTTTGGTCCCATTAACTCAGCTGTAGGGGCTCTTTTGGTTAGTTTCACTGTCTATGTCATCCCTGCTTCTGCTCATATGCTCACTTATAGGTCTGCTTCAGCAAGACAGAATGCTGCAGAGAAATTGCCCAAAGTTATTCCAAGCTGGACATTAATGTATGTGATCAATGCGTTTGTGGTGATATGGGTTACTATTGTAGGCTTTGGATTTGGAGGGTGGGCTAGTATGACAAACTTCATCAAACAAGTTGACACATTTGGATTATTTGCTAAATGCTACCAATGTCCACCAAAACTACCAGCTTCCAACCACACAATGCATCACTGA
Protein sequence

>Msa0738340

MLSEKQGEETMMSSLNETTELNEEREEEKGGSPASGFKNFLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMISGIIFQVFYGLMGSWTAYLISILYVEYRSRKEKENVSFKNHVIQWFEVLEGLLGPYWKAIGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYMTIAAIVHGQVENVVHSGPKKMVWYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYFFATLYVFTLTLPSAIAVYWAFGDQLLDHSNAFSLLPRNGWRDAGVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSIFLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYVIPASAHMLTYRSASARQNAAEKLPKVIPSWTLMYVINAFVVIWVTIVGFGFGGWASMTNFIKQVDTFGLFAKCYQCPPKLPASNHTMHH*