AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1239410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1239410 MtrunA17_Chr8g0351071 99.338 151 1 0 1 151 1 151 8.20e-108 303
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1239410 AT2G45640.1 67.550 151 48 1 1 150 1 151 2.36e-59 181
Msa1239410 AT2G45640.2 66.225 151 47 2 1 150 1 148 8.47e-56 172

Find 51 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCTGCCGCCTTGTCGTTT+TGG 0.303236 8_2:-21123307 None:intergenic
CTATGTAACTTTGTTGTGTT+TGG 0.315683 8_2:+21127531 Msa1239410:three_prime_UTR
GACTAAATGATAGTATAAAA+TGG 0.317147 8_2:+21127836 Msa1239410:three_prime_UTR
GAGACCATCATAATGAAAAT+AGG 0.323944 8_2:-21127788 None:intergenic
TAAATCTGAACTTCATCTTT+CGG 0.356836 8_2:-21123567 None:intergenic
GAGCAGATCTCTAGTTTCTA+TGG 0.357723 8_2:+21127713 Msa1239410:three_prime_UTR
TAACAACTAAACATTCTAAA+AGG 0.361567 8_2:-21127611 None:intergenic
GGCAAGGCTTTAGCCGATCT+TGG 0.386747 8_2:+21127378 Msa1239410:CDS
GCGTTTCTTCTTCTTGCAGC+AGG 0.399744 8_2:-21125968 None:intergenic
CCTCTTGGTGGTGGAGGTAA+TGG 0.405437 8_2:-21123328 None:intergenic
GTGCTGCTCCTGTGTGATGA+TGG 0.417704 8_2:+21127553 Msa1239410:three_prime_UTR
GTGGGCAAGACATTGTCTTA+TGG 0.420586 8_2:+21127336 Msa1239410:CDS
GATGGAGGAGGCGGACCTCT+TGG 0.424184 8_2:-21123343 None:intergenic
TGCGCAGATTGGTGATTACT+TGG 0.452787 8_2:+21127476 Msa1239410:intron
GGACGGGAGGATGGAGGAGG+CGG 0.460368 8_2:-21123352 None:intergenic
GATGATGGTCTTCAAACATT+TGG 0.462624 8_2:+21127568 Msa1239410:three_prime_UTR
TCTCTAGTTTCTATGGCTAC+TGG 0.464226 8_2:+21127720 Msa1239410:three_prime_UTR
GGCGGACCTCTTGGTGGTGG+AGG 0.473936 8_2:-21123334 None:intergenic
GGAGGCGGACCTCTTGGTGG+TGG 0.474246 8_2:-21123337 None:intergenic
CGAGGACGGGAGGATGGAGG+AGG 0.477646 8_2:-21123355 None:intergenic
CTTTACCTCAAAACCAAGAT+CGG 0.479352 8_2:-21127391 None:intergenic
CTCCGTGTGTTCACTAAGAT+AGG 0.484530 8_2:+21123501 Msa1239410:CDS
AAGACATTGTCTTATGGAAC+TGG 0.485281 8_2:+21127342 Msa1239410:CDS
GATAGGAAGCCATCATTCAA+TGG 0.497710 8_2:+21123518 Msa1239410:CDS
AACTGGTTCGAGACGAGGAC+GGG 0.498527 8_2:-21123368 None:intergenic
CGAACCAGTTGATCGCGAAA+AGG 0.502030 8_2:+21123381 Msa1239410:CDS
GGAGGAGGCGGACCTCTTGG+TGG 0.505652 8_2:-21123340 None:intergenic
TTACCTCTTGAACTTTGAAA+CGG 0.506136 8_2:-21126030 None:intergenic
TCGAGACGAGGACGGGAGGA+TGG 0.508378 8_2:-21123361 None:intergenic
GAAGAGAATGAGTAGTGTGA+AGG 0.539240 8_2:+21123186 None:intergenic
GTGAACACACGGAGGAGCAA+GGG 0.568130 8_2:-21123492 None:intergenic
GATTGGTGATTACTTGGATG+TGG 0.571029 8_2:+21127482 Msa1239410:intron
ATGAAGTTCAGATTTATACA+TGG 0.575884 8_2:+21123574 Msa1239410:CDS
CTCGAAGAAATGAGCGACGG+AGG 0.579538 8_2:+21123283 Msa1239410:exon
AGTGAACACACGGAGGAGCA+AGG 0.581241 8_2:-21123493 None:intergenic
CGAAAGAATACATACAAGAT+CGG 0.582794 8_2:-21123622 None:intergenic
TGGCCGTTTCAAAGTTCAAG+AGG 0.586342 8_2:+21126027 Msa1239410:CDS
CGATCAACTGGTTCGAGACG+AGG 0.592470 8_2:-21123373 None:intergenic
GGAACTGGAAGATTAGATGA+TGG 0.596367 8_2:+21127357 Msa1239410:CDS
AGACGAGGACGGGAGGATGG+AGG 0.601741 8_2:-21123358 None:intergenic
TGGTTCGAGACGAGGACGGG+AGG 0.604236 8_2:-21123365 None:intergenic
TGAACACACGGAGGAGCAAG+GGG 0.609653 8_2:-21123491 None:intergenic
CAACTGGTTCGAGACGAGGA+CGG 0.612970 8_2:-21123369 None:intergenic
TGGAAGATTAGATGATGGCA+AGG 0.613081 8_2:+21127362 Msa1239410:CDS
GACGGAGGACCAAAACGACA+AGG 0.629621 8_2:+21123298 Msa1239410:CDS
TTCCTATCTTAGTGAACACA+CGG 0.638856 8_2:-21123503 None:intergenic
CCATTACCTCCACCACCAAG+AGG 0.666000 8_2:+21123328 Msa1239410:CDS
AGTCTCGAAGAAATGAGCGA+CGG 0.704284 8_2:+21123280 Msa1239410:exon
GGAGGACCAAAACGACAAGG+CGG 0.709504 8_2:+21123301 Msa1239410:CDS
TTTGAAGACCATCATCACAC+AGG 0.714749 8_2:-21127561 None:intergenic
CTATCTTAGTGAACACACGG+AGG 0.795134 8_2:-21123500 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGTAATATTATTATAGAT+AGG + chr8_2:21124371-21124390 Msa1239410:intron 10.0%
!!! TATTAATGTATATTTTGTAT+AGG + chr8_2:21125931-21125950 Msa1239410:intron 10.0%
!! AGTTATTGAATAAACTAAAA+AGG - chr8_2:21125351-21125370 None:intergenic 15.0%
!! TAAATATTATATGTATCAGA+GGG - chr8_2:21126433-21126452 None:intergenic 15.0%
!! ATAAATATTATATGTATCAG+AGG - chr8_2:21126434-21126453 None:intergenic 15.0%
!! TTTAAACATGTTAAAAGTTA+AGG + chr8_2:21126660-21126679 Msa1239410:intron 15.0%
!!! ACTTTCATAATTTGTTATAT+TGG - chr8_2:21126978-21126997 None:intergenic 15.0%
!!! ATAACTTTTTGGAAAAAATA+TGG - chr8_2:21127225-21127244 None:intergenic 15.0%
!! AAAAAAAAAAGACAAGATAA+TGG + chr8_2:21127753-21127772 Msa1239410:three_prime_UTR 15.0%
!!! ATAAAAAGAAGTTAGGTTTT+AGG - chr8_2:21123430-21123449 None:intergenic 20.0%
!! TATAGGTTATTAGGTTTATT+TGG + chr8_2:21123835-21123854 Msa1239410:intron 20.0%
!!! ATTGTTTTTATAAGCTTTTG+TGG + chr8_2:21124196-21124215 Msa1239410:intron 20.0%
!! ATTATTATAGATAGGCTTAT+AGG + chr8_2:21124379-21124398 Msa1239410:intron 20.0%
!! TGTGAATAAGTGTTTAATTA+AGG + chr8_2:21124429-21124448 Msa1239410:intron 20.0%
!! GTGAATAAGTGTTTAATTAA+GGG + chr8_2:21124430-21124449 Msa1239410:intron 20.0%
!! TTAATGATGATATACTCTAT+TGG + chr8_2:21124473-21124492 Msa1239410:intron 20.0%
!! ATATAAACCATGAATAAACT+AGG - chr8_2:21124629-21124648 None:intergenic 20.0%
!! TAGTTTATTCATGGTTTATA+TGG + chr8_2:21124628-21124647 Msa1239410:intron 20.0%
!!! TTGTTTTCAGCTTAAAAAAA+TGG + chr8_2:21125118-21125137 Msa1239410:intron 20.0%
!!! CTTTATTCATTTGTTTTTGA+AGG - chr8_2:21125535-21125554 None:intergenic 20.0%
!! TTCAAATTATTAGTCAGAAT+AGG + chr8_2:21125574-21125593 Msa1239410:intron 20.0%
!!! CTTATAACGGAATTTTAATT+AGG - chr8_2:21125623-21125642 None:intergenic 20.0%
!! TCAATAAGAAATGAAAAAGT+AGG + chr8_2:21125815-21125834 Msa1239410:intron 20.0%
!!! GTTATAACGGAATTTTAATT+AGG - chr8_2:21125849-21125868 None:intergenic 20.0%
!! CCAAAAACTAAAAGTTATAA+CGG - chr8_2:21125862-21125881 None:intergenic 20.0%
!!! TATAACTTTTAGTTTTTGGA+TGG + chr8_2:21125863-21125882 Msa1239410:intron 20.0%
!!! TAATGTGTTTTGCTTTTTTT+GGG + chr8_2:21126159-21126178 Msa1239410:intron 20.0%
!! TGAAATAAATACTACATCAT+TGG + chr8_2:21126241-21126260 Msa1239410:intron 20.0%
!!! CAAGTCAAAAGATTTTATAT+TGG - chr8_2:21126397-21126416 None:intergenic 20.0%
!!! TTTTGACTTGTATTATTGTT+GGG + chr8_2:21126407-21126426 Msa1239410:intron 20.0%
!! TATAAATTACTTGTGTTTGT+GGG - chr8_2:21126607-21126626 None:intergenic 20.0%
!! TTATAAATTACTTGTGTTTG+TGG - chr8_2:21126608-21126627 None:intergenic 20.0%
!!! TCATTTTAGGGTTATTATTA+AGG - chr8_2:21126873-21126892 None:intergenic 20.0%
!! TTAATAATAACCCTAAAATG+AGG + chr8_2:21126872-21126891 Msa1239410:intron 20.0%
!! TAATAATAACCCTAAAATGA+GGG + chr8_2:21126873-21126892 Msa1239410:intron 20.0%
!!! AAAAGATAGGAATAACTTTT+TGG - chr8_2:21127236-21127255 None:intergenic 20.0%
!! TAACAACTAAACATTCTAAA+AGG - chr8_2:21127614-21127633 None:intergenic 20.0%
! GAATGGAATAAAAAGAAGTT+AGG - chr8_2:21123437-21123456 None:intergenic 25.0%
! AAAATTAACAAGGTCAAGAA+TGG - chr8_2:21123454-21123473 None:intergenic 25.0%
! GGAAATAGAGAAAATTAACA+AGG - chr8_2:21123464-21123483 None:intergenic 25.0%
! AAAAATCATCCATTGAATGA+TGG - chr8_2:21123530-21123549 None:intergenic 25.0%
! TAAATCTGAACTTCATCTTT+CGG - chr8_2:21123570-21123589 None:intergenic 25.0%
! ATGAAGTTCAGATTTATACA+TGG + chr8_2:21123574-21123593 Msa1239410:CDS 25.0%
!!! TCGCAGTGTTTTTATTTTTT+TGG + chr8_2:21123642-21123661 Msa1239410:intron 25.0%
!!! CGCAGTGTTTTTATTTTTTT+GGG + chr8_2:21123643-21123662 Msa1239410:intron 25.0%
! AAAAACAGCATTAGGATTAT+AGG + chr8_2:21123818-21123837 Msa1239410:intron 25.0%
! CATTAGGATTATAGGTTATT+AGG + chr8_2:21123826-21123845 Msa1239410:intron 25.0%
!!! TTAATTTGCACTTTTGTCTA+AGG + chr8_2:21123867-21123886 Msa1239410:intron 25.0%
!!! TAATTTGCACTTTTGTCTAA+GGG + chr8_2:21123868-21123887 Msa1239410:intron 25.0%
!!! TTATGTGTAAGCTATTTCTA+TGG + chr8_2:21123892-21123911 Msa1239410:intron 25.0%
!!! TATGTGTAAGCTATTTCTAT+GGG + chr8_2:21123893-21123912 Msa1239410:intron 25.0%
!!! TTTGTTTTCATAAGCTATCT+TGG + chr8_2:21123942-21123961 Msa1239410:intron 25.0%
! AAACACTTGTAAGACTATTT+GGG - chr8_2:21124030-21124049 None:intergenic 25.0%
! AAAACACTTGTAAGACTATT+TGG - chr8_2:21124031-21124050 None:intergenic 25.0%
!! ACATGTTTAGAAGATGTTTT+CGG - chr8_2:21124240-21124259 None:intergenic 25.0%
!! AATTTTACACTAATGTCCAA+TGG - chr8_2:21124567-21124586 None:intergenic 25.0%
! ATGAATAAACTAGGAGAAAA+GGG - chr8_2:21124620-21124639 None:intergenic 25.0%
! TGAGTGAGCTTAAAAAAAAA+TGG + chr8_2:21124694-21124713 Msa1239410:intron 25.0%
! ATAAACCGTAAAATGAGAAA+AGG - chr8_2:21125028-21125047 None:intergenic 25.0%
! ATGATCATCAATAAAACAGA+AGG - chr8_2:21125436-21125455 None:intergenic 25.0%
!! TGTATTCAACAATTTTTCCA+TGG + chr8_2:21125489-21125508 Msa1239410:intron 25.0%
! AGAATAGGAAATGAAAATGT+AGG + chr8_2:21125589-21125608 Msa1239410:intron 25.0%
! AGGACAATATTCTCTTATAA+CGG - chr8_2:21125636-21125655 None:intergenic 25.0%
! ATGATCATCAATAAAACAGA+AGG - chr8_2:21125436-21125455 None:intergenic 25.0%
!! TGTATTCAACAATTTTTCCA+TGG + chr8_2:21125489-21125508 Msa1239410:intron 25.0%
! AGAAATGAAAAAGTAGGAAA+TGG + chr8_2:21125821-21125840 Msa1239410:intron 25.0%
! GAAATGAAAAAGTAGGAAAT+GGG + chr8_2:21125822-21125841 Msa1239410:intron 25.0%
! AAATGAAAAAGTAGGAAATG+GGG + chr8_2:21125823-21125842 Msa1239410:intron 25.0%
!!! CCGTTATAACTTTTAGTTTT+TGG + chr8_2:21125859-21125878 Msa1239410:intron 25.0%
!!! ATTTCTTTTTAGCTTGTGAT+TGG + chr8_2:21125905-21125924 Msa1239410:intron 25.0%
! TTTGTGTTTCCTGATAAAAA+TGG + chr8_2:21126007-21126026 Msa1239410:CDS 25.0%
! TATGCACAAAAAGAAAATCA+TGG - chr8_2:21126098-21126117 None:intergenic 25.0%
!!! GTAATGTGTTTTGCTTTTTT+TGG + chr8_2:21126158-21126177 Msa1239410:intron 25.0%
! ATTTCACAATTAAACCAACT+TGG - chr8_2:21126227-21126246 None:intergenic 25.0%
!!! GAGTATTATAGAGTTTTTTG+TGG + chr8_2:21126290-21126309 Msa1239410:intron 25.0%
!!! CTTTTGACTTGTATTATTGT+TGG + chr8_2:21126406-21126425 Msa1239410:intron 25.0%
! TCACTTCAAGATTCATATAT+TGG + chr8_2:21126535-21126554 Msa1239410:intron 25.0%
! CACTTCAAGATTCATATATT+GGG + chr8_2:21126536-21126555 Msa1239410:intron 25.0%
! ACTTCAAGATTCATATATTG+GGG + chr8_2:21126537-21126556 Msa1239410:intron 25.0%
!! TTTTCAAACTTGTGCAAAAT+AGG - chr8_2:21126762-21126781 None:intergenic 25.0%
!! CTTTTTACAGCATATACATT+TGG - chr8_2:21127182-21127201 None:intergenic 25.0%
!!! AATCATTTTTGCAAAGAAAC+TGG - chr8_2:21127658-21127677 None:intergenic 25.0%
! AAAAATGATTGATTGCCAAT+TGG + chr8_2:21127668-21127687 Msa1239410:three_prime_UTR 25.0%
!!! GAAGTTAGGTTTTAGGTTTA+GGG - chr8_2:21123423-21123442 None:intergenic 30.0%
!!! AGAAGTTAGGTTTTAGGTTT+AGG - chr8_2:21123424-21123443 None:intergenic 30.0%
!! ATGGATGATTTTTCAGTTAG+AGG + chr8_2:21123537-21123556 Msa1239410:CDS 30.0%
!! TGGATGATTTTTCAGTTAGA+GGG + chr8_2:21123538-21123557 Msa1239410:CDS 30.0%
CGAAAGAATACATACAAGAT+CGG - chr8_2:21123625-21123644 None:intergenic 30.0%
!!! ATGCTGTTTTTTCTTTTGGT+CGG - chr8_2:21123809-21123828 None:intergenic 30.0%
!!! CCTAATGCTGTTTTTTCTTT+TGG - chr8_2:21123813-21123832 None:intergenic 30.0%
CCAAAAGAAAAAACAGCATT+AGG + chr8_2:21123810-21123829 Msa1239410:intron 30.0%
! AATTTGCACTTTTGTCTAAG+GGG + chr8_2:21123869-21123888 Msa1239410:intron 30.0%
! GTCTTACAAGTGTTTTATGT+CGG + chr8_2:21124035-21124054 Msa1239410:intron 30.0%
!!! TGTTTTGGAACATTATAGAG+AGG + chr8_2:21124110-21124129 Msa1239410:intron 30.0%
!!! ACTGTTTTGGAACATTGTAT+AGG + chr8_2:21124163-21124182 Msa1239410:intron 30.0%
TGTTTAATTAAGGGTGAGTT+TGG + chr8_2:21124439-21124458 Msa1239410:intron 30.0%
TCATGATTTCTCAAAGATGT+CGG - chr8_2:21124516-21124535 None:intergenic 30.0%
CATGAATAAACTAGGAGAAA+AGG - chr8_2:21124621-21124640 None:intergenic 30.0%
! CTTTTCTCCTAGTTTATTCA+TGG + chr8_2:21124619-21124638 Msa1239410:intron 30.0%
! TAACCATAGACACTTTTGTA+AGG + chr8_2:21124661-21124680 Msa1239410:intron 30.0%
!! AAACCTTACAAAAGTGTCTA+TGG - chr8_2:21124667-21124686 None:intergenic 30.0%
TTTCAACTTATTGAGAGCTT+AGG + chr8_2:21124747-21124766 Msa1239410:intron 30.0%
GCAAAATTCTTGATACTCAT+TGG + chr8_2:21124955-21124974 Msa1239410:intron 30.0%
! TGTCTCCTTTTCTCATTTTA+CGG + chr8_2:21125020-21125039 Msa1239410:intron 30.0%
ATAGCATAAACACTTCTGTA+AGG + chr8_2:21125061-21125080 Msa1239410:intron 30.0%
TTTCAACTTATTTAGCGCTT+AGG + chr8_2:21125164-21125183 Msa1239410:intron 30.0%
CAATCTCTATAATCGAAGAT+GGG - chr8_2:21125230-21125249 None:intergenic 30.0%
TCAATCTCTATAATCGAAGA+TGG - chr8_2:21125231-21125250 None:intergenic 30.0%
! CAATAACTGCAAAATGCTTT+TGG + chr8_2:21125363-21125382 Msa1239410:intron 30.0%
GGAAATGAAAATGTAGGAAA+CGG + chr8_2:21125595-21125614 Msa1239410:intron 30.0%
GAAATGAAAATGTAGGAAAC+GGG + chr8_2:21125596-21125615 Msa1239410:intron 30.0%
AAATGAAAATGTAGGAAACG+GGG + chr8_2:21125597-21125616 Msa1239410:intron 30.0%
!!! CTTTATTCCTTTGTTTTCGA+AGG - chr8_2:21125756-21125775 None:intergenic 30.0%
! TTTTGTATAGGTCAAAGAAG+TGG + chr8_2:21125943-21125962 Msa1239410:intron 30.0%
! TTACCTCTTGAACTTTGAAA+CGG - chr8_2:21126033-21126052 None:intergenic 30.0%
!! AAAGAGTTTCATTTTCTGGT+AGG - chr8_2:21126689-21126708 None:intergenic 30.0%
! GAGAAAAGAGTTTCATTTTC+TGG - chr8_2:21126693-21126712 None:intergenic 30.0%
! GGTTATTATTAAGGTGCTAA+AGG - chr8_2:21126864-21126883 None:intergenic 30.0%
! GGAATGTTATTGCTGTTAAT+CGG + chr8_2:21126917-21126936 Msa1239410:intron 30.0%
! ATCTTACTTGCTAACTTACT+GGG + chr8_2:21127035-21127054 Msa1239410:intron 30.0%
ACTATATTGACAGTAACCAA+AGG - chr8_2:21127150-21127169 None:intergenic 30.0%
GATTGCAACTTACAAAAGAT+AGG - chr8_2:21127249-21127268 None:intergenic 30.0%
TGCAATCAAGTAACAAAGAT+AGG - chr8_2:21127308-21127327 None:intergenic 30.0%
! CTATGTAACTTTGTTGTGTT+TGG + chr8_2:21127531-21127550 Msa1239410:three_prime_UTR 30.0%
!! TCATTTTAGTGATGACCAAT+TGG - chr8_2:21127686-21127705 None:intergenic 30.0%
! AGTGCCTATTTTCATTATGA+TGG + chr8_2:21127784-21127803 Msa1239410:three_prime_UTR 30.0%
GAGACCATCATAATGAAAAT+AGG - chr8_2:21127791-21127810 None:intergenic 30.0%
TTCACGTGAACAAAAATACA+GGG - chr8_2:21127816-21127835 None:intergenic 30.0%
TTCCTATCTTAGTGAACACA+CGG - chr8_2:21123506-21123525 None:intergenic 35.0%
AGTTGTGTGTTGAGTTTAAG+TGG + chr8_2:21123765-21123784 Msa1239410:intron 35.0%
! GTTTTCATAAGCTATCTTGG+AGG + chr8_2:21123945-21123964 Msa1239410:intron 35.0%
TCGGTAAATAAGCTCAAGTA+AGG + chr8_2:21124054-21124073 Msa1239410:intron 35.0%
ACAATCCCAAATATGCTCTA+AGG - chr8_2:21124093-21124112 None:intergenic 35.0%
!! GAGCATATTTGGGATTGTTT+TGG + chr8_2:21124095-21124114 Msa1239410:intron 35.0%
ATTATAGAGAGGCTTATGAC+AGG + chr8_2:21124121-21124140 Msa1239410:intron 35.0%
TCAAATAAGCCAATCGAAAC+AGG + chr8_2:21124324-21124343 Msa1239410:intron 35.0%
AGCTCACTTTGTAATTCCAT+TGG + chr8_2:21124548-21124567 Msa1239410:intron 35.0%
AAAACTCGAACATCATTCCA+TGG - chr8_2:21125509-21125528 None:intergenic 35.0%
AAACTCAGAACATCATTCCA+TGG - chr8_2:21125729-21125748 None:intergenic 35.0%
! TTTTGAGCCTTCGAAAACAA+AGG + chr8_2:21125746-21125765 Msa1239410:intron 35.0%
!!! TTGAAACGGCCATTTTTATC+AGG - chr8_2:21126019-21126038 None:intergenic 35.0%
CAAAAAATTGCACACAGAAG+CGG - chr8_2:21126352-21126371 None:intergenic 35.0%
! GGAAAAAGACTAGTTAAGTG+TGG - chr8_2:21126462-21126481 None:intergenic 35.0%
!!! TTAACTAGTCTTTTTCCCAG+TGG + chr8_2:21126465-21126484 Msa1239410:intron 35.0%
ACTGTAATCGAGTATCATTC+TGG + chr8_2:21126825-21126844 Msa1239410:intron 35.0%
! AAAGTGGATCCCTCATTTTA+GGG - chr8_2:21126885-21126904 None:intergenic 35.0%
! TAAAGTGGATCCCTCATTTT+AGG - chr8_2:21126886-21126905 None:intergenic 35.0%
CAGTAAGTTAGCAAGTAAGA+TGG - chr8_2:21127036-21127055 None:intergenic 35.0%
! CATCTTACTTGCTAACTTAC+TGG + chr8_2:21127034-21127053 Msa1239410:intron 35.0%
!! TTTCAATGCTTTGAGGTAAG+GGG - chr8_2:21127116-21127135 None:intergenic 35.0%
!! GTTTCAATGCTTTGAGGTAA+GGG - chr8_2:21127117-21127136 None:intergenic 35.0%
GTTACTTGATTGCACTATGA+AGG + chr8_2:21127314-21127333 Msa1239410:intron 35.0%
AAGACATTGTCTTATGGAAC+TGG + chr8_2:21127342-21127361 Msa1239410:CDS 35.0%
CTTTACCTCAAAACCAAGAT+CGG - chr8_2:21127394-21127413 None:intergenic 35.0%
!! TTGTTTTTCAATGCGCAGAT+TGG + chr8_2:21127465-21127484 Msa1239410:intron 35.0%
! GATGATGGTCTTCAAACATT+TGG + chr8_2:21127568-21127587 Msa1239410:three_prime_UTR 35.0%
CTTCACGTGAACAAAAATAC+AGG - chr8_2:21127817-21127836 None:intergenic 35.0%
GATAGGAAGCCATCATTCAA+TGG + chr8_2:21123518-21123537 Msa1239410:CDS 40.0%
CACGGACACATGATTCTAAT+TGG - chr8_2:21123691-21123710 None:intergenic 40.0%
AGCCTAACAATATCGTGACA+CGG - chr8_2:21123709-21123728 None:intergenic 40.0%
AAACTCAACACACAACTACG+AGG - chr8_2:21123762-21123781 None:intergenic 40.0%
!!! CTGTTTTTTCTTTTGGTCGG+TGG - chr8_2:21123806-21123825 None:intergenic 40.0%
CAGGTCCTTAGAGCATATTT+GGG + chr8_2:21124085-21124104 Msa1239410:intron 40.0%
CAGGACCTTAGAGCATATTT+CGG + chr8_2:21124140-21124159 Msa1239410:intron 40.0%
ACAGTCCGAAATATGCTCTA+AGG - chr8_2:21124148-21124167 None:intergenic 40.0%
! GAGCATATTTCGGACTGTTT+TGG + chr8_2:21124150-21124169 Msa1239410:intron 40.0%
! ACACTTCTGAGAGACTGTTT+GGG - chr8_2:21124286-21124305 None:intergenic 40.0%
! AACACTTCTGAGAGACTGTT+TGG - chr8_2:21124287-21124306 None:intergenic 40.0%
!! CTCTCAGAAGTGTTAATGTC+AGG + chr8_2:21124293-21124312 Msa1239410:intron 40.0%
!! TCAGAAGTGTTAATGTCAGG+AGG + chr8_2:21124296-21124315 Msa1239410:intron 40.0%
ATGTATCTTAAGCGCTTTCC+TGG + chr8_2:21124857-21124876 Msa1239410:intron 40.0%
AGCTTCTGTCGCAATATTAG+GGG - chr8_2:21124889-21124908 None:intergenic 40.0%
GAGCTTCTGTCGCAATATTA+GGG - chr8_2:21124890-21124909 None:intergenic 40.0%
TGAGCTTCTGTCGCAATATT+AGG - chr8_2:21124891-21124910 None:intergenic 40.0%
GACCTGACAGAAGTTGTTTA+AGG + chr8_2:21125390-21125409 Msa1239410:intron 40.0%
AGCCTTAAACAACTTCTGTC+AGG - chr8_2:21125395-21125414 None:intergenic 40.0%
AGGTAAATCTTCTCTCTACG+TGG + chr8_2:21126047-21126066 Msa1239410:intron 40.0%
ATGGCAGTAACAAGAGTGAT+AGG - chr8_2:21126079-21126098 None:intergenic 40.0%
! TTGGTAATCTGCGCATTACT+AGG + chr8_2:21126260-21126279 Msa1239410:intron 40.0%
TGGTAATCTGCGCATTACTA+GGG + chr8_2:21126261-21126280 Msa1239410:intron 40.0%
ACTTGTGTTTGTGGGATTAC+TGG - chr8_2:21126599-21126618 None:intergenic 40.0%
GCTAAGTGAAATGCACTCAT+TGG + chr8_2:21126801-21126820 Msa1239410:intron 40.0%
AAATGAGGGATCCACTTTAG+AGG + chr8_2:21126887-21126906 Msa1239410:intron 40.0%
AATGAGGGATCCACTTTAGA+GGG + chr8_2:21126888-21126907 Msa1239410:intron 40.0%
! ATCCACTTTAGAGGGAAAAC+AGG + chr8_2:21126896-21126915 Msa1239410:intron 40.0%
!! TTCCTGTTTTCCCTCTAAAG+TGG - chr8_2:21126901-21126920 None:intergenic 40.0%
!! GGTTTCAATGCTTTGAGGTA+AGG - chr8_2:21127118-21127137 None:intergenic 40.0%
TGTAGGGTTTCAATGCTTTG+AGG - chr8_2:21127123-21127142 None:intergenic 40.0%
AGTAACCAAAGGTTGCTGTA+GGG - chr8_2:21127139-21127158 None:intergenic 40.0%
ACTTGATTGCACTATGAAGG+TGG + chr8_2:21127317-21127336 Msa1239410:intron 40.0%
CTTGATTGCACTATGAAGGT+GGG + chr8_2:21127318-21127337 Msa1239410:intron 40.0%
GGAACTGGAAGATTAGATGA+TGG + chr8_2:21127357-21127376 Msa1239410:CDS 40.0%
! TGGAAGATTAGATGATGGCA+AGG + chr8_2:21127362-21127381 Msa1239410:CDS 40.0%
!!! TTTAGCCGATCTTGGTTTTG+AGG + chr8_2:21127386-21127405 Msa1239410:CDS 40.0%
! GATTGGTGATTACTTGGATG+TGG + chr8_2:21127482-21127501 Msa1239410:intron 40.0%
TTTGAAGACCATCATCACAC+AGG - chr8_2:21127564-21127583 None:intergenic 40.0%
! GAGCAGATCTCTAGTTTCTA+TGG + chr8_2:21127713-21127732 Msa1239410:three_prime_UTR 40.0%
! TCTCTAGTTTCTATGGCTAC+TGG + chr8_2:21127720-21127739 Msa1239410:three_prime_UTR 40.0%
AGTCTCGAAGAAATGAGCGA+CGG + chr8_2:21123280-21123299 Msa1239410:exon 45.0%
! AGTACCTTTTCGCGATCAAC+TGG - chr8_2:21123388-21123407 None:intergenic 45.0%
CTATCTTAGTGAACACACGG+AGG - chr8_2:21123503-21123522 None:intergenic 45.0%
CTCCGTGTGTTCACTAAGAT+AGG + chr8_2:21123501-21123520 Msa1239410:CDS 45.0%
GTCCGTGTCACGATATTGTT+AGG + chr8_2:21123704-21123723 Msa1239410:intron 45.0%
GTGTCACGATATTGTTAGGC+TGG + chr8_2:21123708-21123727 Msa1239410:intron 45.0%
AACACACAACTACGAGGTTC+TGG - chr8_2:21123756-21123775 None:intergenic 45.0%
CTCAAGTAAGGCAATACAGC+AGG + chr8_2:21124066-21124085 Msa1239410:intron 45.0%
GCAGGTCCTTAGAGCATATT+TGG + chr8_2:21124084-21124103 Msa1239410:intron 45.0%
ACAGGTGCTTGGAGCATATT+TGG + chr8_2:21124342-21124361 Msa1239410:intron 45.0%
CAGGTGCTTGGAGCATATTT+GGG + chr8_2:21124343-21124362 Msa1239410:intron 45.0%
TCTGTCGCAATATTAGGGGA+GGG - chr8_2:21124885-21124904 None:intergenic 45.0%
TTCTGTCGCAATATTAGGGG+AGG - chr8_2:21124886-21124905 None:intergenic 45.0%
TGGCCGTTTCAAAGTTCAAG+AGG + chr8_2:21126027-21126046 Msa1239410:CDS 45.0%
CAGTAACAAGAGTGATAGGC+AGG - chr8_2:21126075-21126094 None:intergenic 45.0%
CCAACTTGGCATGTCATTAG+TGG - chr8_2:21126213-21126232 None:intergenic 45.0%
CCACTAATGACATGCCAAGT+TGG + chr8_2:21126210-21126229 Msa1239410:intron 45.0%
ATGCTCTGTTCTGTTCCACT+GGG - chr8_2:21126483-21126502 None:intergenic 45.0%
!! AATGCTTTGAGGTAAGGGGT+GGG - chr8_2:21127112-21127131 None:intergenic 45.0%
TGAAACCCTACAGCAACCTT+TGG + chr8_2:21127131-21127150 Msa1239410:intron 45.0%
CAGTAACCAAAGGTTGCTGT+AGG - chr8_2:21127140-21127159 None:intergenic 45.0%
GTGGGCAAGACATTGTCTTA+TGG + chr8_2:21127336-21127355 Msa1239410:CDS 45.0%
! TGCGCAGATTGGTGATTACT+TGG + chr8_2:21127476-21127495 Msa1239410:intron 45.0%
CGAACCAGTTGATCGCGAAA+AGG + chr8_2:21123381-21123400 Msa1239410:CDS 50.0%
!! GAGGTTCTGGATTCGAACAC+GGG - chr8_2:21123743-21123762 None:intergenic 50.0%
!! CGAGGTTCTGGATTCGAACA+CGG - chr8_2:21123744-21123763 None:intergenic 50.0%
! CTTTTGGTCGGTGGACAAAG+TGG - chr8_2:21123797-21123816 None:intergenic 50.0%
AGCCAATCGAAACAGGTGCT+TGG + chr8_2:21124331-21124350 Msa1239410:intron 50.0%
CTCCAAGCACCTGTTTCGAT+TGG - chr8_2:21124336-21124355 None:intergenic 50.0%
! CTAGGAGAAAAGGGCACATG+TGG - chr8_2:21124611-21124630 None:intergenic 50.0%
CTGTCGCAATATTAGGGGAG+GGG - chr8_2:21124884-21124903 None:intergenic 50.0%
GCGTTTCTTCTTCTTGCAGC+AGG - chr8_2:21125971-21125990 None:intergenic 50.0%
CATGCTCTGTTCTGTTCCAC+TGG - chr8_2:21126484-21126503 None:intergenic 50.0%
!! ATGCTTTGAGGTAAGGGGTG+GGG - chr8_2:21127111-21127130 None:intergenic 50.0%
!! CAATGCTTTGAGGTAAGGGG+TGG - chr8_2:21127113-21127132 None:intergenic 50.0%
CTCGAAGAAATGAGCGACGG+AGG + chr8_2:21123283-21123302 Msa1239410:exon 55.0%
GACGGAGGACCAAAACGACA+AGG + chr8_2:21123298-21123317 Msa1239410:CDS 55.0%
GGAGGACCAAAACGACAAGG+CGG + chr8_2:21123301-21123320 Msa1239410:CDS 55.0%
!! CCTCTTGGTGGTGGAGGTAA+TGG - chr8_2:21123331-21123350 None:intergenic 55.0%
CCATTACCTCCACCACCAAG+AGG + chr8_2:21123328-21123347 Msa1239410:CDS 55.0%
!! AACTGGTTCGAGACGAGGAC+GGG - chr8_2:21123371-21123390 None:intergenic 55.0%
!! CAACTGGTTCGAGACGAGGA+CGG - chr8_2:21123372-21123391 None:intergenic 55.0%
!! CGATCAACTGGTTCGAGACG+AGG - chr8_2:21123376-21123395 None:intergenic 55.0%
TGAACACACGGAGGAGCAAG+GGG - chr8_2:21123494-21123513 None:intergenic 55.0%
GTGAACACACGGAGGAGCAA+GGG - chr8_2:21123495-21123514 None:intergenic 55.0%
AGTGAACACACGGAGGAGCA+AGG - chr8_2:21123496-21123515 None:intergenic 55.0%
CTGGATTCGAACACGGGTCA+AGG - chr8_2:21123737-21123756 None:intergenic 55.0%
CAATATTAGGGGAGGGGTCC+AGG - chr8_2:21124878-21124897 None:intergenic 55.0%
CTGCGCATTACTAGGGAGTG+TGG + chr8_2:21126268-21126287 Msa1239410:intron 55.0%
! GGCAAGGCTTTAGCCGATCT+TGG + chr8_2:21127378-21127397 Msa1239410:CDS 55.0%
! GTGCTGCTCCTGTGTGATGA+TGG + chr8_2:21127553-21127572 Msa1239410:three_prime_UTR 55.0%
!! GGTCTGCCGCCTTGTCGTTT+TGG - chr8_2:21123310-21123329 None:intergenic 60.0%
ATGCAGTCGCGACACGGTTG+TGG - chr8_2:21126326-21126345 None:intergenic 60.0%
CGGCTAATGCAGTCGCGACA+CGG - chr8_2:21126332-21126351 None:intergenic 60.0%
GATGGAGGAGGCGGACCTCT+TGG - chr8_2:21123346-21123365 None:intergenic 65.0%
AGACGAGGACGGGAGGATGG+AGG - chr8_2:21123361-21123380 None:intergenic 65.0%
TCGAGACGAGGACGGGAGGA+TGG - chr8_2:21123364-21123383 None:intergenic 65.0%
TGGTTCGAGACGAGGACGGG+AGG - chr8_2:21123368-21123387 None:intergenic 65.0%
GGAGGAGCAAGGGGCAAGTC+TGG - chr8_2:21123485-21123504 None:intergenic 65.0%
CGCGACACGGTTGTGGAGAG+TGG - chr8_2:21126319-21126338 None:intergenic 65.0%
!! GGCGGACCTCTTGGTGGTGG+AGG - chr8_2:21123337-21123356 None:intergenic 70.0%
GGAGGCGGACCTCTTGGTGG+TGG - chr8_2:21123340-21123359 None:intergenic 70.0%
GGAGGAGGCGGACCTCTTGG+TGG - chr8_2:21123343-21123362 None:intergenic 70.0%
GGACGGGAGGATGGAGGAGG+CGG - chr8_2:21123355-21123374 None:intergenic 70.0%
CGAGGACGGGAGGATGGAGG+AGG - chr8_2:21123358-21123377 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 21123194 21127858 21123194 ID=Msa1239410;Name=Msa1239410
chr8_2 mRNA 21123194 21127858 21123194 ID=Msa1239410-mRNA-1;Parent=Msa1239410;Name=Msa1239410-mRNA-1;_AED=0.05;_eAED=0.05;_QI=98|1|1|1|1|1|5|343|151
chr8_2 exon 21123194 21123402 21123194 ID=Msa1239410-mRNA-1:exon:7597;Parent=Msa1239410-mRNA-1
chr8_2 exon 21123486 21123629 21123486 ID=Msa1239410-mRNA-1:exon:7598;Parent=Msa1239410-mRNA-1
chr8_2 exon 21125953 21126048 21125953 ID=Msa1239410-mRNA-1:exon:7599;Parent=Msa1239410-mRNA-1
chr8_2 exon 21127336 21127407 21127336 ID=Msa1239410-mRNA-1:exon:7600;Parent=Msa1239410-mRNA-1
chr8_2 exon 21127483 21127858 21127483 ID=Msa1239410-mRNA-1:exon:7601;Parent=Msa1239410-mRNA-1
chr8_2 five_prime_UTR 21123194 21123291 21123194 ID=Msa1239410-mRNA-1:five_prime_utr;Parent=Msa1239410-mRNA-1
chr8_2 CDS 21123292 21123402 21123292 ID=Msa1239410-mRNA-1:cds;Parent=Msa1239410-mRNA-1
chr8_2 CDS 21123486 21123629 21123486 ID=Msa1239410-mRNA-1:cds;Parent=Msa1239410-mRNA-1
chr8_2 CDS 21125953 21126048 21125953 ID=Msa1239410-mRNA-1:cds;Parent=Msa1239410-mRNA-1
chr8_2 CDS 21127336 21127407 21127336 ID=Msa1239410-mRNA-1:cds;Parent=Msa1239410-mRNA-1
chr8_2 CDS 21127483 21127515 21127483 ID=Msa1239410-mRNA-1:cds;Parent=Msa1239410-mRNA-1
chr8_2 three_prime_UTR 21127516 21127858 21127516 ID=Msa1239410-mRNA-1:three_prime_utr;Parent=Msa1239410-mRNA-1
Gene Sequence

>Msa1239410

ATGAGCGACGGAGGACCAAAACGACAAGGCGGCAGACCATTACCTCCACCACCAAGAGGTCCGCCTCCTCCATCCTCCCGTCCTCGTCTCGAACCAGTTGATCGCGAAAAGACTTGCCCCTTGCTCCTCCGTGTGTTCACTAAGATAGGAAGCCATCATTCAATGGATGATTTTTCAGTTAGAGGGAAAGAACCGAAAGATGAAGTTCAGATTTATACATGGAAAGATGCTACTCTCAGAGAATTAACCGATCTTGTCAAAGAAGTGGCTCCTGCTGCAAGAAGAAGAAACGCAAAGCTATCTTTTGCTTTTGTGTTTCCTGATAAAAATGGCCGTTTCAAAGTTCAAGAGGTGGGCAAGACATTGTCTTATGGAACTGGAAGATTAGATGATGGCAAGGCTTTAGCCGATCTTGGTTTTGAGATTGGTGATTACTTGGATGTGGCTATTCTGTAG

Protein sequence

>Msa1239410

MSDGGPKRQGGRPLPPPPRGPPPPSSRPRLEPVDREKTCPLLLRVFTKIGSHHSMDDFSVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRNAKLSFAFVFPDKNGRFKVQEVGKTLSYGTGRLDDGKALADLGFEIGDYLDVAIL*