Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1263020 | XP_021688953.1 | 46.377 | 138 | 41 | 2 | 8 | 112 | 1 | 138 | 2.23e-32 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1263020 | sp|Q9ZR37|DUS1_ARATH | 71.429 | 49 | 14 | 0 | 62 | 110 | 142 | 190 | 3.71e-18 | 80.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033980 | Msa1263020 | 0.817385 | 3.389503e-52 | -8.615850e-47 |
| Msa0040450 | Msa1263020 | 0.819338 | 1.224146e-52 | -8.615850e-47 |
| Msa0054440 | Msa1263020 | 0.800289 | 1.545380e-48 | -8.615850e-47 |
| Msa0081930 | Msa1263020 | 0.823230 | 1.549407e-53 | -8.615850e-47 |
| Msa0109590 | Msa1263020 | 0.806430 | 8.256466e-50 | -8.615850e-47 |
| Msa0603670 | Msa1263020 | 0.811690 | 6.171633e-51 | -8.615850e-47 |
| Msa0610130 | Msa1263020 | 0.800719 | 1.263298e-48 | -8.615850e-47 |
| Msa0620620 | Msa1263020 | 0.810598 | 1.064634e-50 | -8.615850e-47 |
| Msa0623080 | Msa1263020 | 0.818418 | 1.980839e-52 | -8.615850e-47 |
| Msa0750430 | Msa1263020 | 0.807150 | 5.816483e-50 | -8.615850e-47 |
| Msa0826760 | Msa1263020 | 0.813730 | 2.207144e-51 | -8.615850e-47 |
| Msa0128020 | Msa1263020 | 0.800599 | 1.336093e-48 | -8.615850e-47 |
| Msa0152140 | Msa1263020 | 0.803840 | 2.876630e-49 | -8.615850e-47 |
| Msa0173990 | Msa1263020 | 0.818649 | 1.755585e-52 | -8.615850e-47 |
| Msa0197660 | Msa1263020 | 0.822077 | 2.872776e-53 | -8.615850e-47 |
| Msa0212310 | Msa1263020 | 0.804960 | 1.680596e-49 | -8.615850e-47 |
| Msa1263020 | Msa1314100 | 0.808631 | 2.816197e-50 | -8.615850e-47 |
| Msa1263020 | Msa1358670 | 0.805967 | 1.033651e-49 | -8.615850e-47 |
| Msa1263020 | Msa1415640 | 0.813824 | 2.104709e-51 | -8.615850e-47 |
| Msa1263020 | Msa1424750 | 0.818640 | 1.763797e-52 | -8.615850e-47 |
| Msa0432770 | Msa1263020 | 0.824923 | 6.205171e-54 | -8.615850e-47 |
| Msa0480000 | Msa1263020 | 0.815671 | 8.204799e-52 | -8.615850e-47 |
| Msa1064250 | Msa1263020 | 0.817161 | 3.807035e-52 | -8.615850e-47 |
| Msa1080800 | Msa1263020 | 0.812893 | 3.370730e-51 | -8.615850e-47 |
| Msa0239800 | Msa1263020 | 0.833748 | 4.461447e-56 | -8.615850e-47 |
| Msa0257500 | Msa1263020 | 0.809199 | 2.128828e-50 | -8.615850e-47 |
| Msa0277820 | Msa1263020 | 0.806518 | 7.911704e-50 | -8.615850e-47 |
| Msa0306710 | Msa1263020 | 0.805627 | 1.218377e-49 | -8.615850e-47 |
| Msa0317510 | Msa1263020 | 0.833308 | 5.747774e-56 | -8.615850e-47 |
| Msa1118940 | Msa1263020 | 0.801772 | 7.690294e-49 | -8.615850e-47 |
| Msa1204630 | Msa1263020 | 0.800721 | 1.261904e-48 | -8.615850e-47 |
| Msa0584860 | Msa1263020 | 0.816217 | 6.196857e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1263020 | MtrunA17_Chr4g0065631 | 76.000 | 75 | 15 | 1 | 1 | 75 | 1 | 72 | 3.43e-32 | 112 |
| Msa1263020 | MtrunA17_Chr4g0065631 | 92.727 | 55 | 4 | 0 | 62 | 116 | 129 | 183 | 1.90e-30 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1263020 | AT3G23610.2 | 66.667 | 54 | 18 | 0 | 62 | 115 | 142 | 195 | 1.46e-19 | 81.3 |
| Msa1263020 | AT3G23610.1 | 71.429 | 49 | 14 | 0 | 62 | 110 | 142 | 190 | 3.77e-19 | 80.1 |
| Msa1263020 | AT3G23610.5 | 71.429 | 49 | 14 | 0 | 62 | 110 | 142 | 190 | 3.97e-19 | 80.1 |
| Msa1263020 | AT3G23610.4 | 71.429 | 49 | 14 | 0 | 62 | 110 | 142 | 190 | 4.29e-19 | 80.1 |
| Msa1263020 | AT3G23610.3 | 71.429 | 49 | 14 | 0 | 62 | 110 | 142 | 190 | 5.94e-19 | 80.1 |
| Msa1263020 | AT3G06110.1 | 63.265 | 49 | 18 | 0 | 62 | 110 | 106 | 154 | 2.04e-15 | 69.3 |
| Msa1263020 | AT3G06110.2 | 63.265 | 49 | 18 | 0 | 62 | 110 | 116 | 164 | 2.45e-15 | 69.3 |
| Msa1263020 | AT3G06110.3 | 63.265 | 49 | 18 | 0 | 62 | 110 | 116 | 164 | 2.45e-15 | 69.3 |
Find 39 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGTTAGGGTTTGTTTC+TGG | 0.047091 | 8_2:+66057955 | Msa1263020:intron |
| TTATTGAATTCGTATGAATT+AGG | 0.234433 | 8_2:+66057732 | Msa1263020:five_prime_UTR |
| AGTAAACTACCTGGTCAATT+TGG | 0.246911 | 8_2:-66057873 | None:intergenic |
| TTTGGTTAGGGTTTGTTTCT+GGG | 0.275943 | 8_2:+66057956 | Msa1263020:intron |
| AAATAAAATCATTCTTATTC+CGG | 0.302899 | 8_2:-66061118 | None:intergenic |
| TGATCGAGATAATCAAATTC+TGG | 0.348778 | 8_2:-66057684 | None:intergenic |
| AATATGTAGAGTTCAAAGTT+AGG | 0.358159 | 8_2:+66059496 | Msa1263020:intron |
| CCAACTTCCTTTGAAGAAGA+TGG | 0.360582 | 8_2:+66061034 | Msa1263020:CDS |
| TGTGAAGACATCGAAGTGTC+TGG | 0.378386 | 8_2:+66060669 | Msa1263020:intron |
| AGGAATATTATCCTCTTTCA+AGG | 0.387832 | 8_2:-66057848 | None:intergenic |
| AATTCGTATGAATTAGGAAA+TGG | 0.402626 | 8_2:+66057738 | Msa1263020:exon |
| CCATCTTCTTCAAAGGAAGT+TGG | 0.421879 | 8_2:-66061034 | None:intergenic |
| TGACTAATGAAACCGCGATT+TGG | 0.423573 | 8_2:-66059828 | None:intergenic |
| TTTGAATAAATCCTTGAAAG+AGG | 0.426736 | 8_2:+66057837 | Msa1263020:CDS |
| GGTTTGTTTCTGGGTTCTGT+TGG | 0.436373 | 8_2:+66057965 | Msa1263020:CDS |
| AATTCCATCCATGGAGTCAT+AGG | 0.439906 | 8_2:+66061176 | Msa1263020:three_prime_UTR |
| CCGGCGTAAATAACTTATCA+AGG | 0.458031 | 8_2:-66061099 | None:intergenic |
| ATATGTAGAGTTCAAAGTTA+GGG | 0.465593 | 8_2:+66059497 | Msa1263020:intron |
| GACTTTGAGAAATCTCTTCA+AGG | 0.481571 | 8_2:+66059858 | Msa1263020:CDS |
| TCGCGGTTTCATTAGTCAGC+TGG | 0.481709 | 8_2:+66059833 | Msa1263020:CDS |
| CAACTTCCTTTGAAGAAGAT+GGG | 0.493093 | 8_2:+66061035 | Msa1263020:CDS |
| GGCATATCTGATGAAGTCTC+GGG | 0.503579 | 8_2:+66059749 | Msa1263020:CDS |
| TGAACTGATAATCAACGAAA+AGG | 0.503651 | 8_2:-66057644 | None:intergenic |
| CCTTCTCCCATCTTCTTCAA+AGG | 0.517870 | 8_2:-66061041 | None:intergenic |
| TGGCATATCTGATGAAGTCT+CGG | 0.525117 | 8_2:+66059748 | Msa1263020:CDS |
| TGTTGGTTCTGCTACGAACA+AGG | 0.539637 | 8_2:+66057982 | Msa1263020:CDS |
| AACGTGGTTAATTCCATCCA+TGG | 0.540181 | 8_2:+66061167 | Msa1263020:three_prime_UTR |
| GTGAAGACATCGAAGTGTCT+GGG | 0.563144 | 8_2:+66060670 | Msa1263020:intron |
| TGCACCTATGACTCCATGGA+TGG | 0.570427 | 8_2:-66061180 | None:intergenic |
| TATTCCTTGCCAAATTGACC+AGG | 0.585093 | 8_2:+66057864 | Msa1263020:CDS |
| AATTTGCACCTATGACTCCA+TGG | 0.592048 | 8_2:-66061184 | None:intergenic |
| CCTTTGAAGAAGATGGGAGA+AGG | 0.594462 | 8_2:+66061041 | Msa1263020:CDS |
| CGGCGTAAATAACTTATCAA+GGG | 0.599107 | 8_2:-66061098 | None:intergenic |
| CCTTGATAAGTTATTTACGC+CGG | 0.607125 | 8_2:+66061099 | Msa1263020:CDS |
| TTTCAGTGTGACTATCATTG+TGG | 0.623226 | 8_2:+66059728 | Msa1263020:intron |
| ACTACCTGGTCAATTTGGCA+AGG | 0.624601 | 8_2:-66057868 | None:intergenic |
| CCACAAGCAGCTCCAAATCG+CGG | 0.677460 | 8_2:+66059816 | Msa1263020:CDS |
| GCATATCTGATGAAGTCTCG+GGG | 0.693604 | 8_2:+66059750 | Msa1263020:CDS |
| AAAGTGGACTAGTCATAACG+TGG | 0.742351 | 8_2:+66061151 | Msa1263020:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTGTCTTAAGTTTTTT+AGG | + | chr8_2:66058983-66059002 | Msa1263020:intron | 15.0% |
| !!! | ATCATATCTGTAATTTTAAA+GGG | - | chr8_2:66059257-66059276 | None:intergenic | 15.0% |
| !!! | AATCATATCTGTAATTTTAA+AGG | - | chr8_2:66059258-66059277 | None:intergenic | 15.0% |
| !! | ATATATATATTGGTATGTTA+AGG | - | chr8_2:66059915-66059934 | None:intergenic | 15.0% |
| !!! | CATCTTGAATATATTTTAAA+TGG | + | chr8_2:66059955-66059974 | Msa1263020:intron | 15.0% |
| !!! | AAATCATAAATGTATTTTGA+TGG | - | chr8_2:66060001-66060020 | None:intergenic | 15.0% |
| !!! | AATATCTAAATTTTAATGCA+TGG | + | chr8_2:66060381-66060400 | Msa1263020:intron | 15.0% |
| !! | AAATAAAATCATTCTTATTC+CGG | - | chr8_2:66061121-66061140 | None:intergenic | 15.0% |
| !!! | AAGAATGATTTTATTTTTTC+TGG | + | chr8_2:66061125-66061144 | Msa1263020:exon | 15.0% |
| !! | TTATTGAATTCGTATGAATT+AGG | + | chr8_2:66057732-66057751 | Msa1263020:five_prime_UTR | 20.0% |
| !!! | ACAAATTGCATTAATTTTGA+AGG | + | chr8_2:66057807-66057826 | Msa1263020:CDS | 20.0% |
| !! | AAATAACGATGAATGTTATT+TGG | + | chr8_2:66057938-66057957 | Msa1263020:intron | 20.0% |
| !! | TATAACTTTATAGACGAAAT+CGG | - | chr8_2:66058077-66058096 | None:intergenic | 20.0% |
| !!! | GGAAATTGATAATATCAATA+AGG | - | chr8_2:66058356-66058375 | None:intergenic | 20.0% |
| !! | ATTATCAATTTCCATGTTTA+TGG | + | chr8_2:66058363-66058382 | Msa1263020:intron | 20.0% |
| !! | TAAAGAAATAACGTTAAAGT+AGG | + | chr8_2:66058426-66058445 | Msa1263020:intron | 20.0% |
| !! | AAAGAAATAACGTTAAAGTA+GGG | + | chr8_2:66058427-66058446 | Msa1263020:intron | 20.0% |
| !!! | AGTAGTAAATTGTATTTTGT+AGG | + | chr8_2:66058804-66058823 | Msa1263020:intron | 20.0% |
| !! | ATAGTAACAATAATGTTTAG+TGG | - | chr8_2:66060159-66060178 | None:intergenic | 20.0% |
| !! | AACAAATTAGATACAATCAA+TGG | - | chr8_2:66060647-66060666 | None:intergenic | 20.0% |
| !! | ATTCATAGTTGTTATAAACT+GGG | - | chr8_2:66060820-66060839 | None:intergenic | 20.0% |
| !! | AATTCATAGTTGTTATAAAC+TGG | - | chr8_2:66060821-66060840 | None:intergenic | 20.0% |
| !!! | TTATTTTTTCTGGAAAAAAG+TGG | + | chr8_2:66061135-66061154 | Msa1263020:three_prime_UTR | 20.0% |
| ! | AATTCGTATGAATTAGGAAA+TGG | + | chr8_2:66057738-66057757 | Msa1263020:exon | 25.0% |
| ! | TTTGAATAAATCCTTGAAAG+AGG | + | chr8_2:66057837-66057856 | Msa1263020:CDS | 25.0% |
| ! | TTCGTCTATAAAGTTATAGA+TGG | + | chr8_2:66058079-66058098 | Msa1263020:intron | 25.0% |
| ! | TTTACACTAGTAAATGGATA+GGG | + | chr8_2:66058163-66058182 | Msa1263020:intron | 25.0% |
| ! | ACTCAAATAATCCATAAACA+TGG | - | chr8_2:66058377-66058396 | None:intergenic | 25.0% |
| ! | TGCACATTGTATTTAATGTA+AGG | + | chr8_2:66058397-66058416 | Msa1263020:intron | 25.0% |
| !!! | AAGTTTTATTTTGGTGACAA+TGG | + | chr8_2:66058523-66058542 | Msa1263020:intron | 25.0% |
| !! | TGATCTTTAAAAGTTTAGCA+TGG | + | chr8_2:66058614-66058633 | Msa1263020:intron | 25.0% |
| !! | GATCTTTAAAAGTTTAGCAT+GGG | + | chr8_2:66058615-66058634 | Msa1263020:intron | 25.0% |
| ! | TACTACTCGTATAAGATATA+TGG | - | chr8_2:66058791-66058810 | None:intergenic | 25.0% |
| ! | ACATCTATTATAAAGCTATC+TGG | - | chr8_2:66058831-66058850 | None:intergenic | 25.0% |
| !! | ACAAAAGTGTAACTTTAGTA+TGG | - | chr8_2:66059019-66059038 | None:intergenic | 25.0% |
| !! | TACTAAAGTTACACTTTTGT+TGG | + | chr8_2:66059019-66059038 | Msa1263020:intron | 25.0% |
| !!! | TTTGAAGTGTTGTTTTAAGT+TGG | - | chr8_2:66059076-66059095 | None:intergenic | 25.0% |
| !!! | CAATTATAAAAGCATCAACA+AGG | - | chr8_2:66059206-66059225 | None:intergenic | 25.0% |
| ! | AAACGCTTTATAGTATGAAT+TGG | + | chr8_2:66059420-66059439 | Msa1263020:intron | 25.0% |
| ! | AATATGTAGAGTTCAAAGTT+AGG | + | chr8_2:66059496-66059515 | Msa1263020:intron | 25.0% |
| ! | ATATGTAGAGTTCAAAGTTA+GGG | + | chr8_2:66059497-66059516 | Msa1263020:intron | 25.0% |
| !! | ATTATCTCCTTGTTTACTTT+GGG | + | chr8_2:66059545-66059564 | Msa1263020:intron | 25.0% |
| !!! | TTTACTACCTCCTTTTTTAA+TGG | + | chr8_2:66059605-66059624 | Msa1263020:intron | 25.0% |
| ! | AATATGACCATTAAAAAAGG+AGG | - | chr8_2:66059615-66059634 | None:intergenic | 25.0% |
| !!! | TCCTTTTTTAATGGTCATAT+TGG | + | chr8_2:66059614-66059633 | Msa1263020:intron | 25.0% |
| ! | TCCAATATGACCATTAAAAA+AGG | - | chr8_2:66059618-66059637 | None:intergenic | 25.0% |
| !! | AAATTAGAACCAAGTTTTTC+TGG | - | chr8_2:66059699-66059718 | None:intergenic | 25.0% |
| !!! | TAAATGTATTTTGATGGCTA+TGG | - | chr8_2:66059995-66060014 | None:intergenic | 25.0% |
| ! | TTAATGCAATTCTGTCAAAA+TGG | + | chr8_2:66060422-66060441 | Msa1263020:intron | 25.0% |
| ! | AATTCAGCATTTCATGAAAT+AGG | - | chr8_2:66060861-66060880 | None:intergenic | 25.0% |
| ! | TCTATAGTGTTTAGGAAAAA+TGG | + | chr8_2:66060907-66060926 | Msa1263020:intron | 25.0% |
| !!! | ATTAACAACTTTTGTTTGAG+AGG | + | chr8_2:66060943-66060962 | Msa1263020:intron | 25.0% |
| TGAACTGATAATCAACGAAA+AGG | - | chr8_2:66057647-66057666 | None:intergenic | 30.0% | |
| TGATCGAGATAATCAAATTC+TGG | - | chr8_2:66057687-66057706 | None:intergenic | 30.0% | |
| AGGAATATTATCCTCTTTCA+AGG | - | chr8_2:66057851-66057870 | None:intergenic | 30.0% | |
| ! | ACGATGAATGTTATTTGGTT+AGG | + | chr8_2:66057943-66057962 | Msa1263020:intron | 30.0% |
| ! | CGATGAATGTTATTTGGTTA+GGG | + | chr8_2:66057944-66057963 | Msa1263020:intron | 30.0% |
| GTTTACACTAGTAAATGGAT+AGG | + | chr8_2:66058162-66058181 | Msa1263020:intron | 30.0% | |
| ! | TTTTTGCTTACATATGTGAC+CGG | - | chr8_2:66058214-66058233 | None:intergenic | 30.0% |
| CATTGAATGACTAATGTACA+TGG | + | chr8_2:66058249-66058268 | Msa1263020:intron | 30.0% | |
| !! | AGTTGTTCTAGAAGTTGATT+TGG | + | chr8_2:66058314-66058333 | Msa1263020:intron | 30.0% |
| ! | AGTTTTACAGAACACAGATT+AGG | + | chr8_2:66058484-66058503 | Msa1263020:intron | 30.0% |
| !!! | CGGGTATGTAAGTTTTATTT+TGG | + | chr8_2:66058514-66058533 | Msa1263020:intron | 30.0% |
| TTAAAGATCAAAGCACACAA+TGG | - | chr8_2:66058604-66058623 | None:intergenic | 30.0% | |
| AACTTTAATGACAAGCAACA+TGG | - | chr8_2:66058937-66058956 | None:intergenic | 30.0% | |
| ! | ACACTTTTGTTGGAAAATTG+AGG | + | chr8_2:66059029-66059048 | Msa1263020:intron | 30.0% |
| ! | GATTATCTCCTTGTTTACTT+TGG | + | chr8_2:66059544-66059563 | Msa1263020:intron | 30.0% |
| TTAGACTAACCAGAAAAACT+TGG | + | chr8_2:66059687-66059706 | Msa1263020:intron | 30.0% | |
| CATGGTAAAGGAAGTAAAAA+GGG | + | chr8_2:66060121-66060140 | Msa1263020:intron | 30.0% | |
| ATACTGCTGTTCTGTTTATA+TGG | + | chr8_2:66060512-66060531 | Msa1263020:intron | 30.0% | |
| ATTAGTGAAGAAAATGAAGG+GGG | - | chr8_2:66060542-66060561 | None:intergenic | 30.0% | |
| CATTAGTGAAGAAAATGAAG+GGG | - | chr8_2:66060543-66060562 | None:intergenic | 30.0% | |
| CCATTAGTGAAGAAAATGAA+GGG | - | chr8_2:66060544-66060563 | None:intergenic | 30.0% | |
| TCCATTAGTGAAGAAAATGA+AGG | - | chr8_2:66060545-66060564 | None:intergenic | 30.0% | |
| TATCGAGAACAAAAGAAATG+TGG | - | chr8_2:66060570-66060589 | None:intergenic | 30.0% | |
| ! | TCCATGTTTCTATAGTGTTT+AGG | + | chr8_2:66060899-66060918 | Msa1263020:intron | 30.0% |
| TCCTAAACACTATAGAAACA+TGG | - | chr8_2:66060903-66060922 | None:intergenic | 30.0% | |
| TTTAGGAAAAATGGTCTGTT+AGG | + | chr8_2:66060916-66060935 | Msa1263020:intron | 30.0% | |
| AGTAAACTACCTGGTCAATT+TGG | - | chr8_2:66057876-66057895 | None:intergenic | 35.0% | |
| GCATGATTAAGTAAACTACC+TGG | - | chr8_2:66057885-66057904 | None:intergenic | 35.0% | |
| ! | ATTTGGTTAGGGTTTGTTTC+TGG | + | chr8_2:66057955-66057974 | Msa1263020:intron | 35.0% |
| ! | TTTGGTTAGGGTTTGTTTCT+GGG | + | chr8_2:66057956-66057975 | Msa1263020:intron | 35.0% |
| !!! | TGTTACTCACATTTTGACTG+TGG | + | chr8_2:66058024-66058043 | Msa1263020:intron | 35.0% |
| GACAGGTTTACACTAGTAAA+TGG | + | chr8_2:66058157-66058176 | Msa1263020:intron | 35.0% | |
| ATGTGACCAGATGCAATATA+AGG | + | chr8_2:66058279-66058298 | Msa1263020:intron | 35.0% | |
| TAACGTTAAAGTAGGGCAAA+AGG | + | chr8_2:66058434-66058453 | Msa1263020:intron | 35.0% | |
| ATTGATGAAGCCAAAAGCAA+TGG | + | chr8_2:66059111-66059130 | Msa1263020:intron | 35.0% | |
| !!! | GTTTTGGTTCATTGTTATGC+TGG | + | chr8_2:66059141-66059160 | Msa1263020:intron | 35.0% |
| ! | CTTTTATAATTGAGTGCCCT+GGG | + | chr8_2:66059214-66059233 | Msa1263020:intron | 35.0% |
| ! | TTTTATAATTGAGTGCCCTG+GGG | + | chr8_2:66059215-66059234 | Msa1263020:intron | 35.0% |
| GAAGAATGCACTTCAATTGT+TGG | - | chr8_2:66059383-66059402 | None:intergenic | 35.0% | |
| ACAATGATAGTCACACTGAA+AGG | - | chr8_2:66059729-66059748 | None:intergenic | 35.0% | |
| TTTCAGTGTGACTATCATTG+TGG | + | chr8_2:66059728-66059747 | Msa1263020:intron | 35.0% | |
| ! | GACTTTGAGAAATCTCTTCA+AGG | + | chr8_2:66059858-66059877 | Msa1263020:CDS | 35.0% |
| GCATGGTAAAGGAAGTAAAA+AGG | + | chr8_2:66060120-66060139 | Msa1263020:intron | 35.0% | |
| !! | AGCTTCATGGGTTTTTCAAA+TGG | + | chr8_2:66060445-66060464 | Msa1263020:intron | 35.0% |
| ! | CCCTTCATTTTCTTCACTAA+TGG | + | chr8_2:66060541-66060560 | Msa1263020:intron | 35.0% |
| AACATGATGTTGATCAGACA+AGG | + | chr8_2:66060698-66060717 | Msa1263020:intron | 35.0% | |
| GGATATAAACGCAATACTTG+AGG | + | chr8_2:66060964-66060983 | Msa1263020:intron | 35.0% | |
| AAGGAAGTTGGATGATTTCT+GGG | - | chr8_2:66061025-66061044 | None:intergenic | 35.0% | |
| AAAGGAAGTTGGATGATTTC+TGG | - | chr8_2:66061026-66061045 | None:intergenic | 35.0% | |
| ! | CAACTTCCTTTGAAGAAGAT+GGG | + | chr8_2:66061035-66061054 | Msa1263020:CDS | 35.0% |
| CGGCGTAAATAACTTATCAA+GGG | - | chr8_2:66061101-66061120 | None:intergenic | 35.0% | |
| CCTTGATAAGTTATTTACGC+CGG | + | chr8_2:66061099-66061118 | Msa1263020:CDS | 35.0% | |
| TATTCCTTGCCAAATTGACC+AGG | + | chr8_2:66057864-66057883 | Msa1263020:CDS | 40.0% | |
| ACTTTATAGACGAAATCGGC+AGG | - | chr8_2:66058073-66058092 | None:intergenic | 40.0% | |
| GTAAATGGATAGGGTGTGTT+TGG | + | chr8_2:66058172-66058191 | Msa1263020:intron | 40.0% | |
| GTTAAAGTAGGGCAAAAGGA+AGG | + | chr8_2:66058438-66058457 | Msa1263020:intron | 40.0% | |
| TACAGAACACAGATTAGGAC+AGG | + | chr8_2:66058489-66058508 | Msa1263020:intron | 40.0% | |
| ACAGAACACAGATTAGGACA+GGG | + | chr8_2:66058490-66058509 | Msa1263020:intron | 40.0% | |
| ACACAATGGTAATCGAGTCA+GGG | - | chr8_2:66058590-66058609 | None:intergenic | 40.0% | |
| ! | AACACTTCCACCATTGCTTT+TGG | - | chr8_2:66059124-66059143 | None:intergenic | 40.0% |
| !!! | AAGCAATGGTGGAAGTGTTT+TGG | + | chr8_2:66059125-66059144 | Msa1263020:intron | 40.0% |
| ATTGTTATGCTGGAAGATCG+AGG | + | chr8_2:66059151-66059170 | Msa1263020:intron | 40.0% | |
| ! | GCTTTTATAATTGAGTGCCC+TGG | + | chr8_2:66059213-66059232 | Msa1263020:intron | 40.0% |
| TTTATAATTGAGTGCCCTGG+GGG | + | chr8_2:66059216-66059235 | Msa1263020:intron | 40.0% | |
| TCACATGCCCAAAGTAAACA+AGG | - | chr8_2:66059555-66059574 | None:intergenic | 40.0% | |
| ATGATAGTCACACTGAAAGG+TGG | - | chr8_2:66059726-66059745 | None:intergenic | 40.0% | |
| TGGCATATCTGATGAAGTCT+CGG | + | chr8_2:66059748-66059767 | Msa1263020:CDS | 40.0% | |
| TGACTAATGAAACCGCGATT+TGG | - | chr8_2:66059831-66059850 | None:intergenic | 40.0% | |
| ! | TTTGATGGCTATGGCTATAG+AGG | - | chr8_2:66059986-66060005 | None:intergenic | 40.0% |
| TCTGTCAAAATGGAGCTTCA+TGG | + | chr8_2:66060432-66060451 | Msa1263020:intron | 40.0% | |
| CTGTCAAAATGGAGCTTCAT+GGG | + | chr8_2:66060433-66060452 | Msa1263020:intron | 40.0% | |
| GTAGATGATTAGTGTGACTC+TGG | + | chr8_2:66060725-66060744 | Msa1263020:intron | 40.0% | |
| CAGCATTTCATGAAATAGGC+TGG | - | chr8_2:66060857-66060876 | None:intergenic | 40.0% | |
| CCATCTTCTTCAAAGGAAGT+TGG | - | chr8_2:66061037-66061056 | None:intergenic | 40.0% | |
| ! | CCAACTTCCTTTGAAGAAGA+TGG | + | chr8_2:66061034-66061053 | Msa1263020:CDS | 40.0% |
| CCGGCGTAAATAACTTATCA+AGG | - | chr8_2:66061102-66061121 | None:intergenic | 40.0% | |
| !! | AAAGTGGACTAGTCATAACG+TGG | + | chr8_2:66061151-66061170 | Msa1263020:three_prime_UTR | 40.0% |
| AACGTGGTTAATTCCATCCA+TGG | + | chr8_2:66061167-66061186 | Msa1263020:three_prime_UTR | 40.0% | |
| AATTCCATCCATGGAGTCAT+AGG | + | chr8_2:66061176-66061195 | Msa1263020:three_prime_UTR | 40.0% | |
| ACTACCTGGTCAATTTGGCA+AGG | - | chr8_2:66057871-66057890 | None:intergenic | 45.0% | |
| !! | GGTTTGTTTCTGGGTTCTGT+TGG | + | chr8_2:66057965-66057984 | Msa1263020:CDS | 45.0% |
| !! | TGTTGGTTCTGCTACGAACA+AGG | + | chr8_2:66057982-66058001 | Msa1263020:CDS | 45.0% |
| !!! | ACTCACATTTTGACTGTGGC+TGG | + | chr8_2:66058028-66058047 | Msa1263020:intron | 45.0% |
| !!! | CTCACATTTTGACTGTGGCT+GGG | + | chr8_2:66058029-66058048 | Msa1263020:intron | 45.0% |
| ATAGACGAAATCGGCAGGAT+GGG | - | chr8_2:66058068-66058087 | None:intergenic | 45.0% | |
| TATAGACGAAATCGGCAGGA+TGG | - | chr8_2:66058069-66058088 | None:intergenic | 45.0% | |
| AAACCTGTCAGTGTCATGTC+TGG | - | chr8_2:66058146-66058165 | None:intergenic | 45.0% | |
| TGGAAATACATCTCTCCCTC+CGG | + | chr8_2:66058192-66058211 | Msa1263020:intron | 45.0% | |
| TGCTTACATATGTGACCGGA+GGG | - | chr8_2:66058210-66058229 | None:intergenic | 45.0% | |
| TTGCTTACATATGTGACCGG+AGG | - | chr8_2:66058211-66058230 | None:intergenic | 45.0% | |
| GCTCGACCTTATATTGCATC+TGG | - | chr8_2:66058288-66058307 | None:intergenic | 45.0% | |
| AAAGTAGGGCAAAAGGAAGG+AGG | + | chr8_2:66058441-66058460 | Msa1263020:intron | 45.0% | |
| AAGTAGGGCAAAAGGAAGGA+GGG | + | chr8_2:66058442-66058461 | Msa1263020:intron | 45.0% | |
| AACACAGATTAGGACAGGGT+CGG | + | chr8_2:66058494-66058513 | Msa1263020:intron | 45.0% | |
| GTGACAATGGTGCGTGTTTA+GGG | + | chr8_2:66058536-66058555 | Msa1263020:intron | 45.0% | |
| AATGGTAATCGAGTCAGGGT+CGG | - | chr8_2:66058586-66058605 | None:intergenic | 45.0% | |
| CACACAATGGTAATCGAGTC+AGG | - | chr8_2:66058591-66058610 | None:intergenic | 45.0% | |
| !! | CTATCTGAAGTGTCGAGTAG+TGG | - | chr8_2:66058652-66058671 | None:intergenic | 45.0% |
| CACTACTCGACACTTCAGAT+AGG | + | chr8_2:66058650-66058669 | Msa1263020:intron | 45.0% | |
| ! | ATGAGAGTGCACAGCATTTG+AGG | + | chr8_2:66058910-66058929 | Msa1263020:intron | 45.0% |
| TGAGGAAGTTGCTGACAAAG+AGG | + | chr8_2:66059047-66059066 | Msa1263020:intron | 45.0% | |
| GATGAAGCCAAAAGCAATGG+TGG | + | chr8_2:66059114-66059133 | Msa1263020:intron | 45.0% | |
| GGCATATCTGATGAAGTCTC+GGG | + | chr8_2:66059749-66059768 | Msa1263020:CDS | 45.0% | |
| GCATATCTGATGAAGTCTCG+GGG | + | chr8_2:66059750-66059769 | Msa1263020:CDS | 45.0% | |
| GTAATCTAGCAGAGTGTGCA+TGG | + | chr8_2:66060103-66060122 | Msa1263020:intron | 45.0% | |
| TAGCAGAGTGTGCATGGTAA+AGG | + | chr8_2:66060109-66060128 | Msa1263020:intron | 45.0% | |
| ! | TGTGAAGACATCGAAGTGTC+TGG | + | chr8_2:66060669-66060688 | Msa1263020:intron | 45.0% |
| ! | GTGAAGACATCGAAGTGTCT+GGG | + | chr8_2:66060670-66060689 | Msa1263020:intron | 45.0% |
| AAGACAAGGCAGCATGAGTT+AGG | + | chr8_2:66060758-66060777 | Msa1263020:intron | 45.0% | |
| AGACAAGGCAGCATGAGTTA+GGG | + | chr8_2:66060759-66060778 | Msa1263020:intron | 45.0% | |
| TGAAACTTCATCCTCAGGTG+CGG | + | chr8_2:66060790-66060809 | Msa1263020:intron | 45.0% | |
| CCTTCTCCCATCTTCTTCAA+AGG | - | chr8_2:66061044-66061063 | None:intergenic | 45.0% | |
| ! | CCTTTGAAGAAGATGGGAGA+AGG | + | chr8_2:66061041-66061060 | Msa1263020:CDS | 45.0% |
| !! | TTGTATATATATATATATAT+TGG | - | chr8_2:66059925-66059944 | None:intergenic | 5.0% |
| !! | AAAAAAAAATTATAAAAGAA+AGG | - | chr8_2:66060357-66060376 | None:intergenic | 5.0% |
| GGTTCTGCTACGAACAAGGT+TGG | + | chr8_2:66057986-66058005 | Msa1263020:intron | 50.0% | |
| ACACCAGACATGACACTGAC+AGG | + | chr8_2:66058140-66058159 | Msa1263020:intron | 50.0% | |
| ACACAGATTAGGACAGGGTC+GGG | + | chr8_2:66058495-66058514 | Msa1263020:intron | 50.0% | |
| GGTGACAATGGTGCGTGTTT+AGG | + | chr8_2:66058535-66058554 | Msa1263020:intron | 50.0% | |
| ACAATGGTGCGTGTTTAGGG+AGG | + | chr8_2:66058539-66058558 | Msa1263020:intron | 50.0% | |
| GTTATGCTGGAAGATCGAGG+AGG | + | chr8_2:66059154-66059173 | Msa1263020:intron | 50.0% | |
| AATGTTAGCAAGTGCCCCCA+GGG | - | chr8_2:66059233-66059252 | None:intergenic | 50.0% | |
| AAATGTTAGCAAGTGCCCCC+AGG | - | chr8_2:66059234-66059253 | None:intergenic | 50.0% | |
| TCGCGGTTTCATTAGTCAGC+TGG | + | chr8_2:66059833-66059852 | Msa1263020:CDS | 50.0% | |
| CTGGCAATCACGTGAAGACA+AGG | + | chr8_2:66060744-66060763 | Msa1263020:intron | 50.0% | |
| AGGCAGCATGAGTTAGGGAT+TGG | + | chr8_2:66060764-66060783 | Msa1263020:intron | 50.0% | |
| ! | GGCACTGAAACTTCATCCTC+AGG | + | chr8_2:66060785-66060804 | Msa1263020:intron | 50.0% |
| GGCAAAAGGAAGGAGGGAAG+CGG | + | chr8_2:66058448-66058467 | Msa1263020:intron | 55.0% | |
| AAAAGGAAGGAGGGAAGCGG+CGG | + | chr8_2:66058451-66058470 | Msa1263020:intron | 55.0% | |
| ATGGTGCGTGTTTAGGGAGG+CGG | + | chr8_2:66058542-66058561 | Msa1263020:intron | 55.0% | |
| CCACAAGCAGCTCCAAATCG+CGG | + | chr8_2:66059816-66059835 | Msa1263020:CDS | 55.0% | |
| ACGAAATCGGCAGGATGGGC+AGG | - | chr8_2:66058064-66058083 | None:intergenic | 60.0% | |
| TGGTGCGTGTTTAGGGAGGC+GGG | + | chr8_2:66058543-66058562 | Msa1263020:intron | 60.0% | |
| ! | CCGCGATTTGGAGCTGCTTG+TGG | - | chr8_2:66059819-66059838 | None:intergenic | 60.0% |
| AACTGGGACTTCCGCACCTG+AGG | - | chr8_2:66060804-66060823 | None:intergenic | 60.0% | |
| AGGAGGGAAGCGGCGGTAGT+CGG | + | chr8_2:66058458-66058477 | Msa1263020:intron | 65.0% | |
| CGTGTTTAGGGAGGCGGGTC+AGG | + | chr8_2:66058548-66058567 | Msa1263020:intron | 65.0% | |
| GTTTAGGGAGGCGGGTCAGG+TGG | + | chr8_2:66058551-66058570 | Msa1263020:intron | 65.0% | |
| GGAGGGAAGCGGCGGTAGTC+GGG | + | chr8_2:66058459-66058478 | Msa1263020:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 66057628 | 66061201 | 66057628 | ID=Msa1263020;Name=Msa1263020 |
| chr8_2 | mRNA | 66057628 | 66061201 | 66057628 | ID=Msa1263020-mRNA-1;Parent=Msa1263020;Name=Msa1263020-mRNA-1;_AED=0.37;_eAED=0.37;_QI=129|0.4|0.5|0.83|0.4|0.66|6|75|148 |
| chr8_2 | exon | 66057628 | 66057885 | 66057628 | ID=Msa1263020-mRNA-1:exon:21528;Parent=Msa1263020-mRNA-1 |
| chr8_2 | exon | 66057965 | 66058003 | 66057965 | ID=Msa1263020-mRNA-1:exon:21529;Parent=Msa1263020-mRNA-1 |
| chr8_2 | exon | 66059505 | 66059521 | 66059505 | ID=Msa1263020-mRNA-1:exon:21530;Parent=Msa1263020-mRNA-1 |
| chr8_2 | exon | 66059734 | 66059879 | 66059734 | ID=Msa1263020-mRNA-1:exon:21531;Parent=Msa1263020-mRNA-1 |
| chr8_2 | exon | 66060676 | 66060691 | 66060676 | ID=Msa1263020-mRNA-1:exon:21532;Parent=Msa1263020-mRNA-1 |
| chr8_2 | exon | 66061027 | 66061201 | 66061027 | ID=Msa1263020-mRNA-1:exon:21533;Parent=Msa1263020-mRNA-1 |
| chr8_2 | five_prime_UTR | 66057628 | 66057756 | 66057628 | ID=Msa1263020-mRNA-1:five_prime_utr;Parent=Msa1263020-mRNA-1 |
| chr8_2 | CDS | 66057757 | 66057885 | 66057757 | ID=Msa1263020-mRNA-1:cds;Parent=Msa1263020-mRNA-1 |
| chr8_2 | CDS | 66057965 | 66058003 | 66057965 | ID=Msa1263020-mRNA-1:cds;Parent=Msa1263020-mRNA-1 |
| chr8_2 | CDS | 66059505 | 66059521 | 66059505 | ID=Msa1263020-mRNA-1:cds;Parent=Msa1263020-mRNA-1 |
| chr8_2 | CDS | 66059734 | 66059879 | 66059734 | ID=Msa1263020-mRNA-1:cds;Parent=Msa1263020-mRNA-1 |
| chr8_2 | CDS | 66060676 | 66060691 | 66060676 | ID=Msa1263020-mRNA-1:cds;Parent=Msa1263020-mRNA-1 |
| chr8_2 | CDS | 66061027 | 66061126 | 66061027 | ID=Msa1263020-mRNA-1:cds;Parent=Msa1263020-mRNA-1 |
| chr8_2 | three_prime_UTR | 66061127 | 66061201 | 66061127 | ID=Msa1263020-mRNA-1:three_prime_utr;Parent=Msa1263020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
