Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152140 | sp|Q8S9K3|VAR3_ARATH | 28.972 | 321 | 163 | 9 | 65 | 379 | 93 | 354 | 2.75e-33 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152140 | A0A072VGP2 | 92.885 | 506 | 36 | 0 | 1 | 506 | 1 | 506 | 0.0 | 965 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012080 | Msa0152140 | 0.942204 | 1.087615e-101 | -8.615850e-47 |
| Msa0032090 | Msa0152140 | 0.819177 | 1.332108e-52 | -8.615850e-47 |
| Msa0032580 | Msa0152140 | 0.817540 | 3.128440e-52 | -8.615850e-47 |
| Msa0040690 | Msa0152140 | 0.817760 | 2.789457e-52 | -8.615850e-47 |
| Msa0041720 | Msa0152140 | 0.815423 | 9.316368e-52 | -8.615850e-47 |
| Msa0053600 | Msa0152140 | 0.818349 | 2.053166e-52 | -8.615850e-47 |
| Msa0054440 | Msa0152140 | 0.803977 | 2.694485e-49 | -8.615850e-47 |
| Msa0063890 | Msa0152140 | 0.802873 | 4.562621e-49 | -8.615850e-47 |
| Msa0074320 | Msa0152140 | 0.813011 | 3.175686e-51 | -8.615850e-47 |
| Msa0079380 | Msa0152140 | 0.802921 | 4.458950e-49 | -8.615850e-47 |
| Msa0099220 | Msa0152140 | 0.814645 | 1.386750e-51 | -8.615850e-47 |
| Msa0101440 | Msa0152140 | 0.804299 | 2.308598e-49 | -8.615850e-47 |
| Msa0136070 | Msa0152140 | 0.827944 | 1.182494e-54 | -8.615850e-47 |
| Msa0136100 | Msa0152140 | 0.819205 | 1.312490e-52 | -8.615850e-47 |
| Msa0144370 | Msa0152140 | 0.802244 | 6.149972e-49 | -8.615850e-47 |
| Msa0150820 | Msa0152140 | 0.806720 | 7.173922e-50 | -8.615850e-47 |
| Msa0152140 | Msa0172070 | 0.801597 | 8.352361e-49 | -8.615850e-47 |
| Msa0152140 | Msa0172970 | 0.818197 | 2.222337e-52 | -8.615850e-47 |
| Msa0152140 | Msa0187120 | 0.817915 | 2.573585e-52 | -8.615850e-47 |
| Msa0152140 | Msa0187690 | 0.801043 | 1.084636e-48 | -8.615850e-47 |
| Msa0152140 | Msa0189300 | 0.810718 | 1.002752e-50 | -8.615850e-47 |
| Msa0152140 | Msa0197660 | 0.805917 | 1.058782e-49 | -8.615850e-47 |
| Msa0152140 | Msa0212310 | 0.801511 | 8.698182e-49 | -8.615850e-47 |
| Msa0152140 | Msa0239800 | 0.811297 | 7.513776e-51 | -8.615850e-47 |
| Msa0152140 | Msa0241470 | 0.804442 | 2.155945e-49 | -8.615850e-47 |
| Msa0152140 | Msa0262340 | 0.801673 | 8.058191e-49 | -8.615850e-47 |
| Msa0152140 | Msa0279700 | 0.802434 | 5.619791e-49 | -8.615850e-47 |
| Msa0152140 | Msa0317510 | 0.802782 | 4.764834e-49 | -8.615850e-47 |
| Msa0152140 | Msa0337620 | 0.806238 | 9.062998e-50 | -8.615850e-47 |
| Msa0152140 | Msa0402650 | 0.801421 | 9.077763e-49 | -8.615850e-47 |
| Msa0152140 | Msa0432770 | 0.807602 | 4.664289e-50 | -8.615850e-47 |
| Msa0152140 | Msa0511310 | 0.818043 | 2.408363e-52 | -8.615850e-47 |
| Msa0152140 | Msa0529890 | 0.804549 | 2.048346e-49 | -8.615850e-47 |
| Msa0152140 | Msa0584860 | 0.800035 | 1.740405e-48 | -8.615850e-47 |
| Msa0152140 | Msa0615440 | 0.800581 | 1.347891e-48 | -8.615850e-47 |
| Msa0152140 | Msa0625720 | 0.806002 | 1.016096e-49 | -8.615850e-47 |
| Msa0152140 | Msa0689010 | 0.800626 | 1.319766e-48 | -8.615850e-47 |
| Msa0152140 | Msa0698490 | 0.801511 | 8.698484e-49 | -8.615850e-47 |
| Msa0152140 | Msa0722960 | 0.814731 | 1.326763e-51 | -8.615850e-47 |
| Msa0152140 | Msa0763830 | 0.818704 | 1.706019e-52 | -8.615850e-47 |
| Msa0152140 | Msa0793800 | 0.807773 | 4.291930e-50 | -8.615850e-47 |
| Msa0152140 | Msa0796530 | 0.802250 | 6.132691e-49 | -8.615850e-47 |
| Msa0152140 | Msa0831530 | 0.808975 | 2.378397e-50 | -8.615850e-47 |
| Msa0152140 | Msa0999970 | 0.800377 | 1.482924e-48 | -8.615850e-47 |
| Msa0152140 | Msa1079230 | 0.806349 | 8.587965e-50 | -8.615850e-47 |
| Msa0152140 | Msa1080640 | 0.816686 | 4.866833e-52 | -8.615850e-47 |
| Msa0152140 | Msa1104140 | 0.808911 | 2.454273e-50 | -8.615850e-47 |
| Msa0152140 | Msa1106700 | 0.814176 | 1.760614e-51 | -8.615850e-47 |
| Msa0152140 | Msa1263020 | 0.803840 | 2.876630e-49 | -8.615850e-47 |
| Msa0152140 | Msa1280420 | 0.800617 | 1.325239e-48 | -8.615850e-47 |
| Msa0152140 | Msa1287460 | 0.811420 | 7.065900e-51 | -8.615850e-47 |
| Msa0152140 | Msa1344340 | 0.839632 | 1.410480e-57 | -8.615850e-47 |
| Msa0152140 | Msa1385100 | 0.820973 | 5.167633e-53 | -8.615850e-47 |
| Msa0152140 | Msa1394290 | 0.804762 | 1.848580e-49 | -8.615850e-47 |
| Msa0152140 | Msa1423350 | 0.829691 | 4.468898e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152140 | MtrunA17_Chr1g0161121 | 92.885 | 506 | 36 | 0 | 1 | 506 | 1 | 506 | 0.0 | 965 |
| Msa0152140 | MtrunA17_Chr6g0478341 | 37.822 | 349 | 182 | 9 | 39 | 365 | 82 | 417 | 1.23e-75 | 247 |
| Msa0152140 | MtrunA17_Chr6g0478341 | 35.374 | 147 | 60 | 5 | 255 | 388 | 384 | 508 | 2.43e-20 | 94.0 |
| Msa0152140 | MtrunA17_Chr7g0272741 | 40.199 | 301 | 128 | 9 | 59 | 327 | 123 | 403 | 3.55e-62 | 218 |
| Msa0152140 | MtrunA17_Chr7g0254331 | 25.723 | 311 | 166 | 8 | 54 | 364 | 70 | 315 | 2.31e-30 | 125 |
| Msa0152140 | MtrunA17_Chr2g0315221 | 28.671 | 143 | 92 | 2 | 101 | 240 | 144 | 279 | 5.86e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152140 | AT1G70650.1 | 46.476 | 454 | 190 | 7 | 61 | 499 | 43 | 458 | 1.93e-130 | 387 |
| Msa0152140 | AT1G70650.2 | 59.873 | 314 | 118 | 3 | 61 | 373 | 43 | 349 | 7.31e-128 | 385 |
| Msa0152140 | AT1G48570.1 | 33.161 | 386 | 175 | 6 | 62 | 368 | 60 | 441 | 8.36e-65 | 217 |
| Msa0152140 | AT1G55040.1 | 37.931 | 348 | 155 | 7 | 53 | 378 | 138 | 446 | 3.01e-64 | 224 |
| Msa0152140 | AT5G17790.1 | 28.972 | 321 | 163 | 9 | 65 | 379 | 93 | 354 | 2.79e-34 | 137 |
| Msa0152140 | AT1G53460.1 | 28.283 | 198 | 128 | 6 | 43 | 231 | 120 | 312 | 4.02e-13 | 70.9 |
Find 109 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTCTATGATCACATTTC+AGG | 0.201359 | 1_4:-14693079 | None:intergenic |
| AGAACTGCTTGTCTCAATTT+TGG | 0.211302 | 1_4:+14690422 | Msa0152140:CDS |
| AATGGAATGTTTGATCAAAA+AGG | 0.218735 | 1_4:+14690331 | Msa0152140:CDS |
| ATAAGCTATATTGGAAAATT+AGG | 0.237678 | 1_4:+14693718 | Msa0152140:three_prime_UTR |
| TTGTTGTTGATTCCTCCTTT+TGG | 0.239852 | 1_4:-14690255 | None:intergenic |
| GCCTGAATGGGTAGACTTAA+TGG | 0.240391 | 1_4:+14690313 | Msa0152140:CDS |
| TTCTGATGTTCAAATTCTTT+TGG | 0.248047 | 1_4:+14693860 | Msa0152140:three_prime_UTR |
| TCCATTAAGTCTACCCATTC+AGG | 0.266961 | 1_4:-14690314 | None:intergenic |
| TCAGTGGAGTTGTAAAATTT+TGG | 0.273082 | 1_4:+14693683 | Msa0152140:three_prime_UTR |
| CAATATATGTAAAATACTTT+AGG | 0.279550 | 1_4:+14693609 | Msa0152140:three_prime_UTR |
| ATCCATGTCATAAGCTATAT+TGG | 0.286388 | 1_4:+14693709 | Msa0152140:three_prime_UTR |
| CCCATTTGAGAATCCTCATT+TGG | 0.292860 | 1_4:+14690376 | Msa0152140:CDS |
| CAAACCATCTCTAAATAAAA+TGG | 0.297671 | 1_4:+14692361 | Msa0152140:CDS |
| GACATCGTTTCAAAATGTTT+TGG | 0.303291 | 1_4:-14690127 | None:intergenic |
| ATAAGAGTTATTGTAACATT+TGG | 0.303310 | 1_4:+14692007 | Msa0152140:CDS |
| ACTTTGCCAAGCATGCCTTT+TGG | 0.337086 | 1_4:-14693417 | None:intergenic |
| TTATATACTTCTGCCCTTTG+TGG | 0.339392 | 1_4:-14693374 | None:intergenic |
| CTCTTTCTTTCTGACGTCCT+TGG | 0.340613 | 1_4:-14693218 | None:intergenic |
| ACAAGCAGTTCTAATAAGAT+TGG | 0.365761 | 1_4:-14690411 | None:intergenic |
| TGGGTTCATCAAACTCGTTT+TGG | 0.373402 | 1_4:-14690235 | None:intergenic |
| ATGGTCATAGCGTTTCTTCC+TGG | 0.386668 | 1_4:-14693537 | None:intergenic |
| AGAGAACTCAAATGATAATT+CGG | 0.394481 | 1_4:+14693304 | Msa0152140:CDS |
| CCATTTGAGAATCCTCATTT+GGG | 0.404604 | 1_4:+14690377 | Msa0152140:CDS |
| CCCAAATGAGGATTCTCAAA+TGG | 0.413706 | 1_4:-14690377 | None:intergenic |
| TTTCTCATCCATGGCCTGAA+TGG | 0.413730 | 1_4:+14690300 | Msa0152140:CDS |
| GGATTAATGCGACGGTTTGA+AGG | 0.414616 | 1_4:-14692921 | None:intergenic |
| AGAATTCAAGGTAGAATTCC+AGG | 0.417415 | 1_4:+14693519 | Msa0152140:exon |
| TTATCCACTGAACCGATGAT+TGG | 0.424796 | 1_4:-14692338 | None:intergenic |
| GATGAGATGGCCGAATGGTT+TGG | 0.424798 | 1_4:+14693488 | Msa0152140:CDS |
| CTAGTCTTACCTCCAGCAAT+AGG | 0.425161 | 1_4:-14693341 | None:intergenic |
| ACAGCAACCTCTGTGATGTC+TGG | 0.445160 | 1_4:-14692455 | None:intergenic |
| TTGGAAAGGGTAAGAATTCA+AGG | 0.445851 | 1_4:+14693507 | Msa0152140:CDS |
| ATCAGTCCAAAAGGCATGCT+TGG | 0.456188 | 1_4:+14693411 | Msa0152140:CDS |
| TTTACCTTAAAATATGAGAA+TGG | 0.456797 | 1_4:-14690451 | None:intergenic |
| TTTGAAGCATTTGACACCTT+AGG | 0.458210 | 1_4:-14693101 | None:intergenic |
| CATCTGAATCCTCTAGATAA+GGG | 0.463100 | 1_4:+14692488 | Msa0152140:CDS |
| TAGTCACTTACCTTTGAAGA+AGG | 0.465479 | 1_4:+14692742 | Msa0152140:CDS |
| TTGTATTCTTTGCAAAATTG+AGG | 0.466161 | 1_4:-14692875 | None:intergenic |
| GACTCGCATTCCCACTCCCC+TGG | 0.466634 | 1_4:-14692942 | None:intergenic |
| TCAAACCGTCGCATTAATCC+AGG | 0.470383 | 1_4:+14692924 | Msa0152140:CDS |
| GTGTAGCTCGTGTAATTTGA+GGG | 0.472320 | 1_4:+14692223 | Msa0152140:CDS |
| TCATCTGAATCCTCTAGATA+AGG | 0.474013 | 1_4:+14692487 | Msa0152140:CDS |
| CCAAATGAGGATTCTCAAAT+GGG | 0.479518 | 1_4:-14690376 | None:intergenic |
| TTCTCATCCATGGCCTGAAT+GGG | 0.481289 | 1_4:+14690301 | Msa0152140:CDS |
| CTTACCCTTTCCAAACCATT+CGG | 0.484967 | 1_4:-14693498 | None:intergenic |
| TATCCACTGAACCGATGATT+GGG | 0.490233 | 1_4:-14692337 | None:intergenic |
| TACCTTTGAAGAAGGGAGAC+TGG | 0.492224 | 1_4:+14692750 | Msa0152140:CDS |
| TGATATTTCTAGCAAAGTTG+TGG | 0.505369 | 1_4:-14692661 | None:intergenic |
| TCTGTGATGTCTGGAAAAGT+AGG | 0.505791 | 1_4:-14692446 | None:intergenic |
| CTGTGATGTCTGGAAAAGTA+GGG | 0.507201 | 1_4:-14692445 | None:intergenic |
| TTCAGTTAAAGCAAGGCGAT+TGG | 0.509614 | 1_4:+14692522 | Msa0152140:CDS |
| AAGATGTTTGCAATGTAAAG+AGG | 0.517495 | 1_4:+14692896 | Msa0152140:CDS |
| AACCGATATCCTGCAAAAGC+AGG | 0.518241 | 1_4:-14693176 | None:intergenic |
| TGTGTAGCTCGTGTAATTTG+AGG | 0.526404 | 1_4:+14692222 | Msa0152140:CDS |
| AAGTCGAGATTTGTAGAAGA+AGG | 0.530158 | 1_4:+14693260 | Msa0152140:CDS |
| AGATGTTTGCAATGTAAAGA+GGG | 0.532782 | 1_4:+14692897 | Msa0152140:CDS |
| AGTCGCCAAATCAGTCCAAA+AGG | 0.534449 | 1_4:+14693402 | Msa0152140:CDS |
| ATCTCATCATCATCGGTACT+CGG | 0.534616 | 1_4:-14693473 | None:intergenic |
| GTGAAAGCACGCGAAGATGA+AGG | 0.540296 | 1_4:+14692266 | Msa0152140:CDS |
| GGATGAGAAATCTGAAAAGC+GGG | 0.543444 | 1_4:-14690287 | None:intergenic |
| CATCAATTTCAGAAGAAACA+TGG | 0.543784 | 1_4:+14693052 | Msa0152140:CDS |
| AAGTCTACCCATTCAGGCCA+TGG | 0.546110 | 1_4:-14690308 | None:intergenic |
| AGTCACTTACCTTTGAAGAA+GGG | 0.549272 | 1_4:+14692743 | Msa0152140:CDS |
| GTCGCATTAATCCAGGGGAG+TGG | 0.553077 | 1_4:+14692931 | Msa0152140:CDS |
| ACGAGTTTGATGAACCCAAA+AGG | 0.559599 | 1_4:+14690240 | Msa0152140:CDS |
| GATAGAAAAGTGGTCAACTC+AGG | 0.561924 | 1_4:+14692043 | Msa0152140:CDS |
| ACTCCCCTGGATTAATGCGA+CGG | 0.562909 | 1_4:-14692929 | None:intergenic |
| GGACGTCAGAAAGAAAGAGC+AGG | 0.564051 | 1_4:+14693222 | Msa0152140:CDS |
| ATGTGATCATAGAAGACCTA+AGG | 0.565819 | 1_4:+14693085 | Msa0152140:CDS |
| TAGCATGTCTGAGCCACAAA+GGG | 0.568510 | 1_4:+14693361 | Msa0152140:CDS |
| ATCCAGTCTCCCTTCTTCAA+AGG | 0.570994 | 1_4:-14692752 | None:intergenic |
| TCGCATTAATCCAGGGGAGT+GGG | 0.573860 | 1_4:+14692932 | Msa0152140:CDS |
| AGCATATGCAGGCATTGATG+AGG | 0.574530 | 1_4:+14692078 | Msa0152140:CDS |
| CACCTAGGTCAGTGTCTCAG+TGG | 0.574708 | 1_4:+14693667 | Msa0152140:three_prime_UTR |
| TATGGACTTGACCCAATCAT+CGG | 0.575562 | 1_4:+14692326 | Msa0152140:CDS |
| TCCAAGCTTAGATAGAAAAG+TGG | 0.585923 | 1_4:+14692033 | Msa0152140:CDS |
| AAGCGTCTGAGAGCATATGC+AGG | 0.588329 | 1_4:+14692067 | Msa0152140:CDS |
| AAAGATGTTCAGTTAAAGCA+AGG | 0.588511 | 1_4:+14692515 | Msa0152140:CDS |
| TGACCCAATCATCGGTTCAG+TGG | 0.589471 | 1_4:+14692334 | Msa0152140:CDS |
| TTCGGCCATCTCATCATCAT+CGG | 0.594552 | 1_4:-14693480 | None:intergenic |
| TAGACAATAATGACAAGCAA+AGG | 0.597663 | 1_4:+14693817 | Msa0152140:three_prime_UTR |
| GATGGCCGAATGGTTTGGAA+AGG | 0.598136 | 1_4:+14693493 | Msa0152140:CDS |
| ATGGCCGAATGGTTTGGAAA+GGG | 0.602894 | 1_4:+14693494 | Msa0152140:CDS |
| AAGGGTCATTTCCATGCAGA+GGG | 0.606250 | 1_4:+14690350 | Msa0152140:CDS |
| AGAAGAGCAAAACTCATCAT+CGG | 0.606713 | 1_4:-14693444 | None:intergenic |
| GAGTACCGATGATGATGAGA+TGG | 0.609459 | 1_4:+14693475 | Msa0152140:CDS |
| GCATATGCAGGCATTGATGA+GGG | 0.610102 | 1_4:+14692079 | Msa0152140:CDS |
| CTAGCATGTCTGAGCCACAA+AGG | 0.611817 | 1_4:+14693360 | Msa0152140:CDS |
| CAAATGGGTTACCCTCTGCA+TGG | 0.612877 | 1_4:-14690361 | None:intergenic |
| TTCCAATATAGCTTATGACA+TGG | 0.614328 | 1_4:-14693711 | None:intergenic |
| GTAGCTCGTGTAATTTGAGG+GGG | 0.617394 | 1_4:+14692225 | Msa0152140:CDS |
| AAAGGGTCATTTCCATGCAG+AGG | 0.627587 | 1_4:+14690349 | Msa0152140:CDS |
| CAAACCGTCGCATTAATCCA+GGG | 0.628686 | 1_4:+14692925 | Msa0152140:CDS |
| TGGATGAGAAATCTGAAAAG+CGG | 0.630241 | 1_4:-14690288 | None:intergenic |
| TGTAGCTCGTGTAATTTGAG+GGG | 0.631403 | 1_4:+14692224 | Msa0152140:CDS |
| CTCCACTGAGACACTGACCT+AGG | 0.648395 | 1_4:-14693669 | None:intergenic |
| TGAAAGAATATGTTGCACCT+AGG | 0.653179 | 1_4:+14693652 | Msa0152140:three_prime_UTR |
| CACAGAAGTTGTCACAGTGG+AGG | 0.658565 | 1_4:-14692688 | None:intergenic |
| AGTTTGATGAACCCAAAAGG+AGG | 0.661079 | 1_4:+14690243 | Msa0152140:CDS |
| AAACCGTCGCATTAATCCAG+GGG | 0.661201 | 1_4:+14692926 | Msa0152140:CDS |
| AAAGCACGCGAAGATGAAGG+TGG | 0.663438 | 1_4:+14692269 | Msa0152140:CDS |
| TGTGATGTCTGGAAAAGTAG+GGG | 0.672970 | 1_4:-14692444 | None:intergenic |
| GGACAAATAGAAAGATACAT+CGG | 0.674506 | 1_4:+14693751 | Msa0152140:three_prime_UTR |
| ATGATGATGAGATGGCCGAA+TGG | 0.677784 | 1_4:+14693483 | Msa0152140:CDS |
| CCTCACAGAAGTTGTCACAG+TGG | 0.690453 | 1_4:-14692691 | None:intergenic |
| GATGTTTGCAATGTAAAGAG+GGG | 0.691261 | 1_4:+14692898 | Msa0152140:CDS |
| TAGCTCGTGTAATTTGAGGG+GGG | 0.711244 | 1_4:+14692226 | Msa0152140:CDS |
| ATAGTAACAAAGAATCACCA+AGG | 0.722066 | 1_4:+14693201 | Msa0152140:CDS |
| CCACTGTGACAACTTCTGTG+AGG | 0.726288 | 1_4:+14692691 | Msa0152140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAAGGTAAATAAAAA+TGG | + | chr1_4:14690460-14690479 | Msa0152140:intron | 10.0% |
| !!! | ATTTTAAGGTAAATAAAAAT+GGG | + | chr1_4:14690461-14690480 | Msa0152140:intron | 10.0% |
| !! | AAAAAAAGTTAATGTCAATT+TGG | + | chr1_4:14691865-14691884 | Msa0152140:intron | 15.0% |
| !!! | TTTTGTTATTTTGTTTTACT+CGG | + | chr1_4:14692994-14693013 | Msa0152140:intron | 15.0% |
| !! | CAATATATGTAAAATACTTT+AGG | + | chr1_4:14693609-14693628 | Msa0152140:three_prime_UTR | 15.0% |
| !!! | CATTCAAATATGTTTTTGTT+GGG | - | chr1_4:14690169-14690188 | None:intergenic | 20.0% |
| !! | TTTACCTTAAAATATGAGAA+TGG | - | chr1_4:14690454-14690473 | None:intergenic | 20.0% |
| !!! | TTCTAAAATAACCAAAAATG+TGG | + | chr1_4:14691283-14691302 | Msa0152140:intron | 20.0% |
| !! | GTAAATTACAAGAAAAAAGA+AGG | + | chr1_4:14691764-14691783 | Msa0152140:intron | 20.0% |
| !! | ATAAGAGTTATTGTAACATT+TGG | + | chr1_4:14692007-14692026 | Msa0152140:CDS | 20.0% |
| !!! | ATGCGTATTATTTTTACTTA+TGG | + | chr1_4:14692308-14692327 | Msa0152140:CDS | 20.0% |
| !!! | TTTACCATTTTATTTAGAGA+TGG | - | chr1_4:14692368-14692387 | None:intergenic | 20.0% |
| !! | TACAATGAATGATTACTATA+TGG | - | chr1_4:14692573-14692592 | None:intergenic | 20.0% |
| !! | ATAAGCTATATTGGAAAATT+AGG | + | chr1_4:14693718-14693737 | Msa0152140:three_prime_UTR | 20.0% |
| !!! | CCATTCAAATATGTTTTTGT+TGG | - | chr1_4:14690170-14690189 | None:intergenic | 25.0% |
| ! | CCAACAAAAACATATTTGAA+TGG | + | chr1_4:14690167-14690186 | Msa0152140:CDS | 25.0% |
| ! | AATGGAATGTTTGATCAAAA+AGG | + | chr1_4:14690331-14690350 | Msa0152140:CDS | 25.0% |
| ! | ATGGAATGTTTGATCAAAAA+GGG | + | chr1_4:14690332-14690351 | Msa0152140:CDS | 25.0% |
| !! | TGGGTTCTTTTTATATGATT+TGG | + | chr1_4:14690480-14690499 | Msa0152140:intron | 25.0% |
| !! | GGGTTCTTTTTATATGATTT+GGG | + | chr1_4:14690481-14690500 | Msa0152140:intron | 25.0% |
| !!! | TTTGCTTTGTTTTTCTGAAA+GGG | + | chr1_4:14690504-14690523 | Msa0152140:intron | 25.0% |
| ! | TCAACAAAGTTGTCATTAAA+TGG | - | chr1_4:14690783-14690802 | None:intergenic | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | - | chr1_4:14690809-14690828 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | + | chr1_4:14690808-14690827 | Msa0152140:intron | 25.0% |
| ! | TTCTTATTGGTCAAAAACTA+TGG | + | chr1_4:14690821-14690840 | Msa0152140:intron | 25.0% |
| !!! | AACCATTTTTTGACAACTTT+TGG | - | chr1_4:14690906-14690925 | None:intergenic | 25.0% |
| ! | TAACAATTAGCAAGTTCAAA+TGG | - | chr1_4:14691220-14691239 | None:intergenic | 25.0% |
| !!! | TTTGAACTTGCTAATTGTTA+AGG | + | chr1_4:14691220-14691239 | Msa0152140:intron | 25.0% |
| ! | TAAAATAACCAAAAATGTGG+AGG | + | chr1_4:14691286-14691305 | Msa0152140:intron | 25.0% |
| ! | AAAAATGTGGAGGAAAAAAA+GGG | + | chr1_4:14691296-14691315 | Msa0152140:intron | 25.0% |
| !! | AATGTCTATAGTATTGAACA+TGG | - | chr1_4:14691553-14691572 | None:intergenic | 25.0% |
| ! | AACTATTATACCATGATCAA+TGG | - | chr1_4:14691703-14691722 | None:intergenic | 25.0% |
| ! | AGTTAATGTCAATTTGGAAA+TGG | + | chr1_4:14691871-14691890 | Msa0152140:intron | 25.0% |
| ! | AAGTAAATGACTGTAGAAAA+TGG | - | chr1_4:14692120-14692139 | None:intergenic | 25.0% |
| ! | CAAACCATCTCTAAATAAAA+TGG | + | chr1_4:14692361-14692380 | Msa0152140:CDS | 25.0% |
| ! | ATGGATATAAAGTCATACTT+GGG | - | chr1_4:14692554-14692573 | None:intergenic | 25.0% |
| ! | TATGGATATAAAGTCATACT+TGG | - | chr1_4:14692555-14692574 | None:intergenic | 25.0% |
| ! | GGAAAAAATAAAGCAATTGA+AGG | + | chr1_4:14692712-14692731 | Msa0152140:CDS | 25.0% |
| ! | AAAAATAAAGCAATTGAAGG+AGG | + | chr1_4:14692715-14692734 | Msa0152140:CDS | 25.0% |
| ! | TTGTATTCTTTGCAAAATTG+AGG | - | chr1_4:14692878-14692897 | None:intergenic | 25.0% |
| !!! | GTCGTAAGTTATTGTTATTT+TGG | + | chr1_4:14692962-14692981 | Msa0152140:intron | 25.0% |
| ! | AGAGAACTCAAATGATAATT+CGG | + | chr1_4:14693304-14693323 | Msa0152140:CDS | 25.0% |
| !! | TATTTAGATTTTCCTATTGC+TGG | + | chr1_4:14693329-14693348 | Msa0152140:CDS | 25.0% |
| ! | TCGTACAAATATAAAAAGCA+TGG | - | chr1_4:14693559-14693578 | None:intergenic | 25.0% |
| !!! | ATGCTTTTTATATTTGTACG+AGG | + | chr1_4:14693558-14693577 | Msa0152140:three_prime_UTR | 25.0% |
| !! | TTCTGATGTTCAAATTCTTT+TGG | + | chr1_4:14693860-14693879 | Msa0152140:three_prime_UTR | 25.0% |
| ! | GACATCGTTTCAAAATGTTT+TGG | - | chr1_4:14690130-14690149 | None:intergenic | 30.0% |
| ! | ACAAGCAGTTCTAATAAGAT+TGG | - | chr1_4:14690414-14690433 | None:intergenic | 30.0% |
| ! | GAGACCATTCTCATATTTTA+AGG | + | chr1_4:14690447-14690466 | Msa0152140:CDS | 30.0% |
| !!! | GTTTGCTTTGTTTTTCTGAA+AGG | + | chr1_4:14690503-14690522 | Msa0152140:intron | 30.0% |
| !!! | TTGGTTTTGAATGTTGTGTT+TGG | + | chr1_4:14690527-14690546 | Msa0152140:intron | 30.0% |
| !!! | TGGTTTTGAATGTTGTGTTT+GGG | + | chr1_4:14690528-14690547 | Msa0152140:intron | 30.0% |
| AAACTATACTAGACAGCTTA+TGG | - | chr1_4:14690733-14690752 | None:intergenic | 30.0% | |
| AAAACTATGGAGAGAGAAAA+AGG | + | chr1_4:14690834-14690853 | Msa0152140:intron | 30.0% | |
| GTCCAAAAGTTGTCAAAAAA+TGG | + | chr1_4:14690901-14690920 | Msa0152140:intron | 30.0% | |
| AGCTTACATAAGCACTTATA+TGG | + | chr1_4:14691010-14691029 | Msa0152140:intron | 30.0% | |
| ACGAAACTATTTATCCAAAC+AGG | + | chr1_4:14691058-14691077 | Msa0152140:intron | 30.0% | |
| CGAAACTATTTATCCAAACA+GGG | + | chr1_4:14691059-14691078 | Msa0152140:intron | 30.0% | |
| !! | AAGTAACTTATTTCTGAACG+CGG | + | chr1_4:14691251-14691270 | Msa0152140:intron | 30.0% |
| !!! | CTTTTTTTCCTCCACATTTT+TGG | - | chr1_4:14691297-14691316 | None:intergenic | 30.0% |
| CAAAAATGTGGAGGAAAAAA+AGG | + | chr1_4:14691295-14691314 | Msa0152140:intron | 30.0% | |
| AAAATGTGGAGGAAAAAAAG+GGG | + | chr1_4:14691297-14691316 | Msa0152140:intron | 30.0% | |
| ACAAACATGTGTGAATTGAT+TGG | + | chr1_4:14691450-14691469 | Msa0152140:intron | 30.0% | |
| !!! | GGAATAAACTTTTTAAGACG+CGG | - | chr1_4:14691633-14691652 | None:intergenic | 30.0% |
| CTGTTATATACTCTTATGAC+TGG | - | chr1_4:14691654-14691673 | None:intergenic | 30.0% | |
| AGATGTTACTCACAATCATA+AGG | + | chr1_4:14691739-14691758 | Msa0152140:intron | 30.0% | |
| TTACAAGAAAAAAGAAGGCT+TGG | + | chr1_4:14691769-14691788 | Msa0152140:intron | 30.0% | |
| AATCTACACTAGACTAGATA+TGG | - | chr1_4:14691806-14691825 | None:intergenic | 30.0% | |
| GTCTAGTGTAGATTCATTTA+AGG | + | chr1_4:14691812-14691831 | Msa0152140:intron | 30.0% | |
| TAATGACAATTTCTTGCTTC+TGG | + | chr1_4:14691837-14691856 | Msa0152140:intron | 30.0% | |
| TTGAAACATCAGTGAATTGA+AGG | - | chr1_4:14692197-14692216 | None:intergenic | 30.0% | |
| AAGACTACTGAAAAAGATAG+TGG | + | chr1_4:14692400-14692419 | Msa0152140:CDS | 30.0% | |
| AAAGATGTTCAGTTAAAGCA+AGG | + | chr1_4:14692515-14692534 | Msa0152140:CDS | 30.0% | |
| TGGATATAAAGTCATACTTG+GGG | - | chr1_4:14692553-14692572 | None:intergenic | 30.0% | |
| !! | TGATATTTCTAGCAAAGTTG+TGG | - | chr1_4:14692664-14692683 | None:intergenic | 30.0% |
| AAGATGTTTGCAATGTAAAG+AGG | + | chr1_4:14692896-14692915 | Msa0152140:CDS | 30.0% | |
| AGATGTTTGCAATGTAAAGA+GGG | + | chr1_4:14692897-14692916 | Msa0152140:CDS | 30.0% | |
| CATCAATTTCAGAAGAAACA+TGG | + | chr1_4:14693052-14693071 | Msa0152140:CDS | 30.0% | |
| ATAGTAACAAAGAATCACCA+AGG | + | chr1_4:14693201-14693220 | Msa0152140:CDS | 30.0% | |
| ! | AATTTTGTGGACAATAACAG+AGG | + | chr1_4:14693586-14693605 | Msa0152140:three_prime_UTR | 30.0% |
| ! | TCAGTGGAGTTGTAAAATTT+TGG | + | chr1_4:14693683-14693702 | Msa0152140:three_prime_UTR | 30.0% |
| ATCCATGTCATAAGCTATAT+TGG | + | chr1_4:14693709-14693728 | Msa0152140:three_prime_UTR | 30.0% | |
| TTCCAATATAGCTTATGACA+TGG | - | chr1_4:14693714-14693733 | None:intergenic | 30.0% | |
| !!! | GGAAAATTAGGACTTTTTTG+TGG | + | chr1_4:14693730-14693749 | Msa0152140:three_prime_UTR | 30.0% |
| GGACAAATAGAAAGATACAT+CGG | + | chr1_4:14693751-14693770 | Msa0152140:three_prime_UTR | 30.0% | |
| TAGACAATAATGACAAGCAA+AGG | + | chr1_4:14693817-14693836 | Msa0152140:three_prime_UTR | 30.0% | |
| !!! | AAACTCGTTTTGGTTTGGAT+TGG | - | chr1_4:14690228-14690247 | None:intergenic | 35.0% |
| !!! | TCATCAAACTCGTTTTGGTT+TGG | - | chr1_4:14690233-14690252 | None:intergenic | 35.0% |
| !!! | TGTTGTTGATTCCTCCTTTT+GGG | - | chr1_4:14690257-14690276 | None:intergenic | 35.0% |
| !!! | TTGTTGTTGATTCCTCCTTT+TGG | - | chr1_4:14690258-14690277 | None:intergenic | 35.0% |
| TGGATGAGAAATCTGAAAAG+CGG | - | chr1_4:14690291-14690310 | None:intergenic | 35.0% | |
| ! | CTTTTCAGATTTCTCATCCA+TGG | + | chr1_4:14690291-14690310 | Msa0152140:CDS | 35.0% |
| CCAAATGAGGATTCTCAAAT+GGG | - | chr1_4:14690379-14690398 | None:intergenic | 35.0% | |
| CCATTTGAGAATCCTCATTT+GGG | + | chr1_4:14690377-14690396 | Msa0152140:CDS | 35.0% | |
| ! | AGAACTGCTTGTCTCAATTT+TGG | + | chr1_4:14690422-14690441 | Msa0152140:CDS | 35.0% |
| !!! | CTTTGTTTTTCTGAAAGGGT+TGG | + | chr1_4:14690508-14690527 | Msa0152140:intron | 35.0% |
| AATGTTGTGTTTGGGTATGT+AGG | + | chr1_4:14690536-14690555 | Msa0152140:intron | 35.0% | |
| !! | GTGTGACATTGATAGTGTAA+TGG | + | chr1_4:14690581-14690600 | Msa0152140:intron | 35.0% |
| TCTAAACTTAAAGCCCTGTT+TGG | - | chr1_4:14691075-14691094 | None:intergenic | 35.0% | |
| TTGAACCCACAGATCTATAA+GGG | - | chr1_4:14691177-14691196 | None:intergenic | 35.0% | |
| TTTGAACCCACAGATCTATA+AGG | - | chr1_4:14691178-14691197 | None:intergenic | 35.0% | |
| !! | AACTTGCTAATTGTTAAGGC+TGG | + | chr1_4:14691224-14691243 | Msa0152140:intron | 35.0% |
| ! | ACTTGCTAATTGTTAAGGCT+GGG | + | chr1_4:14691225-14691244 | Msa0152140:intron | 35.0% |
| !! | AGTAACTTATTTCTGAACGC+GGG | + | chr1_4:14691252-14691271 | Msa0152140:intron | 35.0% |
| TCCTTTCTAATACGCATGTA+CGG | - | chr1_4:14691342-14691361 | None:intergenic | 35.0% | |
| ATGCGTATTAGAAAGGATGT+GGG | + | chr1_4:14691345-14691364 | Msa0152140:intron | 35.0% | |
| ! | TGTGTGAATTGATTGGTGAT+AGG | + | chr1_4:14691457-14691476 | Msa0152140:intron | 35.0% |
| TCAAATGCAGAAAACTGCAA+AGG | + | chr1_4:14691593-14691612 | Msa0152140:intron | 35.0% | |
| TTTCTATCTGCCATTGATCA+TGG | + | chr1_4:14691690-14691709 | Msa0152140:intron | 35.0% | |
| !! | ATCTTTTCGAGACAAAAACC+TGG | - | chr1_4:14691987-14692006 | None:intergenic | 35.0% |
| TCCAAGCTTAGATAGAAAAG+TGG | + | chr1_4:14692033-14692052 | Msa0152140:CDS | 35.0% | |
| !! | ACCACTTTTCTATCTAAGCT+TGG | - | chr1_4:14692037-14692056 | None:intergenic | 35.0% |
| ACATCAGTGAATTGAAGGTA+AGG | - | chr1_4:14692192-14692211 | None:intergenic | 35.0% | |
| AATTCACTGATGTTTCAACC+AGG | + | chr1_4:14692199-14692218 | Msa0152140:intron | 35.0% | |
| TCATCTGAATCCTCTAGATA+AGG | + | chr1_4:14692487-14692506 | Msa0152140:CDS | 35.0% | |
| CATCTGAATCCTCTAGATAA+GGG | + | chr1_4:14692488-14692507 | Msa0152140:CDS | 35.0% | |
| !!! | TCTTTTTTGCCCTTATCTAG+AGG | - | chr1_4:14692500-14692519 | None:intergenic | 35.0% |
| ! | TAGTCACTTACCTTTGAAGA+AGG | + | chr1_4:14692742-14692761 | Msa0152140:CDS | 35.0% |
| ! | AGTCACTTACCTTTGAAGAA+GGG | + | chr1_4:14692743-14692762 | Msa0152140:CDS | 35.0% |
| GATGTTTGCAATGTAAAGAG+GGG | + | chr1_4:14692898-14692917 | Msa0152140:CDS | 35.0% | |
| !! | TGTTTTACTCGGTACTGAAA+CGG | + | chr1_4:14693005-14693024 | Msa0152140:intron | 35.0% |
| GTCTTCTATGATCACATTTC+AGG | - | chr1_4:14693082-14693101 | None:intergenic | 35.0% | |
| ATGTGATCATAGAAGACCTA+AGG | + | chr1_4:14693085-14693104 | Msa0152140:CDS | 35.0% | |
| ! | TTTGAAGCATTTGACACCTT+AGG | - | chr1_4:14693104-14693123 | None:intergenic | 35.0% |
| AAGTCGAGATTTGTAGAAGA+AGG | + | chr1_4:14693260-14693279 | Msa0152140:CDS | 35.0% | |
| ! | TTAGATTTTCCTATTGCTGG+AGG | + | chr1_4:14693332-14693351 | Msa0152140:CDS | 35.0% |
| TTATATACTTCTGCCCTTTG+TGG | - | chr1_4:14693377-14693396 | None:intergenic | 35.0% | |
| AGAAGAGCAAAACTCATCAT+CGG | - | chr1_4:14693447-14693466 | None:intergenic | 35.0% | |
| TTGGAAAGGGTAAGAATTCA+AGG | + | chr1_4:14693507-14693526 | Msa0152140:CDS | 35.0% | |
| AGAATTCAAGGTAGAATTCC+AGG | + | chr1_4:14693519-14693538 | Msa0152140:exon | 35.0% | |
| TGAAAGAATATGTTGCACCT+AGG | + | chr1_4:14693652-14693671 | Msa0152140:three_prime_UTR | 35.0% | |
| ! | TGGGTTCATCAAACTCGTTT+TGG | - | chr1_4:14690238-14690257 | None:intergenic | 40.0% |
| ACGAGTTTGATGAACCCAAA+AGG | + | chr1_4:14690240-14690259 | Msa0152140:CDS | 40.0% | |
| AGTTTGATGAACCCAAAAGG+AGG | + | chr1_4:14690243-14690262 | Msa0152140:CDS | 40.0% | |
| GGATGAGAAATCTGAAAAGC+GGG | - | chr1_4:14690290-14690309 | None:intergenic | 40.0% | |
| TCCATTAAGTCTACCCATTC+AGG | - | chr1_4:14690317-14690336 | None:intergenic | 40.0% | |
| CCCATTTGAGAATCCTCATT+TGG | + | chr1_4:14690376-14690395 | Msa0152140:CDS | 40.0% | |
| CCCAAATGAGGATTCTCAAA+TGG | - | chr1_4:14690380-14690399 | None:intergenic | 40.0% | |
| ! | GATTCTTTTGCACCCAAATG+AGG | - | chr1_4:14690392-14690411 | None:intergenic | 40.0% |
| TTTGTCCCCTTATAGATCTG+TGG | + | chr1_4:14691168-14691187 | Msa0152140:intron | 40.0% | |
| TTGTCCCCTTATAGATCTGT+GGG | + | chr1_4:14691169-14691188 | Msa0152140:intron | 40.0% | |
| TGAACCCACAGATCTATAAG+GGG | - | chr1_4:14691176-14691195 | None:intergenic | 40.0% | |
| ATAGATCTGTGGGTTCAAAG+AGG | + | chr1_4:14691179-14691198 | Msa0152140:intron | 40.0% | |
| TAGATCTGTGGGTTCAAAGA+GGG | + | chr1_4:14691180-14691199 | Msa0152140:intron | 40.0% | |
| !! | GTAACTTATTTCTGAACGCG+GGG | + | chr1_4:14691253-14691272 | Msa0152140:intron | 40.0% |
| CCTTTCTAATACGCATGTAC+GGG | - | chr1_4:14691341-14691360 | None:intergenic | 40.0% | |
| CATGCGTATTAGAAAGGATG+TGG | + | chr1_4:14691344-14691363 | Msa0152140:intron | 40.0% | |
| ACACTATGAACATGTCCAAG+CGG | - | chr1_4:14691508-14691527 | None:intergenic | 40.0% | |
| GCAGAAAACTGCAAAGGATT+TGG | + | chr1_4:14691599-14691618 | Msa0152140:intron | 40.0% | |
| GAAAACTGCAAAGGATTTGG+TGG | + | chr1_4:14691602-14691621 | Msa0152140:intron | 40.0% | |
| GATAGAAAAGTGGTCAACTC+AGG | + | chr1_4:14692043-14692062 | Msa0152140:CDS | 40.0% | |
| TGTGTAGCTCGTGTAATTTG+AGG | + | chr1_4:14692222-14692241 | Msa0152140:CDS | 40.0% | |
| GTGTAGCTCGTGTAATTTGA+GGG | + | chr1_4:14692223-14692242 | Msa0152140:CDS | 40.0% | |
| TGTAGCTCGTGTAATTTGAG+GGG | + | chr1_4:14692224-14692243 | Msa0152140:CDS | 40.0% | |
| TATGGACTTGACCCAATCAT+CGG | + | chr1_4:14692326-14692345 | Msa0152140:CDS | 40.0% | |
| TATCCACTGAACCGATGATT+GGG | - | chr1_4:14692340-14692359 | None:intergenic | 40.0% | |
| TTATCCACTGAACCGATGAT+TGG | - | chr1_4:14692341-14692360 | None:intergenic | 40.0% | |
| TGTGATGTCTGGAAAAGTAG+GGG | - | chr1_4:14692447-14692466 | None:intergenic | 40.0% | |
| CTGTGATGTCTGGAAAAGTA+GGG | - | chr1_4:14692448-14692467 | None:intergenic | 40.0% | |
| TCTGTGATGTCTGGAAAAGT+AGG | - | chr1_4:14692449-14692468 | None:intergenic | 40.0% | |
| ! | TACTTTTCCAGACATCACAG+AGG | + | chr1_4:14692448-14692467 | Msa0152140:CDS | 40.0% |
| TTCAGTTAAAGCAAGGCGAT+TGG | + | chr1_4:14692522-14692541 | Msa0152140:CDS | 40.0% | |
| GAAACGGAAACTGTTTGTGT+AGG | + | chr1_4:14693021-14693040 | Msa0152140:intron | 40.0% | |
| ATCTCATCATCATCGGTACT+CGG | - | chr1_4:14693476-14693495 | None:intergenic | 40.0% | |
| CTTACCCTTTCCAAACCATT+CGG | - | chr1_4:14693501-14693520 | None:intergenic | 40.0% | |
| !!! | GTACGAGGCATTGAATTTTG+TGG | + | chr1_4:14693573-14693592 | Msa0152140:three_prime_UTR | 40.0% |
| TTTCTCATCCATGGCCTGAA+TGG | + | chr1_4:14690300-14690319 | Msa0152140:CDS | 45.0% | |
| TTCTCATCCATGGCCTGAAT+GGG | + | chr1_4:14690301-14690320 | Msa0152140:CDS | 45.0% | |
| GCCTGAATGGGTAGACTTAA+TGG | + | chr1_4:14690313-14690332 | Msa0152140:CDS | 45.0% | |
| AAAGGGTCATTTCCATGCAG+AGG | + | chr1_4:14690349-14690368 | Msa0152140:CDS | 45.0% | |
| AAGGGTCATTTCCATGCAGA+GGG | + | chr1_4:14690350-14690369 | Msa0152140:CDS | 45.0% | |
| TGTGTTTGGGTATGTAGGCA+AGG | + | chr1_4:14690541-14690560 | Msa0152140:intron | 45.0% | |
| CCCGTACATGCGTATTAGAA+AGG | + | chr1_4:14691338-14691357 | Msa0152140:intron | 45.0% | |
| GATTATCTACACCATCCGCT+TGG | + | chr1_4:14691490-14691509 | Msa0152140:intron | 45.0% | |
| TATGAACATGTCCAAGCGGA+TGG | - | chr1_4:14691504-14691523 | None:intergenic | 45.0% | |
| !! | TCCAACTGACTTTTCTTGCC+AGG | + | chr1_4:14691966-14691985 | Msa0152140:intron | 45.0% |
| ACCTGGCAAGAAAAGTCAGT+TGG | - | chr1_4:14691970-14691989 | None:intergenic | 45.0% | |
| !! | AGCATATGCAGGCATTGATG+AGG | + | chr1_4:14692078-14692097 | Msa0152140:CDS | 45.0% |
| !! | GCATATGCAGGCATTGATGA+GGG | + | chr1_4:14692079-14692098 | Msa0152140:CDS | 45.0% |
| !! | GGCATTGATGAGGGAAATGT+TGG | + | chr1_4:14692088-14692107 | Msa0152140:intron | 45.0% |
| AATTACACGAGCTACACACC+TGG | - | chr1_4:14692220-14692239 | None:intergenic | 45.0% | |
| GTAGCTCGTGTAATTTGAGG+GGG | + | chr1_4:14692225-14692244 | Msa0152140:CDS | 45.0% | |
| TAGCTCGTGTAATTTGAGGG+GGG | + | chr1_4:14692226-14692245 | Msa0152140:CDS | 45.0% | |
| ! | TACCTTTGAAGAAGGGAGAC+TGG | + | chr1_4:14692750-14692769 | Msa0152140:CDS | 45.0% |
| ATCCAGTCTCCCTTCTTCAA+AGG | - | chr1_4:14692755-14692774 | None:intergenic | 45.0% | |
| GGATTAATGCGACGGTTTGA+AGG | - | chr1_4:14692924-14692943 | None:intergenic | 45.0% | |
| TCAAACCGTCGCATTAATCC+AGG | + | chr1_4:14692924-14692943 | Msa0152140:CDS | 45.0% | |
| CAAACCGTCGCATTAATCCA+GGG | + | chr1_4:14692925-14692944 | Msa0152140:CDS | 45.0% | |
| AAACCGTCGCATTAATCCAG+GGG | + | chr1_4:14692926-14692945 | Msa0152140:CDS | 45.0% | |
| !!! | CAGGTCTGCTTTTTTCACAG+TGG | - | chr1_4:14693160-14693179 | None:intergenic | 45.0% |
| !! | AAAAGCAGACCTGCTTTTGC+AGG | + | chr1_4:14693167-14693186 | Msa0152140:CDS | 45.0% |
| !! | GACCTGCTTTTGCAGGATAT+CGG | + | chr1_4:14693174-14693193 | Msa0152140:CDS | 45.0% |
| AACCGATATCCTGCAAAAGC+AGG | - | chr1_4:14693179-14693198 | None:intergenic | 45.0% | |
| CTCTTTCTTTCTGACGTCCT+TGG | - | chr1_4:14693221-14693240 | None:intergenic | 45.0% | |
| !! | CTAGTCTTACCTCCAGCAAT+AGG | - | chr1_4:14693344-14693363 | None:intergenic | 45.0% |
| TAGCATGTCTGAGCCACAAA+GGG | + | chr1_4:14693361-14693380 | Msa0152140:CDS | 45.0% | |
| AGTCGCCAAATCAGTCCAAA+AGG | + | chr1_4:14693402-14693421 | Msa0152140:CDS | 45.0% | |
| ! | GCATGCCTTTTGGACTGATT+TGG | - | chr1_4:14693410-14693429 | None:intergenic | 45.0% |
| ! | ATCAGTCCAAAAGGCATGCT+TGG | + | chr1_4:14693411-14693430 | Msa0152140:CDS | 45.0% |
| ! | ACTTTGCCAAGCATGCCTTT+TGG | - | chr1_4:14693420-14693439 | None:intergenic | 45.0% |
| !! | GAGTACCGATGATGATGAGA+TGG | + | chr1_4:14693475-14693494 | Msa0152140:CDS | 45.0% |
| TTCGGCCATCTCATCATCAT+CGG | - | chr1_4:14693483-14693502 | None:intergenic | 45.0% | |
| ! | ATGATGATGAGATGGCCGAA+TGG | + | chr1_4:14693483-14693502 | Msa0152140:CDS | 45.0% |
| ! | ATGGCCGAATGGTTTGGAAA+GGG | + | chr1_4:14693494-14693513 | Msa0152140:CDS | 45.0% |
| ATGGTCATAGCGTTTCTTCC+TGG | - | chr1_4:14693540-14693559 | None:intergenic | 45.0% | |
| AAGTCTACCCATTCAGGCCA+TGG | - | chr1_4:14690311-14690330 | None:intergenic | 50.0% | |
| !! | CAAATGGGTTACCCTCTGCA+TGG | - | chr1_4:14690364-14690383 | None:intergenic | 50.0% |
| ! | AAGCGTCTGAGAGCATATGC+AGG | + | chr1_4:14692067-14692086 | Msa0152140:CDS | 50.0% |
| ATTTGAGGGGGGACTGTGAA+AGG | + | chr1_4:14692237-14692256 | Msa0152140:CDS | 50.0% | |
| TTTGAGGGGGGACTGTGAAA+GGG | + | chr1_4:14692238-14692257 | Msa0152140:CDS | 50.0% | |
| ! | GTGAAAGCACGCGAAGATGA+AGG | + | chr1_4:14692266-14692285 | Msa0152140:CDS | 50.0% |
| AAAGCACGCGAAGATGAAGG+TGG | + | chr1_4:14692269-14692288 | Msa0152140:CDS | 50.0% | |
| !! | TGACCCAATCATCGGTTCAG+TGG | + | chr1_4:14692334-14692353 | Msa0152140:CDS | 50.0% |
| ACAGCAACCTCTGTGATGTC+TGG | - | chr1_4:14692458-14692477 | None:intergenic | 50.0% | |
| CACAGAAGTTGTCACAGTGG+AGG | - | chr1_4:14692691-14692710 | None:intergenic | 50.0% | |
| CCTCACAGAAGTTGTCACAG+TGG | - | chr1_4:14692694-14692713 | None:intergenic | 50.0% | |
| CCACTGTGACAACTTCTGTG+AGG | + | chr1_4:14692691-14692710 | Msa0152140:CDS | 50.0% | |
| ACTCCCCTGGATTAATGCGA+CGG | - | chr1_4:14692932-14692951 | None:intergenic | 50.0% | |
| TCGCATTAATCCAGGGGAGT+GGG | + | chr1_4:14692932-14692951 | Msa0152140:CDS | 50.0% | |
| GGACGTCAGAAAGAAAGAGC+AGG | + | chr1_4:14693222-14693241 | Msa0152140:CDS | 50.0% | |
| CTAGCATGTCTGAGCCACAA+AGG | + | chr1_4:14693360-14693379 | Msa0152140:CDS | 50.0% | |
| GATGAGATGGCCGAATGGTT+TGG | + | chr1_4:14693488-14693507 | Msa0152140:CDS | 50.0% | |
| ! | GATGGCCGAATGGTTTGGAA+AGG | + | chr1_4:14693493-14693512 | Msa0152140:CDS | 50.0% |
| GTCGCATTAATCCAGGGGAG+TGG | + | chr1_4:14692931-14692950 | Msa0152140:CDS | 55.0% | |
| CACCTAGGTCAGTGTCTCAG+TGG | + | chr1_4:14693667-14693686 | Msa0152140:three_prime_UTR | 55.0% | |
| CTCCACTGAGACACTGACCT+AGG | - | chr1_4:14693672-14693691 | None:intergenic | 55.0% | |
| GACTCGCATTCCCACTCCCC+TGG | - | chr1_4:14692945-14692964 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 14690122 | 14693904 | 14690122 | ID=Msa0152140;Name=Msa0152140 |
| chr1_4 | mRNA | 14690122 | 14693904 | 14690122 | ID=Msa0152140-mRNA-1;Parent=Msa0152140;Name=Msa0152140-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0.83|1|1|1|6|372|506 |
| chr1_4 | exon | 14690122 | 14690468 | 14690122 | ID=Msa0152140-mRNA-1:exon:5760;Parent=Msa0152140-mRNA-1 |
| chr1_4 | exon | 14691988 | 14692105 | 14691988 | ID=Msa0152140-mRNA-1:exon:5761;Parent=Msa0152140-mRNA-1 |
| chr1_4 | exon | 14692221 | 14692555 | 14692221 | ID=Msa0152140-mRNA-1:exon:5762;Parent=Msa0152140-mRNA-1 |
| chr1_4 | exon | 14692652 | 14692783 | 14692652 | ID=Msa0152140-mRNA-1:exon:5763;Parent=Msa0152140-mRNA-1 |
| chr1_4 | exon | 14692866 | 14692964 | 14692866 | ID=Msa0152140-mRNA-1:exon:5764;Parent=Msa0152140-mRNA-1 |
| chr1_4 | exon | 14693043 | 14693904 | 14693043 | ID=Msa0152140-mRNA-1:exon:5765;Parent=Msa0152140-mRNA-1 |
| chr1_4 | CDS | 14690122 | 14690468 | 14690122 | ID=Msa0152140-mRNA-1:cds;Parent=Msa0152140-mRNA-1 |
| chr1_4 | CDS | 14691988 | 14692105 | 14691988 | ID=Msa0152140-mRNA-1:cds;Parent=Msa0152140-mRNA-1 |
| chr1_4 | CDS | 14692221 | 14692555 | 14692221 | ID=Msa0152140-mRNA-1:cds;Parent=Msa0152140-mRNA-1 |
| chr1_4 | CDS | 14692652 | 14692783 | 14692652 | ID=Msa0152140-mRNA-1:cds;Parent=Msa0152140-mRNA-1 |
| chr1_4 | CDS | 14692866 | 14692964 | 14692866 | ID=Msa0152140-mRNA-1:cds;Parent=Msa0152140-mRNA-1 |
| chr1_4 | CDS | 14693043 | 14693532 | 14693043 | ID=Msa0152140-mRNA-1:cds;Parent=Msa0152140-mRNA-1 |
| chr1_4 | three_prime_UTR | 14693533 | 14693904 | 14693533 | ID=Msa0152140-mRNA-1:three_prime_utr;Parent=Msa0152140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
