AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1271960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1271960 MtrunA17_Chr8g0336391 93.574 249 16 0 155 403 26 274 5.47e-169 484
Msa1271960 MtrunA17_Chr8g0336391 55.814 258 99 3 412 669 39 281 1.23e-91 286
Msa1271960 MtrunA17_Chr8g0336391 60.390 154 59 1 1 154 112 263 1.80e-56 193
Msa1271960 MtrunA17_Chr8g0336381 86.434 258 21 2 412 669 19 262 9.30e-157 452
Msa1271960 MtrunA17_Chr8g0336381 59.766 256 102 1 156 410 7 262 3.00e-106 323
Msa1271960 MtrunA17_Chr8g0336381 50.323 155 74 2 1 154 92 244 6.70e-40 147
Msa1271960 MtrunA17_Chr8g0336411 69.262 244 74 1 156 399 28 270 2.97e-120 359
Msa1271960 MtrunA17_Chr8g0336411 83.117 154 23 1 1 154 113 263 4.40e-83 263
Msa1271960 MtrunA17_Chr8g0336411 50.763 262 105 5 412 669 40 281 8.19e-80 255
Msa1271960 MtrunA17_Chr8g0336401 68.421 247 75 2 156 399 27 273 1.97e-115 347
Msa1271960 MtrunA17_Chr8g0336401 96.753 154 5 0 1 154 113 266 6.51e-100 307
Msa1271960 MtrunA17_Chr8g0336401 50.192 261 112 5 412 669 39 284 1.70e-77 249
Msa1271960 MtrunA17_Chr8g0336441 68.443 244 74 1 156 399 27 267 1.31e-114 345
Msa1271960 MtrunA17_Chr8g0336441 51.163 258 108 4 412 669 39 278 6.25e-79 252
Msa1271960 MtrunA17_Chr8g0336441 71.429 154 39 1 1 154 112 260 3.29e-67 221
Msa1271960 MtrunA17_Chr3g0104871 66.393 244 79 1 156 399 19 259 5.84e-109 330
Msa1271960 MtrunA17_Chr3g0104871 50.000 252 111 3 418 669 34 270 1.75e-77 248
Msa1271960 MtrunA17_Chr3g0104871 65.584 154 48 1 1 154 104 252 4.02e-60 202
Msa1271960 MtrunA17_Chr5g0402871 54.217 249 112 2 152 399 1 248 6.17e-92 286
Msa1271960 MtrunA17_Chr5g0402871 42.085 259 133 5 412 669 17 259 6.71e-58 196
Msa1271960 MtrunA17_Chr5g0402871 49.677 155 74 3 1 154 90 241 1.98e-38 143
Msa1271960 MtrunA17_Chr5g0402851 55.918 245 106 2 156 399 8 251 4.47e-91 283
Msa1271960 MtrunA17_Chr5g0402851 42.424 264 135 5 407 669 15 262 4.66e-58 197
Msa1271960 MtrunA17_Chr5g0402851 49.673 153 73 3 1 152 93 242 8.46e-38 141
Msa1271960 MtrunA17_Chr5g0402841 52.653 245 113 3 156 399 8 250 1.05e-79 254
Msa1271960 MtrunA17_Chr5g0402841 39.313 262 135 6 412 669 20 261 5.76e-50 175
Msa1271960 MtrunA17_Chr5g0402841 48.718 156 69 5 1 152 93 241 1.46e-35 135
Msa1271960 MtrunA17_Chr8g0374141 40.800 250 139 5 156 403 53 295 9.57e-56 192
Msa1271960 MtrunA17_Chr8g0374141 34.066 273 152 8 399 669 56 302 1.86e-36 139
Msa1271960 MtrunA17_Chr8g0374141 33.121 157 92 6 1 154 138 284 1.47e-16 80.9
Msa1271960 MtrunA17_Chr5g0402901 40.000 250 141 5 156 403 12 254 6.20e-53 183
Msa1271960 MtrunA17_Chr5g0402901 35.156 256 141 8 418 669 27 261 3.29e-37 140
Msa1271960 MtrunA17_Chr5g0402901 33.548 155 94 5 1 154 97 243 4.13e-14 73.2
Msa1271960 MtrunA17_Chr5g0402881 39.044 251 144 6 156 404 29 272 1.09e-49 174
Msa1271960 MtrunA17_Chr5g0402881 35.686 255 141 5 418 669 44 278 2.68e-37 140
Msa1271960 MtrunA17_Chr5g0402881 31.818 154 98 4 1 154 114 260 1.57e-12 68.6
Msa1271960 MtrunA17_Chr5g0428471 37.190 242 146 3 156 396 30 266 9.63e-47 167
Msa1271960 MtrunA17_Chr5g0428471 28.571 245 154 6 412 655 42 266 2.09e-21 95.1
Msa1271960 MtrunA17_Chr5g0428471 32.886 149 94 3 3 151 117 259 3.53e-12 67.8
Msa1271960 MtrunA17_Chr3g0128581 35.955 267 164 3 148 413 28 288 1.16e-45 164
Msa1271960 MtrunA17_Chr3g0128581 26.531 245 158 6 412 655 48 271 8.50e-19 87.4
Msa1271960 MtrunA17_Chr7g0219561 37.500 256 152 4 150 403 118 367 5.23e-45 164
Msa1271960 MtrunA17_Chr7g0219561 29.297 256 160 6 412 666 136 371 1.28e-22 100
Msa1271960 MtrunA17_Chr3g0077351 32.847 274 172 5 136 403 71 338 7.56e-39 147
Msa1271960 MtrunA17_Chr3g0077351 29.924 264 149 9 412 666 106 342 4.30e-25 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1271960 AT3G50440.1 43.775 249 135 3 157 403 22 267 2.08e-66 219
Msa1271960 AT3G50440.1 34.615 260 150 6 412 669 33 274 2.93e-39 146
Msa1271960 AT3G50440.1 32.468 154 101 2 1 154 106 256 3.19e-20 91.7
Msa1271960 AT2G23610.1 44.355 248 129 6 156 399 9 251 1.25e-57 196
Msa1271960 AT2G23610.1 34.483 261 149 7 412 669 21 262 2.34e-35 135
Msa1271960 AT2G23610.1 34.868 152 95 3 1 152 95 242 1.47e-17 83.6
Msa1271960 AT2G23620.1 42.510 247 135 5 156 399 9 251 3.43e-57 194
Msa1271960 AT2G23620.1 32.517 286 161 9 392 669 1 262 7.39e-34 130
Msa1271960 AT2G23620.1 35.443 158 86 5 1 152 95 242 2.16e-15 77.4
Msa1271960 AT2G23600.1 42.231 251 138 5 156 403 9 255 2.65e-56 192
Msa1271960 AT2G23600.1 34.211 266 143 8 412 669 21 262 5.44e-37 139
Msa1271960 AT2G23600.1 33.974 156 91 5 1 152 95 242 1.81e-15 77.4
Msa1271960 AT2G23600.2 42.231 251 138 5 156 403 24 270 3.96e-56 192
Msa1271960 AT2G23600.2 34.211 266 143 8 412 669 36 277 1.02e-36 139
Msa1271960 AT2G23600.2 33.974 156 91 5 1 152 110 257 2.15e-15 77.4
Msa1271960 AT2G23580.1 41.870 246 137 4 157 399 9 251 1.15e-52 182
Msa1271960 AT2G23580.1 32.061 262 155 8 412 669 20 262 4.12e-30 120
Msa1271960 AT2G23580.1 36.364 154 89 7 4 154 97 244 1.02e-15 78.2
Msa1271960 AT2G23560.1 41.129 248 133 7 157 399 9 248 8.06e-52 180
Msa1271960 AT2G23560.1 29.730 259 162 7 412 669 20 259 5.37e-28 114
Msa1271960 AT2G23550.1 40.486 247 139 5 157 399 9 251 4.29e-50 176
Msa1271960 AT2G23550.1 31.373 255 155 6 419 669 24 262 3.00e-29 117
Msa1271960 AT2G23550.1 32.258 155 94 6 2 152 95 242 3.84e-11 64.7
Msa1271960 AT2G23550.4 40.486 247 139 5 157 399 16 258 6.23e-50 175
Msa1271960 AT2G23550.4 31.373 255 155 6 419 669 31 269 3.99e-29 117
Msa1271960 AT2G23550.4 32.258 155 94 6 2 152 102 249 4.57e-11 64.7
Msa1271960 AT5G58310.1 35.827 254 153 3 156 403 5 254 3.34e-49 173
Msa1271960 AT5G58310.1 26.236 263 165 6 412 666 17 258 3.30e-21 94.4
Msa1271960 AT2G23590.1 38.132 257 145 5 149 403 20 264 7.85e-49 172
Msa1271960 AT2G23590.1 33.333 255 145 8 412 666 39 268 8.06e-38 142
Msa1271960 AT4G37150.1 36.923 260 158 4 154 411 1 256 1.22e-48 171
Msa1271960 AT4G37150.1 30.502 259 161 6 412 669 15 255 6.12e-30 119
Msa1271960 AT4G37150.1 34.437 151 95 3 2 152 89 235 2.71e-12 67.8
Msa1271960 AT5G10300.1 38.710 248 149 2 156 403 6 250 3.64e-48 170
Msa1271960 AT5G10300.1 31.022 274 169 5 397 669 3 257 9.46e-31 121
Msa1271960 AT4G16690.1 37.302 252 140 4 154 399 10 249 2.00e-47 168
Msa1271960 AT4G16690.1 28.458 253 158 6 412 663 24 254 2.85e-18 85.9
Msa1271960 AT1G33990.1 33.955 268 169 5 139 403 79 341 3.60e-46 167
Msa1271960 AT1G33990.1 30.268 261 152 8 412 666 109 345 8.66e-27 112
Msa1271960 AT1G33990.1 27.742 155 99 4 1 151 182 327 1.77e-11 66.6
Msa1271960 AT3G29770.1 38.824 255 150 3 150 403 132 381 9.37e-46 167
Msa1271960 AT3G29770.1 31.641 256 154 6 412 666 150 385 2.86e-25 108
Msa1271960 AT3G10870.1 35.124 242 154 2 156 396 20 259 1.67e-43 158
Msa1271960 AT3G10870.1 25.714 245 164 5 412 655 32 259 1.65e-18 86.7
Msa1271960 AT1G26360.1 37.097 248 150 3 157 403 190 432 3.35e-43 162
Msa1271960 AT1G26360.1 28.125 256 163 5 412 666 201 436 3.96e-20 94.4
Msa1271960 AT2G23610.2 39.184 245 101 6 156 399 9 206 4.01e-43 155
Msa1271960 AT2G23610.2 41.129 124 68 3 412 534 21 140 1.33e-22 97.1
Msa1271960 AT4G09900.1 32.812 256 165 4 150 403 92 342 1.45e-42 157
Msa1271960 AT4G09900.1 30.769 260 152 9 412 666 110 346 4.28e-24 104
Msa1271960 AT1G69240.1 35.600 250 153 4 157 403 188 432 4.34e-41 155
Msa1271960 AT1G69240.1 26.744 258 166 7 412 666 199 436 1.57e-19 92.4
Msa1271960 AT2G23600.3 44.172 163 87 3 156 315 24 185 5.75e-39 142
Msa1271960 AT2G23600.3 37.500 160 83 5 412 563 36 186 3.16e-24 100
Msa1271960 AT2G23550.2 35.772 246 123 5 157 399 9 222 2.80e-37 139
Msa1271960 AT2G23550.2 27.559 254 137 6 419 669 24 233 2.88e-17 82.0
Msa1271960 AT2G23550.2 32.258 155 94 6 2 152 66 213 2.38e-11 64.7
Msa1271960 AT2G23580.2 39.500 200 109 4 157 353 9 199 1.33e-36 136
Msa1271960 AT2G23580.2 34.416 154 95 4 412 562 20 170 2.44e-19 87.4
Msa1271960 AT2G23550.3 44.099 161 85 3 157 313 16 175 1.60e-36 136
Msa1271960 AT2G23550.3 34.000 150 94 3 419 564 31 179 2.95e-18 84.3
Msa1271960 AT5G10300.2 41.358 162 95 0 156 317 6 167 1.13e-35 134
Msa1271960 AT5G10300.2 40.187 107 61 1 397 503 3 106 3.43e-19 87.0
Msa1271960 AT4G37140.1 49.524 105 53 0 154 258 1 105 6.43e-34 126
Msa1271960 AT4G37140.1 43.478 92 49 1 412 503 15 103 1.36e-21 91.7
Msa1271960 AT4G37140.2 47.826 92 48 0 154 245 1 92 1.27e-28 110
Msa1271960 AT4G37140.2 39.506 81 46 1 412 492 15 92 1.45e-17 79.0
Msa1271960 AT2G23570.1 40.588 170 96 3 232 399 1 167 2.95e-28 112
Msa1271960 AT2G23570.1 32.450 151 99 2 4 154 13 160 5.23e-14 71.2
Msa1271960 AT2G23570.1 29.293 198 113 9 479 669 1 178 4.57e-11 62.8
Msa1271960 AT3G29770.2 49.367 79 40 0 150 228 132 210 1.19e-18 87.0

Find 128 sgRNAs with CRISPR-Local

Find 480 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACCATTGATGTCATTTA+TGG 0.077530 8_3:-5450415 Msa1271960:CDS
TCAACCTTTGATGACATTTA+TGG 0.116749 8_3:-5446808 Msa1271960:CDS
CCTCCAACTGGCTTGTTATT+TGG 0.141072 8_3:-5453759 Msa1271960:CDS
ATCTTGGATGCCATGAATTT+TGG 0.212352 8_3:+5449270 None:intergenic
AGTTCAACATCTTTATAAAT+TGG 0.216142 8_3:+5449070 None:intergenic
TAGAAGGATTAGTTCTTTAA+TGG 0.232720 8_3:-5449352 Msa1271960:CDS
TTAGAGAGGATCTGCAATTA+TGG 0.262915 8_3:-5453046 Msa1271960:CDS
AGGGTGGAACTAAGCTTCTT+TGG 0.269816 8_3:+5448866 None:intergenic
TAAATCAGCATCGCTCAAAA+AGG 0.284700 8_3:+5445559 None:intergenic
TACTCTTCCATTTCTATCAT+TGG 0.292250 8_3:+5449024 None:intergenic
ACAAGAATTAACTTCTCATT+TGG 0.313936 8_3:+5450381 None:intergenic
CAGATTGGATGCCAAGAGTT+TGG 0.316731 8_3:+5453734 None:intergenic
ATCACTTTCACCTCATCATA+TGG 0.319123 8_3:+5453005 None:intergenic
TGAATCTCTTGTACTTGTAT+TGG 0.323609 8_3:+5450456 None:intergenic
TTGGAAATAATGAAGACTTT+TGG 0.329148 8_3:+5453083 None:intergenic
ACAATTGAATTGGCTGGTTC+AGG 0.332244 8_3:-5450486 Msa1271960:CDS
TGAACTTCTTGCATCTGCTT+TGG 0.342274 8_3:+5446849 None:intergenic
TAATGTTACAACAATTGAAT+TGG 0.361515 8_3:-5450496 Msa1271960:CDS
AATGAGAAGTTAATTCTTGT+TGG 0.365344 8_3:-5450378 Msa1271960:CDS
AAGCACTTTGTGTTGATTCA+TGG 0.366129 8_3:-5446974 Msa1271960:CDS
CAAACCTGCAACTGCTAGAT+TGG 0.368595 8_3:-5449298 Msa1271960:CDS
TGAGAAGGTGGAAGTGATAG+AGG 0.372293 8_3:-5448918 Msa1271960:CDS
TCTAATGAAAATGTCTCCTT+TGG 0.376102 8_3:+5453064 None:intergenic
CTAGCAGTTGCAGGTTTGTT+GGG 0.377021 8_3:+5449303 None:intergenic
AAGCCAGTTGGAGGACTGTT+TGG 0.386544 8_3:+5453768 None:intergenic
TGATGAGGTGAAAGTGATAA+AGG 0.388919 8_3:-5453000 Msa1271960:CDS
TACCCTTCCATTCCTCTGCT+TGG 0.389684 8_3:+5453106 None:intergenic
CCATCTTGTAGCAAGCTAGA+AGG 0.392296 8_3:-5449368 Msa1271960:intron
TCTAGCAGTTGCAGGTTTGT+TGG 0.395041 8_3:+5449302 None:intergenic
TGGTGCATGGTGTTGGTATA+AGG 0.400591 8_3:-5450547 Msa1271960:CDS
ATTACCTCTTGAAGAACAAC+AGG 0.404228 8_3:+5450246 None:intergenic
ATTCTTGTTGGTCATAGTCT+TGG 0.409610 8_3:-5450366 Msa1271960:CDS
CAAATTCGATTTCTATATGC+AGG 0.415716 8_3:-5445626 Msa1271960:CDS
ATGGTTACCAATGATAGAAA+TGG 0.421786 8_3:-5449031 Msa1271960:CDS
ATCACTTCCACCTTCTCAAA+TGG 0.422893 8_3:+5448923 None:intergenic
GAGAGGATTGGAGCTTTGTC+TGG 0.423859 8_3:+5445807 None:intergenic
CCAACCAATCTAGCAGTTGC+AGG 0.423936 8_3:+5449294 None:intergenic
AGATGTTGAACTATTGTTGA+AGG 0.427375 8_3:-5449059 Msa1271960:CDS
GTTCTTGTTGGTCGTAGTCT+TGG 0.427378 8_3:-5446759 Msa1271960:CDS
TTACCTGAGATGGTGATAAC+TGG 0.434164 8_3:+5445748 None:intergenic
ATTGGTTGGACCAAAATTCA+TGG 0.434970 8_3:-5449280 Msa1271960:CDS
TTTGACACTTGCTTTATCTC+TGG 0.437434 8_3:-5445602 Msa1271960:CDS
CTTGTTGGTCATAGTCTTGG+TGG 0.441219 8_3:-5450363 Msa1271960:CDS
CTTGTTGGTCGTAGTCTTGG+AGG 0.446712 8_3:-5446756 Msa1271960:CDS
GAGGAGAAAGTAGTTCTTGT+TGG 0.455636 8_3:-5446771 Msa1271960:CDS
GTTACAACAATTGAATTGGC+TGG 0.460288 8_3:-5450492 Msa1271960:CDS
AGGCGATAATTGATACAGAT+TGG 0.460726 8_3:+5453719 None:intergenic
TGGTGATAACTGGTACATTC+TGG 0.466524 8_3:+5445758 None:intergenic
AGAATTAACTTCTCATTTGG+AGG 0.467244 8_3:+5450384 None:intergenic
CATGCGCAGGATTTGACACT+TGG 0.467706 8_3:-5453197 Msa1271960:intron
GACAAAATTTCATCATTGAC+GGG 0.468240 8_3:-5445830 Msa1271960:CDS
GTTATTTGGATCCAAACTCT+TGG 0.471433 8_3:-5453745 Msa1271960:CDS
GAGAAGAATAGGCTCAGCTT+TGG 0.471989 8_3:-5445856 Msa1271960:CDS
GAAGTAAACTTGTAAAATTG+AGG 0.474859 8_3:+5454306 None:intergenic
GATCGAGGGTTCAGATCATA+TGG 0.477216 8_3:-5445393 Msa1271960:CDS
CCTGCAACTGCTAGATTGGT+TGG 0.480634 8_3:-5449294 Msa1271960:CDS
TTGTTGGTCATAGTCTTGGT+GGG 0.483396 8_3:-5450362 Msa1271960:CDS
ACATCTTTATAAATTGGTAC+AGG 0.484656 8_3:+5449076 None:intergenic
GGACCAAACAGTCCTCCAAC+TGG 0.486769 8_3:-5453771 Msa1271960:CDS
ATGTAGCGAAGGAGAAGAAT+AGG 0.490240 8_3:-5445867 Msa1271960:intron
CACTTGCTTTATCTCTGGTA+CGG 0.492239 8_3:-5445597 Msa1271960:CDS
GTTGTCTGTGTCTATTGCTA+TGG 0.493669 8_3:-5446733 Msa1271960:CDS
AGACAAAATTTCATCATTGA+CGG 0.494233 8_3:-5445831 Msa1271960:CDS
TTGATTCATGGAGGCATCCA+TGG 0.503684 8_3:-5446962 Msa1271960:CDS
TTATGGATAATTGAGAGAAC+TGG 0.510143 8_3:-5453029 Msa1271960:CDS
TAAATGTCATCAAAGGTTGA+TGG 0.511909 8_3:+5446811 None:intergenic
GCAACTATGCTTAAATCAGC+TGG 0.513884 8_3:-5450522 Msa1271960:CDS
GGTGTCTACATCTGTTGCTA+TGG 0.514872 8_3:-5450340 Msa1271960:CDS
AAATTGGTACAGGTCTCACT+AGG 0.515680 8_3:+5449086 None:intergenic
GAATGGATAATTGAGACAAC+CGG 0.517534 8_3:-5445437 Msa1271960:CDS
GTCTCACTAGGGACAATGCA+AGG 0.519627 8_3:+5449098 None:intergenic
GTACCAGTTATCACCATCTC+AGG 0.520634 8_3:-5445751 Msa1271960:intron
AAAGTCTTCATTATTTCCAA+AGG 0.521901 8_3:-5453080 Msa1271960:CDS
AGAGTTACCAAGCAGAGGAA+TGG 0.523198 8_3:-5453113 Msa1271960:CDS
AGTCCGTCAGACGAGAGGAT+TGG 0.527944 8_3:+5445795 None:intergenic
CCAAATAACAAGCCAGTTGG+AGG 0.528964 8_3:+5453759 None:intergenic
TGGTGATAATTGATACATCT+TGG 0.534510 8_3:+5449254 None:intergenic
TCGTCATTAAAGATAGGATG+TGG 0.534576 8_3:+5453158 None:intergenic
AAGTGGTCCATTTGAGAAGG+TGG 0.534667 8_3:-5448930 Msa1271960:CDS
GCAACTGAACTAAAATCAGC+TGG 0.536127 8_3:-5446915 Msa1271960:CDS
TTACCAAGCAGAGGAATGGA+AGG 0.538666 8_3:-5453109 Msa1271960:CDS
TATGGAGTCACTTCCTTGTG+AGG 0.541105 8_3:-5446790 Msa1271960:CDS
CTGATTCATGGTGGAAGCCA+TGG 0.542667 8_3:-5450567 Msa1271960:CDS
ATACCCTGTTGTTCTTCAAG+AGG 0.545354 8_3:-5450250 Msa1271960:intron
TTGTTGGTCGTAGTCTTGGA+GGG 0.546131 8_3:-5446755 Msa1271960:CDS
GCATCCATGGTGCATGGTGT+TGG 0.551656 8_3:-5446949 Msa1271960:CDS
TTTCACTTTAGCATATGGAC+CGG 0.551824 8_3:+5445418 None:intergenic
GTATCAATTATCGCCTAATG+AGG 0.552044 8_3:-5453712 Msa1271960:intron
CCACAGTTAGTCTTCTCTGA+TGG 0.553719 8_3:-5453792 Msa1271960:CDS
GATTCCATAAATGACATCAA+TGG 0.557899 8_3:+5450411 None:intergenic
GAAGCCATGGTGCATGGTGT+TGG 0.558171 8_3:-5450554 Msa1271960:CDS
GATCCAAATAACAAGCCAGT+TGG 0.568650 8_3:+5453756 None:intergenic
ACTATTGTTGAAGGAAACAA+TGG 0.570002 8_3:-5449050 Msa1271960:CDS
TTTGACACTTGGATCGTCGT+TGG 0.570218 8_3:-5453186 Msa1271960:CDS
AACATATACTCCACCTCAGA+TGG 0.576227 8_3:+5449234 None:intergenic
GACTCCATAAATGTCATCAA+AGG 0.577498 8_3:+5446804 None:intergenic
TGTTGGTCATAGTCTTGGTG+GGG 0.581014 8_3:-5450361 Msa1271960:CDS
GCTCCAATCCTCTCGTCTGA+CGG 0.581690 8_3:-5445798 Msa1271960:CDS
CACTTTGTGTTGATTCATGG+AGG 0.589315 8_3:-5446971 Msa1271960:CDS
GAAGAACAACAGGGTATGAG+AGG 0.589704 8_3:+5450256 None:intergenic
AAACAAGAGTTACCAAGCAG+AGG 0.595363 8_3:-5453118 Msa1271960:CDS
TGCTAAAGTGAAAATGATCG+AGG 0.599047 8_3:-5445408 Msa1271960:CDS
GAGAAGTGGTCCATTTGAGA+AGG 0.599756 8_3:-5448933 Msa1271960:CDS
ACTGTTACAAATGAAAACAA+TGG 0.604853 8_3:-5445521 Msa1271960:CDS
AATCGAGTCCGTCAGACGAG+AGG 0.609179 8_3:+5445790 None:intergenic
AAGTGATAATTTGATAACAG+AGG 0.620511 8_3:-5448978 Msa1271960:CDS
GAAGAAAAGCACGATAAGTG+AGG 0.624099 8_3:+5446649 None:intergenic
TAAAGTCACAGCACTAGACA+TGG 0.625449 8_3:-5446889 Msa1271960:CDS
GATAGAGGATTCTGATCACA+TGG 0.632772 8_3:-5448903 Msa1271960:CDS
CTGTGGTGGATCTTGTTGAG+TGG 0.634018 8_3:+5453809 None:intergenic
GCTAAAGTGAAAATGATCGA+GGG 0.635853 8_3:-5445407 Msa1271960:CDS
AGAACTACTTTCTCCTCACA+AGG 0.635958 8_3:+5446777 None:intergenic
TACAAATGAAAACAATGGAA+TGG 0.636369 8_3:-5445516 Msa1271960:CDS
GCACTAGACATGGCTGCTTG+TGG 0.636797 8_3:-5446879 Msa1271960:CDS
AATTGGTACAGGTCTCACTA+GGG 0.640202 8_3:+5449087 None:intergenic
TATACCAACACCATGCACCA+TGG 0.641770 8_3:+5446945 None:intergenic
ATGGTGGAAGCCATGGTGCA+TGG 0.643508 8_3:-5450560 Msa1271960:CDS
TCAGAGAAGACTAACTGTGG+TGG 0.643713 8_3:+5453795 None:intergenic
TCTCACTAGGGACAATGCAA+GGG 0.646794 8_3:+5449099 None:intergenic
ATGGAGGCATCCATGGTGCA+TGG 0.656739 8_3:-5446955 Msa1271960:CDS
GATAAAGGATTCAGATCACA+TGG 0.658047 8_3:-5452985 Msa1271960:CDS
TATACCAACACCATGCACCA+TGG 0.667607 8_3:+5450550 None:intergenic
GTATCAATTATCACCATCTG+AGG 0.675132 8_3:-5449247 Msa1271960:intron
CCATCAGAGAAGACTAACTG+TGG 0.690147 8_3:+5453792 None:intergenic
TACCAAGCAGAGGAATGGAA+GGG 0.694878 8_3:-5453108 Msa1271960:CDS
ATGTTGATGATTGAGAGAAG+TGG 0.696124 8_3:-5448947 Msa1271960:CDS
GAGAACTGGTCCATATGATG+AGG 0.761857 8_3:-5453015 Msa1271960:CDS
TTACCTCTTGAAGAACAACA+GGG 0.771294 8_3:+5450247 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTATATTAATAAAAATT+AGG - chr8_3:5445484-5445503 Msa1271960:CDS 0.0%
!!! AAAATTTAAAATTAAAATAA+TGG + chr8_3:5448709-5448728 None:intergenic 0.0%
!!! ATATATAATTTTATTAATTT+GGG + chr8_3:5448810-5448829 None:intergenic 0.0%
!!! TATATATAATTTTATTAATT+TGG + chr8_3:5448811-5448830 None:intergenic 0.0%
!! TATAATAATAATAATATATA+AGG - chr8_3:5449868-5449887 Msa1271960:intron 0.0%
!! AATATAAATATATATAACCA+TGG + chr8_3:5445474-5445493 None:intergenic 10.0%
!! CATTCAAAATTAAAATTATT+AGG - chr8_3:5445646-5445665 Msa1271960:intron 10.0%
!!! ATTTTAATAAAAACTATTGA+AGG - chr8_3:5446945-5446964 Msa1271960:CDS 10.0%
!!! TTTTAATAAAAACTATTGAA+GGG - chr8_3:5446946-5446965 Msa1271960:CDS 10.0%
!! AATAACTTCATTAAAAAAAT+AGG - chr8_3:5447826-5447845 Msa1271960:intron 10.0%
!!! ATACAAAAAAAATCTAATTT+TGG + chr8_3:5448466-5448485 None:intergenic 10.0%
!!! TATGAATAATTTAATTTTGT+GGG + chr8_3:5449522-5449541 None:intergenic 10.0%
!!! TTATGAATAATTTAATTTTG+TGG + chr8_3:5449523-5449542 None:intergenic 10.0%
!!! TGTTATTTTTAATTTAATTG+AGG + chr8_3:5449568-5449587 None:intergenic 10.0%
!!! CTTATATTTTTTTTTTTTTG+TGG + chr8_3:5449983-5450002 None:intergenic 10.0%
!! CACAAAAAAAAAAAAATATA+AGG - chr8_3:5449981-5450000 Msa1271960:intron 10.0%
!! CTTATATATTATATCATATA+TGG + chr8_3:5450112-5450131 None:intergenic 10.0%
!! CATATATGATATAATATATA+AGG - chr8_3:5450110-5450129 Msa1271960:intron 10.0%
!! CTATTATTACATTAAAATTA+AGG + chr8_3:5450888-5450907 None:intergenic 10.0%
!! TTTAATGTAATAATAGTATA+TGG - chr8_3:5450892-5450911 Msa1271960:intron 10.0%
!! TTAATGTAATAATAGTATAT+GGG - chr8_3:5450893-5450912 Msa1271960:intron 10.0%
!! TAAAACCTAAATATATATAT+AGG - chr8_3:5452151-5452170 Msa1271960:intron 10.0%
!!! TGATATTTAAGATTTTAAAA+TGG - chr8_3:5453430-5453449 Msa1271960:intron 10.0%
!!! GATATTTAAGATTTTAAAAT+GGG - chr8_3:5453431-5453450 Msa1271960:intron 10.0%
!! GAATGTTAATTTCTAATAAA+AGG + chr8_3:5445631-5445650 None:intergenic 15.0%
!!! AAAATCCATTAAAGTATTTT+AGG + chr8_3:5445764-5445783 None:intergenic 15.0%
!!! AATTATTTTAACAAAAGTCA+AGG + chr8_3:5446219-5446238 None:intergenic 15.0%
!!! TTTGTTAAAATAATTTGTCT+AGG - chr8_3:5446224-5446243 Msa1271960:intron 15.0%
!!! TTAGACTTTTTTTTTTTTGA+GGG - chr8_3:5446286-5446305 Msa1271960:intron 15.0%
!! TTAAACTTCAAATTATTAGA+AGG - chr8_3:5446341-5446360 Msa1271960:intron 15.0%
!! TAATATAATATGGTATGTTA+AGG + chr8_3:5446436-5446455 None:intergenic 15.0%
!!! AATATTAGATATGCTTTTAT+TGG - chr8_3:5446794-5446813 Msa1271960:CDS 15.0%
!! CAAACTAATAATAAACATTA+AGG + chr8_3:5446844-5446863 None:intergenic 15.0%
!! TTAAAAATAAATGGAGAATA+TGG - chr8_3:5446890-5446909 Msa1271960:CDS 15.0%
!! AAAATAGGATATTTATCATT+AGG - chr8_3:5447841-5447860 Msa1271960:intron 15.0%
!! TATAAGATCTCTATTATATT+CGG + chr8_3:5447946-5447965 None:intergenic 15.0%
!! AAATTATCCTTCATTAAATA+TGG - chr8_3:5448018-5448037 Msa1271960:intron 15.0%
!! AATAGAAATAAATGTCTTAA+AGG + chr8_3:5448538-5448557 None:intergenic 15.0%
!!! CTATTAATCATTCATTTTTT+AGG + chr8_3:5448892-5448911 None:intergenic 15.0%
!! AAATTTATAAGATGATGAAA+AGG - chr8_3:5449037-5449056 Msa1271960:CDS 15.0%
!! AATTTATAAGATGATGAAAA+GGG - chr8_3:5449038-5449057 Msa1271960:CDS 15.0%
!! TACATATATATTACTTTGTT+GGG - chr8_3:5449619-5449638 Msa1271960:intron 15.0%
!!! TTAAATATAGTTTATCGTTT+TGG - chr8_3:5449642-5449661 Msa1271960:intron 15.0%
!!! TAAATATAGTTTATCGTTTT+GGG - chr8_3:5449643-5449662 Msa1271960:intron 15.0%
!!! TATATACCTTTTGAATTTTA+TGG - chr8_3:5449673-5449692 Msa1271960:intron 15.0%
!!! AACATATTTAATCCTTTTTT+AGG - chr8_3:5449770-5449789 Msa1271960:intron 15.0%
!!! TATTTTTTTTTTTTTTGTGG+TGG + chr8_3:5449923-5449942 None:intergenic 15.0%
!!! ATATTTTTTTTTTTTTGTGG+TGG + chr8_3:5449980-5449999 None:intergenic 15.0%
!!! AACTCTTTATTTTTTTTTTG+TGG + chr8_3:5450039-5450058 None:intergenic 15.0%
!!! TTAATCAAAGTTTAAAATTG+TGG + chr8_3:5450062-5450081 None:intergenic 15.0%
!!! ACTCTTTATTTTTTTTTTTG+TGG + chr8_3:5450168-5450187 None:intergenic 15.0%
!!! TTAATCAAAGTTTAAAATTG+TGG + chr8_3:5450062-5450081 None:intergenic 15.0%
!! AAAGTAAAAATATTGAGAAT+GGG + chr8_3:5450226-5450245 None:intergenic 15.0%
!! AAAAGTAAAAATATTGAGAA+TGG + chr8_3:5450227-5450246 None:intergenic 15.0%
!!! TCTCAATATTTTTACTTTTT+AGG - chr8_3:5450228-5450247 Msa1271960:intron 15.0%
!!! ATAAAAATTTAACTTTGACT+TGG - chr8_3:5450500-5450519 Msa1271960:CDS 15.0%
!!! TTGCTTATGATAAAAATTTT+AGG + chr8_3:5450704-5450723 None:intergenic 15.0%
!! ACAATTATTATATCTCAAAT+TGG + chr8_3:5451400-5451419 None:intergenic 15.0%
!! TGTTTCCTATATATATATTT+AGG + chr8_3:5452159-5452178 None:intergenic 15.0%
!!! AACTAGTTTTATATTAATGT+GGG - chr8_3:5452251-5452270 Msa1271960:intron 15.0%
!! CCAAAATAAAATAAAATGAT+TGG + chr8_3:5452352-5452371 None:intergenic 15.0%
!!! CCAATCATTTTATTTTATTT+TGG - chr8_3:5452349-5452368 Msa1271960:intron 15.0%
!!! AAAATTTAGCCAAATTTTTT+CGG - chr8_3:5452452-5452471 Msa1271960:intron 15.0%
!!! TAATTTTTTTTCCTTACAAA+TGG + chr8_3:5453183-5453202 None:intergenic 15.0%
!! ATTTGTAAGGAAAAAAAATT+AGG - chr8_3:5453182-5453201 Msa1271960:CDS 15.0%
!!! TTAAATATCATAATTTTCGA+AGG + chr8_3:5453420-5453439 None:intergenic 15.0%
!! CAAAACAAAAAAAAAAATAG+TGG - chr8_3:5453550-5453569 Msa1271960:intron 15.0%
!! GAGAAAATATTGAAATTATT+TGG - chr8_3:5453614-5453633 Msa1271960:intron 15.0%
!! TCAAAATACATAATATGAAT+TGG + chr8_3:5453990-5454009 None:intergenic 15.0%
!! AGTTAATGAAGATGTTAAAA+AGG + chr8_3:5445681-5445700 None:intergenic 20.0%
!! TCCATAAAAAAGAATAAACT+CGG - chr8_3:5445722-5445741 Msa1271960:intron 20.0%
!! GAAAACCTAAAATACTTTAA+TGG - chr8_3:5445756-5445775 Msa1271960:CDS 20.0%
!!! CTGAGTTTTAATTTTAATTG+TGG - chr8_3:5445797-5445816 Msa1271960:CDS 20.0%
!! TCTTGATTGAAAATTTGAAA+AGG - chr8_3:5446026-5446045 Msa1271960:intron 20.0%
!!! GTTAGACTTTTTTTTTTTTG+AGG - chr8_3:5446285-5446304 Msa1271960:intron 20.0%
!!! CAAATAAGTGTATAGATTTT+TGG + chr8_3:5446394-5446413 None:intergenic 20.0%
!!! ATATGCTTTTATTGGTTTTT+TGG - chr8_3:5446802-5446821 Msa1271960:CDS 20.0%
!!! AATGGATTAAATTTTTGAGT+TGG + chr8_3:5447319-5447338 None:intergenic 20.0%
!!! CATGAAATTCTTTTACATAA+TGG + chr8_3:5447337-5447356 None:intergenic 20.0%
!! TAGGAATCAATAAATAAAAG+TGG + chr8_3:5447409-5447428 None:intergenic 20.0%
!! CAATTAGTTATACAAATGTT+AGG + chr8_3:5447428-5447447 None:intergenic 20.0%
!! TAGACTCAATATTTGAATAT+TGG - chr8_3:5447638-5447657 Msa1271960:intron 20.0%
!! AAACATCATTAATGATTCAT+TGG - chr8_3:5448143-5448162 Msa1271960:intron 20.0%
!! CTTAAAACGACTTATAATTT+AGG - chr8_3:5448203-5448222 Msa1271960:intron 20.0%
!! ATTATTGATAGAAATGAGTT+AGG - chr8_3:5448300-5448319 Msa1271960:intron 20.0%
!! ATCAATTTACAGAGAAAATA+TGG + chr8_3:5448838-5448857 None:intergenic 20.0%
!! CTATGAAAATAAATTCTTCT+TGG + chr8_3:5448923-5448942 None:intergenic 20.0%
!! TAATGTTACAACAATTGAAT+TGG - chr8_3:5449206-5449225 Msa1271960:intron 20.0%
!! CTACATATATATTACTTTGT+TGG - chr8_3:5449618-5449637 Msa1271960:intron 20.0%
!!! CCATTTTTAAAATATGTCAT+TGG + chr8_3:5449703-5449722 None:intergenic 20.0%
!!! CCAATGACATATTTTAAAAA+TGG - chr8_3:5449700-5449719 Msa1271960:intron 20.0%
!!! TGAATTTTAAAAATTGAGTG+AGG - chr8_3:5449741-5449760 Msa1271960:intron 20.0%
!!! GAATTTTAAAAATTGAGTGA+GGG - chr8_3:5449742-5449761 Msa1271960:intron 20.0%
!! TTATAAACAACTCCTAAAAA+AGG + chr8_3:5449785-5449804 None:intergenic 20.0%
!!! TCTTTATTTTTTTTTTGTGG+TGG + chr8_3:5450036-5450055 None:intergenic 20.0%
!!! CTTTATTTTTTTTTTTGTGG+TGG + chr8_3:5450165-5450184 None:intergenic 20.0%
!! AGTTCAACATCTTTATAAAT+TGG + chr8_3:5450635-5450654 None:intergenic 20.0%
!!! CTTTTTTGCAATCTTTAAAA+GGG + chr8_3:5450858-5450877 None:intergenic 20.0%
!!! ACTTTTTTGCAATCTTTAAA+AGG + chr8_3:5450859-5450878 None:intergenic 20.0%
!! AAAGAATGAAGTAAAAACAA+CGG + chr8_3:5450957-5450976 None:intergenic 20.0%
!!! ATTCTTTTGTTTCAACATAA+AGG - chr8_3:5450970-5450989 Msa1271960:intron 20.0%
!! TTGAGATATAATAATTGTGT+TGG - chr8_3:5451402-5451421 Msa1271960:intron 20.0%
!! CAAATTAAAATAACAAGAGA+AGG + chr8_3:5451463-5451482 None:intergenic 20.0%
!!! AAAAAACTATTGTTGGTTTT+CGG + chr8_3:5451641-5451660 None:intergenic 20.0%
!! AAACCAAATTATTCTACATA+TGG + chr8_3:5451719-5451738 None:intergenic 20.0%
!! ATATGTAGAATAATTTGGTT+TGG - chr8_3:5451718-5451737 Msa1271960:intron 20.0%
!! TGTATTTGTCTTTCAAAATA+TGG - chr8_3:5451811-5451830 Msa1271960:intron 20.0%
!! AAAAAACTTTCACAATTGAA+TGG - chr8_3:5451915-5451934 Msa1271960:intron 20.0%
!! CGTCTTTATAAGAAATATTT+AGG - chr8_3:5452126-5452145 Msa1271960:intron 20.0%
!!! CAACTAGTTTTATATTAATG+TGG - chr8_3:5452250-5452269 Msa1271960:intron 20.0%
!!! ACTAGTTTTATATTAATGTG+GGG - chr8_3:5452252-5452271 Msa1271960:intron 20.0%
!! TAGTTGAACAATAAAAAAAG+AGG + chr8_3:5452294-5452313 None:intergenic 20.0%
!!! ATGATTCATTCTTTTTCATA+TGG - chr8_3:5452324-5452343 Msa1271960:intron 20.0%
!!! TGATTCATTCTTTTTCATAT+GGG - chr8_3:5452325-5452344 Msa1271960:intron 20.0%
!! GTACAAAAAAAACTACTTTA+TGG + chr8_3:5452608-5452627 None:intergenic 20.0%
!!! AGAAATTTGGTCTTATATAA+TGG + chr8_3:5452654-5452673 None:intergenic 20.0%
!!! TATATTCTGGCATTATATTT+TGG + chr8_3:5453316-5453335 None:intergenic 20.0%
!! AGATTAGACAATTTATATTC+TGG + chr8_3:5453329-5453348 None:intergenic 20.0%
!! TTGAAAAATAAGAATGATTG+AGG - chr8_3:5453519-5453538 Msa1271960:intron 20.0%
!!! TTCAATATTTTCTCAAACTA+TGG + chr8_3:5453608-5453627 None:intergenic 20.0%
!! AAAAATATTCATCAAATCAC+GGG + chr8_3:5453803-5453822 None:intergenic 20.0%
!! CAAAAATATTCATCAAATCA+CGG + chr8_3:5453804-5453823 None:intergenic 20.0%
!!! AAACAAAAGATTTTCAAGAA+TGG - chr8_3:5454248-5454267 Msa1271960:intron 20.0%
! GAAGTAAACTTGTAAAATTG+AGG + chr8_3:5445399-5445418 None:intergenic 25.0%
!! TTTTACAAGTTTACTTCAAG+AGG - chr8_3:5445402-5445421 Msa1271960:CDS 25.0%
! GTAAATAGTATTAGTAACCA+TGG - chr8_3:5445454-5445473 Msa1271960:CDS 25.0%
!!! TCCGAGTTTATTCTTTTTTA+TGG + chr8_3:5445726-5445745 None:intergenic 25.0%
!!! GTATTTTAGGTTTTCTTCAT+GGG + chr8_3:5445751-5445770 None:intergenic 25.0%
!!! AGTATTTTAGGTTTTCTTCA+TGG + chr8_3:5445752-5445771 None:intergenic 25.0%
!!! GCAATTTTTTTTACCTCATT+AGG + chr8_3:5446006-5446025 None:intergenic 25.0%
!! GGTTGATTCAATAAATCTAA+AGG + chr8_3:5446198-5446217 None:intergenic 25.0%
!! AGTTTTTCGTCATTAAAGAT+AGG + chr8_3:5446553-5446572 None:intergenic 25.0%
! TATCTTTAATGACGAAAAAC+TGG - chr8_3:5446552-5446571 Msa1271960:intron 25.0%
!! TTGGAAATAATGAAGACTTT+TGG + chr8_3:5446622-5446641 None:intergenic 25.0%
! AAAGTCTTCATTATTTCCAA+AGG - chr8_3:5446622-5446641 Msa1271960:intron 25.0%
! TTATTGAGCTGATATGATTT+AGG - chr8_3:5447004-5447023 Msa1271960:intron 25.0%
! AATGATCATTCGGAAAAAAA+AGG + chr8_3:5447384-5447403 None:intergenic 25.0%
! TGTTCAGAGAAATCTTAATT+AGG - chr8_3:5447696-5447715 Msa1271960:intron 25.0%
! ATAGACAAAGGAAAAAGAAT+TGG - chr8_3:5447902-5447921 Msa1271960:intron 25.0%
! TAGACAAAGGAAAAAGAATT+GGG - chr8_3:5447903-5447922 Msa1271960:intron 25.0%
! TCCTTCATTAAATATGGTAT+AGG - chr8_3:5448024-5448043 Msa1271960:intron 25.0%
! CCTTCATTAAATATGGTATA+GGG - chr8_3:5448025-5448044 Msa1271960:intron 25.0%
!!! GTATAGGGAAGTTTTTTTTA+GGG - chr8_3:5448040-5448059 Msa1271960:intron 25.0%
!!! TTTTTTTAGGGATATGGTAT+AGG - chr8_3:5448052-5448071 Msa1271960:intron 25.0%
!!! TTTTTTAGGGATATGGTATA+GGG - chr8_3:5448053-5448072 Msa1271960:intron 25.0%
! GATTCATTGGCATTATAAAA+CGG - chr8_3:5448156-5448175 Msa1271960:intron 25.0%
! AAACGACTTATAATTTAGGA+CGG - chr8_3:5448207-5448226 Msa1271960:intron 25.0%
! CTTTATATATATGCACATGA+AGG + chr8_3:5448948-5448967 None:intergenic 25.0%
! CTTCATGTGCATATATATAA+AGG - chr8_3:5448946-5448965 Msa1271960:CDS 25.0%
! GCACTATTAACACAAATTAT+AGG + chr8_3:5449105-5449124 None:intergenic 25.0%
! ACAAGAATTAACTTCTCATT+TGG + chr8_3:5449324-5449343 None:intergenic 25.0%
! AATGAGAAGTTAATTCTTGT+TGG - chr8_3:5449324-5449343 Msa1271960:CDS 25.0%
! ATAATAATATATAAGGTCCG+AGG - chr8_3:5449875-5449894 Msa1271960:intron 25.0%
! AAAAAAAAATATAAGGTCCG+AGG - chr8_3:5449932-5449951 Msa1271960:intron 25.0%
! AAAAAAAAATATAAGGTCCG+AGG - chr8_3:5449932-5449951 Msa1271960:intron 25.0%
! AACTTTGATTAAAGACAAAG+AGG - chr8_3:5450085-5450104 Msa1271960:intron 25.0%
! AACTTTGATTAAAGACAAAG+AGG - chr8_3:5450085-5450104 Msa1271960:intron 25.0%
!!! TAGAAGGATTAGTTCTTTAA+TGG - chr8_3:5450350-5450369 Msa1271960:CDS 25.0%
! AAATCCTACACATTTCAATT+TGG + chr8_3:5450581-5450600 None:intergenic 25.0%
! ACATCTTTATAAATTGGTAC+AGG + chr8_3:5450629-5450648 None:intergenic 25.0%
!! AAGTGATAATTTGATAACAG+AGG - chr8_3:5450724-5450743 Msa1271960:intron 25.0%
! TCAACTATATGTCTAAATAG+AGG + chr8_3:5451003-5451022 None:intergenic 25.0%
! ATAGATGCAATTAAAGTCTA+TGG - chr8_3:5451668-5451687 Msa1271960:intron 25.0%
! ATTATTCTACATATGGTCAA+TGG + chr8_3:5451712-5451731 None:intergenic 25.0%
! TGACCATATGTAGAATAATT+TGG - chr8_3:5451713-5451732 Msa1271960:intron 25.0%
! AACCAAAATCTTAATCCTTA+CGG + chr8_3:5451744-5451763 None:intergenic 25.0%
! CTATTTGTAAGTGTATATTG+AGG + chr8_3:5452030-5452049 None:intergenic 25.0%
! TTACATTTATCTCACTCTAA+TGG - chr8_3:5452052-5452071 Msa1271960:intron 25.0%
!!! GATTCATTCTTTTTCATATG+GGG - chr8_3:5452326-5452345 Msa1271960:intron 25.0%
!!! GTTTTTAGCCATAGTATAAT+AGG - chr8_3:5452498-5452517 Msa1271960:intron 25.0%
!! GTCTTTGAAAACTAGAAATT+TGG + chr8_3:5452667-5452686 None:intergenic 25.0%
!!! GATTTTGAAGATGTTTAAAC+AGG - chr8_3:5452703-5452722 Msa1271960:intron 25.0%
!! TACACTTTTGTATCAAAACT+TGG - chr8_3:5453258-5453277 Msa1271960:intron 25.0%
! TACAAAAGTTGACACATAAA+CGG + chr8_3:5453285-5453304 None:intergenic 25.0%
!! CGTGATTTGATGAATATTTT+TGG - chr8_3:5453802-5453821 Msa1271960:CDS 25.0%
! AGACAAAATTTCATCATTGA+CGG - chr8_3:5453871-5453890 Msa1271960:intron 25.0%
!! ATTTTTCTATTTACCTGAGA+TGG + chr8_3:5453967-5453986 None:intergenic 25.0%
! ACTGTTACAAATGAAAACAA+TGG - chr8_3:5454181-5454200 Msa1271960:intron 25.0%
! TACAAATGAAAACAATGGAA+TGG - chr8_3:5454186-5454205 Msa1271960:intron 25.0%
!! ATCATTTTCACTTTAGCATA+TGG + chr8_3:5454292-5454311 None:intergenic 25.0%
! CTGCAAGAGAAATTTTCTTA+GGG + chr8_3:5445345-5445364 None:intergenic 30.0%
! ACTGCAAGAGAAATTTTCTT+AGG + chr8_3:5445346-5445365 None:intergenic 30.0%
TAATCTTCTCTGATTCTATG+AGG + chr8_3:5445869-5445888 None:intergenic 30.0%
TGGTATGTTAAGGTAACTTA+GGG + chr8_3:5446426-5446445 None:intergenic 30.0%
ATGGTATGTTAAGGTAACTT+AGG + chr8_3:5446427-5446446 None:intergenic 30.0%
ACATTGAAGCCAATTATTGA+TGG - chr8_3:5446479-5446498 Msa1271960:intron 30.0%
TCTAATGAAAATGTCTCCTT+TGG + chr8_3:5446641-5446660 None:intergenic 30.0%
TTATGGATAATTGAGAGAAC+TGG - chr8_3:5446673-5446692 Msa1271960:CDS 30.0%
! AGTGATGAGCATATTTTGTT+TGG + chr8_3:5447064-5447083 None:intergenic 30.0%
! TGTCTATTGAGTCTATGTTT+TGG - chr8_3:5447144-5447163 Msa1271960:intron 30.0%
AGTTATCTATGCAAACTGTT+AGG + chr8_3:5447257-5447276 None:intergenic 30.0%
AAAAGTGGTCAATGATCATT+CGG + chr8_3:5447394-5447413 None:intergenic 30.0%
CCCTATACCATATTTAATGA+AGG + chr8_3:5448028-5448047 None:intergenic 30.0%
!!! GGTATAGGGAAGTTTTTTTT+AGG - chr8_3:5448039-5448058 Msa1271960:intron 30.0%
!!! GGAAGTTTTTTTTAGGGATA+TGG - chr8_3:5448046-5448065 Msa1271960:intron 30.0%
TTCCTTAACTTATGCTCTAA+AGG + chr8_3:5448442-5448461 None:intergenic 30.0%
TGAGAATGATGTGTGTTATA+TGG + chr8_3:5448671-5448690 None:intergenic 30.0%
TATATATAAAGGATCCATCG+CGG - chr8_3:5448957-5448976 Msa1271960:CDS 30.0%
TGAATCTCTTGTACTTGTAT+TGG + chr8_3:5449249-5449268 None:intergenic 30.0%
! TGAACCATTGATGTCATTTA+TGG - chr8_3:5449287-5449306 Msa1271960:CDS 30.0%
GATTCCATAAATGACATCAA+TGG + chr8_3:5449294-5449313 None:intergenic 30.0%
AGAATTAACTTCTCATTTGG+AGG + chr8_3:5449321-5449340 None:intergenic 30.0%
GGTAGTCCATAAAATTCAAA+AGG + chr8_3:5449682-5449701 None:intergenic 30.0%
GATATAATATATAAGGTCCG+AGG - chr8_3:5450117-5450136 Msa1271960:intron 30.0%
! ACAGAGTTTTTCTTCTTTGA+TGG - chr8_3:5450375-5450394 Msa1271960:CDS 30.0%
TGGTGATAATTGATACATCT+TGG + chr8_3:5450451-5450470 None:intergenic 30.0%
AACTCCAAATTGAAATGTGT+AGG - chr8_3:5450574-5450593 Msa1271960:CDS 30.0%
AGATGTTGAACTATTGTTGA+AGG - chr8_3:5450643-5450662 Msa1271960:intron 30.0%
ACTATTGTTGAAGGAAACAA+TGG - chr8_3:5450652-5450671 Msa1271960:intron 30.0%
ATGGTTACCAATGATAGAAA+TGG - chr8_3:5450671-5450690 Msa1271960:intron 30.0%
TACTCTTCCATTTCTATCAT+TGG + chr8_3:5450681-5450700 None:intergenic 30.0%
!! TTTTGCAATCTTTAAAAGGG+TGG + chr8_3:5450855-5450874 None:intergenic 30.0%
TGTAATAATAGTATATGGGC+TGG - chr8_3:5450897-5450916 Msa1271960:intron 30.0%
TATCTCAAATTGGAAAGTGA+TGG + chr8_3:5451390-5451409 None:intergenic 30.0%
AGCAGATAGAATGATGAATT+TGG + chr8_3:5451555-5451574 None:intergenic 30.0%
ACTTTAATTGCATCTATCCT+CGG + chr8_3:5451665-5451684 None:intergenic 30.0%
! TAGCAAGAGTACAATCAAAT+TGG + chr8_3:5451860-5451879 None:intergenic 30.0%
!!! TGATTGTACTCTTGCTATTT+TGG - chr8_3:5451863-5451882 Msa1271960:intron 30.0%
AGTGTACACCTATTATACTA+TGG + chr8_3:5452509-5452528 None:intergenic 30.0%
! TTTTGTACAAGCCATAAAGT+AGG - chr8_3:5452620-5452639 Msa1271960:intron 30.0%
TGGTTGTTAAACCTACTTTA+TGG + chr8_3:5452634-5452653 None:intergenic 30.0%
TAAATGTCATCAAAGGTTGA+TGG + chr8_3:5452894-5452913 None:intergenic 30.0%
! TCAACCTTTGATGACATTTA+TGG - chr8_3:5452894-5452913 Msa1271960:intron 30.0%
TGCCAATCAAAATACTCATT+AGG - chr8_3:5453126-5453145 Msa1271960:CDS 30.0%
GCCAATCAAAATACTCATTA+GGG - chr8_3:5453127-5453146 Msa1271960:CDS 30.0%
!!! TCCCTAATGAGTATTTTGAT+TGG + chr8_3:5453131-5453150 None:intergenic 30.0%
CATAACTACGTAAATTCAGT+AGG + chr8_3:5453233-5453252 None:intergenic 30.0%
AATAGTGGTATGTATCTACT+AGG - chr8_3:5453565-5453584 Msa1271960:intron 30.0%
! TTTCTCAAACTATGGACTAA+TGG + chr8_3:5453600-5453619 None:intergenic 30.0%
! TAGACTAAACACTTCTAGTT+AGG - chr8_3:5453684-5453703 Msa1271960:intron 30.0%
ACAGTTGTATGTGTGAATTT+AGG - chr8_3:5453724-5453743 Msa1271960:CDS 30.0%
CAGTTGTATGTGTGAATTTA+GGG - chr8_3:5453725-5453744 Msa1271960:CDS 30.0%
!! TGTTTTTATCACTTCGTCAA+AGG - chr8_3:5453751-5453770 Msa1271960:CDS 30.0%
!!! TGATGAATATTTTTGGTGTG+CGG - chr8_3:5453809-5453828 Msa1271960:CDS 30.0%
GACAAAATTTCATCATTGAC+GGG - chr8_3:5453872-5453891 Msa1271960:intron 30.0%
CAAATTCGATTTCTATATGC+AGG - chr8_3:5454076-5454095 Msa1271960:intron 30.0%
! TCAGAGATGATGAAGATTTT+AGG + chr8_3:5454214-5454233 None:intergenic 30.0%
!! AGTTTACTTCAAGAGGTACT+TGG - chr8_3:5445409-5445428 Msa1271960:CDS 35.0%
GTTATTTGGATCCAAACTCT+TGG - chr8_3:5445957-5445976 Msa1271960:intron 35.0%
AGGCGATAATTGATACAGAT+TGG + chr8_3:5445986-5446005 None:intergenic 35.0%
GTATCAATTATCGCCTAATG+AGG - chr8_3:5445990-5446009 Msa1271960:intron 35.0%
CGCATGTTACCATCAATAAT+TGG + chr8_3:5446491-5446510 None:intergenic 35.0%
TCGTCATTAAAGATAGGATG+TGG + chr8_3:5446547-5446566 None:intergenic 35.0%
! AGGAGACATTTTCATTAGAG+AGG - chr8_3:5446642-5446661 Msa1271960:intron 35.0%
TTAGAGAGGATCTGCAATTA+TGG - chr8_3:5446656-5446675 Msa1271960:CDS 35.0%
ATCACTTTCACCTCATCATA+TGG + chr8_3:5446700-5446719 None:intergenic 35.0%
TGATGAGGTGAAAGTGATAA+AGG - chr8_3:5446702-5446721 Msa1271960:CDS 35.0%
GATAAAGGATTCAGATCACA+TGG - chr8_3:5446717-5446736 Msa1271960:CDS 35.0%
!!! AGAGGTGAGTTTTTTAGGTT+TGG + chr8_3:5446752-5446771 None:intergenic 35.0%
!!! ATGTGAGAGGTGAGTTTTTT+AGG + chr8_3:5446757-5446776 None:intergenic 35.0%
ATCTATGCAAACTGTTAGGT+TGG + chr8_3:5447253-5447272 None:intergenic 35.0%
!!! TCTTTCTTTTGAGATTCGAG+TGG - chr8_3:5447583-5447602 Msa1271960:intron 35.0%
AATATTGGATGTACAGAACG+TGG - chr8_3:5447653-5447672 Msa1271960:intron 35.0%
CTCTGAACATACAAAGATTG+TGG + chr8_3:5447685-5447704 None:intergenic 35.0%
AAAGTTGTTGCTAACTGTAG+TGG - chr8_3:5447770-5447789 Msa1271960:intron 35.0%
!!! TTTTTTTACACCTCTGACTC+AGG + chr8_3:5447808-5447827 None:intergenic 35.0%
TAGAGATCGTTGCTATAACT+AGG + chr8_3:5447883-5447902 None:intergenic 35.0%
! GACTTATAATTTAGGACGGA+TGG - chr8_3:5448211-5448230 Msa1271960:intron 35.0%
TCTCAAACGAAGATGATTCT+AGG - chr8_3:5448366-5448385 Msa1271960:intron 35.0%
!! GTCCTTTAGAGCATAAGTTA+AGG - chr8_3:5448437-5448456 Msa1271960:intron 35.0%
TTATATGGAGCTCTCAAAAG+TGG + chr8_3:5448656-5448675 None:intergenic 35.0%
TATTCTTATTAGAACCGCGA+TGG + chr8_3:5448974-5448993 None:intergenic 35.0%
!!! GCAAATTTTGTGCTGATTCA+TGG - chr8_3:5449123-5449142 Msa1271960:intron 35.0%
!!! AATTTTGTGCTGATTCATGG+TGG - chr8_3:5449126-5449145 Msa1271960:intron 35.0%
GTTACAACAATTGAATTGGC+TGG - chr8_3:5449210-5449229 Msa1271960:intron 35.0%
ATTCTTGTTGGTCATAGTCT+TGG - chr8_3:5449336-5449355 Msa1271960:CDS 35.0%
!!! ACTGCAACTGAGATTTTTTG+TGG + chr8_3:5449396-5449415 None:intergenic 35.0%
TTACCTCTTGAAGAACAACA+GGG + chr8_3:5449458-5449477 None:intergenic 35.0%
ATTACCTCTTGAAGAACAAC+AGG + chr8_3:5449459-5449478 None:intergenic 35.0%
!!! TTTTTTTTTGTGGTGGCTTG+TGG + chr8_3:5449916-5449935 None:intergenic 35.0%
!!! TTTTTTTTTGTGGTGGCTTG+TGG + chr8_3:5449916-5449935 None:intergenic 35.0%
!!! TTTTTTTTTGTGGTGGCTTG+TGG + chr8_3:5449916-5449935 None:intergenic 35.0%
ATTGGTTGGACCAAAATTCA+TGG - chr8_3:5450422-5450441 Msa1271960:CDS 35.0%
! ATCTTGGATGCCATGAATTT+TGG + chr8_3:5450435-5450454 None:intergenic 35.0%
GTATCAATTATCACCATCTG+AGG - chr8_3:5450455-5450474 Msa1271960:CDS 35.0%
GGTGGAGTATATGTTAATGT+TGG - chr8_3:5450476-5450495 Msa1271960:CDS 35.0%
!! ATGTTGATGATTGAGAGAAG+TGG - chr8_3:5450755-5450774 Msa1271960:intron 35.0%
AGAAAAAGGAGAAGACATGA+AGG + chr8_3:5451182-5451201 None:intergenic 35.0%
CAATAGAGAGGGTAAGAAAA+AGG + chr8_3:5451196-5451215 None:intergenic 35.0%
! ATTTGGTAGCACAATAGAGA+GGG + chr8_3:5451207-5451226 None:intergenic 35.0%
ATATGTGACAAATGTAGAGG+TGG + chr8_3:5451287-5451306 None:intergenic 35.0%
ACCTCTACATTTGTCACATA+TGG - chr8_3:5451286-5451305 Msa1271960:intron 35.0%
ACCATATGTGACAAATGTAG+AGG + chr8_3:5451290-5451309 None:intergenic 35.0%
! CTGTGTTTGTTGAAACTTGT+TGG - chr8_3:5451498-5451517 Msa1271960:intron 35.0%
CCTCGGAAAAAAACTATTGT+TGG + chr8_3:5451648-5451667 None:intergenic 35.0%
!!! CCAACAATAGTTTTTTTCCG+AGG - chr8_3:5451645-5451664 Msa1271960:intron 35.0%
!! AATAATTTGGTTTGGCCGTA+AGG - chr8_3:5451726-5451745 Msa1271960:intron 35.0%
ACTTTCACAATTGAATGGTC+AGG - chr8_3:5451920-5451939 Msa1271960:intron 35.0%
AAGCTCGAATTCACTACATT+AGG - chr8_3:5452084-5452103 Msa1271960:intron 35.0%
!! TCTTTCGTTGATAGTCTTTC+TGG - chr8_3:5452199-5452218 Msa1271960:intron 35.0%
!!! TTTAGCCAAATTTTTTCGGC+TGG - chr8_3:5452456-5452475 Msa1271960:intron 35.0%
TTTAGCCAGCCGAAAAAATT+TGG + chr8_3:5452464-5452483 None:intergenic 35.0%
TGGCTAAATAACTTTATGGC+TGG - chr8_3:5452476-5452495 Msa1271960:intron 35.0%
!! AAGCACTTTGTGTTGATTCA+TGG - chr8_3:5452728-5452747 Msa1271960:intron 35.0%
GACTCCATAAATGTCATCAA+AGG + chr8_3:5452901-5452920 None:intergenic 35.0%
! CTGCAACAAAGATTTTGTGA+GGG + chr8_3:5453002-5453021 None:intergenic 35.0%
! ACTGCAACAAAGATTTTGTG+AGG + chr8_3:5453003-5453022 None:intergenic 35.0%
! TTATCGTGCTTTTCTTCAAG+AGG - chr8_3:5453059-5453078 Msa1271960:CDS 35.0%
CCTTACAAATGGAAAGTCAA+TGG + chr8_3:5453172-5453191 None:intergenic 35.0%
!! CCATTGACTTTCCATTTGTA+AGG - chr8_3:5453169-5453188 Msa1271960:CDS 35.0%
TTGTATGTGTGAATTTAGGG+TGG - chr8_3:5453728-5453747 Msa1271960:CDS 35.0%
TTTGACACTTGCTTTATCTC+TGG - chr8_3:5454100-5454119 Msa1271960:intron 35.0%
AAATCAGCATCGCTCAAAAA+GGG + chr8_3:5454145-5454164 None:intergenic 35.0%
TAAATCAGCATCGCTCAAAA+AGG + chr8_3:5454146-5454165 None:intergenic 35.0%
GAATGGATAATTGAGACAAC+CGG - chr8_3:5454265-5454284 Msa1271960:intron 35.0%
TTTCACTTTAGCATATGGAC+CGG + chr8_3:5454287-5454306 None:intergenic 35.0%
TGCTAAAGTGAAAATGATCG+AGG - chr8_3:5454294-5454313 Msa1271960:intron 35.0%
GCTAAAGTGAAAATGATCGA+GGG - chr8_3:5454295-5454314 Msa1271960:intron 35.0%
!! AGAGCTAAGTTTTGTAGGTT+TGG + chr8_3:5454344-5454363 None:intergenic 35.0%
!! AGTTCAGAGCTAAGTTTTGT+AGG + chr8_3:5454349-5454368 None:intergenic 35.0%
GATCCAAATAACAAGCCAGT+TGG + chr8_3:5445949-5445968 None:intergenic 40.0%
! TTATTGATGGTAACATGCGC+AGG - chr8_3:5446492-5446511 Msa1271960:intron 40.0%
AAACAAGAGTTACCAAGCAG+AGG - chr8_3:5446584-5446603 Msa1271960:intron 40.0%
!! AGCAGTCTTTAGAATGTGAG+AGG + chr8_3:5446770-5446789 None:intergenic 40.0%
GCAACGATCTCTATAGACAA+AGG - chr8_3:5447890-5447909 Msa1271960:intron 40.0%
AGTCAAATGCTAACATGCGT+GGG + chr8_3:5448580-5448599 None:intergenic 40.0%
AAGTCAAATGCTAACATGCG+TGG + chr8_3:5448581-5448600 None:intergenic 40.0%
GCAACTATGCTTAAATCAGC+TGG - chr8_3:5449180-5449199 Msa1271960:intron 40.0%
! ACAATTGAATTGGCTGGTTC+AGG - chr8_3:5449216-5449235 Msa1271960:intron 40.0%
! TTGTTGGTCATAGTCTTGGT+GGG - chr8_3:5449340-5449359 Msa1271960:CDS 40.0%
ATACCCTGTTGTTCTTCAAG+AGG - chr8_3:5449452-5449471 Msa1271960:intron 40.0%
TCAATTATCACCATCTGAGG+TGG - chr8_3:5450458-5450477 Msa1271960:CDS 40.0%
AACATATACTCCACCTCAGA+TGG + chr8_3:5450471-5450490 None:intergenic 40.0%
AATTGGTACAGGTCTCACTA+GGG + chr8_3:5450618-5450637 None:intergenic 40.0%
AAATTGGTACAGGTCTCACT+AGG + chr8_3:5450619-5450638 None:intergenic 40.0%
ATCACTTCCACCTTCTCAAA+TGG + chr8_3:5450782-5450801 None:intergenic 40.0%
GATAGAGGATTCTGATCACA+TGG - chr8_3:5450799-5450818 Msa1271960:intron 40.0%
!!! TACGGGTTTGTTAGGGTTTT+GGG - chr8_3:5451088-5451107 Msa1271960:intron 40.0%
! GATTTGGTAGCACAATAGAG+AGG + chr8_3:5451208-5451227 None:intergenic 40.0%
AGATAGACTTGTAAGAGGGA+TGG + chr8_3:5451249-5451268 None:intergenic 40.0%
CCGAAGATAGACTTGTAAGA+GGG + chr8_3:5451253-5451272 None:intergenic 40.0%
CCCTCTTACAAGTCTATCTT+CGG - chr8_3:5451250-5451269 Msa1271960:intron 40.0%
ACCGAAGATAGACTTGTAAG+AGG + chr8_3:5451254-5451273 None:intergenic 40.0%
GAGATCTCACACTACAATTG+GGG + chr8_3:5451318-5451337 None:intergenic 40.0%
GGAGATCTCACACTACAATT+GGG + chr8_3:5451319-5451338 None:intergenic 40.0%
TGGAGATCTCACACTACAAT+TGG + chr8_3:5451320-5451339 None:intergenic 40.0%
ATTGTAGTGTGAGATCTCCA+TGG - chr8_3:5451320-5451339 Msa1271960:intron 40.0%
TTGTAGTGTGAGATCTCCAT+GGG - chr8_3:5451321-5451340 Msa1271960:intron 40.0%
!! TCTATGGTGGCTTTTTAGGA+GGG + chr8_3:5451347-5451366 None:intergenic 40.0%
!! TTCTATGGTGGCTTTTTAGG+AGG + chr8_3:5451348-5451367 None:intergenic 40.0%
! GGTTTCTATGGTGGCTTTTT+AGG + chr8_3:5451351-5451370 None:intergenic 40.0%
AAAACACAGGGTTTCTATGG+TGG + chr8_3:5451360-5451379 None:intergenic 40.0%
! ACCATAGAAACCCTGTGTTT+TGG - chr8_3:5451359-5451378 Msa1271960:intron 40.0%
ACCAAAACACAGGGTTTCTA+TGG + chr8_3:5451363-5451382 None:intergenic 40.0%
GCAAATGTCTTGTCAACATG+TGG - chr8_3:5451577-5451596 Msa1271960:intron 40.0%
! CGACTATGAGGTCTTTGAAA+TGG + chr8_3:5451612-5451631 None:intergenic 40.0%
TTTCGGTCATTTCGACTATG+AGG + chr8_3:5451624-5451643 None:intergenic 40.0%
! GGCCGTAAGGATTAAGATTT+TGG - chr8_3:5451739-5451758 Msa1271960:intron 40.0%
TAGTGAATTCGAGCTTCCAT+TGG + chr8_3:5452080-5452099 None:intergenic 40.0%
!! AGTCTTTCTGGCATCTTTTG+AGG - chr8_3:5452211-5452230 Msa1271960:intron 40.0%
!! TTCTGGCATCTTTTGAGGAA+TGG - chr8_3:5452216-5452235 Msa1271960:intron 40.0%
! CGGCTGGCTAAATAACTTTA+TGG - chr8_3:5452472-5452491 Msa1271960:intron 40.0%
!! CACTTTGTGTTGATTCATGG+AGG - chr8_3:5452731-5452750 Msa1271960:intron 40.0%
GCAACTGAACTAAAATCAGC+TGG - chr8_3:5452787-5452806 Msa1271960:intron 40.0%
TAAAGTCACAGCACTAGACA+TGG - chr8_3:5452813-5452832 Msa1271960:intron 40.0%
TGAACTTCTTGCATCTGCTT+TGG + chr8_3:5452856-5452875 None:intergenic 40.0%
AGAACTACTTTCTCCTCACA+AGG + chr8_3:5452928-5452947 None:intergenic 40.0%
GAGGAGAAAGTAGTTCTTGT+TGG - chr8_3:5452931-5452950 Msa1271960:intron 40.0%
GTTGTCTGTGTCTATTGCTA+TGG - chr8_3:5452969-5452988 Msa1271960:intron 40.0%
! GAAGAAAAGCACGATAAGTG+AGG + chr8_3:5453056-5453075 None:intergenic 40.0%
ATGTAGCGAAGGAGAAGAAT+AGG - chr8_3:5453835-5453854 Msa1271960:intron 40.0%
TGGTGATAACTGGTACATTC+TGG + chr8_3:5453947-5453966 None:intergenic 40.0%
TTACCTGAGATGGTGATAAC+TGG + chr8_3:5453957-5453976 None:intergenic 40.0%
CACTTGCTTTATCTCTGGTA+CGG - chr8_3:5454105-5454124 Msa1271960:intron 40.0%
TCAGAGAAGACTAACTGTGG+TGG + chr8_3:5445910-5445929 None:intergenic 45.0%
CCATCAGAGAAGACTAACTG+TGG + chr8_3:5445913-5445932 None:intergenic 45.0%
!! CCACAGTTAGTCTTCTCTGA+TGG - chr8_3:5445910-5445929 Msa1271960:intron 45.0%
CCAAATAACAAGCCAGTTGG+AGG + chr8_3:5445946-5445965 None:intergenic 45.0%
!! CCTCCAACTGGCTTGTTATT+TGG - chr8_3:5445943-5445962 Msa1271960:intron 45.0%
CAGATTGGATGCCAAGAGTT+TGG + chr8_3:5445971-5445990 None:intergenic 45.0%
TTTGACACTTGGATCGTCGT+TGG - chr8_3:5446516-5446535 Msa1271960:intron 45.0%
AGAGTTACCAAGCAGAGGAA+TGG - chr8_3:5446589-5446608 Msa1271960:intron 45.0%
TTACCAAGCAGAGGAATGGA+AGG - chr8_3:5446593-5446612 Msa1271960:intron 45.0%
TACCAAGCAGAGGAATGGAA+GGG - chr8_3:5446594-5446613 Msa1271960:intron 45.0%
GAGAACTGGTCCATATGATG+AGG - chr8_3:5446687-5446706 Msa1271960:CDS 45.0%
GACTCATGCACTTTGCAAGT+TGG + chr8_3:5447730-5447749 None:intergenic 45.0%
AGTCGACGTCAATTGGACAA+CGG - chr8_3:5447746-5447765 Msa1271960:intron 45.0%
TATACCAACACCATGCACCA+TGG + chr8_3:5449155-5449174 None:intergenic 45.0%
!! TGGTGCATGGTGTTGGTATA+AGG - chr8_3:5449155-5449174 Msa1271960:intron 45.0%
! CTTGTTGGTCATAGTCTTGG+TGG - chr8_3:5449339-5449358 Msa1271960:CDS 45.0%
! TGTTGGTCATAGTCTTGGTG+GGG - chr8_3:5449341-5449360 Msa1271960:CDS 45.0%
GGTGTCTACATCTGTTGCTA+TGG - chr8_3:5449362-5449381 Msa1271960:intron 45.0%
GAAGAACAACAGGGTATGAG+AGG + chr8_3:5449449-5449468 None:intergenic 45.0%
!!! TTTTTTGTGGTGGCTTGTGG+TGG + chr8_3:5449913-5449932 None:intergenic 45.0%
!!! TTTTTTGTGGTGGCTTGTGG+TGG + chr8_3:5449913-5449932 None:intergenic 45.0%
!!! TTTTTTGTGGTGGCTTGTGG+TGG + chr8_3:5449913-5449932 None:intergenic 45.0%
!! CCTTCTAGCTTGCTACAAGA+TGG + chr8_3:5450337-5450356 None:intergenic 45.0%
CCATCTTGTAGCAAGCTAGA+AGG - chr8_3:5450334-5450353 Msa1271960:CDS 45.0%
! CTAGCAGTTGCAGGTTTGTT+GGG + chr8_3:5450402-5450421 None:intergenic 45.0%
TCTAGCAGTTGCAGGTTTGT+TGG + chr8_3:5450403-5450422 None:intergenic 45.0%
CAAACCTGCAACTGCTAGAT+TGG - chr8_3:5450404-5450423 Msa1271960:CDS 45.0%
TCTCACTAGGGACAATGCAA+GGG + chr8_3:5450606-5450625 None:intergenic 45.0%
GAGAAGTGGTCCATTTGAGA+AGG - chr8_3:5450769-5450788 Msa1271960:intron 45.0%
AAGTGGTCCATTTGAGAAGG+TGG - chr8_3:5450772-5450791 Msa1271960:intron 45.0%
TGAGAAGGTGGAAGTGATAG+AGG - chr8_3:5450784-5450803 Msa1271960:intron 45.0%
AGGGTGGAACTAAGCTTCTT+TGG + chr8_3:5450839-5450858 None:intergenic 45.0%
!! CTTGCTCTACGGGTTTGTTA+GGG - chr8_3:5451081-5451100 Msa1271960:intron 45.0%
!!! CTACGGGTTTGTTAGGGTTT+TGG - chr8_3:5451087-5451106 Msa1271960:intron 45.0%
!! AGATGACACAGTGGTTTGGT+AGG + chr8_3:5451159-5451178 None:intergenic 45.0%
AAGGAGATGACACAGTGGTT+TGG + chr8_3:5451163-5451182 None:intergenic 45.0%
ACATGAAGGAGATGACACAG+TGG + chr8_3:5451168-5451187 None:intergenic 45.0%
GGTGGTTAGAGCTAGTGATT+TGG + chr8_3:5451224-5451243 None:intergenic 45.0%
AGACTTGTAAGAGGGATGGT+TGG + chr8_3:5451245-5451264 None:intergenic 45.0%
TGTGACAAATGTAGAGGTGG+TGG + chr8_3:5451284-5451303 None:intergenic 45.0%
GATGGAGTGACCAAAACACA+GGG + chr8_3:5451372-5451391 None:intergenic 45.0%
TGATGGAGTGACCAAAACAC+AGG + chr8_3:5451373-5451392 None:intergenic 45.0%
TCTCACTCTAATGGCACCAA+TGG - chr8_3:5452061-5452080 Msa1271960:intron 45.0%
!! TTGATTCATGGAGGCATCCA+TGG - chr8_3:5452740-5452759 Msa1271960:intron 45.0%
TATACCAACACCATGCACCA+TGG + chr8_3:5449155-5449174 None:intergenic 45.0%
TATGGAGTCACTTCCTTGTG+AGG - chr8_3:5452912-5452931 Msa1271960:intron 45.0%
GTTCTTGTTGGTCGTAGTCT+TGG - chr8_3:5452943-5452962 Msa1271960:intron 45.0%
! TTGTTGGTCGTAGTCTTGGA+GGG - chr8_3:5452947-5452966 Msa1271960:intron 45.0%
GAGAAGAATAGGCTCAGCTT+TGG - chr8_3:5453846-5453865 Msa1271960:intron 45.0%
GTACCAGTTATCACCATCTC+AGG - chr8_3:5453951-5453970 Msa1271960:intron 45.0%
TCGCTCAAAAAGGGAGGTAA+TGG + chr8_3:5454136-5454155 None:intergenic 45.0%
GATCGAGGGTTCAGATCATA+TGG - chr8_3:5454309-5454328 Msa1271960:CDS 45.0%
!! ATTCAAAATTAAAATTATTA+GGG - chr8_3:5445647-5445666 Msa1271960:intron 5.0%
!! ATGTATAATATAATATAATA+TGG + chr8_3:5446446-5446465 None:intergenic 5.0%
!!! TGTATTATTTTAAAAATAAA+TGG - chr8_3:5446881-5446900 Msa1271960:CDS 5.0%
!!! TATTTGTTATTTTTTATTTT+AGG - chr8_3:5448401-5448420 Msa1271960:intron 5.0%
!!! ATTTGTTATTTTTTATTTTA+GGG - chr8_3:5448402-5448421 Msa1271960:intron 5.0%
!!! TTATATTTTTTTTTTTTTTG+TGG + chr8_3:5449926-5449945 None:intergenic 5.0%
!! ACAAAAAAAAAAAAAATATA+AGG - chr8_3:5449925-5449944 Msa1271960:intron 5.0%
!! TTATATATTATATCATATAT+GGG + chr8_3:5450111-5450130 None:intergenic 5.0%
!! TTTCATTAATAATATAATAA+TGG + chr8_3:5452559-5452578 None:intergenic 5.0%
!! CTGTGGTGGATCTTGTTGAG+TGG + chr8_3:5445896-5445915 None:intergenic 50.0%
AAGCCAGTTGGAGGACTGTT+TGG + chr8_3:5445937-5445956 None:intergenic 50.0%
TTAGAAGGCCTTCCCTAGCA+AGG - chr8_3:5446356-5446375 Msa1271960:intron 50.0%
TCTTAACCCCCTCCTTGCTA+GGG + chr8_3:5446371-5446390 None:intergenic 50.0%
CATGCGCAGGATTTGACACT+TGG - chr8_3:5446505-5446524 Msa1271960:intron 50.0%
TACCCTTCCATTCCTCTGCT+TGG + chr8_3:5446599-5446618 None:intergenic 50.0%
GTGCATGAGTCGACGTCAAT+TGG - chr8_3:5447739-5447758 Msa1271960:intron 50.0%
TATCCCAGATCCTGAGTCAG+AGG - chr8_3:5447795-5447814 Msa1271960:intron 50.0%
ACACCTCTGACTCAGGATCT+GGG + chr8_3:5447801-5447820 None:intergenic 50.0%
TACACCTCTGACTCAGGATC+TGG + chr8_3:5447802-5447821 None:intergenic 50.0%
! CTGATTCATGGTGGAAGCCA+TGG - chr8_3:5449135-5449154 Msa1271960:intron 50.0%
AAGGTCCGAGGTTCAAACCT+CGG - chr8_3:5449887-5449906 Msa1271960:intron 50.0%
AAGGTCCGAGGTTCAAACCT+CGG - chr8_3:5449887-5449906 Msa1271960:intron 50.0%
AAGGTCCGAGGTTCAAACCT+CGG - chr8_3:5449887-5449906 Msa1271960:intron 50.0%
AAGGTCCGAGGTTCAAACCT+CGG - chr8_3:5449887-5449906 Msa1271960:intron 50.0%
CCAACCAATCTAGCAGTTGC+AGG + chr8_3:5450411-5450430 None:intergenic 50.0%
CCTGCAACTGCTAGATTGGT+TGG - chr8_3:5450408-5450427 Msa1271960:CDS 50.0%
GTCTCACTAGGGACAATGCA+AGG + chr8_3:5450607-5450626 None:intergenic 50.0%
AACAAACCCGTAGAGCAAGG+AGG + chr8_3:5451080-5451099 None:intergenic 50.0%
CCTAACAAACCCGTAGAGCA+AGG + chr8_3:5451083-5451102 None:intergenic 50.0%
! CCTTGCTCTACGGGTTTGTT+AGG - chr8_3:5451080-5451099 Msa1271960:intron 50.0%
CTTGTAAGAGGGATGGTTGG+TGG + chr8_3:5451242-5451261 None:intergenic 50.0%
! CTTGTTGGTCGTAGTCTTGG+AGG - chr8_3:5452946-5452965 Msa1271960:intron 50.0%
! GAGAGGATTGGAGCTTTGTC+TGG + chr8_3:5453898-5453917 None:intergenic 50.0%
TCAGCATCGCTCAAAAAGGG+AGG + chr8_3:5454142-5454161 None:intergenic 50.0%
GGACCAAACAGTCCTCCAAC+TGG - chr8_3:5445931-5445950 Msa1271960:intron 55.0%
AAGGCCTTCCCTAGCAAGGA+GGG - chr8_3:5446360-5446379 Msa1271960:intron 55.0%
GTCTTAACCCCCTCCTTGCT+AGG + chr8_3:5446372-5446391 None:intergenic 55.0%
! ATGGTGGAAGCCATGGTGCA+TGG - chr8_3:5449142-5449161 Msa1271960:intron 55.0%
GAAGCCATGGTGCATGGTGT+TGG - chr8_3:5449148-5449167 Msa1271960:intron 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr8_3:5449832-5449851 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr8_3:5449829-5449848 Msa1271960:intron 55.0%
AAACCCGTAGAGCAAGGAGG+CGG + chr8_3:5451077-5451096 None:intergenic 55.0%
!! TGGCTTTTTAGGAGGGCCCA+TGG + chr8_3:5451340-5451359 None:intergenic 55.0%
!! ATGGAGGCATCCATGGTGCA+TGG - chr8_3:5452747-5452766 Msa1271960:intron 55.0%
GCATCCATGGTGCATGGTGT+TGG - chr8_3:5452753-5452772 Msa1271960:intron 55.0%
GCACTAGACATGGCTGCTTG+TGG - chr8_3:5452823-5452842 Msa1271960:intron 55.0%
GTGTGCGGAACATGTAGCGA+AGG - chr8_3:5453824-5453843 Msa1271960:CDS 55.0%
GCTCCAATCCTCTCGTCTGA+CGG - chr8_3:5453904-5453923 Msa1271960:intron 55.0%
AGTCCGTCAGACGAGAGGAT+TGG + chr8_3:5453910-5453929 None:intergenic 55.0%
AATCGAGTCCGTCAGACGAG+AGG + chr8_3:5453915-5453934 None:intergenic 55.0%
GAAGGCCTTCCCTAGCAAGG+AGG - chr8_3:5446359-5446378 Msa1271960:intron 60.0%
AGGCCTTCCCTAGCAAGGAG+GGG - chr8_3:5446361-5446380 Msa1271960:intron 60.0%
AACCCCCTCCTTGCTAGGGA+AGG + chr8_3:5446367-5446386 None:intergenic 60.0%
GGTGGCCGAGGTTTGAACCT+CGG + chr8_3:5449895-5449914 None:intergenic 60.0%
GGTGGCCGAGGTTTGAACCT+CGG + chr8_3:5449895-5449914 None:intergenic 60.0%
GGTGGCCGAGGTTTGAACCT+CGG + chr8_3:5449895-5449914 None:intergenic 60.0%
GGTGGCCGAGGTTTGAACCT+CGG + chr8_3:5449895-5449914 None:intergenic 60.0%
TAGAGCAAGGAGGCGGTGCA+AGG + chr8_3:5451070-5451089 None:intergenic 60.0%
TGCACCGCCTCCTTGCTCTA+CGG - chr8_3:5451070-5451089 Msa1271960:intron 60.0%
GGCCTTCCCTAGCAAGGAGG+GGG - chr8_3:5446362-5446381 Msa1271960:intron 65.0%
GCACCGCCTCCTTGCTCTAC+GGG - chr8_3:5451071-5451090 Msa1271960:intron 65.0%
! GTGGTGGCTTGTGGTGGCCG+AGG + chr8_3:5449907-5449926 None:intergenic 70.0%
! GTGGTGGCTTGTGGTGGCCG+AGG + chr8_3:5449907-5449926 None:intergenic 70.0%
! GTGGTGGCTTGTGGTGGCCG+AGG + chr8_3:5449907-5449926 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 5445331 5454393 5445331 ID=Msa1271960;Name=Msa1271960
chr8_3 mRNA 5445331 5454393 5445331 ID=Msa1271960-mRNA-1;Parent=Msa1271960;Name=Msa1271960-mRNA-1;_AED=0.09;_eAED=0.11;_QI=0|0|0|1|1|1|9|0|669
chr8_3 exon 5454301 5454393 5454301 ID=Msa1271960-mRNA-1:exon:1980;Parent=Msa1271960-mRNA-1
chr8_3 exon 5453713 5453850 5453713 ID=Msa1271960-mRNA-1:exon:1979;Parent=Msa1271960-mRNA-1
chr8_3 exon 5452981 5453210 5452981 ID=Msa1271960-mRNA-1:exon:1978;Parent=Msa1271960-mRNA-1
chr8_3 exon 5450251 5450602 5450251 ID=Msa1271960-mRNA-1:exon:1977;Parent=Msa1271960-mRNA-1
chr8_3 exon 5449248 5449379 5449248 ID=Msa1271960-mRNA-1:exon:1976;Parent=Msa1271960-mRNA-1
chr8_3 exon 5448876 5449128 5448876 ID=Msa1271960-mRNA-1:exon:1975;Parent=Msa1271960-mRNA-1
chr8_3 exon 5446644 5446999 5446644 ID=Msa1271960-mRNA-1:exon:1974;Parent=Msa1271960-mRNA-1
chr8_3 exon 5445752 5445883 5445752 ID=Msa1271960-mRNA-1:exon:1973;Parent=Msa1271960-mRNA-1
chr8_3 exon 5445331 5445654 5445331 ID=Msa1271960-mRNA-1:exon:1972;Parent=Msa1271960-mRNA-1
chr8_3 CDS 5454301 5454393 5454301 ID=Msa1271960-mRNA-1:cds;Parent=Msa1271960-mRNA-1
chr8_3 CDS 5453713 5453850 5453713 ID=Msa1271960-mRNA-1:cds;Parent=Msa1271960-mRNA-1
chr8_3 CDS 5452981 5453210 5452981 ID=Msa1271960-mRNA-1:cds;Parent=Msa1271960-mRNA-1
chr8_3 CDS 5450251 5450602 5450251 ID=Msa1271960-mRNA-1:cds;Parent=Msa1271960-mRNA-1
chr8_3 CDS 5449248 5449379 5449248 ID=Msa1271960-mRNA-1:cds;Parent=Msa1271960-mRNA-1
chr8_3 CDS 5448876 5449128 5448876 ID=Msa1271960-mRNA-1:cds;Parent=Msa1271960-mRNA-1
chr8_3 CDS 5446644 5446999 5446644 ID=Msa1271960-mRNA-1:cds;Parent=Msa1271960-mRNA-1
chr8_3 CDS 5445752 5445883 5445752 ID=Msa1271960-mRNA-1:cds;Parent=Msa1271960-mRNA-1
chr8_3 CDS 5445331 5445654 5445331 ID=Msa1271960-mRNA-1:cds;Parent=Msa1271960-mRNA-1
Gene Sequence

>Msa1271960

ATGGAAAAGTTCCCTAAGAAAATTTCTCTTGCAGTTTTTGTCACTGCATTCGTGATTAGTGAAAACCTCAATTTTACAAGTTTACTTCAAGAGAATCAGAGAAGATTAAATTCCACTCAACAAGATCCACCACAGTTAGTCTTCTCTGATGGACCAAACAGTCCTCCAACTGGCTTGTTATTTGGATCCAAACTCTTGGCATCCAATCTGTATCAATTATCGCCTAATGAGGATTTGACACTTGGATCGTCGTTGGTGAGACCACATCCTATCTTTAATGACGAAAAACTGGTGCTGAAAGAAACAAGAGTTACCAAGCAGAGGAATGGAAGGGTACCAAAAGTCTTCATTATTTCCAAAGGAGACATTTTCATTAGAGAGGATCTGCAATTATGGATAATTGAGAGAACTGGTCCATATGATGAGGTGAAAGTGATAAAGGATTCAGATCACATGGTCATTGCAAATTTTGTGCTGATTCATGGTGGAAGCCATGGTGCATGGTGTTGGTATAAGGTTGCAACTATGCTTAAATCAGCTGGTCATAATGTTACAACAATTGAATTGGCTGGTTCAGGTATCAATCCAATACAAGTACAAGAGATTCATTCAACTTCAAAATATTATGAACCATTGATGTCATTTATGGAATCTCTTCCTCCAAATGAGAAGTTAATTCTTGTTGGTCATAGTCTTGGTGGGGTGTCTACATCTGTTGCTATGGAAAAGTTTCCACAAAAAATCTCAGTTGCAGTTTTTGTTACTGCTTATGTGCTTAGTCAAAACCTCTCATACCCTGTTGTTCTTCAAGAGCAAGCTAGAAGGATTAGTTCTTTAATGGACACAGAGTTTTTCTTCTTTGATGGACCCAACAAACCTGCAACTGCTAGATTGGTTGGACCAAAATTCATGGCATCCAAGATGTATCAATTATCACCATCTGAGGATTTGACCCTTGCATTGTCCCTAGTGAGACCTGTACCAATTTATAAAGATGTTGAACTATTGTTGAAGGAAACAATGGTTACCAATGATAGAAATGGAAGAGTACCTAAAATTTTTATCATAAGCAAAAGTGATAATTTGATAACAGAGGATTTACAAATGTTGATGATTGAGAGAAGTGGTCCATTTGAGAAGGTGGAAGTGATAGAGGATTCTGATCACATGGTCATGTTCTCTAAACCAAAGAAGCTTAGAAAAGCACTTTGTGTTGATTCATGGAGGCATCCATGGTGCATGGTGTTGGTATATAAGATTGCAACTGAACTAAAATCAGCTGGTCATAAAGTCACAGCACTAGACATGGCTGCTTGTGGTATCAATCCAAAGCAGATGCAAGAAGTTCATTCAATTTCTGAATACCATCAACCTTTGATGACATTTATGGAGTCACTTCCTTGTGAGGAGAAAGTAGTTCTTGTTGGTCGTAGTCTTGGAGGGTTGTCTGTGTCTATTGCTATGGAAAACTACCCTCACAAAATCTTTGTTGCAGTTTTCATCACAGCAACTGTTGTCACTCAAAACCTCACTTATCGTGCTTTTCTTCAAGAGCGAAGGAGAAGAATAGGCTCAGCTTTGGACAGACAAAATTTCATCATTGACGGGCCAGACAAAGCTCCAATCCTCTCGTCTGACGGACTCGATTTGTTAGCATCCAGAATGTACCAGTTATCACCATCTCAGTTAAAGCAAATTCGATTTCTATATGCAGGATTTGACACTTGCTTTATCTCTGGTACGGTGAGACCATTACCTCCCTTTTTGAGCGATGCTGATTTATTGATGAAACAAACAACTGTTACAAATGAAAACAATGGAATGGTGCCTAAAATCTTCATCATCTCTGAAAATGACAATTTGCAAACAAAAGATTTTCAAGAATGGATAATTGAGACAACCGGTCCATATGCTAAAGTGAAAATGATCGAGGGTTCAGATCATATGGTCATGCTCTCCAAACCTACAAAACTTAGCTCTGAACTTCTAAACATTTCTTACAATTATTAA
Protein sequence

>Msa1271960

MEKFPKKISLAVFVTAFVISENLNFTSLLQENQRRLNSTQQDPPQLVFSDGPNSPPTGLLFGSKLLASNLYQLSPNEDLTLGSSLVRPHPIFNDEKLVLKETRVTKQRNGRVPKVFIISKGDIFIREDLQLWIIERTGPYDEVKVIKDSDHMVIANFVLIHGGSHGAWCWYKVATMLKSAGHNVTTIELAGSGINPIQVQEIHSTSKYYEPLMSFMESLPPNEKLILVGHSLGGVSTSVAMEKFPQKISVAVFVTAYVLSQNLSYPVVLQEQARRISSLMDTEFFFFDGPNKPATARLVGPKFMASKMYQLSPSEDLTLALSLVRPVPIYKDVELLLKETMVTNDRNGRVPKIFIISKSDNLITEDLQMLMIERSGPFEKVEVIEDSDHMVMFSKPKKLRKALCVDSWRHPWCMVLVYKIATELKSAGHKVTALDMAACGINPKQMQEVHSISEYHQPLMTFMESLPCEEKVVLVGRSLGGLSVSIAMENYPHKIFVAVFITATVVTQNLTYRAFLQERRRRIGSALDRQNFIIDGPDKAPILSSDGLDLLASRMYQLSPSQLKQIRFLYAGFDTCFISGTVRPLPPFLSDADLLMKQTTVTNENNGMVPKIFIISENDNLQTKDFQEWIIETTGPYAKVKMIEGSDHMVMLSKPTKLSSELLNISYNY*