AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0964400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0964400 MtrunA17_Chr6g0484641 88.506 174 17 2 1 174 1 171 1.21e-103 294
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0964400 AT1G73885.1 41.081 185 91 10 1 173 1 179 3.03e-27 101

Find 70 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATTTAGAGTTGATATT+TGG 0.189417 6_3:+90937246 Msa0964400:three_prime_UTR
TGCACCTAGATTGTAGTTTA+TGG 0.193554 6_3:-90936878 None:intergenic
TTGGATTCAAATGTTGAATA+TGG 0.194234 6_3:+90937265 Msa0964400:three_prime_UTR
TATACACTTTAGGCCTTGTT+TGG 0.272016 6_3:+90937426 Msa0964400:three_prime_UTR
GGAGAATGGTTGTGGATTCT+TGG 0.288850 6_3:+90934953 Msa0964400:CDS
GGTATGTTTGCTTGTATCTA+TGG 0.292996 6_3:-90937032 None:intergenic
GGTATTTCAACCACATTTCT+TGG 0.298799 6_3:-90934827 None:intergenic
AAAGAGCCTGATTTCTTTGA+AGG 0.327839 6_3:+90934902 Msa0964400:CDS
CTTATTGCACTCAATTTGTA+AGG 0.365549 6_3:+90937097 Msa0964400:three_prime_UTR
CAACAGTGGTTGTTGGTTGT+TGG 0.374252 6_3:-90934790 None:intergenic
TCTACCGACATATACACTTT+AGG 0.377356 6_3:+90937416 Msa0964400:three_prime_UTR
TGATTCACTTAAGTTCTGTT+TGG 0.377489 6_3:+90937374 Msa0964400:three_prime_UTR
TGGAATACTGTTGGGTTTGT+TGG 0.381813 6_3:+90934932 Msa0964400:CDS
ATGTCCGATTCAGATGTTTC+AGG 0.388886 6_3:-90936961 None:intergenic
AATATGGATAGTGGTTTGTA+TGG 0.398965 6_3:+90937281 Msa0964400:three_prime_UTR
ATCATCATCACTTTCTCTAA+TGG 0.401728 6_3:+90934616 Msa0964400:exon
CAAATGTTGAATATGGATAG+TGG 0.416010 6_3:+90937272 Msa0964400:three_prime_UTR
TCCTCATCAACAGTGGTTGT+TGG 0.422081 6_3:-90934797 None:intergenic
ATATCAACTCTAAATTTCAA+TGG 0.429258 6_3:-90937242 None:intergenic
GTTCTTCTTCTTGAAGAAGA+TGG 0.430048 6_3:-90934719 None:intergenic
ACAGACAATAACTATGTTTG+AGG 0.430526 6_3:-90934551 None:intergenic
AGGAAGTAATAACGTTTGTA+TGG 0.434209 6_3:-90934581 None:intergenic
TTCTTGAAGAAGATGGTTGT+AGG 0.434747 6_3:-90934712 None:intergenic
ATACACTTTAGGCCTTGTTT+GGG 0.443269 6_3:+90937427 Msa0964400:three_prime_UTR
TGAGGACCTTCAAAGAAATC+AGG 0.443462 6_3:-90934908 None:intergenic
TGATTGCAGGTACTCGGTGG+TGG 0.443641 6_3:+90936847 Msa0964400:intron
GGTTTGTTGGAGAATGGTTG+TGG 0.447045 6_3:+90934945 Msa0964400:CDS
TAAGGAAACTCCTGCATACA+AGG 0.456201 6_3:+90936909 Msa0964400:CDS
CTGTTGGGTTTGTTGGAGAA+TGG 0.461075 6_3:+90934939 Msa0964400:CDS
AGATGGTTGTAGGAGGGTGT+AGG 0.465259 6_3:-90934702 None:intergenic
GGTGTAGGGTGTTGTTGTGG+TGG 0.465718 6_3:-90934687 None:intergenic
GAAAGTGATGATGATGTTGT+AGG 0.471955 6_3:-90934608 None:intergenic
GATGGTTGTAGGAGGGTGTA+GGG 0.481591 6_3:-90934701 None:intergenic
GAGGGTGTAGGGTGTTGTTG+TGG 0.482266 6_3:-90934690 None:intergenic
GTCCTCAGTGGAATACTGTT+GGG 0.482795 6_3:+90934924 Msa0964400:CDS
ACAACCTGAAACATCTGAAT+CGG 0.485907 6_3:+90936957 Msa0964400:CDS
TTGTGGTGGTCTTGTTGTAG+AGG 0.490468 6_3:-90934673 None:intergenic
TGTTTGCTTGTATCTATGGA+TGG 0.492165 6_3:-90937028 None:intergenic
GTAGTTACATGCGGTGGTGC+AGG 0.492658 6_3:+90934647 Msa0964400:CDS
AGGAGCTACCTCTGTAGGAT+TGG 0.496936 6_3:-90936992 None:intergenic
GACTGAGATTCCTTGTATGC+AGG 0.497420 6_3:-90936919 None:intergenic
GCAGCCATAAACTACAATCT+AGG 0.509629 6_3:+90936874 Msa0964400:CDS
CCAGGAGGTCTCCATTCAAA+AGG 0.515241 6_3:-90934872 None:intergenic
TGCACCACCGCATGTAACTA+CGG 0.534977 6_3:-90934645 None:intergenic
AGATTTCTTCACGTTCAAGA+AGG 0.538426 6_3:+90934765 Msa0964400:CDS
GGTCCTCAGTGGAATACTGT+TGG 0.542352 6_3:+90934923 Msa0964400:CDS
TGAAGAAGATGGTTGTAGGA+GGG 0.544992 6_3:-90934708 None:intergenic
CAATCTTCATCAGAGTAAAA+CGG 0.547523 6_3:-90934848 None:intergenic
TCATCGTGATTGCAGGTACT+CGG 0.560112 6_3:+90936841 Msa0964400:intron
GAATGGTTGTGGATTCTTGG+TGG 0.562063 6_3:+90934956 Msa0964400:CDS
ACCAACAACCACTGTTGATG+AGG 0.563474 6_3:+90934796 Msa0964400:CDS
TTCTATTTCCTCATCAACAG+TGG 0.566937 6_3:-90934804 None:intergenic
CTATTAAGTTCTCCCAAACA+AGG 0.569571 6_3:-90937439 None:intergenic
GATTGCAGGTACTCGGTGGT+GGG 0.579381 6_3:+90936848 Msa0964400:intron
TGGATGGACTAGTTCAAACT+AGG 0.580396 6_3:-90937012 None:intergenic
TTGAAGAAGATGGTTGTAGG+AGG 0.580456 6_3:-90934709 None:intergenic
TCAGGCTCTTTGTAAGTACC+AGG 0.580767 6_3:-90934890 None:intergenic
CTGAGGCAAAATTGTCGTGT+TGG 0.595005 6_3:+90937161 Msa0964400:three_prime_UTR
ATTTCTTTGAAGGTCCTCAG+TGG 0.623902 6_3:+90934912 Msa0964400:CDS
GGAAATAGAACCAAGAAATG+TGG 0.624762 6_3:+90934817 Msa0964400:CDS
GATTCATATATGCTAAAACA+AGG 0.637122 6_3:-90937053 None:intergenic
ATGATGATGTTGTAGGAACA+AGG 0.639639 6_3:-90934601 None:intergenic
AAGGCCTAAAGTGTATATGT+CGG 0.651724 6_3:-90937420 None:intergenic
TTCACCGTAGTTACATGCGG+TGG 0.658676 6_3:+90934641 Msa0964400:CDS
ACTTAAGTGTATCAATTCTG+AGG 0.669053 6_3:+90937144 Msa0964400:three_prime_UTR
TCGTGATTGCAGGTACTCGG+TGG 0.679621 6_3:+90936844 Msa0964400:intron
GGCTCTTTGTAAGTACCAGG+AGG 0.691981 6_3:-90934887 None:intergenic
GCATTCACCGTAGTTACATG+CGG 0.701657 6_3:+90934638 Msa0964400:CDS
ATTCGAGTCCAATCCTACAG+AGG 0.715767 6_3:+90936984 Msa0964400:CDS
AACCCAACAGTATTCCACTG+AGG 0.795226 6_3:-90934926 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGTATAAGAAGAAATT+TGG + chr6_3:90936169-90936188 Msa0964400:intron 15.0%
!!! TATTTTTATGAACTTGTTTT+AGG - chr6_3:90936271-90936290 None:intergenic 15.0%
!! ATTGAAAAAAATATACAACA+CGG - chr6_3:90937190-90937209 None:intergenic 15.0%
!!! TTTAGCTTCTTACAAAAAAA+AGG + chr6_3:90935368-90935387 Msa0964400:intron 20.0%
!!! TTTTAGCATAAGAAGAAATT+TGG + chr6_3:90935644-90935663 Msa0964400:intron 20.0%
!!! AGTTAACTTTTGAGTTTATT+TGG + chr6_3:90935677-90935696 Msa0964400:intron 20.0%
!!! ACTTAGTTCATATTTTGAAT+TGG - chr6_3:90935853-90935872 None:intergenic 20.0%
!! ACATTTAAACAACATAGTTA+TGG - chr6_3:90936338-90936357 None:intergenic 20.0%
!!! ACTATGTTGTTTAAATGTTA+AGG + chr6_3:90936340-90936359 Msa0964400:intron 20.0%
!! ATAATATTGCAAAACAATTG+TGG - chr6_3:90936414-90936433 None:intergenic 20.0%
!!! TAATTTTATCTTCGAAAACT+TGG - chr6_3:90936506-90936525 None:intergenic 20.0%
!!! TAATCTATTTAGGAAGTTTT+TGG - chr6_3:90936665-90936684 None:intergenic 20.0%
!! AAAAACTTCCTAAATAGATT+AGG + chr6_3:90936664-90936683 Msa0964400:intron 20.0%
!! TTGAAAAAAATATACAACAC+GGG - chr6_3:90937189-90937208 None:intergenic 20.0%
!! ATATCAACTCTAAATTTCAA+TGG - chr6_3:90937245-90937264 None:intergenic 20.0%
!!! TGAAATTTAGAGTTGATATT+TGG + chr6_3:90937246-90937265 Msa0964400:three_prime_UTR 20.0%
!!! TACTATTTTGTTACAAATGT+TGG + chr6_3:90937338-90937357 Msa0964400:three_prime_UTR 20.0%
!! CTTGAGTATTAGAAGAATTT+TGG + chr6_3:90935086-90935105 Msa0964400:intron 25.0%
! ATAAGTTGTTTATCCAAACA+GGG - chr6_3:90935124-90935143 None:intergenic 25.0%
! AATAAGTTGTTTATCCAAAC+AGG - chr6_3:90935125-90935144 None:intergenic 25.0%
! AGTTAAAATGTTTCGATACA+AGG + chr6_3:90935228-90935247 Msa0964400:intron 25.0%
!!! TAAGTTGTTTTAACCCATTT+AGG + chr6_3:90935253-90935272 Msa0964400:intron 25.0%
!! TGTTTTCATAAGTATCTTGA+AGG + chr6_3:90935398-90935417 Msa0964400:intron 25.0%
!! GTTTTCATAAGTATCTTGAA+GGG + chr6_3:90935399-90935418 Msa0964400:intron 25.0%
! TACTACTAGGTTTCTATATT+AGG - chr6_3:90935599-90935618 None:intergenic 25.0%
! TCATAAGTAACTAGAACAAT+TGG + chr6_3:90935913-90935932 Msa0964400:intron 25.0%
! CATAAGTAACTAGAACAATT+GGG + chr6_3:90935914-90935933 Msa0964400:intron 25.0%
! TAGTATAAGAAGAAATTTGG+AGG + chr6_3:90936172-90936191 Msa0964400:intron 25.0%
! CGAAGATAAAATTACTTATG+TGG + chr6_3:90936512-90936531 Msa0964400:intron 25.0%
! GATTCATATATGCTAAAACA+AGG - chr6_3:90937056-90937075 None:intergenic 25.0%
!!! GTTTGAAATTTTCATTCACT+TGG - chr6_3:90937078-90937097 None:intergenic 25.0%
! TTGGATTCAAATGTTGAATA+TGG + chr6_3:90937265-90937284 Msa0964400:three_prime_UTR 25.0%
ACAGACAATAACTATGTTTG+AGG - chr6_3:90934554-90934573 None:intergenic 30.0%
AGGAAGTAATAACGTTTGTA+TGG - chr6_3:90934584-90934603 None:intergenic 30.0%
ATCATCATCACTTTCTCTAA+TGG + chr6_3:90934616-90934635 Msa0964400:exon 30.0%
CAATCTTCATCAGAGTAAAA+CGG - chr6_3:90934851-90934870 None:intergenic 30.0%
! TTTGTTTGTTGCTGAATTGT+TGG + chr6_3:90935023-90935042 Msa0964400:intron 30.0%
!!! TTGTTTTAACCCATTTAGGT+TGG + chr6_3:90935257-90935276 Msa0964400:intron 30.0%
TACTTGTGAGACTATTTGAA+CGG - chr6_3:90935459-90935478 None:intergenic 30.0%
GTATTGTGCGTGAATATTAA+TGG - chr6_3:90935516-90935535 None:intergenic 30.0%
CAAAATACACACATACTACT+AGG - chr6_3:90935612-90935631 None:intergenic 30.0%
GATCGTAATATTAGATCATG+TGG - chr6_3:90936001-90936020 None:intergenic 30.0%
TCTAATATTACGATCCATCT+TGG + chr6_3:90936006-90936025 Msa0964400:intron 30.0%
TCGCAAAATAGCAAAAGAAA+AGG - chr6_3:90936059-90936078 None:intergenic 30.0%
AGTTTCTGCTAATGAATTGT+AGG + chr6_3:90936092-90936111 Msa0964400:intron 30.0%
TATAAGAAGAAATTTGGAGG+AGG + chr6_3:90936175-90936194 Msa0964400:intron 30.0%
TGGTCAAATATAGTATCATG+CGG - chr6_3:90936394-90936413 None:intergenic 30.0%
GCAGAGCAATAAAATTTGAA+TGG - chr6_3:90936570-90936589 None:intergenic 30.0%
! GTTTGTTGAATTTAAGCACA+AGG + chr6_3:90936603-90936622 Msa0964400:intron 30.0%
CAAACATGCCTAATCTATTT+AGG - chr6_3:90936675-90936694 None:intergenic 30.0%
AATGTCTTGTCTAGAGAATT+TGG + chr6_3:90936765-90936784 Msa0964400:intron 30.0%
ATGTCTTGTCTAGAGAATTT+GGG + chr6_3:90936766-90936785 Msa0964400:intron 30.0%
CTTATTGCACTCAATTTGTA+AGG + chr6_3:90937097-90937116 Msa0964400:three_prime_UTR 30.0%
ACTTAAGTGTATCAATTCTG+AGG + chr6_3:90937144-90937163 Msa0964400:three_prime_UTR 30.0%
CAAATGTTGAATATGGATAG+TGG + chr6_3:90937272-90937291 Msa0964400:three_prime_UTR 30.0%
! AATATGGATAGTGGTTTGTA+TGG + chr6_3:90937281-90937300 Msa0964400:three_prime_UTR 30.0%
TGATTCACTTAAGTTCTGTT+TGG + chr6_3:90937374-90937393 Msa0964400:three_prime_UTR 30.0%
! ATGATGATGTTGTAGGAACA+AGG - chr6_3:90934604-90934623 None:intergenic 35.0%
! GAAAGTGATGATGATGTTGT+AGG - chr6_3:90934611-90934630 None:intergenic 35.0%
TTCTTGAAGAAGATGGTTGT+AGG - chr6_3:90934715-90934734 None:intergenic 35.0%
GTTCTTCTTCTTGAAGAAGA+TGG - chr6_3:90934722-90934741 None:intergenic 35.0%
AGATTTCTTCACGTTCAAGA+AGG + chr6_3:90934765-90934784 Msa0964400:CDS 35.0%
TTCTATTTCCTCATCAACAG+TGG - chr6_3:90934807-90934826 None:intergenic 35.0%
GGAAATAGAACCAAGAAATG+TGG + chr6_3:90934817-90934836 Msa0964400:CDS 35.0%
GGTATTTCAACCACATTTCT+TGG - chr6_3:90934830-90934849 None:intergenic 35.0%
! CGTTTTACTCTGATGAAGAT+TGG + chr6_3:90934849-90934868 Msa0964400:CDS 35.0%
!!! ATGAAGATTGGCCTTTTGAA+TGG + chr6_3:90934861-90934880 Msa0964400:CDS 35.0%
AAAGAGCCTGATTTCTTTGA+AGG + chr6_3:90934902-90934921 Msa0964400:CDS 35.0%
CAACTTATTGTGCAGCTTAT+AGG + chr6_3:90935136-90935155 Msa0964400:intron 35.0%
CTTGAAGGGTTTGTGATATA+CGG + chr6_3:90935413-90935432 Msa0964400:intron 35.0%
TTGAACGGAGTTGCAAAAAA+AGG - chr6_3:90935444-90935463 None:intergenic 35.0%
TCCATTAAGCGTATCCATTA+AGG + chr6_3:90935482-90935501 Msa0964400:intron 35.0%
CCATTAAGCGTATCCATTAA+GGG + chr6_3:90935483-90935502 Msa0964400:intron 35.0%
GCGTGAATATTAATGGTTGT+TGG - chr6_3:90935509-90935528 None:intergenic 35.0%
CACTTATCTAGGAACATGTT+TGG + chr6_3:90935709-90935728 Msa0964400:intron 35.0%
TAGGAACATGTTTGGATTGA+CGG + chr6_3:90935717-90935736 Msa0964400:intron 35.0%
TTTGAACTTTGACGAAAGCA+CGG + chr6_3:90935744-90935763 Msa0964400:intron 35.0%
AGTAACTAGAACAATTGGGT+TGG + chr6_3:90935918-90935937 Msa0964400:intron 35.0%
TAGATCATGTGGCAACAATT+AGG - chr6_3:90935990-90936009 None:intergenic 35.0%
ACTGCAGCACATAGATAAAT+GGG - chr6_3:90936299-90936318 None:intergenic 35.0%
TACTGCAGCACATAGATAAA+TGG - chr6_3:90936300-90936319 None:intergenic 35.0%
ATCTATGTGCTGCAGTATTA+AGG + chr6_3:90936303-90936322 Msa0964400:intron 35.0%
CTAGTCATATATCGACATGT+AGG + chr6_3:90936797-90936816 Msa0964400:intron 35.0%
TATAAGTTCATCGTGATTGC+AGG + chr6_3:90936834-90936853 Msa0964400:intron 35.0%
TGCACCTAGATTGTAGTTTA+TGG - chr6_3:90936881-90936900 None:intergenic 35.0%
! TCTAGGTGCATCAGATTTTA+AGG + chr6_3:90936891-90936910 Msa0964400:CDS 35.0%
ACAACCTGAAACATCTGAAT+CGG + chr6_3:90936957-90936976 Msa0964400:CDS 35.0%
TGTTTGCTTGTATCTATGGA+TGG - chr6_3:90937031-90937050 None:intergenic 35.0%
GGTATGTTTGCTTGTATCTA+TGG - chr6_3:90937035-90937054 None:intergenic 35.0%
!!! GTGTTTTGATCTGCTTTGTT+TGG + chr6_3:90937313-90937332 Msa0964400:three_prime_UTR 35.0%
TCTACCGACATATACACTTT+AGG + chr6_3:90937416-90937435 Msa0964400:three_prime_UTR 35.0%
AAGGCCTAAAGTGTATATGT+CGG - chr6_3:90937423-90937442 None:intergenic 35.0%
!! TATACACTTTAGGCCTTGTT+TGG + chr6_3:90937426-90937445 Msa0964400:three_prime_UTR 35.0%
!! ATACACTTTAGGCCTTGTTT+GGG + chr6_3:90937427-90937446 Msa0964400:three_prime_UTR 35.0%
TGAAGAAGATGGTTGTAGGA+GGG - chr6_3:90934711-90934730 None:intergenic 40.0%
TTGAAGAAGATGGTTGTAGG+AGG - chr6_3:90934712-90934731 None:intergenic 40.0%
TGAGGACCTTCAAAGAAATC+AGG - chr6_3:90934911-90934930 None:intergenic 40.0%
! ATTTCTTTGAAGGTCCTCAG+TGG + chr6_3:90934912-90934931 Msa0964400:CDS 40.0%
TGGAATACTGTTGGGTTTGT+TGG + chr6_3:90934932-90934951 Msa0964400:CDS 40.0%
!! GATTCTTGGTGGTCTTTTTG+CGG + chr6_3:90934967-90934986 Msa0964400:CDS 40.0%
GATGAAGATATGACCCTGTT+TGG + chr6_3:90935108-90935127 Msa0964400:intron 40.0%
! CCCTTAATGGATACGCTTAA+TGG - chr6_3:90935486-90935505 None:intergenic 40.0%
TAATGGTTGTTGGCCCTTAA+TGG - chr6_3:90935499-90935518 None:intergenic 40.0%
GGCGACATAATCACTTATCT+AGG + chr6_3:90935698-90935717 Msa0964400:intron 40.0%
AGGAACATGTTTGGATTGAC+GGG + chr6_3:90935718-90935737 Msa0964400:intron 40.0%
! GTTTAAAGCAGCGTTTCATC+AGG - chr6_3:90936441-90936460 None:intergenic 40.0%
TCTCTAGACAAGACATTCCT+TGG - chr6_3:90936762-90936781 None:intergenic 40.0%
GCAGCCATAAACTACAATCT+AGG + chr6_3:90936874-90936893 Msa0964400:CDS 40.0%
TAAGGAAACTCCTGCATACA+AGG + chr6_3:90936909-90936928 Msa0964400:CDS 40.0%
ATGTCCGATTCAGATGTTTC+AGG - chr6_3:90936964-90936983 None:intergenic 40.0%
!! TGGATGGACTAGTTCAAACT+AGG - chr6_3:90937015-90937034 None:intergenic 40.0%
GCATTCACCGTAGTTACATG+CGG + chr6_3:90934638-90934657 Msa0964400:CDS 45.0%
!! TTGTGGTGGTCTTGTTGTAG+AGG - chr6_3:90934676-90934695 None:intergenic 45.0%
! CAACAGTGGTTGTTGGTTGT+TGG - chr6_3:90934793-90934812 None:intergenic 45.0%
ACCAACAACCACTGTTGATG+AGG + chr6_3:90934796-90934815 Msa0964400:CDS 45.0%
TCCTCATCAACAGTGGTTGT+TGG - chr6_3:90934800-90934819 None:intergenic 45.0%
TCAGGCTCTTTGTAAGTACC+AGG - chr6_3:90934893-90934912 None:intergenic 45.0%
GTCCTCAGTGGAATACTGTT+GGG + chr6_3:90934924-90934943 Msa0964400:CDS 45.0%
AACCCAACAGTATTCCACTG+AGG - chr6_3:90934929-90934948 None:intergenic 45.0%
!! CTGTTGGGTTTGTTGGAGAA+TGG + chr6_3:90934939-90934958 Msa0964400:CDS 45.0%
!! GGTTTGTTGGAGAATGGTTG+TGG + chr6_3:90934945-90934964 Msa0964400:CDS 45.0%
GGAGAATGGTTGTGGATTCT+TGG + chr6_3:90934953-90934972 Msa0964400:CDS 45.0%
GAATGGTTGTGGATTCTTGG+TGG + chr6_3:90934956-90934975 Msa0964400:CDS 45.0%
!! TTAACCCATTTAGGTTGGCC+TGG + chr6_3:90935262-90935281 Msa0964400:intron 45.0%
GAATCGAACATGAGACCTTG+AGG - chr6_3:90935321-90935340 None:intergenic 45.0%
GTCTCATGTTCGATTCTCTC+CGG + chr6_3:90935325-90935344 Msa0964400:intron 45.0%
! TCTCCGGTGTCAATTTGAGT+GGG + chr6_3:90935341-90935360 Msa0964400:intron 45.0%
TAGCCCACTCAAATTGACAC+CGG - chr6_3:90935347-90935366 None:intergenic 45.0%
CTCTCACGCTCAACACTATT+GGG - chr6_3:90935538-90935557 None:intergenic 45.0%
! CAATAGTGTTGAGCGTGAGA+GGG + chr6_3:90935537-90935556 Msa0964400:intron 45.0%
GGAACATGTTTGGATTGACG+GGG + chr6_3:90935719-90935738 Msa0964400:intron 45.0%
TTTCTTGCCAAAATCGCGCT+GGG + chr6_3:90935802-90935821 Msa0964400:intron 45.0%
AATTGGCAGTGAGTCTGACA+TGG - chr6_3:90935836-90935855 None:intergenic 45.0%
! CCATCTTGGTTGTGTTTTCG+CGG + chr6_3:90936020-90936039 Msa0964400:intron 45.0%
CGTTCGTTTCTTTGATGCCA+AGG + chr6_3:90936742-90936761 Msa0964400:intron 45.0%
TCATCGTGATTGCAGGTACT+CGG + chr6_3:90936841-90936860 Msa0964400:intron 45.0%
GACTGAGATTCCTTGTATGC+AGG - chr6_3:90936922-90936941 None:intergenic 45.0%
ATTCGAGTCCAATCCTACAG+AGG + chr6_3:90936984-90937003 Msa0964400:CDS 45.0%
AAACTAGGAGCTACCTCTGT+AGG - chr6_3:90937000-90937019 None:intergenic 45.0%
CTGAGGCAAAATTGTCGTGT+TGG + chr6_3:90937161-90937180 Msa0964400:three_prime_UTR 45.0%
TTCACCGTAGTTACATGCGG+TGG + chr6_3:90934641-90934660 Msa0964400:CDS 50.0%
TGCACCACCGCATGTAACTA+CGG - chr6_3:90934648-90934667 None:intergenic 50.0%
! GATGGTTGTAGGAGGGTGTA+GGG - chr6_3:90934704-90934723 None:intergenic 50.0%
! AGATGGTTGTAGGAGGGTGT+AGG - chr6_3:90934705-90934724 None:intergenic 50.0%
CCAGGAGGTCTCCATTCAAA+AGG - chr6_3:90934875-90934894 None:intergenic 50.0%
! CCTTTTGAATGGAGACCTCC+TGG + chr6_3:90934872-90934891 Msa0964400:CDS 50.0%
GGCTCTTTGTAAGTACCAGG+AGG - chr6_3:90934890-90934909 None:intergenic 50.0%
GGTCCTCAGTGGAATACTGT+TGG + chr6_3:90934923-90934942 Msa0964400:CDS 50.0%
ACCACCAGGCCAACCTAAAT+GGG - chr6_3:90935269-90935288 None:intergenic 50.0%
TACCACCAGGCCAACCTAAA+TGG - chr6_3:90935270-90935289 None:intergenic 50.0%
!! TTGGCCTGGTGGTATTGACT+TGG + chr6_3:90935276-90935295 Msa0964400:intron 50.0%
!! TGGCCTGGTGGTATTGACTT+GGG + chr6_3:90935277-90935296 Msa0964400:intron 50.0%
!! GTGGTATTGACTTGGGACCT+GGG + chr6_3:90935284-90935303 Msa0964400:intron 50.0%
TCGAACATGAGACCTTGAGG+AGG - chr6_3:90935318-90935337 None:intergenic 50.0%
! CTCTCCGGTGTCAATTTGAG+TGG + chr6_3:90935340-90935359 Msa0964400:intron 50.0%
CCTCTCACGCTCAACACTAT+TGG - chr6_3:90935539-90935558 None:intergenic 50.0%
! CCAATAGTGTTGAGCGTGAG+AGG + chr6_3:90935536-90935555 Msa0964400:intron 50.0%
! TGAGAGGGTGTATGCGTGAA+GGG + chr6_3:90935552-90935571 Msa0964400:intron 50.0%
TATGCGTGAAGGGGCTTACT+GGG + chr6_3:90935562-90935581 Msa0964400:intron 50.0%
GTTTCTTGCCAAAATCGCGC+TGG + chr6_3:90935801-90935820 Msa0964400:intron 50.0%
! CAAATGACCCAGCGCGATTT+TGG - chr6_3:90935812-90935831 None:intergenic 50.0%
CCGCGAAAACACAACCAAGA+TGG - chr6_3:90936023-90936042 None:intergenic 50.0%
AGGAGCTACCTCTGTAGGAT+TGG - chr6_3:90936995-90937014 None:intergenic 50.0%
GTAGTTACATGCGGTGGTGC+AGG + chr6_3:90934647-90934666 Msa0964400:CDS 55.0%
!! GGTGTAGGGTGTTGTTGTGG+TGG - chr6_3:90934690-90934709 None:intergenic 55.0%
!! GAGGGTGTAGGGTGTTGTTG+TGG - chr6_3:90934693-90934712 None:intergenic 55.0%
!! ACCCATTTAGGTTGGCCTGG+TGG + chr6_3:90935265-90935284 Msa0964400:intron 55.0%
GGTCCCAAGTCAATACCACC+AGG - chr6_3:90935283-90935302 None:intergenic 55.0%
!! GGTGGTATTGACTTGGGACC+TGG + chr6_3:90935283-90935302 Msa0964400:intron 55.0%
! GTGAGAGGGTGTATGCGTGA+AGG + chr6_3:90935551-90935570 Msa0964400:intron 55.0%
! GAGAGGGTGTATGCGTGAAG+GGG + chr6_3:90935553-90935572 Msa0964400:intron 55.0%
GTATGCGTGAAGGGGCTTAC+TGG + chr6_3:90935561-90935580 Msa0964400:intron 55.0%
ATGCGTGAAGGGGCTTACTG+GGG + chr6_3:90935563-90935582 Msa0964400:intron 55.0%
TCGTGATTGCAGGTACTCGG+TGG + chr6_3:90936844-90936863 Msa0964400:intron 55.0%
! TGATTGCAGGTACTCGGTGG+TGG + chr6_3:90936847-90936866 Msa0964400:intron 55.0%
! GATTGCAGGTACTCGGTGGT+GGG + chr6_3:90936848-90936867 Msa0964400:intron 55.0%
! TTGAGGAGGAGCACACTCCC+AGG - chr6_3:90935304-90935323 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTCA+AGG + chr6_3:90935303-90935322 Msa0964400:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 90934534 90937457 90934534 ID=Msa0964400;Name=Msa0964400
chr6_3 mRNA 90934534 90937457 90934534 ID=Msa0964400-mRNA-1;Parent=Msa0964400;Name=Msa0964400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=101|1|1|1|1|1|2|431|174
chr6_3 exon 90934534 90934988 90934534 ID=Msa0964400-mRNA-1:exon:16400;Parent=Msa0964400-mRNA-1
chr6_3 exon 90936856 90937457 90936856 ID=Msa0964400-mRNA-1:exon:16401;Parent=Msa0964400-mRNA-1
chr6_3 five_prime_UTR 90934534 90934634 90934534 ID=Msa0964400-mRNA-1:five_prime_utr;Parent=Msa0964400-mRNA-1
chr6_3 CDS 90934635 90934988 90934635 ID=Msa0964400-mRNA-1:cds;Parent=Msa0964400-mRNA-1
chr6_3 CDS 90936856 90937026 90936856 ID=Msa0964400-mRNA-1:cds;Parent=Msa0964400-mRNA-1
chr6_3 three_prime_UTR 90937027 90937457 90937027 ID=Msa0964400-mRNA-1:three_prime_utr;Parent=Msa0964400-mRNA-1
Gene Sequence

>Msa0964400

ATGGCATTCACCGTAGTTACATGCGGTGGTGCAGGAATCCTCTACAACAAGACCACCACAACAACACCCTACACCCTCCTACAACCATCTTCTTCAAGAAGAAGAACACTTCACATAGTTTCAGCTAAGAAGATTTCTTCACGTTCAAGAAGGAACCAACAACCAACAACCACTGTTGATGAGGAAATAGAACCAAGAAATGTGGTTGAAATACCGTTTTACTCTGATGAAGATTGGCCTTTTGAATGGAGACCTCCTGGTACTTACAAAGAGCCTGATTTCTTTGAAGGTCCTCAGTGGAATACTGTTGGGTTTGTTGGAGAATGGTTGTGGATTCTTGGTGGTCTTTTTGCGGTACTCGGTGGTGGGTATGCAGCCATAAACTACAATCTAGGTGCATCAGATTTTAAGGAAACTCCTGCATACAAGGAATCTCAGTCTCAAGAACTTTTAGAACAACCTGAAACATCTGAATCGGACATATTCGAGTCCAATCCTACAGAGGTAGCTCCTAGTTTGAACTAG

Protein sequence

>Msa0964400

MAFTVVTCGGAGILYNKTTTTTPYTLLQPSSSRRRTLHIVSAKKISSRSRRNQQPTTTVDEEIEPRNVVEIPFYSDEDWPFEWRPPGTYKEPDFFEGPQWNTVGFVGEWLWILGGLFAVLGGGYAAINYNLGASDFKETPAYKESQSQELLEQPETSESDIFESNPTEVAPSLN*