AlfalfaGEDB | Msa0048380

M. sativa cultivar zhongmu-4 / Msa0048380

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF19160.3

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0048380	sp\|O04086\|Y1105_ARATH	42.708	192	103	4	25	210	26	216	2.35e-37	140

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0048380	A0A396JI08	93.365	211	13	1	1	211	46	255	3.45e-142	406

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa0048380	0.819846	9.373134e-53	-8.615850e-47
Msa0001510	Msa0048380	-0.822323	2.518902e-53	-8.615850e-47
Msa0002690	Msa0048380	-0.809156	2.174952e-50	-8.615850e-47
Msa0002880	Msa0048380	0.806654	7.407251e-50	-8.615850e-47
Msa0004180	Msa0048380	-0.861532	9.603272e-64	-8.615850e-47
Msa0004900	Msa0048380	0.814080	1.848621e-51	-8.615850e-47
Msa0004940	Msa0048380	0.829450	5.113348e-55	-8.615850e-47
Msa0004990	Msa0048380	0.822740	2.015467e-53	-8.615850e-47
Msa0005560	Msa0048380	0.820099	8.204308e-53	-8.615850e-47
Msa0006080	Msa0048380	0.830776	2.426663e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0048380	MtrunA17_Chr1g0159601	93.365	211	13	1	1	211	46	255	6.64e-146	406
Msa0048380	MtrunA17_Chr1g0159611	78.676	136	29	0	1	136	46	181	4.52e-75	236
Msa0048380	MtrunA17_Chr8g0380681	45.536	224	102	6	4	209	2	223	8.86e-53	182
Msa0048380	MtrunA17_Chr8g0380681	39.000	200	109	6	18	205	691	889	8.50e-37	136
Msa0048380	MtrunA17_Chr2g0277731	43.750	208	108	4	9	209	12	217	4.70e-51	174
Msa0048380	MtrunA17_Chr4g0039131	42.969	128	70	2	86	211	1	127	6.56e-31	110

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0048380	AT1G11050.1	42.708	192	103	4	25	210	26	216	2.39e-38	140

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Find 36 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGAAGGGACTAACGA+AGG	0.740560	1_2:-680044	None:intergenic
AACAATGTTGTGTGTCAATT+GGG	0.477153	1_2:-679881	None:intergenic
AAGAAGGGACTAACGAAGGT+TGG	0.536160	1_2:-680040	None:intergenic
ACAAACAACTCAAGCTGCGC+AGG	0.551790	1_2:+680089	Msa0048380:CDS
AGAAGGAGTAGCTATGATAA+GGG	0.514017	1_2:-679784	None:intergenic
AGTATACAACTAGCTGTAGC+AGG	0.563837	1_2:-680338	None:intergenic
ATTGAGTTGTGGAAACAAGA+AGG	0.531475	1_2:-680056	None:intergenic
CAACAATGTTGTGTGTCAAT+TGG	0.393976	1_2:-679882	None:intergenic
CAATCTCTTCTTAGTCTCTT+TGG	0.194083	1_2:+679906	Msa0048380:CDS
CAGAAGGAGTAGCTATGATA+AGG	0.380662	1_2:-679785	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAATGTTGTGTGTCAATT+GGG	-	chr1_2:679884-679903	None:intergenic	30.0%
GTATCACAAACATCAAAGAT+TGG	+	chr1_2:680111-680130	Msa0048380:CDS	30.0%
AAAGATTGGAAGCAAAAAGT+TGG	+	chr1_2:680125-680144	Msa0048380:CDS	30.0%
AGAAGGAGTAGCTATGATAA+GGG	-	chr1_2:679787-679806	None:intergenic	35.0%
CAACAATGTTGTGTGTCAAT+TGG	-	chr1_2:679885-679904	None:intergenic	35.0%
CAATCTCTTCTTAGTCTCTT+TGG	+	chr1_2:679906-679925	Msa0048380:CDS	35.0%
GAAAGAGTGAAGTTTCTTTC+AGG	-	chr1_2:679950-679969	None:intergenic	35.0%
CCTTTAGACACTTCTTGTAA+AGG	+	chr1_2:680158-680177	Msa0048380:CDS	35.0%
TAGCTATGATAAGGGTGAAG+AGG	-	chr1_2:679779-679798	None:intergenic	40.0%
CAGAAGGAGTAGCTATGATA+AGG	-	chr1_2:679788-679807	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	679747	680382	679747	ID=Msa0048380;Name=Msa0048380
chr1_2	mRNA	679747	680382	679747	ID=Msa0048380-mRNA-1;Parent=Msa0048380;Name=Msa0048380-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|211
chr1_2	exon	679747	680382	679747	ID=Msa0048380-mRNA-1:exon:123;Parent=Msa0048380-mRNA-1
chr1_2	CDS	679747	680382	679747	ID=Msa0048380-mRNA-1:cds;Parent=Msa0048380-mRNA-1

Gene Sequence

>Msa0048380

ATGGATAACAAAGCAGTGTTCCTTCTCCTCCTCTTCACCCTTATCATAGCTACTCCTTCTGCTTCTGCAGTATCATGTCCTATGGATCTCAGCTATGTTGAGACCTTTCCATGGGACACATCAACCTGCAGAGACCCAATTGACACACAACATTGTTGTCAATCTCTTCTTAGTCTCTTTGGCATAGGACTTGCAAAACACCTGAAAGAAACTTCACTCTTTCAACTCCCTAATAAAAACACTTTAAAATCTTGCTTACAAGATTTCAAACTCAAACTTTCATGCTTAAAGATCCAACCTTCGTTAGTCCCTTCTTGTTTCCACAACTCAATTCAATTTGTCACAAACAACTCAAGCTGCGCAGGTATCACAAACATCAAAGATTGGAAGCAAAAAGTTGGTAGAATTAGCCCTTTAGACACTTCTTGTAAAGGTGATTTGAAATCGGACACTAGTTGCAGCACGTGCACTAATGCTGGTTTCAAAGTCACTTCTCAGCTTACAAGTATTGATCCAAAAAATGCAACTAAGTGCTTTTTCTTTTCAGTTTTATATGCTGTTGGTATTGTGAATCATTTTGGTCCTACAGATCCTGCTACAGCTAGTTGTATACTTGGTATCCCGCTTAGAAGATGA

Protein sequence

>Msa0048380

MDNKAVFLLLLFTLIIATPSASAVSCPMDLSYVETFPWDTSTCRDPIDTQHCCQSLLSLFGIGLAKHLKETSLFQLPNKNTLKSCLQDFKLKLSCLKIQPSLVPSCFHNSIQFVTNNSSCAGITNIKDWKQKVGRISPLDTSCKGDLKSDTSCSTCTNAGFKVTSQLTSIDPKNATKCFFFSVLYAVGIVNHFGPTDPATASCILGIPLRR*