AlfalfaGEDB | Msa0770290

M. sativa cultivar zhongmu-4 / Msa0770290

KEGG: -
GO: GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402
PFAM: PF14226.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0770290	RHN55876.1	75.625	160	8	3	1	129	1	160	2.81e-70	225

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0770290	sp\|Q39224\|SRG1_ARATH	38.788	165	67	4	2	132	7	171	4.83e-28	108

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0770290	A0A396HR89	75.625	160	8	3	1	129	1	160	1.34e-70	225

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005050	Msa0770290	0.810808	9.586106e-51	-8.615850e-47
Msa0006980	Msa0770290	0.800518	1.388099e-48	-8.615850e-47
Msa0019600	Msa0770290	0.830639	2.621820e-55	-8.615850e-47
Msa0050040	Msa0770290	0.810634	1.045632e-50	-8.615850e-47
Msa0053110	Msa0770290	0.813152	2.958361e-51	-8.615850e-47
Msa0098440	Msa0770290	0.816421	5.579210e-52	-8.615850e-47
Msa0102990	Msa0770290	0.809788	1.591405e-50	-8.615850e-47
Msa0124130	Msa0770290	0.809331	1.994914e-50	-8.615850e-47
Msa0130010	Msa0770290	0.804750	1.859721e-49	-8.615850e-47
Msa0141120	Msa0770290	0.809643	1.710005e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0770290	MtrunA17_Chr5g0423211	75.625	160	8	3	1	129	1	160	2.59e-74	225
Msa0770290	MtrunA17_Chr5g0420901	66.038	159	24	2	1	129	1	159	2.96e-66	204
Msa0770290	MtrunA17_Chr5g0420891	64.151	159	27	2	1	129	1	159	3.27e-65	196
Msa0770290	MtrunA17_Chr5g0421091	59.873	157	33	2	3	129	2	158	3.00e-58	184
Msa0770290	MtrunA17_Chr5g0420941	58.599	157	35	2	3	129	2	158	3.55e-57	181
Msa0770290	MtrunA17_Chr5g0423221	51.572	159	46	3	1	129	27	184	3.08e-45	151
Msa0770290	MtrunA17_Chr5g0421101	49.686	159	49	3	1	129	3	160	3.06e-44	148
Msa0770290	MtrunA17_Chr5g0421041	49.359	156	48	3	3	129	5	158	3.48e-44	148
Msa0770290	MtrunA17_Chr5g0423201	47.134	157	52	3	4	129	5	161	7.81e-41	139
Msa0770290	MtrunA17_Chr5g0423251	47.742	155	51	2	5	129	6	160	1.18e-40	139

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0770290	AT1G17020.1	38.788	165	67	4	2	132	7	171	4.91e-29	108
Msa0770290	AT1G17010.1	38.650	163	65	4	5	132	10	172	4.42e-28	106
Msa0770290	AT4G25300.1	36.364	165	71	3	2	132	6	170	1.09e-27	105
Msa0770290	AT1G78550.2	45.455	88	48	0	45	132	6	93	8.51e-23	90.9
Msa0770290	AT1G78550.1	45.349	86	47	0	47	132	86	171	4.17e-22	90.5
Msa0770290	AT4G25310.2	47.674	86	42	1	47	132	85	167	5.77e-21	87.0
Msa0770290	AT4G25310.1	47.674	86	42	1	47	132	85	167	7.48e-21	87.0
Msa0770290	AT2G38240.1	30.667	150	73	3	11	129	11	160	4.02e-15	71.2
Msa0770290	AT3G21420.1	40.506	79	47	0	47	125	90	168	2.38e-11	60.5

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Find 42 sgRNAs with CRISPR-Local

Find 933 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACAAGAGGAAATGCAG+GGG	0.719462	5_2:+40761144	Msa0770290:CDS
AAATGGAATAAATACCTCAA+TGG	0.520334	5_2:-40761284	None:intergenic
AAATTAAAGCTAATCAACTA+TGG	0.417354	5_2:+40761035	Msa0770290:intron
AAGTGTTAGATACAAGAATA+GGG	0.468845	5_2:-40759103	None:intergenic
AATAAATACCTCAATGGTTG+TGG	0.437116	5_2:-40761278	None:intergenic
AATCAGTCTCATCAAATGGC+TGG	0.572592	5_2:+40758990	None:intergenic
ACAAGAATAGGGTCTTGATT+TGG	0.392068	5_2:-40759092	None:intergenic
ACAGATGGGAAAGATAGTGA+AGG	0.615025	5_2:-40770931	Msa0770300:CDS
ACAGGCTTATGTTTCTTCAG+AGG	0.580064	5_2:+40761172	Msa0770290:CDS
ACCTTCCAATAGAAGAGAAA+AGG	0.498469	5_2:+40761111	Msa0770290:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTACTAAGATCGATTACT+GGG	-	chr5_2:40759142-40759161	None:intergenic	30.0%
AGTTTACTAAGATCGATTAC+TGG	-	chr5_2:40759143-40759162	None:intergenic	30.0%
TTCGTCCCCATTAAAAAAAA+TGG	+	chr5_2:40759310-40759329	Msa0770290:intron	30.0%
ATAAGTGGATCCTTCTTTAA+GGG	+	chr5_2:40759496-40759515	Msa0770290:intron	30.0%
CAAAATCAGCTAATCAAAAG+AGG	+	chr5_2:40759623-40759642	Msa0770290:intron	30.0%
TTGTAATTTCTCTGCATTCA+GGG	-	chr5_2:40759918-40759937	None:intergenic	30.0%
TTTGTAATTTCTCTGCATTC+AGG	-	chr5_2:40759919-40759938	None:intergenic	30.0%
AATCACTTTAGTCCTTGAAT+AGG	-	chr5_2:40760125-40760144	None:intergenic	30.0%
TAAGGCCTTCATTATCTATA+AGG	-	chr5_2:40760153-40760172	None:intergenic	30.0%
TATAGATAATGAAGGCCTTA+AGG	+	chr5_2:40760153-40760172	Msa0770290:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	40759005	40770962	40759005	ID=Msa0770290;Name=Msa0770290
chr5_2	mRNA	40759005	40770962	40759005	ID=Msa0770290-mRNA-1;Parent=Msa0770290;Name=Msa0770290-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0\|0\|0\|0.66\|1\|1\|3\|0\|144
chr5_2	exon	40759005	40759142	40759005	ID=Msa0770290-mRNA-1:exon:12929;Parent=Msa0770290-mRNA-1
chr5_2	exon	40761044	40761291	40761044	ID=Msa0770290-mRNA-1:exon:12930;Parent=Msa0770290-mRNA-1
chr5_2	exon	40770914	40770962	40770914	ID=Msa0770290-mRNA-1:exon:12931;Parent=Msa0770290-mRNA-1
chr5_2	CDS	40759005	40759142	40759005	ID=Msa0770290-mRNA-1:cds;Parent=Msa0770290-mRNA-1
chr5_2	CDS	40761044	40761291	40761044	ID=Msa0770290-mRNA-1:cds;Parent=Msa0770290-mRNA-1
chr5_2	CDS	40770914	40770962	40770914	ID=Msa0770290-mRNA-1:cds;Parent=Msa0770290-mRNA-1

Gene Sequence

>Msa0770290

ATGGCTGGCACTTCTGTTGTCCTGGCACCTTCAGTCCAACAGTTGGAAAAGGAAGGCATTGAAAAAGTTCCAAAACAATATCTTCAACCAAATCAAGACCCTATTCTTGTATCTAACACTTCCTTACCACAACTCCCACTAATCAACTATGGAGTCAACCCTTCACTAGTAGAAAATGTGAAAATTGGTATTCAACAATTCTTCAACCTTCCAATAGAAGAGAAAAGGAAGCTTTGGCAAACACAAGAGGAAATGCAGGGGTTTGGACAGGCTTATGTTTCTTCAGAGGATGAAAAGCTAAGATGGGGAGATATGTTCTTCGTCAGAACTTTCCCTTTGCACATAAGGCACCCCAATCTAATTCCTTTGATCCCACAACCATTGAGACTTCCTCTTGGCCAACCCTTCACTATCTTTCCCATCTGTTTTGTTTAA

Protein sequence

>Msa0770290

MAGTSVVLAPSVQQLEKEGIEKVPKQYLQPNQDPILVSNTSLPQLPLINYGVNPSLVENVKIGIQQFFNLPIEEKRKLWQTQEEMQGFGQAYVSSEDEKLRWGDMFFVRTFPLHIRHPNLIPLIPQPLRLPLGQPFTIFPICFV*