AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0594180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0594180 MtrunA17_Chr4g0012951 84.112 107 17 0 1 107 1 107 8.27e-61 182
Msa0594180 MtrunA17_Chr4g0012961 84.112 107 17 0 1 107 1 107 1.43e-59 179
Msa0594180 MtrunA17_Chr4g0012991 84.112 107 17 0 1 107 56 162 3.30e-59 179
Msa0594180 MtrunA17_Chr4g0013001 83.178 107 18 0 1 107 1 107 8.28e-59 177
Msa0594180 MtrunA17_Chr4g0013261 59.483 116 44 2 1 114 1 115 1.61e-40 130
Msa0594180 MtrunA17_Chr4g0013251 59.483 116 44 2 1 114 1 115 1.32e-39 128
Msa0594180 MtrunA17_Chr7g0244691 46.018 113 58 2 4 114 7 118 7.86e-29 101
Msa0594180 MtrunA17_Chr4g0012901 48.598 107 53 2 1 105 5 111 1.18e-28 100
Msa0594180 MtrunA17_Chr4g0013211 45.455 110 60 0 1 110 1 110 5.79e-28 99.0
Msa0594180 MtrunA17_Chr7g0244831 46.226 106 53 3 12 114 14 118 9.72e-27 95.9
Msa0594180 MtrunA17_Chr7g0244641 41.284 109 62 2 4 110 7 115 1.10e-25 93.2
Msa0594180 MtrunA17_Chr7g0244841 42.478 113 61 3 4 114 7 117 1.12e-25 93.2
Msa0594180 MtrunA17_Chr4g0012891 42.735 117 60 3 5 114 9 125 4.44e-25 92.0
Msa0594180 MtrunA17_Chr7g0244671 38.739 111 66 1 4 112 7 117 2.86e-24 90.5
Msa0594180 MtrunA17_Chr2g0309241 42.056 107 60 2 1 106 1 106 3.70e-23 86.7
Msa0594180 MtrunA17_Chr4g0012931 40.708 113 64 1 1 110 1 113 2.07e-22 85.5
Msa0594180 MtrunA17_Chr7g0244811 38.835 103 61 1 1 101 5 107 2.05e-20 79.7
Msa0594180 MtrunA17_Chr4g0012921 40.708 113 64 2 1 110 1 113 1.38e-19 77.8
Msa0594180 MtrunA17_Chr7g0244741 39.474 114 66 1 4 114 7 120 4.32e-18 73.9
Msa0594180 MtrunA17_Chr7g0244681 40.367 109 62 2 4 110 7 114 7.40e-18 73.2
Msa0594180 MtrunA17_Chr7g0233431 31.776 107 72 1 5 110 20 126 1.12e-16 70.5
Msa0594180 MtrunA17_Chr3g0107481 36.036 111 70 1 5 114 3 113 1.57e-16 69.7
Msa0594180 MtrunA17_Chr7g0244761 37.615 109 65 3 4 110 32 139 2.98e-15 67.4
Msa0594180 MtrunA17_Chr7g0244821 37.615 109 64 4 4 110 7 113 4.05e-15 66.6
Msa0594180 MtrunA17_Chr7g0244791 36.036 111 64 2 4 110 12 119 7.78e-15 65.5
Msa0594180 MtrunA17_Chr1g0165761 40.741 108 61 2 5 110 8 114 1.31e-14 65.1
Msa0594180 MtrunA17_Chr7g0244721 33.945 109 70 1 4 110 7 115 3.13e-14 63.9
Msa0594180 MtrunA17_Chr3g0105001 36.111 108 61 4 4 104 7 113 4.86e-14 63.5
Msa0594180 MtrunA17_Chr7g0244661 38.053 113 62 3 4 114 7 113 7.09e-14 62.8
Msa0594180 MtrunA17_Chr3g0104971 36.449 107 60 4 4 103 7 112 1.14e-13 62.4
Msa0594180 MtrunA17_Chr3g0104981 36.449 107 60 4 4 103 7 112 1.19e-13 62.4
Msa0594180 MtrunA17_Chr3g0105021 36.449 107 60 4 4 103 7 112 1.51e-13 62.4
Msa0594180 MtrunA17_Chr3g0105011 36.449 107 60 4 4 103 7 112 1.51e-13 62.4
Msa0594180 MtrunA17_Chr7g0244751 33.929 112 73 1 4 114 7 118 2.57e-13 61.6
Msa0594180 MtrunA17_Chr3g0104951 35.514 107 61 4 4 103 7 112 3.23e-13 61.2
Msa0594180 MtrunA17_Chr3g0104931 35.514 107 61 4 4 103 7 112 3.23e-13 61.2
Msa0594180 MtrunA17_Chr3g0104941 35.514 107 61 4 4 103 7 112 3.23e-13 61.2
Msa0594180 MtrunA17_Chr3g0104991 38.235 102 55 4 9 103 12 112 3.44e-13 61.2
Msa0594180 MtrunA17_Chr3g0104921 36.893 103 57 4 9 104 2 103 4.60e-13 60.8
Msa0594180 MtrunA17_Chr3g0104911 36.893 103 57 4 9 104 2 103 4.60e-13 60.8
Msa0594180 MtrunA17_Chr3g0104901 35.398 113 62 5 1 103 1 112 6.21e-13 60.8
Msa0594180 MtrunA17_Chr3g0105031 37.143 105 58 4 9 106 2 105 7.27e-13 60.1
Msa0594180 MtrunA17_Chr3g0105041 35.514 107 61 4 4 103 7 112 1.02e-12 60.1
Msa0594180 MtrunA17_Chr3g0104961 35.185 108 62 4 4 104 7 113 1.87e-12 59.3
Msa0594180 MtrunA17_Chr3g0095931 31.683 101 63 3 10 105 13 112 2.39e-12 58.9
Msa0594180 MtrunA17_Chr3g0095991 32.710 107 64 4 4 103 7 112 3.23e-12 58.9
Msa0594180 MtrunA17_Chr3g0101431 32.759 116 72 3 4 114 6 120 3.60e-12 58.5
Msa0594180 MtrunA17_Chr3g0095951 32.710 107 64 4 4 103 7 112 7.44e-12 57.8
Msa0594180 MtrunA17_Chr3g0096021 32.710 107 64 4 4 103 7 112 9.52e-12 57.4
Msa0594180 MtrunA17_Chr3g0096031 32.710 107 64 4 4 103 7 112 1.46e-11 57.0
Msa0594180 MtrunA17_Chr7g0244731 48.438 64 30 2 25 86 57 119 2.01e-11 57.8
Msa0594180 MtrunA17_Chr3g0094521 29.358 109 71 4 10 115 18 123 2.14e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0594180 AT5G59320.1 55.046 109 47 1 6 114 8 114 3.32e-36 120
Msa0594180 AT2G38540.1 62.963 108 34 6 4 107 5 110 3.50e-34 115
Msa0594180 AT5G59310.1 57.000 100 38 2 8 107 10 104 2.40e-32 110
Msa0594180 AT2G38530.1 57.018 114 45 4 4 114 5 117 4.29e-30 104
Msa0594180 AT2G15050.3 49.038 104 49 3 4 103 5 108 2.15e-27 98.2
Msa0594180 AT2G15050.2 49.038 104 49 3 4 103 5 108 2.28e-27 97.8
Msa0594180 AT3G51600.1 51.754 114 51 4 4 114 5 117 2.82e-27 97.4
Msa0594180 AT2G15050.1 49.038 104 49 3 4 103 5 108 3.39e-27 97.4
Msa0594180 AT3G51590.1 45.098 102 53 3 6 106 8 107 4.30e-25 92.0
Msa0594180 AT4G33355.1 47.253 91 48 0 24 114 28 118 4.30e-22 84.3
Msa0594180 AT4G33355.2 53.846 78 36 0 24 101 28 105 8.34e-22 83.6
Msa0594180 AT5G01870.1 40.708 113 59 4 9 114 4 115 4.98e-20 79.0
Msa0594180 AT3G08770.1 44.318 88 45 3 22 106 18 104 1.04e-16 70.5
Msa0594180 AT3G08770.2 44.318 88 45 3 22 106 18 104 1.33e-16 70.5
Msa0594180 AT2G18370.1 37.755 98 59 2 6 102 7 103 1.77e-16 70.1

Find 37 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGCTGCTCGTGCTATTTC+TGG 0.185000 4_2:-21337609 Msa0594180:CDS
TTATTCTTAATAGCGTTAAA+TGG 0.265351 4_2:+21337048 None:intergenic
ATGATGTGGCTCCAAGATTA+TGG 0.343812 4_2:-21337097 Msa0594180:CDS
CCATGCATTGGATATCTTAG+AGG 0.354250 4_2:-21337732 Msa0594180:CDS
CCATCTCCAGCATGCTGTGC+TGG 0.375274 4_2:-21337699 Msa0594180:CDS
TTGAGCAGTTACCATAATCT+TGG 0.379849 4_2:+21337086 None:intergenic
TTGCAAGCAGCCTGACGGTC+AGG 0.421711 4_2:+21337642 None:intergenic
ATCTCATGTGGAACAGTAAC+TGG 0.426922 4_2:-21337765 Msa0594180:CDS
ATGTTAACACCGCATTTGCC+AGG 0.438055 4_2:+21337558 None:intergenic
CACCACCACGCCTGACCGTC+AGG 0.443141 4_2:-21337652 Msa0594180:CDS
ACGGTCAGGCGTGGTGGTGG+CGG 0.445777 4_2:+21337656 None:intergenic
GTCAGGCGTGGTGGTGGCGG+CGG 0.446691 4_2:+21337659 None:intergenic
GTGCATGATTGTTGCACCTA+TGG 0.467928 4_2:-21337799 Msa0594180:CDS
TTCACTCCAGCACAGCATGC+TGG 0.485039 4_2:+21337693 None:intergenic
AACACAGCTGCTGGTCTCCC+TGG 0.491804 4_2:-21337576 Msa0594180:CDS
GGTGCTCTTTCTCCATGCAT+TGG 0.503884 4_2:-21337744 Msa0594180:CDS
GGATATCTTAGAGGTGGTGC+TGG 0.504129 4_2:-21337723 Msa0594180:CDS
GTAGAGGTACTGATCTTGTA+AGG 0.508470 4_2:+21337534 None:intergenic
CAAGTCTTGTACAAGAGGAT+AGG 0.509944 4_2:+21336993 None:intergenic
CTGACGGTCAGGCGTGGTGG+TGG 0.517462 4_2:+21337653 None:intergenic
TTGTCATGCTTACAGCATCA+GGG 0.542932 4_2:-21337130 Msa0594180:intron
AAGTCTTGTACAAGAGGATA+GGG 0.543443 4_2:+21336994 None:intergenic
TGATACAAGTCTTGTACAAG+AGG 0.547117 4_2:+21336988 None:intergenic
CCAGCACAGCATGCTGGAGA+TGG 0.550113 4_2:+21337699 None:intergenic
TTGAATGCTAACACAGCTGC+TGG 0.551046 4_2:-21337585 Msa0594180:CDS
ATTAAGAATAATGAGAGTGA+TGG 0.561901 4_2:-21337036 Msa0594180:three_prime_UTR
AGCAGCCTGACGGTCAGGCG+TGG 0.565783 4_2:+21337647 None:intergenic
AGCCTGACGGTCAGGCGTGG+TGG 0.576862 4_2:+21337650 None:intergenic
GAGATTGCAGCATCTGCCAT+AGG 0.577723 4_2:+21337783 None:intergenic
GCTGGTCTCCCTGGCAAATG+CGG 0.582311 4_2:-21337567 Msa0594180:CDS
CCTCTAAGATATCCAATGCA+TGG 0.598915 4_2:+21337732 None:intergenic
TGTTAACACCGCATTTGCCA+GGG 0.602365 4_2:+21337559 None:intergenic
TGCATTGGATATCTTAGAGG+TGG 0.623803 4_2:-21337729 Msa0594180:CDS
AGCAGTTGCAAGCAGCCTGA+CGG 0.624471 4_2:+21337637 None:intergenic
ATAAGAGTAATGAGATAACA+AGG 0.648698 4_2:+21336931 None:intergenic
GCAGATGCTGCAATCTCATG+TGG 0.654132 4_2:-21337777 Msa0594180:CDS
AGGGCTTGAAGATAATGATG+TGG 0.674194 4_2:-21337111 Msa0594180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATCATTCTTTTAATTTT+AGG - chr4_2:21337411-21337430 Msa0594180:intron 10.0%
!!! TAAATCATTCTTTTAATTTT+AGG - chr4_2:21337411-21337430 Msa0594180:intron 10.0%
!!! AAAATTTAGTTGTTTAACTT+TGG + chr4_2:21337368-21337387 None:intergenic 15.0%
!!! TATAAATTCTTTTTTGCTTA+AGG - chr4_2:21337484-21337503 Msa0594180:intron 15.0%
!!! TTTATGTTATTCAATGTTTT+TGG - chr4_2:21337539-21337558 Msa0594180:intron 15.0%
!!! TTATGTTATTCAATGTTTTT+GGG - chr4_2:21337540-21337559 Msa0594180:intron 15.0%
!!! AAAATTTAGTTGTTTAACTT+TGG + chr4_2:21337368-21337387 None:intergenic 15.0%
!!! TATAAATTCTTTTTTGCTTA+AGG - chr4_2:21337484-21337503 Msa0594180:intron 15.0%
!!! TTTATGTTATTCAATGTTTT+TGG - chr4_2:21337539-21337558 Msa0594180:intron 15.0%
!!! TTATGTTATTCAATGTTTTT+GGG - chr4_2:21337540-21337559 Msa0594180:intron 15.0%
!!! TTACGAATCTACTTTTTTAT+TGG - chr4_2:21337584-21337603 Msa0594180:CDS 20.0%
!! TTATTCTTAATAGCGTTAAA+TGG + chr4_2:21337738-21337757 None:intergenic 20.0%
!!! TTACGAATCTACTTTTTTAT+TGG - chr4_2:21337584-21337603 Msa0594180:CDS 20.0%
!! TTATTCTTAATAGCGTTAAA+TGG + chr4_2:21337738-21337757 None:intergenic 20.0%
!!! TTTTATCCTCATTTTTCAAG+TGG - chr4_2:21337314-21337333 Msa0594180:intron 25.0%
!! TAGAAAATTAATCACTGACT+AGG - chr4_2:21337616-21337635 Msa0594180:CDS 25.0%
! ATTAAGAATAATGAGAGTGA+TGG - chr4_2:21337747-21337766 Msa0594180:CDS 25.0%
!!! TTTTATCCTCATTTTTCAAG+TGG - chr4_2:21337314-21337333 Msa0594180:intron 25.0%
!! TAGAAAATTAATCACTGACT+AGG - chr4_2:21337616-21337635 Msa0594180:CDS 25.0%
! ATTAAGAATAATGAGAGTGA+TGG - chr4_2:21337747-21337766 Msa0594180:CDS 25.0%
! TTTACCATTTGAGATTGTTG+AGG - chr4_2:21337387-21337406 Msa0594180:intron 30.0%
! TTACCATTTGAGATTGTTGA+GGG - chr4_2:21337388-21337407 Msa0594180:intron 30.0%
! TTTACCATTTGAGATTGTTG+AGG - chr4_2:21337387-21337406 Msa0594180:intron 30.0%
! TTACCATTTGAGATTGTTGA+GGG - chr4_2:21337388-21337407 Msa0594180:intron 30.0%
ATAAACATACGTAGCACAGT+TGG + chr4_2:21337274-21337293 None:intergenic 35.0%
ACTAGACCACTTGAAAAATG+AGG + chr4_2:21337323-21337342 None:intergenic 35.0%
TTACCCTCAACAATCTCAAA+TGG + chr4_2:21337394-21337413 None:intergenic 35.0%
TTGAGCAGTTACCATAATCT+TGG + chr4_2:21337700-21337719 None:intergenic 35.0%
! AAGTCTTGTACAAGAGGATA+GGG + chr4_2:21337792-21337811 None:intergenic 35.0%
! TGATACAAGTCTTGTACAAG+AGG + chr4_2:21337798-21337817 None:intergenic 35.0%
ATAAACATACGTAGCACAGT+TGG + chr4_2:21337274-21337293 None:intergenic 35.0%
ACTAGACCACTTGAAAAATG+AGG + chr4_2:21337323-21337342 None:intergenic 35.0%
TTACCCTCAACAATCTCAAA+TGG + chr4_2:21337394-21337413 None:intergenic 35.0%
TTGAGCAGTTACCATAATCT+TGG + chr4_2:21337700-21337719 None:intergenic 35.0%
! AAGTCTTGTACAAGAGGATA+GGG + chr4_2:21337792-21337811 None:intergenic 35.0%
! TGATACAAGTCTTGTACAAG+AGG + chr4_2:21337798-21337817 None:intergenic 35.0%
ATCTCATGTGGAACAGTAAC+TGG - chr4_2:21337018-21337037 Msa0594180:three_prime_UTR 40.0%
!! CCTCTAAGATATCCAATGCA+TGG + chr4_2:21337054-21337073 None:intergenic 40.0%
CCATGCATTGGATATCTTAG+AGG - chr4_2:21337051-21337070 Msa0594180:three_prime_UTR 40.0%
TGCATTGGATATCTTAGAGG+TGG - chr4_2:21337054-21337073 Msa0594180:three_prime_UTR 40.0%
!! GTAGAGGTACTGATCTTGTA+AGG + chr4_2:21337252-21337271 None:intergenic 40.0%
TTTGTCATGCTTACAGCATC+AGG - chr4_2:21337652-21337671 Msa0594180:CDS 40.0%
TTGTCATGCTTACAGCATCA+GGG - chr4_2:21337653-21337672 Msa0594180:CDS 40.0%
AGGGCTTGAAGATAATGATG+TGG - chr4_2:21337672-21337691 Msa0594180:CDS 40.0%
ATGATGTGGCTCCAAGATTA+TGG - chr4_2:21337686-21337705 Msa0594180:CDS 40.0%
! CAAGTCTTGTACAAGAGGAT+AGG + chr4_2:21337793-21337812 None:intergenic 40.0%
ATCTCATGTGGAACAGTAAC+TGG - chr4_2:21337018-21337037 Msa0594180:three_prime_UTR 40.0%
!! CCTCTAAGATATCCAATGCA+TGG + chr4_2:21337054-21337073 None:intergenic 40.0%
CCATGCATTGGATATCTTAG+AGG - chr4_2:21337051-21337070 Msa0594180:three_prime_UTR 40.0%
TGCATTGGATATCTTAGAGG+TGG - chr4_2:21337054-21337073 Msa0594180:three_prime_UTR 40.0%
!! GTAGAGGTACTGATCTTGTA+AGG + chr4_2:21337252-21337271 None:intergenic 40.0%
TTTGTCATGCTTACAGCATC+AGG - chr4_2:21337652-21337671 Msa0594180:CDS 40.0%
TTGTCATGCTTACAGCATCA+GGG - chr4_2:21337653-21337672 Msa0594180:CDS 40.0%
AGGGCTTGAAGATAATGATG+TGG - chr4_2:21337672-21337691 Msa0594180:CDS 40.0%
ATGATGTGGCTCCAAGATTA+TGG - chr4_2:21337686-21337705 Msa0594180:CDS 40.0%
! CAAGTCTTGTACAAGAGGAT+AGG + chr4_2:21337793-21337812 None:intergenic 40.0%
GTGCATGATTGTTGCACCTA+TGG - chr4_2:21336984-21337003 Msa0594180:three_prime_UTR 45.0%
TTGAATGCTAACACAGCTGC+TGG - chr4_2:21337198-21337217 Msa0594180:intron 45.0%
TGTTAACACCGCATTTGCCA+GGG + chr4_2:21337227-21337246 None:intergenic 45.0%
ATGTTAACACCGCATTTGCC+AGG + chr4_2:21337228-21337247 None:intergenic 45.0%
!! ATACGTAGCACAGTTGGTAG+AGG + chr4_2:21337268-21337287 None:intergenic 45.0%
GTGCATGATTGTTGCACCTA+TGG - chr4_2:21336984-21337003 Msa0594180:three_prime_UTR 45.0%
TTGAATGCTAACACAGCTGC+TGG - chr4_2:21337198-21337217 Msa0594180:intron 45.0%
TGTTAACACCGCATTTGCCA+GGG + chr4_2:21337227-21337246 None:intergenic 45.0%
ATGTTAACACCGCATTTGCC+AGG + chr4_2:21337228-21337247 None:intergenic 45.0%
!! ATACGTAGCACAGTTGGTAG+AGG + chr4_2:21337268-21337287 None:intergenic 45.0%
GAGATTGCAGCATCTGCCAT+AGG + chr4_2:21337003-21337022 None:intergenic 50.0%
GCAGATGCTGCAATCTCATG+TGG - chr4_2:21337006-21337025 Msa0594180:three_prime_UTR 50.0%
GGTGCTCTTTCTCCATGCAT+TGG - chr4_2:21337039-21337058 Msa0594180:three_prime_UTR 50.0%
GGATATCTTAGAGGTGGTGC+TGG - chr4_2:21337060-21337079 Msa0594180:three_prime_UTR 50.0%
!! AGTGCTGCTCGTGCTATTTC+TGG - chr4_2:21337174-21337193 Msa0594180:intron 50.0%
GAGATTGCAGCATCTGCCAT+AGG + chr4_2:21337003-21337022 None:intergenic 50.0%
GCAGATGCTGCAATCTCATG+TGG - chr4_2:21337006-21337025 Msa0594180:three_prime_UTR 50.0%
GGTGCTCTTTCTCCATGCAT+TGG - chr4_2:21337039-21337058 Msa0594180:three_prime_UTR 50.0%
GGATATCTTAGAGGTGGTGC+TGG - chr4_2:21337060-21337079 Msa0594180:three_prime_UTR 50.0%
!! AGTGCTGCTCGTGCTATTTC+TGG - chr4_2:21337174-21337193 Msa0594180:intron 50.0%
TTCACTCCAGCACAGCATGC+TGG + chr4_2:21337093-21337112 None:intergenic 55.0%
AGCAGTTGCAAGCAGCCTGA+CGG + chr4_2:21337149-21337168 None:intergenic 55.0%
TTCACTCCAGCACAGCATGC+TGG + chr4_2:21337093-21337112 None:intergenic 55.0%
AGCAGTTGCAAGCAGCCTGA+CGG + chr4_2:21337149-21337168 None:intergenic 55.0%
CCAGCACAGCATGCTGGAGA+TGG + chr4_2:21337087-21337106 None:intergenic 60.0%
CCATCTCCAGCATGCTGTGC+TGG - chr4_2:21337084-21337103 Msa0594180:exon 60.0%
TTGCAAGCAGCCTGACGGTC+AGG + chr4_2:21337144-21337163 None:intergenic 60.0%
! AACACAGCTGCTGGTCTCCC+TGG - chr4_2:21337207-21337226 Msa0594180:intron 60.0%
! GCTGGTCTCCCTGGCAAATG+CGG - chr4_2:21337216-21337235 Msa0594180:intron 60.0%
CCAGCACAGCATGCTGGAGA+TGG + chr4_2:21337087-21337106 None:intergenic 60.0%
CCATCTCCAGCATGCTGTGC+TGG - chr4_2:21337084-21337103 Msa0594180:exon 60.0%
TTGCAAGCAGCCTGACGGTC+AGG + chr4_2:21337144-21337163 None:intergenic 60.0%
! AACACAGCTGCTGGTCTCCC+TGG - chr4_2:21337207-21337226 Msa0594180:intron 60.0%
! GCTGGTCTCCCTGGCAAATG+CGG - chr4_2:21337216-21337235 Msa0594180:intron 60.0%
!! ACGGTCAGGCGTGGTGGTGG+CGG + chr4_2:21337130-21337149 None:intergenic 70.0%
CTGACGGTCAGGCGTGGTGG+TGG + chr4_2:21337133-21337152 None:intergenic 70.0%
CACCACCACGCCTGACCGTC+AGG - chr4_2:21337131-21337150 Msa0594180:intron 70.0%
AGCCTGACGGTCAGGCGTGG+TGG + chr4_2:21337136-21337155 None:intergenic 70.0%
AGCAGCCTGACGGTCAGGCG+TGG + chr4_2:21337139-21337158 None:intergenic 70.0%
!! ACGGTCAGGCGTGGTGGTGG+CGG + chr4_2:21337130-21337149 None:intergenic 70.0%
CTGACGGTCAGGCGTGGTGG+TGG + chr4_2:21337133-21337152 None:intergenic 70.0%
CACCACCACGCCTGACCGTC+AGG - chr4_2:21337131-21337150 Msa0594180:intron 70.0%
AGCCTGACGGTCAGGCGTGG+TGG + chr4_2:21337136-21337155 None:intergenic 70.0%
AGCAGCCTGACGGTCAGGCG+TGG + chr4_2:21337139-21337158 None:intergenic 70.0%
!! GTCAGGCGTGGTGGTGGCGG+CGG + chr4_2:21337127-21337146 None:intergenic 75.0%
!! GTCAGGCGTGGTGGTGGCGG+CGG + chr4_2:21337127-21337146 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 21336946 21337859 21336946 ID=Msa0594180;Name=Msa0594180
chr4_2 mRNA 21336946 21337859 21336946 ID=Msa0594180-mRNA-1;Parent=Msa0594180;Name=Msa0594180-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0.5|1|1|1|2|148|119
chr4_2 exon 21336946 21337137 21336946 ID=Msa0594180-mRNA-1:exon:5957;Parent=Msa0594180-mRNA-1
chr4_2 exon 21337544 21337859 21337544 ID=Msa0594180-mRNA-1:exon:5956;Parent=Msa0594180-mRNA-1
chr4_2 CDS 21337544 21337859 21337544 ID=Msa0594180-mRNA-1:cds;Parent=Msa0594180-mRNA-1
chr4_2 CDS 21337094 21337137 21337094 ID=Msa0594180-mRNA-1:cds;Parent=Msa0594180-mRNA-1
chr4_2 three_prime_UTR 21336946 21337093 21336946 ID=Msa0594180-mRNA-1:three_prime_utr;Parent=Msa0594180-mRNA-1
Gene Sequence

>Msa0594180

ATGGCAAACATGAAGGTAGCATGTGTTGTTTTGATGATGTGCATGATTGTTGCACCTATGGCAGATGCTGCAATCTCATGTGGAACAGTAACTGGTGCTCTTTCTCCATGCATTGGATATCTTAGAGGTGGTGCTGGTCCATCTCCAGCATGCTGTGCTGGAGTGAAGAGACTTAACGCCGCCGCCACCACCACGCCTGACCGTCAGGCTGCTTGCAACTGCTTGAAAAGTGCTGCTCGTGCTATTTCTGGTTTGAATGCTAACACAGCTGCTGGTCTCCCTGGCAAATGCGGTGTTAACATTCCTTACAAGATCACATCAGGGCTTGAAGATAATGATGTGGCTCCAAGATTATGGTAA

Protein sequence

>Msa0594180

MANMKVACVVLMMCMIVAPMADAAISCGTVTGALSPCIGYLRGGAGPSPACCAGVKRLNAAATTTPDRQAACNCLKSAARAISGLNANTAAGLPGKCGVNIPYKITSGLEDNDVAPRLW*