Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369450 | XP_003626652.1 | 92.042 | 289 | 18 | 2 | 2 | 287 | 1 | 287 | 3.20e-171 | 485 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369450 | sp|P27061|PPA1_SOLLC | 43.636 | 220 | 120 | 3 | 67 | 286 | 39 | 254 | 1.25e-60 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369450 | I3T0R9 | 91.696 | 289 | 19 | 2 | 2 | 287 | 1 | 287 | 1.53e-171 | 485 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030800 | Msa1369450 | 0.814712 | 1.339854e-51 | -8.615850e-47 |
| Msa0071470 | Msa1369450 | 0.845828 | 3.182725e-59 | -8.615850e-47 |
| Msa0078210 | Msa1369450 | 0.811059 | 8.458187e-51 | -8.615850e-47 |
| Msa0086360 | Msa1369450 | 0.842932 | 1.911803e-58 | -8.615850e-47 |
| Msa0092970 | Msa1369450 | 0.830969 | 2.176772e-55 | -8.615850e-47 |
| Msa1369450 | Msa1399930 | 0.807083 | 6.010264e-50 | -8.615850e-47 |
| Msa1369450 | Msa1435320 | 0.822181 | 2.717988e-53 | -8.615850e-47 |
| Msa1369450 | Msa1438160 | 0.812471 | 4.170295e-51 | -8.615850e-47 |
| Msa1369450 | Msa1443400 | 0.822020 | 2.961073e-53 | -8.615850e-47 |
| Msa1369450 | Msa1448040 | 0.821922 | 3.120946e-53 | -8.615850e-47 |
| Msa1369450 | Msa1453600 | 0.809916 | 1.493215e-50 | -8.615850e-47 |
| Msa0740630 | Msa1369450 | 0.800489 | 1.407010e-48 | -8.615850e-47 |
| Msa0746340 | Msa1369450 | 0.866744 | 2.279003e-65 | -8.615850e-47 |
| Msa0820880 | Msa1369450 | 0.802812 | 4.696882e-49 | -8.615850e-47 |
| Msa0826380 | Msa1369450 | 0.800644 | 1.308619e-48 | -8.615850e-47 |
| Msa0826450 | Msa1369450 | 0.800632 | 1.316012e-48 | -8.615850e-47 |
| Msa0829050 | Msa1369450 | 0.830560 | 2.741676e-55 | -8.615850e-47 |
| Msa0202380 | Msa1369450 | 0.804021 | 2.638586e-49 | -8.615850e-47 |
| Msa1227710 | Msa1369450 | 0.843893 | 1.058587e-58 | -8.615850e-47 |
| Msa1256600 | Msa1369450 | 0.820853 | 5.506403e-53 | -8.615850e-47 |
| Msa1307930 | Msa1369450 | 0.911389 | 6.425672e-83 | -8.615850e-47 |
| Msa1333700 | Msa1369450 | 0.852087 | 5.810987e-61 | -8.615850e-47 |
| Msa0393100 | Msa1369450 | 0.802199 | 6.281787e-49 | -8.615850e-47 |
| Msa0476770 | Msa1369450 | 0.838288 | 3.144115e-57 | -8.615850e-47 |
| Msa0480550 | Msa1369450 | 0.802430 | 5.630475e-49 | -8.615850e-47 |
| Msa0481770 | Msa1369450 | 0.802376 | 5.777805e-49 | -8.615850e-47 |
| Msa1027910 | Msa1369450 | 0.846978 | 1.546426e-59 | -8.615850e-47 |
| Msa1084890 | Msa1369450 | 0.804310 | 2.297438e-49 | -8.615850e-47 |
| Msa0267900 | Msa1369450 | 0.823894 | 1.083060e-53 | -8.615850e-47 |
| Msa0306310 | Msa1369450 | 0.834621 | 2.695995e-56 | -8.615850e-47 |
| Msa1157110 | Msa1369450 | 0.801741 | 7.801889e-49 | -8.615850e-47 |
| Msa1184400 | Msa1369450 | 0.978353 | 1.200172e-145 | -8.615850e-47 |
| Msa1224510 | Msa1369450 | 0.863202 | 2.945583e-64 | -8.615850e-47 |
| Msa0482820 | Msa1369450 | 0.818953 | 1.497355e-52 | -8.615850e-47 |
| Msa0500770 | Msa1369450 | 0.826047 | 3.361616e-54 | -8.615850e-47 |
| Msa0550550 | Msa1369450 | 0.802023 | 6.828418e-49 | -8.615850e-47 |
| Msa0570460 | Msa1369450 | 0.800558 | 1.362395e-48 | -8.615850e-47 |
| Msa0576560 | Msa1369450 | 0.807691 | 4.466764e-50 | -8.615850e-47 |
| Msa0848020 | Msa1369450 | 0.847059 | 1.469460e-59 | -8.615850e-47 |
| Msa0865810 | Msa1369450 | 0.801358 | 9.350503e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369450 | MtrunA17_Chr8g0334461 | 92.042 | 289 | 18 | 2 | 2 | 287 | 1 | 287 | 2.94e-175 | 485 |
| Msa1369450 | MtrunA17_Chr8g0340031 | 60.455 | 220 | 84 | 2 | 67 | 286 | 33 | 249 | 7.24e-98 | 288 |
| Msa1369450 | MtrunA17_Chr8g0356021 | 46.512 | 215 | 111 | 3 | 73 | 287 | 49 | 259 | 2.12e-64 | 202 |
| Msa1369450 | MtrunA17_Chr8g0340821 | 43.519 | 216 | 116 | 4 | 73 | 287 | 51 | 261 | 1.12e-61 | 196 |
| Msa1369450 | MtrunA17_Chr8g0340811 | 43.519 | 216 | 116 | 4 | 73 | 287 | 54 | 264 | 2.35e-61 | 195 |
| Msa1369450 | MtrunA17_Chr8g0340021 | 63.077 | 130 | 48 | 0 | 157 | 286 | 23 | 152 | 5.89e-60 | 187 |
| Msa1369450 | MtrunA17_Chr6g0487381 | 43.578 | 218 | 117 | 4 | 70 | 286 | 39 | 251 | 8.33e-58 | 186 |
| Msa1369450 | MtrunA17_Chr8g0334471 | 98.592 | 71 | 1 | 0 | 159 | 229 | 7 | 77 | 2.88e-49 | 157 |
| Msa1369450 | MtrunA17_Chr1g0168451 | 37.615 | 218 | 133 | 3 | 70 | 287 | 52 | 266 | 4.33e-48 | 161 |
| Msa1369450 | MtrunA17_Chr1g0186301 | 36.364 | 220 | 135 | 5 | 68 | 287 | 48 | 262 | 1.10e-42 | 147 |
| Msa1369450 | MtrunA17_Chr7g0265641 | 38.739 | 111 | 66 | 2 | 160 | 269 | 6 | 115 | 6.54e-20 | 83.6 |
| Msa1369450 | MtrunA17_Chr8g0356651 | 43.182 | 88 | 46 | 2 | 73 | 160 | 52 | 135 | 1.67e-18 | 80.9 |
| Msa1369450 | MtrunA17_Chr8g0356661 | 57.407 | 54 | 23 | 0 | 231 | 284 | 1 | 54 | 3.63e-16 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369450 | AT2G38600.2 | 57.983 | 238 | 95 | 3 | 51 | 286 | 16 | 250 | 1.33e-94 | 280 |
| Msa1369450 | AT2G38600.1 | 57.983 | 238 | 95 | 3 | 51 | 286 | 16 | 250 | 1.33e-94 | 280 |
| Msa1369450 | AT4G29270.1 | 42.202 | 218 | 122 | 3 | 70 | 287 | 43 | 256 | 2.12e-62 | 197 |
| Msa1369450 | AT4G29260.1 | 43.891 | 221 | 120 | 3 | 66 | 286 | 38 | 254 | 2.56e-61 | 195 |
| Msa1369450 | AT4G25150.1 | 43.925 | 214 | 116 | 3 | 73 | 286 | 50 | 259 | 1.44e-60 | 193 |
| Msa1369450 | AT5G51260.1 | 39.506 | 243 | 139 | 4 | 44 | 286 | 22 | 256 | 2.08e-59 | 190 |
| Msa1369450 | AT1G04040.1 | 36.948 | 249 | 148 | 5 | 46 | 287 | 25 | 271 | 2.27e-50 | 167 |
| Msa1369450 | AT5G44020.1 | 37.273 | 220 | 134 | 4 | 70 | 287 | 55 | 272 | 4.80e-47 | 159 |
| Msa1369450 | AT5G24780.1 | 35.648 | 216 | 131 | 7 | 73 | 286 | 59 | 268 | 1.49e-39 | 139 |
| Msa1369450 | AT5G24770.1 | 36.111 | 216 | 130 | 7 | 73 | 286 | 54 | 263 | 2.08e-39 | 139 |
| Msa1369450 | AT5G51260.2 | 36.022 | 186 | 111 | 4 | 44 | 229 | 22 | 199 | 1.22e-37 | 132 |
| Msa1369450 | AT5G24780.2 | 32.298 | 161 | 103 | 5 | 73 | 231 | 59 | 215 | 3.28e-24 | 98.2 |
| Msa1369450 | AT5G24770.2 | 33.333 | 159 | 100 | 5 | 73 | 229 | 54 | 208 | 1.35e-23 | 95.9 |
Find 86 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTGTCCGTAGTGATTT+TGG | 0.138152 | tig0018782:-155255 | None:intergenic |
| TCATCAAGATGCTTGGATTT+TGG | 0.148705 | tig0018782:+154936 | Msa1369450:CDS |
| AAGAGGAAGGGTATAGAATA+TGG | 0.225208 | tig0018782:+158198 | Msa1369450:CDS |
| AAAGCAGAATATATATAATA+AGG | 0.234689 | tig0018782:-154471 | None:intergenic |
| TTGTTAATTACCTTAAAATA+AGG | 0.238981 | tig0018782:-155307 | None:intergenic |
| AATCTCTTAGCTTTATAATA+AGG | 0.250871 | tig0018782:-154988 | None:intergenic |
| TATTATAAAGCTAAGAGATT+TGG | 0.260805 | tig0018782:+154991 | Msa1369450:CDS |
| TGCCATTGCCAACAAATTCT+TGG | 0.268839 | tig0018782:+154432 | Msa1369450:five_prime_UTR |
| GAAGAAGAAGAATCTAATTC+AGG | 0.315145 | tig0018782:-154685 | None:intergenic |
| ATTATAAAGCTAAGAGATTT+GGG | 0.319914 | tig0018782:+154992 | Msa1369450:CDS |
| TGATCTCCAAGGGGAGTGTT+TGG | 0.332481 | tig0018782:+158244 | Msa1369450:CDS |
| TTCTTCGTCGTCGGAGATGA+TGG | 0.343997 | tig0018782:+154705 | Msa1369450:CDS |
| CTTAGTACCACAGGGTTTGC+AGG | 0.358088 | tig0018782:-155161 | None:intergenic |
| AATTTGTTGGCAATGGCATT+AGG | 0.360678 | tig0018782:-154427 | None:intergenic |
| TTCAAAGTCTTCTTAGTAAC+GGG | 0.402138 | tig0018782:+155212 | Msa1369450:CDS |
| TTGAACATCGCCGAATCAAA+TGG | 0.405341 | tig0018782:-155113 | None:intergenic |
| GAAATGCAGTACATAGGATT+GGG | 0.410928 | tig0018782:-158287 | None:intergenic |
| AATATATGAACAAATTGAAT+AGG | 0.414480 | tig0018782:-154504 | None:intergenic |
| AAGCAGAATATATATAATAA+GGG | 0.423271 | tig0018782:-154470 | None:intergenic |
| GATCTCCAAGGGGAGTGTTT+GGG | 0.434280 | tig0018782:+158245 | Msa1369450:CDS |
| AAAGATATTGCAAGCAGTAT+TGG | 0.455653 | tig0018782:+154555 | Msa1369450:CDS |
| CAAACAATAATGTGCGTCCT+TGG | 0.456134 | tig0018782:+154779 | Msa1369450:CDS |
| CGGAAGGAGATTGAAGAGGA+AGG | 0.460525 | tig0018782:+158185 | Msa1369450:CDS |
| CTAGAAGAAGATTATAAGAA+AGG | 0.463752 | tig0018782:-154364 | None:intergenic |
| TATAGAATATGGGGAAATGT+AGG | 0.464952 | tig0018782:+158209 | Msa1369450:CDS |
| AGAGGAAGGGTATAGAATAT+GGG | 0.466203 | tig0018782:+158199 | Msa1369450:CDS |
| TTTCTTACATGGATTGATGA+TGG | 0.469031 | tig0018782:-154328 | None:intergenic |
| ATTTGATTCGGCGATGTTCA+AGG | 0.469405 | tig0018782:+155115 | Msa1369450:CDS |
| AGAAATGCAGTACATAGGAT+TGG | 0.475430 | tig0018782:-158288 | None:intergenic |
| AAATGTGTCCAAGAATTTGT+TGG | 0.483989 | tig0018782:-154440 | None:intergenic |
| TGAACATCGCCGAATCAAAT+GGG | 0.497521 | tig0018782:-155112 | None:intergenic |
| CTACTACTCATCAAGATGCT+TGG | 0.498659 | tig0018782:+154929 | Msa1369450:CDS |
| CAGATGCGACCCATTTGATT+CGG | 0.501157 | tig0018782:+155103 | Msa1369450:intron |
| TTAAACAATCTTAGTACCAC+AGG | 0.502868 | tig0018782:-155170 | None:intergenic |
| ATGAGAGGTATGGGCTGAGC+TGG | 0.503269 | tig0018782:+154740 | Msa1369450:CDS |
| CATGTTGAGAATTACATGAT+TGG | 0.504365 | tig0018782:+154829 | Msa1369450:CDS |
| ATTCAAAGTCTTCTTAGTAA+CGG | 0.509040 | tig0018782:+155211 | Msa1369450:CDS |
| GAATATATATAATAAGGGAT+TGG | 0.510983 | tig0018782:-154465 | None:intergenic |
| GTTGGTAGCCGATGAATCCT+TGG | 0.512582 | tig0018782:-155283 | None:intergenic |
| ATTCGGCGATGTTCAAGGCA+TGG | 0.525698 | tig0018782:+155120 | Msa1369450:CDS |
| GTTGATGATGATGAGAGGTA+TGG | 0.526024 | tig0018782:+154730 | Msa1369450:CDS |
| CCCCTTGGAGATCAGTCCAC+TGG | 0.527498 | tig0018782:-158235 | None:intergenic |
| TTCAAGGCATGGATTAATCA+AGG | 0.531044 | tig0018782:+155131 | Msa1369450:CDS |
| GTTGAGAATTACATGATTGG+TGG | 0.532110 | tig0018782:+154832 | Msa1369450:CDS |
| TGAGTAGTAGAAGTAGAAAG+AGG | 0.532684 | tig0018782:-154916 | None:intergenic |
| TTGCATAACCAAGGATTCAT+CGG | 0.534552 | tig0018782:+155275 | Msa1369450:CDS |
| TTTAAAACGTTGATAGACAA+AGG | 0.537850 | tig0018782:+155188 | Msa1369450:CDS |
| GGAAGGAGATTGAAGAGGAA+GGG | 0.539212 | tig0018782:+158186 | Msa1369450:CDS |
| ATATTGCAAGCAGTATTGGC+GGG | 0.541832 | tig0018782:+154559 | Msa1369450:CDS |
| TGAAATACAAGTCATCGATT+CGG | 0.550970 | tig0018782:+158165 | Msa1369450:CDS |
| AATCAAGAAATGCAGTACAT+AGG | 0.552007 | tig0018782:-158293 | None:intergenic |
| GATTGCCCAAACACTCCCCT+TGG | 0.552792 | tig0018782:-158250 | None:intergenic |
| GTATGGGCTGAGCTGGAGGT+TGG | 0.553413 | tig0018782:+154747 | Msa1369450:CDS |
| TTTGTTGAGTACTACACAAG+TGG | 0.559383 | tig0018782:-158333 | None:intergenic |
| GTCCAAGAATTTGTTGGCAA+TGG | 0.560861 | tig0018782:-154434 | None:intergenic |
| GATATTGCAAGCAGTATTGG+CGG | 0.561358 | tig0018782:+154558 | Msa1369450:CDS |
| GCTGAGCTGGAGGTTGGCAA+TGG | 0.567591 | tig0018782:+154753 | Msa1369450:CDS |
| TTAGTACCACAGGGTTTGCA+GGG | 0.578209 | tig0018782:-155160 | None:intergenic |
| ACCAGTGGACTGATCTCCAA+GGG | 0.586615 | tig0018782:+158234 | Msa1369450:CDS |
| CGAAGTGGGACTGTCTTCCA+AGG | 0.589549 | tig0018782:-154796 | None:intergenic |
| TTCGTCGTCGGAGATGATGG+TGG | 0.596102 | tig0018782:+154708 | Msa1369450:CDS |
| GGCAGGAGTGTGAAATACAA+AGG | 0.596346 | tig0018782:+158131 | Msa1369450:intron |
| ATTACCTTAAAATAAGGCGT+TGG | 0.596763 | tig0018782:-155301 | None:intergenic |
| GAGGAAGGGTATAGAATATG+GGG | 0.605333 | tig0018782:+158200 | Msa1369450:CDS |
| TTGATGATGATGAGAGGTAT+GGG | 0.609061 | tig0018782:+154731 | Msa1369450:CDS |
| TATTAAGCAATCTAGTGTTG+AGG | 0.609828 | tig0018782:+154602 | Msa1369450:CDS |
| ACATGCTTGTAGCAACGAAG+TGG | 0.613933 | tig0018782:-154811 | None:intergenic |
| TATTGCAAGCAGTATTGGCG+GGG | 0.620877 | tig0018782:+154560 | Msa1369450:CDS |
| AACACTTGCCAAAATCACTA+CGG | 0.621427 | tig0018782:+155247 | Msa1369450:CDS |
| AGATTATAAGAAAGGTACTA+CGG | 0.623028 | tig0018782:-154356 | None:intergenic |
| ACGGACAATTTGCATAACCA+AGG | 0.630462 | tig0018782:+155266 | Msa1369450:CDS |
| ATACAAGTCATCGATTCGGA+AGG | 0.633877 | tig0018782:+158169 | Msa1369450:CDS |
| AGAGGTATGGGCTGAGCTGG+AGG | 0.636934 | tig0018782:+154743 | Msa1369450:CDS |
| GACCAGTGGACTGATCTCCA+AGG | 0.637891 | tig0018782:+158233 | Msa1369450:CDS |
| CATGCTTGTAGCAACGAAGT+GGG | 0.638112 | tig0018782:-154810 | None:intergenic |
| AAATGCAGTACATAGGATTG+GGG | 0.643105 | tig0018782:-158286 | None:intergenic |
| GATTCGGAAGGAGATTGAAG+AGG | 0.657286 | tig0018782:+158181 | Msa1369450:CDS |
| ACACAATTTCATCCACGATG+AGG | 0.660835 | tig0018782:-154876 | None:intergenic |
| TAAACAATCTTAGTACCACA+GGG | 0.665394 | tig0018782:-155169 | None:intergenic |
| TTAGTAACGGGTAGATACGA+AGG | 0.667985 | tig0018782:+155224 | Msa1369450:CDS |
| GGGGAAATGTAGGAGACCAG+TGG | 0.670649 | tig0018782:+158219 | Msa1369450:CDS |
| TGGTGGTTGATGATGATGAG+AGG | 0.675061 | tig0018782:+154725 | Msa1369450:CDS |
| GAAATACAAAGGACAAAGTG+CGG | 0.704065 | tig0018782:+158142 | Msa1369450:CDS |
| CCAGTGGACTGATCTCCAAG+GGG | 0.746364 | tig0018782:+158235 | Msa1369450:CDS |
| GCATGACATGAACCTCATCG+TGG | 0.754708 | tig0018782:+154864 | Msa1369450:CDS |
| AATGTGCCCTGCAAACCCTG+TGG | 0.782788 | tig0018782:+155154 | Msa1369450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTATGATATGATAT+TGG | + | tig0018782:155076-155095 | Msa1369450:intron | 10.0% |
| !!! | TTTTTTTATGATATGATATT+GGG | + | tig0018782:155077-155096 | Msa1369450:intron | 10.0% |
| !! | ATATATATAATTGGAAATTA+AGG | - | tig0018782:155896-155915 | None:intergenic | 10.0% |
| !!! | TAATTGTTAAAATTGTTTTA+TGG | - | tig0018782:156680-156699 | None:intergenic | 10.0% |
| !!! | TTAACAATTAATTTTCTTTT+TGG | + | tig0018782:156690-156709 | Msa1369450:intron | 10.0% |
| !! | TGTATTCAATTAATAAAAAT+TGG | + | tig0018782:157086-157105 | Msa1369450:intron | 10.0% |
| !! | GTATTCAATTAATAAAAATT+GGG | + | tig0018782:157087-157106 | Msa1369450:intron | 10.0% |
| !! | AAGCAGAATATATATAATAA+GGG | - | tig0018782:154473-154492 | None:intergenic | 15.0% |
| !! | AAAGCAGAATATATATAATA+AGG | - | tig0018782:154474-154493 | None:intergenic | 15.0% |
| !! | AATATATGAACAAATTGAAT+AGG | - | tig0018782:154507-154526 | None:intergenic | 15.0% |
| !!! | TTTTTATTATATGTTAGACT+TGG | + | tig0018782:155039-155058 | Msa1369450:intron | 15.0% |
| !!! | TTTTATTATATGTTAGACTT+GGG | + | tig0018782:155040-155059 | Msa1369450:intron | 15.0% |
| !! | TTGTTAATTACCTTAAAATA+AGG | - | tig0018782:155310-155329 | None:intergenic | 15.0% |
| !!! | TTATTTTTTTTTGTGATGTT+CGG | + | tig0018782:155518-155537 | Msa1369450:intron | 15.0% |
| !! | TTTATAACAATGATATTTGT+GGG | + | tig0018782:155619-155638 | Msa1369450:intron | 15.0% |
| !!! | TGTTAACTCTAAAATAAAAT+AGG | - | tig0018782:155948-155967 | None:intergenic | 15.0% |
| !!! | ATATACTCTTTTTGTTTTAT+AGG | - | tig0018782:156096-156115 | None:intergenic | 15.0% |
| !!! | TGCATTTTCTAATTTTATTA+CGG | + | tig0018782:156213-156232 | Msa1369450:intron | 15.0% |
| !! | AACAATTTCATAATATCAAA+AGG | - | tig0018782:156716-156735 | None:intergenic | 15.0% |
| !!! | TAAGCAAAAATTAACTTTTT+AGG | + | tig0018782:156841-156860 | Msa1369450:intron | 15.0% |
| !!! | TAAGCAAAAATCAATTTTTT+AGG | - | tig0018782:156930-156949 | None:intergenic | 15.0% |
| !!! | AATTTATTGAAAGTATAAAC+AGG | - | tig0018782:157026-157045 | None:intergenic | 15.0% |
| !!! | TGTATTCAATTAATTTTTTG+AGG | + | tig0018782:157060-157079 | Msa1369450:intron | 15.0% |
| !!! | GTATTCAATTAATTTTTTGA+GGG | + | tig0018782:157061-157080 | Msa1369450:intron | 15.0% |
| !!! | TTTGTTAACCTAATTTTTAT+GGG | - | tig0018782:157289-157308 | None:intergenic | 15.0% |
| !! | AAATTCGTAATTAACAATAA+AGG | + | tig0018782:157381-157400 | Msa1369450:intron | 15.0% |
| !! | AATTCGTAATTAACAATAAA+GGG | + | tig0018782:157382-157401 | Msa1369450:intron | 15.0% |
| !!! | AACTTTTTTTTTCTAACTTA+CGG | + | tig0018782:157435-157454 | Msa1369450:intron | 15.0% |
| !! | AGATAAGAAAATATTAGTAT+CGG | - | tig0018782:157664-157683 | None:intergenic | 15.0% |
| !!! | CTTTTAACCTTAATATTTAT+TGG | + | tig0018782:158104-158123 | Msa1369450:intron | 15.0% |
| !! | GAATATATATAATAAGGGAT+TGG | - | tig0018782:154468-154487 | None:intergenic | 20.0% |
| !!! | AATCTCTTAGCTTTATAATA+AGG | - | tig0018782:154991-155010 | None:intergenic | 20.0% |
| !! | TATTATAAAGCTAAGAGATT+TGG | + | tig0018782:154991-155010 | Msa1369450:CDS | 20.0% |
| !! | ATTATAAAGCTAAGAGATTT+GGG | + | tig0018782:154992-155011 | Msa1369450:CDS | 20.0% |
| !! | TTTATTATATGTTAGACTTG+GGG | + | tig0018782:155041-155060 | Msa1369450:intron | 20.0% |
| !! | ACAGAAAATTATTAATGACT+AGG | + | tig0018782:155489-155508 | Msa1369450:intron | 20.0% |
| !!! | TATTTTTTTTTGTGATGTTC+GGG | + | tig0018782:155519-155538 | Msa1369450:intron | 20.0% |
| !! | GTTTATAACAATGATATTTG+TGG | + | tig0018782:155618-155637 | Msa1369450:intron | 20.0% |
| !! | TTATAACAATGATATTTGTG+GGG | + | tig0018782:155620-155639 | Msa1369450:intron | 20.0% |
| !! | ACAGATAACTATACTAAAAT+CGG | - | tig0018782:155747-155766 | None:intergenic | 20.0% |
| !! | CATAGCTTGATATATATAAT+TGG | - | tig0018782:155905-155924 | None:intergenic | 20.0% |
| !!! | GATTTGGTTAAAATAATACA+AGG | - | tig0018782:156053-156072 | None:intergenic | 20.0% |
| !!! | AAGAGTATATTTAATTGACT+TGG | + | tig0018782:156106-156125 | Msa1369450:intron | 20.0% |
| !!! | ATATATCCACATTTTCTATT+GGG | + | tig0018782:156298-156317 | Msa1369450:intron | 20.0% |
| !!! | TATTGGGATATTTTTTGTAT+TGG | + | tig0018782:156314-156333 | Msa1369450:intron | 20.0% |
| !!! | AGGTGTTTTATTTTATTTGA+GGG | - | tig0018782:156488-156507 | None:intergenic | 20.0% |
| !! | CAAAACTTACTCATTATATT+TGG | - | tig0018782:156789-156808 | None:intergenic | 20.0% |
| !! | CATTCATTAAATGATGTATT+TGG | + | tig0018782:156866-156885 | Msa1369450:intron | 20.0% |
| !! | AATTAATTATGAAGATTGCA+TGG | - | tig0018782:156984-157003 | None:intergenic | 20.0% |
| !!! | ACAGGTTTAATTTTTTTTGA+AGG | - | tig0018782:157008-157027 | None:intergenic | 20.0% |
| !!! | CTTTGTTAACCTAATTTTTA+TGG | - | tig0018782:157290-157309 | None:intergenic | 20.0% |
| !! | CATAAAAATTAGGTTAACAA+AGG | + | tig0018782:157288-157307 | Msa1369450:intron | 20.0% |
| !!! | AAAGGTTCAATTAATTTTGA+GGG | + | tig0018782:157306-157325 | Msa1369450:intron | 20.0% |
| !! | ATTCGTAATTAACAATAAAG+GGG | + | tig0018782:157383-157402 | Msa1369450:intron | 20.0% |
| !!! | CTCTAAAAGTGTTTTTATTA+TGG | - | tig0018782:157726-157745 | None:intergenic | 20.0% |
| !!! | CATAATAAAAACACTTTTAG+AGG | + | tig0018782:157724-157743 | Msa1369450:intron | 20.0% |
| !!! | GAAATTAAGTTGATTAATGA+TGG | + | tig0018782:158072-158091 | Msa1369450:intron | 20.0% |
| !!! | ACCTTAATATTTATTGGTTT+TGG | + | tig0018782:158110-158129 | Msa1369450:intron | 20.0% |
| !!! | AGATTATAAGAAAGGTACTA+CGG | - | tig0018782:154359-154378 | None:intergenic | 25.0% |
| ! | CTAGAAGAAGATTATAAGAA+AGG | - | tig0018782:154367-154386 | None:intergenic | 25.0% |
| !! | TTTTATGATATGATATTGGG+TGG | + | tig0018782:155080-155099 | Msa1369450:intron | 25.0% |
| !! | TTTAAAACGTTGATAGACAA+AGG | + | tig0018782:155188-155207 | Msa1369450:CDS | 25.0% |
| ! | ATTCAAAGTCTTCTTAGTAA+CGG | + | tig0018782:155211-155230 | Msa1369450:CDS | 25.0% |
| ! | GACAATGCATAATTTATACA+AGG | - | tig0018782:155559-155578 | None:intergenic | 25.0% |
| ! | TTATTGTTCTGATACTAATG+CGG | - | tig0018782:155677-155696 | None:intergenic | 25.0% |
| !! | CATATATCCACATTTTCTAT+TGG | + | tig0018782:156297-156316 | Msa1369450:intron | 25.0% |
| ! | AAATATCCCAATAGAAAATG+TGG | - | tig0018782:156307-156326 | None:intergenic | 25.0% |
| ! | AATTTCACTCGTTAGTTAAA+TGG | + | tig0018782:156374-156393 | Msa1369450:intron | 25.0% |
| !!! | TTTTATTTTATTTGAGGGGA+GGG | - | tig0018782:156483-156502 | None:intergenic | 25.0% |
| !!! | GGTGTTTTATTTTATTTGAG+GGG | - | tig0018782:156487-156506 | None:intergenic | 25.0% |
| !!! | GAGGTGTTTTATTTTATTTG+AGG | - | tig0018782:156489-156508 | None:intergenic | 25.0% |
| ! | ATAAAATAAAACACCTCATG+TGG | + | tig0018782:156492-156511 | Msa1369450:intron | 25.0% |
| ! | GAAACTAAAAAAATGCGTAA+TGG | + | tig0018782:156516-156535 | Msa1369450:intron | 25.0% |
| ! | CTTGTTTGTAAAAGAAAGTT+TGG | + | tig0018782:156642-156661 | Msa1369450:intron | 25.0% |
| ! | ATGAAATTGTTGCATATAAC+TGG | + | tig0018782:156725-156744 | Msa1369450:intron | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | - | tig0018782:156940-156959 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+TGG | + | tig0018782:156940-156959 | Msa1369450:intron | 25.0% |
| !! | TTTTGCTTATAATAGTGACT+GGG | + | tig0018782:156941-156960 | Msa1369450:intron | 25.0% |
| ! | CAATAAAAAGTTACTACTCT+TGG | + | tig0018782:157225-157244 | Msa1369450:intron | 25.0% |
| ! | TAGACAAACCCATAAAAATT+AGG | + | tig0018782:157278-157297 | Msa1369450:intron | 25.0% |
| !! | CAAAGGTTCAATTAATTTTG+AGG | + | tig0018782:157305-157324 | Msa1369450:intron | 25.0% |
| !!! | TCAATTAATTTTGAGGGAAA+AGG | + | tig0018782:157312-157331 | Msa1369450:intron | 25.0% |
| ! | TTCGTAATTAACAATAAAGG+GGG | + | tig0018782:157384-157403 | Msa1369450:intron | 25.0% |
| ! | ACATCTTACAATATTGGTAT+TGG | - | tig0018782:157623-157642 | None:intergenic | 25.0% |
| ! | TGATGAACATCTTACAATAT+TGG | - | tig0018782:157629-157648 | None:intergenic | 25.0% |
| ! | GATGAATGAATGATAGTTTA+TGG | + | tig0018782:157946-157965 | Msa1369450:intron | 25.0% |
| ! | TTGTTTATTGACCAAATTGT+TGG | + | tig0018782:157992-158011 | Msa1369450:intron | 25.0% |
| ! | TATCGAATAAACCAACAATT+TGG | - | tig0018782:158006-158025 | None:intergenic | 25.0% |
| ! | GCCAAAACCAATAAATATTA+AGG | - | tig0018782:158114-158133 | None:intergenic | 25.0% |
| !!! | TAATATTTATTGGTTTTGGC+AGG | + | tig0018782:158114-158133 | Msa1369450:intron | 25.0% |
| ! | TTTCTTACATGGATTGATGA+TGG | - | tig0018782:154331-154350 | None:intergenic | 30.0% |
| AAATGTGTCCAAGAATTTGT+TGG | - | tig0018782:154443-154462 | None:intergenic | 30.0% | |
| AAAGATATTGCAAGCAGTAT+TGG | + | tig0018782:154555-154574 | Msa1369450:CDS | 30.0% | |
| TATTAAGCAATCTAGTGTTG+AGG | + | tig0018782:154602-154621 | Msa1369450:CDS | 30.0% | |
| GAAGAAGAAGAATCTAATTC+AGG | - | tig0018782:154688-154707 | None:intergenic | 30.0% | |
| CATGTTGAGAATTACATGAT+TGG | + | tig0018782:154829-154848 | Msa1369450:CDS | 30.0% | |
| TAAACAATCTTAGTACCACA+GGG | - | tig0018782:155172-155191 | None:intergenic | 30.0% | |
| TTAAACAATCTTAGTACCAC+AGG | - | tig0018782:155173-155192 | None:intergenic | 30.0% | |
| TTCAAAGTCTTCTTAGTAAC+GGG | + | tig0018782:155212-155231 | Msa1369450:CDS | 30.0% | |
| ATTACCTTAAAATAAGGCGT+TGG | - | tig0018782:155304-155323 | None:intergenic | 30.0% | |
| ACAAAAACTGTTGTACCAAA+AGG | - | tig0018782:155375-155394 | None:intergenic | 30.0% | |
| ATATTAGACATTGGATTTGG+AGG | - | tig0018782:155813-155832 | None:intergenic | 30.0% | |
| GACATATTAGACATTGGATT+TGG | - | tig0018782:155816-155835 | None:intergenic | 30.0% | |
| !! | GTATATTTAATTGACTTGGC+CGG | + | tig0018782:156110-156129 | Msa1369450:intron | 30.0% |
| !! | TTTGTTGGAAGTTGATATGT+AGG | + | tig0018782:156133-156152 | Msa1369450:intron | 30.0% |
| !! | TTGTTGGAAGTTGATATGTA+GGG | + | tig0018782:156134-156153 | Msa1369450:intron | 30.0% |
| ! | AATGCTAATGCTTTTGACAA+TGG | - | tig0018782:156186-156205 | None:intergenic | 30.0% |
| ! | TCTAATTTTATTACGGCTAG+TGG | + | tig0018782:156220-156239 | Msa1369450:intron | 30.0% |
| ACTAACGAGTGAAATTAACA+AGG | - | tig0018782:156370-156389 | None:intergenic | 30.0% | |
| TTTCACTAAGTGAAGGAATT+TGG | - | tig0018782:156426-156445 | None:intergenic | 30.0% | |
| !!! | TTTATTTTATTTGAGGGGAG+GGG | - | tig0018782:156482-156501 | None:intergenic | 30.0% |
| !!! | GTTTTATTTTATTTGAGGGG+AGG | - | tig0018782:156484-156503 | None:intergenic | 30.0% |
| !!! | TTTTTTAGTTTCTCCACATG+AGG | - | tig0018782:156508-156527 | None:intergenic | 30.0% |
| ACTAAAAAAATGCGTAATGG+AGG | + | tig0018782:156519-156538 | Msa1369450:intron | 30.0% | |
| ! | TTTTCACGTCAAAAACAAGA+AGG | + | tig0018782:156564-156583 | Msa1369450:intron | 30.0% |
| TTTGCTTATAATAGTGACTG+GGG | + | tig0018782:156942-156961 | Msa1369450:intron | 30.0% | |
| GTGCAATATTGCATATGTTA+AGG | - | tig0018782:157254-157273 | None:intergenic | 30.0% | |
| ATTAATTGAGTACTCGTTCT+TGG | + | tig0018782:157339-157358 | Msa1369450:intron | 30.0% | |
| TTAATTGAGTACTCGTTCTT+GGG | + | tig0018782:157340-157359 | Msa1369450:intron | 30.0% | |
| AATTAACAATAAAGGGGGAA+AGG | + | tig0018782:157389-157408 | Msa1369450:intron | 30.0% | |
| AAGACGAAAAGTAAATGAAG+AGG | - | tig0018782:157582-157601 | None:intergenic | 30.0% | |
| !! | TCTTCATTTACTTTTCGTCT+TGG | + | tig0018782:157581-157600 | Msa1369450:intron | 30.0% |
| ! | AATGAAGTGTGCTGATAAAA+TGG | + | tig0018782:158029-158048 | Msa1369450:intron | 30.0% |
| TTGATTAATGATGGTTGTGA+AGG | + | tig0018782:158081-158100 | Msa1369450:intron | 30.0% | |
| ! | TGAAATACAAGTCATCGATT+CGG | + | tig0018782:158165-158184 | Msa1369450:CDS | 30.0% |
| TATAGAATATGGGGAAATGT+AGG | + | tig0018782:158209-158228 | Msa1369450:CDS | 30.0% | |
| AATCAAGAAATGCAGTACAT+AGG | - | tig0018782:158296-158315 | None:intergenic | 30.0% | |
| !! | AATTTGTTGGCAATGGCATT+AGG | - | tig0018782:154430-154449 | None:intergenic | 35.0% |
| !! | TTGATGATGATGAGAGGTAT+GGG | + | tig0018782:154731-154750 | Msa1369450:CDS | 35.0% |
| GTTGAGAATTACATGATTGG+TGG | + | tig0018782:154832-154851 | Msa1369450:CDS | 35.0% | |
| TGAGTAGTAGAAGTAGAAAG+AGG | - | tig0018782:154919-154938 | None:intergenic | 35.0% | |
| ! | TCATCAAGATGCTTGGATTT+TGG | + | tig0018782:154936-154955 | Msa1369450:CDS | 35.0% |
| ! | TTCAAGGCATGGATTAATCA+AGG | + | tig0018782:155131-155150 | Msa1369450:CDS | 35.0% |
| AACACTTGCCAAAATCACTA+CGG | + | tig0018782:155247-155266 | Msa1369450:CDS | 35.0% | |
| ! | CAAATTGTCCGTAGTGATTT+TGG | - | tig0018782:155258-155277 | None:intergenic | 35.0% |
| TTGCATAACCAAGGATTCAT+CGG | + | tig0018782:155275-155294 | Msa1369450:CDS | 35.0% | |
| ! | ATAATTAGCTAGCGACCTTT+TGG | + | tig0018782:155357-155376 | Msa1369450:intron | 35.0% |
| TTTGTGATATAAGCCTCCTT+AGG | + | tig0018782:155390-155409 | Msa1369450:intron | 35.0% | |
| TTGTCATGAAAACGTTACCT+AGG | - | tig0018782:155437-155456 | None:intergenic | 35.0% | |
| TATATAATTTAGCACGCGCT+AGG | + | tig0018782:155459-155478 | Msa1369450:intron | 35.0% | |
| TTCCATAGAGACAAAACATG+TGG | + | tig0018782:155701-155720 | Msa1369450:intron | 35.0% | |
| AAAACATGTGGCGTAATTGA+TGG | + | tig0018782:155713-155732 | Msa1369450:intron | 35.0% | |
| TCCAATGTCTAATATGTCGA+CGG | + | tig0018782:155818-155837 | Msa1369450:intron | 35.0% | |
| CATATCAACTTCCAACAAAC+CGG | - | tig0018782:156132-156151 | None:intergenic | 35.0% | |
| ACAAGACAACATTGCATTGT+TGG | - | tig0018782:156262-156281 | None:intergenic | 35.0% | |
| AATGTTGTCTTGTCATGAGA+AGG | + | tig0018782:156269-156288 | Msa1369450:intron | 35.0% | |
| ! | TAAGTGAAGGAATTTGGAGT+TGG | - | tig0018782:156420-156439 | None:intergenic | 35.0% |
| AACTCTCTTTCACTAAGTGA+AGG | - | tig0018782:156433-156452 | None:intergenic | 35.0% | |
| TACTACTCATATACTCTCTC+CGG | + | tig0018782:156809-156828 | Msa1369450:intron | 35.0% | |
| TTGCTTATAATAGTGACTGG+GGG | + | tig0018782:156943-156962 | Msa1369450:intron | 35.0% | |
| TATGTATGTTGTCCAAGTCA+AGG | + | tig0018782:157520-157539 | Msa1369450:intron | 35.0% | |
| ! | TTTGCATTGATACCTTGACT+TGG | - | tig0018782:157535-157554 | None:intergenic | 35.0% |
| CACAATTAAACATTGCGAGT+TGG | - | tig0018782:157775-157794 | None:intergenic | 35.0% | |
| ! | GTGTGCTGATAAAATGGATT+AGG | + | tig0018782:158035-158054 | Msa1369450:intron | 35.0% |
| GAAATACAAAGGACAAAGTG+CGG | + | tig0018782:158142-158161 | Msa1369450:CDS | 35.0% | |
| ! | AAGAGGAAGGGTATAGAATA+TGG | + | tig0018782:158198-158217 | Msa1369450:CDS | 35.0% |
| ! | AGAGGAAGGGTATAGAATAT+GGG | + | tig0018782:158199-158218 | Msa1369450:CDS | 35.0% |
| AAATGCAGTACATAGGATTG+GGG | - | tig0018782:158289-158308 | None:intergenic | 35.0% | |
| GAAATGCAGTACATAGGATT+GGG | - | tig0018782:158290-158309 | None:intergenic | 35.0% | |
| AGAAATGCAGTACATAGGAT+TGG | - | tig0018782:158291-158310 | None:intergenic | 35.0% | |
| TTTGTTGAGTACTACACAAG+TGG | - | tig0018782:158336-158355 | None:intergenic | 35.0% | |
| !!! | CTACGGTTGCTTTTCTTACA+TGG | - | tig0018782:154342-154361 | None:intergenic | 40.0% |
| TGCCATTGCCAACAAATTCT+TGG | + | tig0018782:154432-154451 | Msa1369450:five_prime_UTR | 40.0% | |
| !! | GTCCAAGAATTTGTTGGCAA+TGG | - | tig0018782:154437-154456 | None:intergenic | 40.0% |
| ! | GATATTGCAAGCAGTATTGG+CGG | + | tig0018782:154558-154577 | Msa1369450:CDS | 40.0% |
| !! | ATATTGCAAGCAGTATTGGC+GGG | + | tig0018782:154559-154578 | Msa1369450:CDS | 40.0% |
| !!! | GTTTTTGCTTCTGAGGCTTT+TGG | - | tig0018782:154642-154661 | None:intergenic | 40.0% |
| ! | TGAAGCAGTTTTTGCTTCTG+AGG | - | tig0018782:154649-154668 | None:intergenic | 40.0% |
| TTCTTCTTCTTCTTCGTCGT+CGG | + | tig0018782:154696-154715 | Msa1369450:CDS | 40.0% | |
| !! | GTTGATGATGATGAGAGGTA+TGG | + | tig0018782:154730-154749 | Msa1369450:CDS | 40.0% |
| CAAACAATAATGTGCGTCCT+TGG | + | tig0018782:154779-154798 | Msa1369450:CDS | 40.0% | |
| ACACAATTTCATCCACGATG+AGG | - | tig0018782:154879-154898 | None:intergenic | 40.0% | |
| CTACTACTCATCAAGATGCT+TGG | + | tig0018782:154929-154948 | Msa1369450:CDS | 40.0% | |
| TGAACATCGCCGAATCAAAT+GGG | - | tig0018782:155115-155134 | None:intergenic | 40.0% | |
| TTGAACATCGCCGAATCAAA+TGG | - | tig0018782:155116-155135 | None:intergenic | 40.0% | |
| !! | ATTTGATTCGGCGATGTTCA+AGG | + | tig0018782:155115-155134 | Msa1369450:CDS | 40.0% |
| !! | TTAGTAACGGGTAGATACGA+AGG | + | tig0018782:155224-155243 | Msa1369450:CDS | 40.0% |
| ACGGACAATTTGCATAACCA+AGG | + | tig0018782:155266-155285 | Msa1369450:CDS | 40.0% | |
| !!! | GCTACCAACGCCTTATTTTA+AGG | + | tig0018782:155297-155316 | Msa1369450:CDS | 40.0% |
| GATATAAGCCTCCTTAGGTT+AGG | + | tig0018782:155395-155414 | Msa1369450:intron | 40.0% | |
| ! | TGAGCTTAACTCAGTTGGTA+AGG | - | tig0018782:155581-155600 | None:intergenic | 40.0% |
| TACCAACTGAGTTAAGCTCA+CGG | + | tig0018782:155581-155600 | Msa1369450:intron | 40.0% | |
| CCAATGTCTAATATGTCGAC+GGG | + | tig0018782:155819-155838 | Msa1369450:intron | 40.0% | |
| ! | TTATTACGGCTAGTGGATAC+AGG | + | tig0018782:156227-156246 | Msa1369450:intron | 40.0% |
| AGACAACATTGCATTGTTGG+AGG | - | tig0018782:156259-156278 | None:intergenic | 40.0% | |
| GTAAGCAAGCATGCCAAATT+TGG | - | tig0018782:157499-157518 | None:intergenic | 40.0% | |
| !! | ATACAAGTCATCGATTCGGA+AGG | + | tig0018782:158169-158188 | Msa1369450:CDS | 40.0% |
| ! | GAGGAAGGGTATAGAATATG+GGG | + | tig0018782:158200-158219 | Msa1369450:CDS | 40.0% |
| !! | TATTGCAAGCAGTATTGGCG+GGG | + | tig0018782:154560-154579 | Msa1369450:CDS | 45.0% |
| ! | GCGGGGTTAACGTTTTTGTT+GGG | + | tig0018782:154577-154596 | Msa1369450:CDS | 45.0% |
| ! | CGGGGTTAACGTTTTTGTTG+GGG | + | tig0018782:154578-154597 | Msa1369450:CDS | 45.0% |
| !! | TGGTGGTTGATGATGATGAG+AGG | + | tig0018782:154725-154744 | Msa1369450:CDS | 45.0% |
| CATGCTTGTAGCAACGAAGT+GGG | - | tig0018782:154813-154832 | None:intergenic | 45.0% | |
| ACATGCTTGTAGCAACGAAG+TGG | - | tig0018782:154814-154833 | None:intergenic | 45.0% | |
| ! | AGATGCTTGGATTTTGGACG+TGG | + | tig0018782:154942-154961 | Msa1369450:CDS | 45.0% |
| CAGATGCGACCCATTTGATT+CGG | + | tig0018782:155103-155122 | Msa1369450:intron | 45.0% | |
| TTAGTACCACAGGGTTTGCA+GGG | - | tig0018782:155163-155182 | None:intergenic | 45.0% | |
| ATAAGCCTCCTTAGGTTAGG+TGG | + | tig0018782:155398-155417 | Msa1369450:intron | 45.0% | |
| ACTATCCACCTAACCTAAGG+AGG | - | tig0018782:155406-155425 | None:intergenic | 45.0% | |
| GTCACTATCCACCTAACCTA+AGG | - | tig0018782:155409-155428 | None:intergenic | 45.0% | |
| ACCAACTGAGTTAAGCTCAC+GGG | + | tig0018782:155582-155601 | Msa1369450:intron | 45.0% | |
| ! | CGCCACATGTTTTGTCTCTA+TGG | - | tig0018782:155706-155725 | None:intergenic | 45.0% |
| AGACATTGGATTTGGAGGAG+TGG | - | tig0018782:155808-155827 | None:intergenic | 45.0% | |
| CCCGTCGACATATTAGACAT+TGG | - | tig0018782:155822-155841 | None:intergenic | 45.0% | |
| !! | AATTGACTTGGCCGGTTTGT+TGG | + | tig0018782:156118-156137 | Msa1369450:intron | 45.0% |
| ! | TGCGTAATGGAGGAACTTCA+TGG | + | tig0018782:156529-156548 | Msa1369450:intron | 45.0% |
| GCTGCTGACAATGCCAAATT+TGG | + | tig0018782:157483-157502 | Msa1369450:intron | 45.0% | |
| ! | GGCAGGAGTGTGAAATACAA+AGG | + | tig0018782:158131-158150 | Msa1369450:intron | 45.0% |
| GATTCGGAAGGAGATTGAAG+AGG | + | tig0018782:158181-158200 | Msa1369450:CDS | 45.0% | |
| GGAAGGAGATTGAAGAGGAA+GGG | + | tig0018782:158186-158205 | Msa1369450:CDS | 45.0% | |
| !!! | TTTTATTTATTTTAAAGATT+TGG | - | tig0018782:156069-156088 | None:intergenic | 5.0% |
| ! | GGCGGGGTTAACGTTTTTGT+TGG | + | tig0018782:154576-154595 | Msa1369450:CDS | 50.0% |
| TTCTTCGTCGTCGGAGATGA+TGG | + | tig0018782:154705-154724 | Msa1369450:CDS | 50.0% | |
| GCATGACATGAACCTCATCG+TGG | + | tig0018782:154864-154883 | Msa1369450:CDS | 50.0% | |
| ATTCGGCGATGTTCAAGGCA+TGG | + | tig0018782:155120-155139 | Msa1369450:CDS | 50.0% | |
| CTTAGTACCACAGGGTTTGC+AGG | - | tig0018782:155164-155183 | None:intergenic | 50.0% | |
| !! | GTTGGTAGCCGATGAATCCT+TGG | - | tig0018782:155286-155305 | None:intergenic | 50.0% |
| GTGGATAGTGACTGCTACCT+AGG | + | tig0018782:155417-155436 | Msa1369450:intron | 50.0% | |
| CCAACTGAGTTAAGCTCACG+GGG | + | tig0018782:155583-155602 | Msa1369450:intron | 50.0% | |
| AGTTAAGCTCACGGGGACAA+TGG | + | tig0018782:155590-155609 | Msa1369450:intron | 50.0% | |
| GTTAAGCTCACGGGGACAAT+GGG | + | tig0018782:155591-155610 | Msa1369450:intron | 50.0% | |
| ! | GGGGAAAGGCACAATAGACT+TGG | + | tig0018782:157403-157422 | Msa1369450:intron | 50.0% |
| CGGAAGGAGATTGAAGAGGA+AGG | + | tig0018782:158185-158204 | Msa1369450:CDS | 50.0% | |
| !! | ACCAGTGGACTGATCTCCAA+GGG | + | tig0018782:158234-158253 | Msa1369450:CDS | 50.0% |
| !! | TGATCTCCAAGGGGAGTGTT+TGG | + | tig0018782:158244-158263 | Msa1369450:CDS | 50.0% |
| !! | GATCTCCAAGGGGAGTGTTT+GGG | + | tig0018782:158245-158264 | Msa1369450:CDS | 50.0% |
| ! | TTCGTCGTCGGAGATGATGG+TGG | + | tig0018782:154708-154727 | Msa1369450:CDS | 55.0% |
| ! | ATGAGAGGTATGGGCTGAGC+TGG | + | tig0018782:154740-154759 | Msa1369450:CDS | 55.0% |
| CGAAGTGGGACTGTCTTCCA+AGG | - | tig0018782:154799-154818 | None:intergenic | 55.0% | |
| AATGTGCCCTGCAAACCCTG+TGG | + | tig0018782:155154-155173 | Msa1369450:CDS | 55.0% | |
| CCCCGTGAGCTTAACTCAGT+TGG | - | tig0018782:155586-155605 | None:intergenic | 55.0% | |
| GGGGAAATGTAGGAGACCAG+TGG | + | tig0018782:158219-158238 | Msa1369450:CDS | 55.0% | |
| !! | GACCAGTGGACTGATCTCCA+AGG | + | tig0018782:158233-158252 | Msa1369450:CDS | 55.0% |
| !! | CCAGTGGACTGATCTCCAAG+GGG | + | tig0018782:158235-158254 | Msa1369450:CDS | 55.0% |
| GATTGCCCAAACACTCCCCT+TGG | - | tig0018782:158253-158272 | None:intergenic | 55.0% | |
| ! | AGAGGTATGGGCTGAGCTGG+AGG | + | tig0018782:154743-154762 | Msa1369450:CDS | 60.0% |
| ! | GTATGGGCTGAGCTGGAGGT+TGG | + | tig0018782:154747-154766 | Msa1369450:CDS | 60.0% |
| GCTGAGCTGGAGGTTGGCAA+TGG | + | tig0018782:154753-154772 | Msa1369450:CDS | 60.0% | |
| CCCCTTGGAGATCAGTCCAC+TGG | - | tig0018782:158238-158257 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018782 | gene | 154327 | 158398 | 154327 | ID=Msa1369450;Name=Msa1369450 |
| tig0018782 | mRNA | 154327 | 158398 | 154327 | ID=Msa1369450-mRNA-1;Parent=Msa1369450;Name=Msa1369450-mRNA-1;_AED=0.11;_eAED=0.11;_QI=214|1|1|1|1|1|3|85|287 |
| tig0018782 | exon | 154327 | 155013 | 154327 | ID=Msa1369450-mRNA-1:exon:1108;Parent=Msa1369450-mRNA-1 |
| tig0018782 | exon | 155106 | 155318 | 155106 | ID=Msa1369450-mRNA-1:exon:1109;Parent=Msa1369450-mRNA-1 |
| tig0018782 | exon | 158136 | 158398 | 158136 | ID=Msa1369450-mRNA-1:exon:1110;Parent=Msa1369450-mRNA-1 |
| tig0018782 | five_prime_UTR | 154327 | 154540 | 154327 | ID=Msa1369450-mRNA-1:five_prime_utr;Parent=Msa1369450-mRNA-1 |
| tig0018782 | CDS | 154541 | 155013 | 154541 | ID=Msa1369450-mRNA-1:cds;Parent=Msa1369450-mRNA-1 |
| tig0018782 | CDS | 155106 | 155318 | 155106 | ID=Msa1369450-mRNA-1:cds;Parent=Msa1369450-mRNA-1 |
| tig0018782 | CDS | 158136 | 158313 | 158136 | ID=Msa1369450-mRNA-1:cds;Parent=Msa1369450-mRNA-1 |
| tig0018782 | three_prime_UTR | 158314 | 158398 | 158314 | ID=Msa1369450-mRNA-1:three_prime_utr;Parent=Msa1369450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
