AlfalfaGEDB | Msa0071470

M. sativa cultivar zhongmu-4 / Msa0071470

KEGG: K08486
GO: -
PFAM: PF00804.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0071470	sp\|Q9ZSD4\|SY121_ARATH	72.201	259	72	0	27	285	30	288	3.07e-139	400

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0071470	B7FI20	99.020	306	3	0	1	306	1	306	0.0	622

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005260	Msa0071470	0.821313	4.315177e-53	-8.615850e-47
Msa0014280	Msa0071470	0.803956	2.721629e-49	-8.615850e-47
Msa0030800	Msa0071470	0.817458	3.263514e-52	-8.615850e-47
Msa0051480	Msa0071470	0.818720	1.691617e-52	-8.615850e-47
Msa0059900	Msa0071470	0.830106	3.540193e-55	-8.615850e-47
Msa0071470	Msa0078210	0.820510	6.603101e-53	-8.615850e-47
Msa0071470	Msa0086360	0.825302	5.047362e-54	-8.615850e-47
Msa0071470	Msa0090380	0.830262	3.241856e-55	-8.615850e-47
Msa0071470	Msa0092970	0.837481	5.068827e-57	-8.615850e-47
Msa0071470	Msa0104810	0.871786	5.239455e-67	-8.615850e-47
Msa0071470	Msa0118010	0.813849	2.078506e-51	-8.615850e-47
Msa0071470	Msa0119430	0.851120	1.091077e-60	-8.615850e-47
Msa0071470	Msa0137860	0.840968	6.314566e-58	-8.615850e-47
Msa0071470	Msa0146200	0.814163	1.771984e-51	-8.615850e-47
Msa0071470	Msa0151170	0.851870	6.696294e-61	-8.615850e-47
Msa0071470	Msa0162680	0.829935	3.895666e-55	-8.615850e-47
Msa0071470	Msa0185100	0.810763	9.806420e-51	-8.615850e-47
Msa0071470	Msa0193190	0.824975	6.031873e-54	-8.615850e-47
Msa0071470	Msa0196880	0.811326	7.404805e-51	-8.615850e-47
Msa0071470	Msa0202380	0.823264	1.521095e-53	-8.615850e-47
Msa0071470	Msa0225840	0.808026	3.791459e-50	-8.615850e-47
Msa0071470	Msa0260530	0.814655	1.379461e-51	-8.615850e-47
Msa0071470	Msa0264680	0.830699	2.535623e-55	-8.615850e-47
Msa0071470	Msa0267900	0.807366	5.236191e-50	-8.615850e-47
Msa0071470	Msa0273070	0.820957	5.211618e-53	-8.615850e-47
Msa0071470	Msa0276430	0.822580	2.195376e-53	-8.615850e-47
Msa0071470	Msa0302510	0.826093	3.277396e-54	-8.615850e-47
Msa0071470	Msa0302730	0.818816	1.608960e-52	-8.615850e-47
Msa0071470	Msa0306310	0.848538	5.752051e-60	-8.615850e-47
Msa0071470	Msa0316470	0.810472	1.133433e-50	-8.615850e-47
Msa0071470	Msa0339720	0.801703	7.946269e-49	-8.615850e-47
Msa0071470	Msa0345890	0.805794	1.124175e-49	-8.615850e-47
Msa0071470	Msa0345980	0.868881	4.695265e-66	-8.615850e-47
Msa0071470	Msa0383900	0.821730	3.456128e-53	-8.615850e-47
Msa0071470	Msa0393100	0.870339	1.572741e-66	-8.615850e-47
Msa0071470	Msa0434400	0.818270	2.139676e-52	-8.615850e-47
Msa0071470	Msa0438070	0.816397	5.648546e-52	-8.615850e-47
Msa0071470	Msa0443450	0.831464	1.644610e-55	-8.615850e-47
Msa0071470	Msa0476770	0.839729	1.331269e-57	-8.615850e-47
Msa0071470	Msa0488580	0.843430	1.407981e-58	-8.615850e-47
Msa0071470	Msa0497860	0.809079	2.259448e-50	-8.615850e-47
Msa0071470	Msa0568110	0.801262	9.781047e-49	-8.615850e-47
Msa0071470	Msa0590390	0.806665	7.368575e-50	-8.615850e-47
Msa0071470	Msa0662580	0.814234	1.709216e-51	-8.615850e-47
Msa0071470	Msa0685240	0.832511	9.068556e-56	-8.615850e-47
Msa0071470	Msa0704560	0.805938	1.048231e-49	-8.615850e-47
Msa0071470	Msa0729350	0.810045	1.401151e-50	-8.615850e-47
Msa0071470	Msa0740630	0.814529	1.471122e-51	-8.615850e-47
Msa0071470	Msa0746340	0.830062	3.628401e-55	-8.615850e-47
Msa0071470	Msa0753930	0.800500	1.399791e-48	-8.615850e-47
Msa0071470	Msa0804870	0.838169	3.373780e-57	-8.615850e-47
Msa0071470	Msa0807670	0.840434	8.716241e-58	-8.615850e-47
Msa0071470	Msa0807680	0.840993	6.220267e-58	-8.615850e-47
Msa0071470	Msa0816630	0.801065	1.073373e-48	-8.615850e-47
Msa0071470	Msa0820880	0.816504	5.344170e-52	-8.615850e-47
Msa0071470	Msa0826380	0.803273	3.772298e-49	-8.615850e-47
Msa0071470	Msa0826450	0.800484	1.410345e-48	-8.615850e-47
Msa0071470	Msa0829050	0.832215	1.073580e-55	-8.615850e-47
Msa0071470	Msa0832950	0.807443	5.042445e-50	-8.615850e-47
Msa0071470	Msa0848020	0.809398	1.929793e-50	-8.615850e-47
Msa0071470	Msa0859040	0.808890	2.479158e-50	-8.615850e-47
Msa0071470	Msa0874640	0.800929	1.144614e-48	-8.615850e-47
Msa0071470	Msa0945130	0.811448	6.966204e-51	-8.615850e-47
Msa0071470	Msa1025750	0.853414	2.427297e-61	-8.615850e-47
Msa0071470	Msa1026890	0.811041	8.538507e-51	-8.615850e-47
Msa0071470	Msa1027910	0.839012	2.044043e-57	-8.615850e-47
Msa0071470	Msa1030200	0.808743	2.665231e-50	-8.615850e-47
Msa0071470	Msa1030210	0.845829	3.180961e-59	-8.615850e-47
Msa0071470	Msa1064510	0.813981	1.943268e-51	-8.615850e-47
Msa0071470	Msa1069250	0.831158	1.956320e-55	-8.615850e-47
Msa0071470	Msa1084890	0.818379	2.021434e-52	-8.615850e-47
Msa0071470	Msa1089190	0.816338	5.821588e-52	-8.615850e-47
Msa0071470	Msa1102210	0.803562	3.284925e-49	-8.615850e-47
Msa0071470	Msa1120580	0.840460	8.579378e-58	-8.615850e-47
Msa0071470	Msa1131790	0.838083	3.550245e-57	-8.615850e-47
Msa0071470	Msa1157110	0.852369	4.830730e-61	-8.615850e-47
Msa0071470	Msa1184400	0.859552	3.821630e-63	-8.615850e-47
Msa0071470	Msa1218160	0.811213	7.834023e-51	-8.615850e-47
Msa0071470	Msa1224510	0.817159	3.810194e-52	-8.615850e-47
Msa0071470	Msa1225580	0.827788	1.289567e-54	-8.615850e-47
Msa0071470	Msa1246790	0.821726	3.464519e-53	-8.615850e-47
Msa0071470	Msa1286220	0.803515	3.360776e-49	-8.615850e-47
Msa0071470	Msa1307930	0.800652	1.303738e-48	-8.615850e-47
Msa0071470	Msa1355510	0.831643	1.485654e-55	-8.615850e-47
Msa0071470	Msa1364080	0.803579	3.259339e-49	-8.615850e-47
Msa0071470	Msa1369320	0.828781	7.428387e-55	-8.615850e-47
Msa0071470	Msa1369450	0.845828	3.182725e-59	-8.615850e-47
Msa0071470	Msa1413800	0.831469	1.639945e-55	-8.615850e-47
Msa0071470	Msa1420930	0.812788	3.554074e-51	-8.615850e-47
Msa0071470	Msa1422230	0.817100	3.928018e-52	-8.615850e-47
Msa0071470	Msa1424580	0.810580	1.073981e-50	-8.615850e-47
Msa0071470	Msa1427000	0.814287	1.663837e-51	-8.615850e-47
Msa0071470	Msa1433410	0.832555	8.844026e-56	-8.615850e-47
Msa0071470	Msa1435320	0.842138	3.105459e-58	-8.615850e-47
Msa0071470	Msa1436090	0.832166	1.103829e-55	-8.615850e-47
Msa0071470	Msa1439780	0.805751	1.147531e-49	-8.615850e-47
Msa0071470	Msa1443400	0.844088	9.384662e-59	-8.615850e-47
Msa0071470	Msa1443620	0.811221	7.804425e-51	-8.615850e-47
Msa0071470	Msa1448040	0.844528	7.152272e-59	-8.615850e-47
Msa0071470	Msa1452540	0.810295	1.237244e-50	-8.615850e-47
Msa0071470	Msa1459920	0.819923	8.998518e-53	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0071470	MtrunA17_Chr1g0177121	99.020	306	3	0	1	306	1	306	0.0	622
Msa0071470	MtrunA17_Chr7g0267551	69.686	287	74	2	1	287	1	274	2.72e-145	410
Msa0071470	MtrunA17_Chr1g0177131	65.870	293	92	3	1	287	1	291	1.98e-140	400
Msa0071470	MtrunA17_Chr4g0048121	59.028	288	109	3	1	287	1	280	8.39e-123	353
Msa0071470	MtrunA17_Chr2g0281201	58.800	250	103	0	55	304	1	250	2.98e-115	333
Msa0071470	MtrunA17_Chr5g0398891	43.581	296	156	3	1	285	1	296	5.82e-87	263
Msa0071470	MtrunA17_Chr6g0461261	44.251	287	153	1	1	287	1	280	1.15e-80	246
Msa0071470	MtrunA17_Chr2g0322801	42.657	286	160	2	1	285	1	283	9.15e-74	229
Msa0071470	MtrunA17_Chr5g0404401	40.000	285	159	4	1	283	1	275	1.82e-62	199
Msa0071470	MtrunA17_Chr8g0370611	36.667	120	74	2	1	119	1	119	2.79e-15	71.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0071470	AT3G11820.1	72.201	259	72	0	27	285	30	288	3.12e-140	400
Msa0071470	AT3G11820.2	72.763	257	70	0	29	285	1	257	6.88e-140	398
Msa0071470	AT1G61290.1	55.814	301	125	1	1	301	1	293	1.29e-126	363
Msa0071470	AT1G61290.2	55.814	301	125	1	1	301	1	293	1.29e-126	363
Msa0071470	AT1G11250.1	57.491	287	109	1	1	287	1	274	6.56e-123	354
Msa0071470	AT3G52400.1	62.199	291	104	3	1	287	1	289	1.41e-120	350
Msa0071470	AT4G03330.1	53.595	306	133	2	1	304	1	299	6.19e-112	326
Msa0071470	AT3G03800.2	44.251	287	150	3	1	285	1	279	1.90e-79	244
Msa0071470	AT3G03800.1	44.251	287	150	3	1	285	1	279	1.90e-79	244
Msa0071470	AT1G08560.1	43.003	293	152	5	1	285	1	286	3.10e-78	241
Msa0071470	AT5G08080.1	46.316	285	146	2	1	285	1	278	1.12e-71	224
Msa0071470	AT5G08080.4	46.316	285	146	2	1	285	1	278	1.12e-71	224
Msa0071470	AT5G08080.3	44.595	296	146	4	1	285	1	289	8.10e-70	219
Msa0071470	AT2G18260.2	35.606	264	163	2	40	303	46	302	3.11e-57	187
Msa0071470	AT2G18260.1	35.606	264	163	2	40	303	46	302	3.11e-57	187
Msa0071470	AT5G08080.5	42.512	207	112	2	1	207	1	200	2.67e-37	132
Msa0071470	AT5G08080.2	42.512	207	112	2	1	207	1	200	2.67e-37	132

Find 97 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CATGCCTCTCTTGAATTTCT+TGG	0.088352	1_2:+43414401	None:intergenic
GGAGCTTCACCAAGTGTTTA+TGG	0.187321	1_2:-43414347	Msa0071470:CDS
CTCCAATTCACATGCCAAAA+TGG	0.210351	1_2:+43413857	None:intergenic
AGCCACGTCAGCATCCATTT+TGG	0.265957	1_2:+43415617	None:intergenic
TGTTTGCTCTTCCTTGTTGC+TGG	0.276634	1_2:+43414437	None:intergenic
CAGAGGATATTTGTTGTCTA+AGG	0.290767	1_2:+43415418	None:intergenic
TTCATTCATATTCTCTAATC+AGG	0.295728	1_2:-43415989	Msa0071470:five_prime_UTR
TCCACTTTCTGCTATTCATT+TGG	0.309384	1_2:+43414206	None:intergenic
GAAAGATATTCGCTCCAAAA+TGG	0.314196	1_2:-43415631	Msa0071470:CDS
GTTTATGGACATGTCTGTTT+TGG	0.324253	1_2:-43414332	Msa0071470:CDS
TCCTCTCATGGGAGACTCTA+AGG	0.337274	1_2:+43415682	None:intergenic
ATATTATAATATTATAATCT+TGG	0.344798	1_2:-43414091	Msa0071470:three_prime_UTR
AATATGAATGATTTATTCTC+TGG	0.376169	1_2:-43415876	Msa0071470:CDS
TGGTTTGAGGAAGAAGCTTA+AGG	0.379675	1_2:-43415463	Msa0071470:CDS
AATCATTCATATTGTTTATG+TGG	0.404302	1_2:+43415886	None:intergenic
CACTGGACCGGGTTCGTCCT+CGG	0.407499	1_2:-43415511	Msa0071470:CDS
GAAGGGTCTTGCTCCTCTCA+TGG	0.411456	1_2:+43415670	None:intergenic
ATTAAATTTATATGTGTGGC+AGG	0.413330	1_2:-43413779	Msa0071470:three_prime_UTR
TCAATCACAAGGTGAACAAT+TGG	0.420883	1_2:-43414308	Msa0071470:CDS
CAAACTCCTACTAGCCTCAT+TGG	0.425618	1_2:+43415539	None:intergenic
AGTAGGAGTTTGCCTGGCAC+TGG	0.429966	1_2:-43415528	Msa0071470:CDS
TCACAGCTTTCGCGCTGTGA+AGG	0.430417	1_2:+43415652	None:intergenic
CACAGCTTTCGCGCTGTGAA+GGG	0.436831	1_2:+43415653	None:intergenic
GAGTTTGCCTGGCACTGGAC+CGG	0.438012	1_2:-43415523	Msa0071470:CDS
GACGAACCCGGTCCAGTGCC+AGG	0.441064	1_2:+43415516	None:intergenic
TTTCTCTCGGTTCCGCAACT+CGG	0.442343	1_2:-43415850	Msa0071470:CDS
TCCAATTCACATGCCAAAAT+GGG	0.446182	1_2:+43413858	None:intergenic
ATCACATGGTGGTGGTTGTC+CGG	0.452462	1_2:+43415816	None:intergenic
GGCATGTGAATTGGAGGAGA+AGG	0.454810	1_2:-43413850	Msa0071470:three_prime_UTR
TATTCTCTGGCTCTTTCTCT+CGG	0.459600	1_2:-43415863	Msa0071470:CDS
AGGATATAGATGAATGTTCA+TGG	0.464081	1_2:-43413830	Msa0071470:three_prime_UTR
AGTTTGCCTGGCACTGGACC+GGG	0.494865	1_2:-43415522	Msa0071470:CDS
CGTAGATACTATACTGTCAC+TGG	0.499164	1_2:-43415375	Msa0071470:CDS
AAGGGTCTTGCTCCTCTCAT+GGG	0.499489	1_2:+43415671	None:intergenic
TTATAATATTATAATCTTGG+TGG	0.509256	1_2:-43414088	Msa0071470:three_prime_UTR
TCCTACTAGCCTCATTGGAC+CGG	0.514248	1_2:+43415544	None:intergenic
CGTGCTAATTCGTATGTAAG+AGG	0.516664	1_2:-43414262	Msa0071470:CDS
CTCCAAAATGGATGCTGACG+TGG	0.519276	1_2:-43415619	Msa0071470:CDS
GTCCGGTCCGAGGACGAACC+CGG	0.520586	1_2:+43415504	None:intergenic
GACCGGGTTCGTCCTCGGAC+CGG	0.520941	1_2:-43415506	Msa0071470:CDS
TCCTAGCAACATGCAACTGT+TGG	0.522312	1_2:+43414233	None:intergenic
GAGGCTAGTAGGAGTTTGCC+TGG	0.523433	1_2:-43415534	Msa0071470:CDS
TAGTTGACCATGACCATCAT+GGG	0.525131	1_2:+43413911	None:intergenic
ACACTGGTTTGTGCGGTGTT+CGG	0.525134	1_2:+43415780	None:intergenic
ACCGGTCCAATGAGGCTAGT+AGG	0.527254	1_2:-43415545	Msa0071470:CDS
TACAGTTTCTCTATATTCAG+AGG	0.527444	1_2:+43415401	None:intergenic
GAAGAAGCTTAAGGATTCCA+TGG	0.529595	1_2:-43415454	Msa0071470:CDS
TGTGGTTTCAACTTCTGTTG+TGG	0.529973	1_2:+43415904	None:intergenic
AATAATGAGGAGAATTATGA+TGG	0.530230	1_2:+43414174	None:intergenic
TCATGCTGCCTTGACAACTC+TGG	0.535718	1_2:-43414022	Msa0071470:three_prime_UTR
ACCGGTCAAGTGCCTCGAGC+CGG	0.535814	1_2:+43415562	None:intergenic
AGAGATAGAGAGAAATCTCA+TGG	0.536636	1_2:-43414368	Msa0071470:CDS
CTAATTCGTATGTAAGAGGT+GGG	0.546081	1_2:-43414258	Msa0071470:CDS
TCCGGCTCGAGGCACTTGAC+CGG	0.547953	1_2:-43415563	Msa0071470:CDS
GTTTATTAAATTTATATGTG+TGG	0.551194	1_2:-43413783	Msa0071470:three_prime_UTR
GTTGATCTCCTCATTTCCAC+TGG	0.557952	1_2:-43415330	Msa0071470:intron
TATACATACCAGTGGAAATG+AGG	0.558156	1_2:+43415322	None:intergenic
AAGGTTGTTAAAGCTATCCA+TGG	0.560718	1_2:+43415437	None:intergenic
ACCAAATGAATAGCAGAAAG+TGG	0.561512	1_2:-43414207	Msa0071470:CDS
GGTGGCTATGACTAGTTCAA+AGG	0.564085	1_2:-43414070	Msa0071470:three_prime_UTR
ACAAGGAAGAGCAAACATCA+TGG	0.570164	1_2:-43414431	Msa0071470:CDS
CAGACATGTCCATAAACACT+TGG	0.571715	1_2:+43414338	None:intergenic
AGAAGTCGAAGGTGTTAAAG+AGG	0.572176	1_2:-43415736	Msa0071470:CDS
GCTAATTCGTATGTAAGAGG+TGG	0.577773	1_2:-43414259	Msa0071470:CDS
TCCAACAGTTGCATGTTGCT+AGG	0.578150	1_2:-43414234	Msa0071470:CDS
GAATTTGTCGAGATGAACAC+TGG	0.583607	1_2:+43415764	None:intergenic
CATCTGTGGTGAGTGGTTTG+AGG	0.587043	1_2:-43415476	Msa0071470:CDS
GTAGTTGACCATGACCATCA+TGG	0.590362	1_2:+43413910	None:intergenic
TCACCACAGATGTTCTAGTC+CGG	0.594304	1_2:+43415487	None:intergenic
AAGCTAAACTTGTTAAACTC+CGG	0.596720	1_2:-43415581	Msa0071470:CDS
GCCTTAGAGTCTCCCATGAG+AGG	0.597298	1_2:-43415683	Msa0071470:CDS
CTAGAACCCCATGATGGTCA+TGG	0.600424	1_2:-43413918	Msa0071470:three_prime_UTR
GTGATGACATTTCGATCACA+TGG	0.606578	1_2:+43415802	None:intergenic
ATACCATGCCAGAGTTGTCA+AGG	0.609171	1_2:+43414014	None:intergenic
ACATTTCGATCACATGGTGG+TGG	0.613048	1_2:+43415808	None:intergenic
CTGCCTTGACAACTCTGGCA+TGG	0.613990	1_2:-43414017	Msa0071470:three_prime_UTR
GCGAAACTTGATCCGAGTTG+CGG	0.621819	1_2:+43415838	None:intergenic
AGGTGTTAAAGAGGAACTGA+AGG	0.625874	1_2:-43415727	Msa0071470:CDS
CAACTCGGATCAAGTTTCGC+CGG	0.628630	1_2:-43415835	Msa0071470:CDS
TGATTTCTAGAACCCCATGA+TGG	0.630801	1_2:-43413924	Msa0071470:three_prime_UTR
CTATGATCAAGATAATAATG+AGG	0.639529	1_2:+43414161	None:intergenic
AAATTCTTCGAAGAAGTCGA+AGG	0.646226	1_2:-43415747	Msa0071470:CDS
ACGAATTAGCACGTGCCACG+TGG	0.646541	1_2:+43414272	None:intergenic
GGCACTTGACCGGTCCAATG+AGG	0.650152	1_2:-43415553	Msa0071470:CDS
GGTCATGGTCAACTACCTTG+AGG	0.658100	1_2:-43413903	Msa0071470:three_prime_UTR
CAATCCAAGAAATTCAAGAG+AGG	0.658855	1_2:-43414405	Msa0071470:CDS
ACTTGTTAAACTCCGGCTCG+AGG	0.660615	1_2:-43415574	Msa0071470:CDS
ACTAGAACATCTGTGGTGAG+TGG	0.667098	1_2:-43415483	Msa0071470:CDS
AGTGGAAATGAGGAGATCAA+CGG	0.679065	1_2:+43415332	None:intergenic
GGACCGGACTAGAACATCTG+TGG	0.682428	1_2:-43415490	Msa0071470:CDS
AGATGTTCTAGTCCGGTCCG+AGG	0.692794	1_2:+43415494	None:intergenic
GAGATGAACACTGGTTTGTG+CGG	0.693487	1_2:+43415773	None:intergenic
TAATTCGTATGTAAGAGGTG+GGG	0.706870	1_2:-43414257	Msa0071470:CDS
AGTTGACCATGACCATCATG+GGG	0.726314	1_2:+43413912	None:intergenic
ATATAGATGAATGTTCATGG+TGG	0.734211	1_2:-43413827	Msa0071470:three_prime_UTR
ATGACATTTCGATCACATGG+TGG	0.749280	1_2:+43415805	None:intergenic
GGATAATATTGAAAGCCACG+TGG	0.768363	1_2:-43414287	Msa0071470:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTAAATTTCATAAAGATTTA+TGG	+	chr1_2:43414605-43414624	None:intergenic	10.0%
!!	TATAACATATATAAGTATAT+TGG	+	chr1_2:43415055-43415074	None:intergenic	10.0%
!!	GAATAAGAAAAAAATATATA+AGG	+	chr1_2:43416001-43416020	None:intergenic	10.0%
!!	TTAAATTTCATAAAGATTTA+TGG	+	chr1_2:43414605-43414624	None:intergenic	10.0%
!!	TATAACATATATAAGTATAT+TGG	+	chr1_2:43415055-43415074	None:intergenic	10.0%
!!	GAATAAGAAAAAAATATATA+AGG	+	chr1_2:43416001-43416020	None:intergenic	10.0%
!!!	ATACATTTTAATAATTCATG+TGG	-	chr1_2:43414483-43414502	Msa0071470:intron	15.0%
!!!	TGTAGATTAATCTATTTTTA+AGG	-	chr1_2:43414566-43414585	Msa0071470:intron	15.0%
!!!	TACTTGATTCATTTATTTTT+AGG	+	chr1_2:43414981-43415000	None:intergenic	15.0%
!!	AATAAAAAGAAACTTAAGTA+TGG	+	chr1_2:43415023-43415042	None:intergenic	15.0%
!!	TTATAATATTATAATCTTGG+TGG	-	chr1_2:43415620-43415639	Msa0071470:CDS	15.0%
!!!	ATATTTTTTCATATATTGGT+TGG	-	chr1_2:43415724-43415743	Msa0071470:CDS	15.0%
!!	GTTTATTAAATTTATATGTG+TGG	-	chr1_2:43415925-43415944	Msa0071470:five_prime_UTR	15.0%
!!!	ATACATTTTAATAATTCATG+TGG	-	chr1_2:43414483-43414502	Msa0071470:intron	15.0%
!!!	TGTAGATTAATCTATTTTTA+AGG	-	chr1_2:43414566-43414585	Msa0071470:intron	15.0%
!!!	TACTTGATTCATTTATTTTT+AGG	+	chr1_2:43414981-43415000	None:intergenic	15.0%
!!	AATAAAAAGAAACTTAAGTA+TGG	+	chr1_2:43415023-43415042	None:intergenic	15.0%
!!	TTATAATATTATAATCTTGG+TGG	-	chr1_2:43415620-43415639	Msa0071470:CDS	15.0%
!!!	ATATTTTTTCATATATTGGT+TGG	-	chr1_2:43415724-43415743	Msa0071470:CDS	15.0%
!!	GTTTATTAAATTTATATGTG+TGG	-	chr1_2:43415925-43415944	Msa0071470:five_prime_UTR	15.0%
!!	AATCATTCATATTGTTTATG+TGG	+	chr1_2:43413825-43413844	None:intergenic	20.0%
!!	AATATGAATGATTTATTCTC+TGG	-	chr1_2:43413832-43413851	Msa0071470:three_prime_UTR	20.0%
!!!	ATTTTAATAATTCATGTGGA+AGG	-	chr1_2:43414487-43414506	Msa0071470:intron	20.0%
!!!	TTTTTATTTCAGAATCGAAA+GGG	+	chr1_2:43414673-43414692	None:intergenic	20.0%
!!!	ATTTTTATTTCAGAATCGAA+AGG	+	chr1_2:43414674-43414693	None:intergenic	20.0%
!!!	ATCTTAGTTAATTTTCTTTC+CGG	-	chr1_2:43414762-43414781	Msa0071470:intron	20.0%
!!!	AATGGTTTTAGATTCAAATT+CGG	+	chr1_2:43414910-43414929	None:intergenic	20.0%
!!!	TTGAAGTGAAAGTTTTTAAT+AGG	-	chr1_2:43415124-43415143	Msa0071470:intron	20.0%
!!!	AACTATTTTTTAAGGACAAT+AGG	+	chr1_2:43415578-43415597	None:intergenic	20.0%
!!!	AGTCTCAAAACTATTTTTTA+AGG	+	chr1_2:43415586-43415605	None:intergenic	20.0%
!!	AATCATTCATATTGTTTATG+TGG	+	chr1_2:43413825-43413844	None:intergenic	20.0%
!!	AATATGAATGATTTATTCTC+TGG	-	chr1_2:43413832-43413851	Msa0071470:three_prime_UTR	20.0%
!!!	ATTTTAATAATTCATGTGGA+AGG	-	chr1_2:43414487-43414506	Msa0071470:intron	20.0%
!!!	TTTTTATTTCAGAATCGAAA+GGG	+	chr1_2:43414673-43414692	None:intergenic	20.0%
!!!	ATTTTTATTTCAGAATCGAA+AGG	+	chr1_2:43414674-43414693	None:intergenic	20.0%
!!!	ATCTTAGTTAATTTTCTTTC+CGG	-	chr1_2:43414762-43414781	Msa0071470:intron	20.0%
!!!	AATGGTTTTAGATTCAAATT+CGG	+	chr1_2:43414910-43414929	None:intergenic	20.0%
!!!	TTGAAGTGAAAGTTTTTAAT+AGG	-	chr1_2:43415124-43415143	Msa0071470:intron	20.0%
!!!	AACTATTTTTTAAGGACAAT+AGG	+	chr1_2:43415578-43415597	None:intergenic	20.0%
!!!	AGTCTCAAAACTATTTTTTA+AGG	+	chr1_2:43415586-43415605	None:intergenic	20.0%
!	TTCATTCATATTCTCTAATC+AGG	-	chr1_2:43413719-43413738	Msa0071470:three_prime_UTR	25.0%
!!	GTGATAATGTTGATATTGTT+AGG	-	chr1_2:43414870-43414889	Msa0071470:intron	25.0%
!	AACTTACACATACAACTAAA+TGG	+	chr1_2:43414928-43414947	None:intergenic	25.0%
!	TGTATAAAATCCAGAGTATA+TGG	-	chr1_2:43415075-43415094	Msa0071470:intron	25.0%
!	AAAAAAGAAACCATATACTC+TGG	+	chr1_2:43415088-43415107	None:intergenic	25.0%
!!	AAGTGAAAGTTTTTAATAGG+AGG	-	chr1_2:43415127-43415146	Msa0071470:intron	25.0%
!!	ACATCTTTTTAATGTACCAT+AGG	-	chr1_2:43415218-43415237	Msa0071470:intron	25.0%
!	AATAATGAGGAGAATTATGA+TGG	+	chr1_2:43415537-43415556	None:intergenic	25.0%
!	CTATGATCAAGATAATAATG+AGG	+	chr1_2:43415550-43415569	None:intergenic	25.0%
!!!	TAGTTTTGAGACTTTTCAAA+TGG	-	chr1_2:43415593-43415612	Msa0071470:CDS	25.0%
!!!	AGTTTTGAGACTTTTCAAAT+GGG	-	chr1_2:43415594-43415613	Msa0071470:CDS	25.0%
!!!	TTTTCATATATTGGTTGGTT+TGG	-	chr1_2:43415729-43415748	Msa0071470:CDS	25.0%
!!	TCAAGAATTTTATCCCATTT+TGG	-	chr1_2:43415837-43415856	Msa0071470:CDS	25.0%
!	ATTAAATTTATATGTGTGGC+AGG	-	chr1_2:43415929-43415948	Msa0071470:five_prime_UTR	25.0%
!	TTCATTCATATTCTCTAATC+AGG	-	chr1_2:43413719-43413738	Msa0071470:three_prime_UTR	25.0%
!!	GTGATAATGTTGATATTGTT+AGG	-	chr1_2:43414870-43414889	Msa0071470:intron	25.0%
!	AACTTACACATACAACTAAA+TGG	+	chr1_2:43414928-43414947	None:intergenic	25.0%
!	TGTATAAAATCCAGAGTATA+TGG	-	chr1_2:43415075-43415094	Msa0071470:intron	25.0%
!	AAAAAAGAAACCATATACTC+TGG	+	chr1_2:43415088-43415107	None:intergenic	25.0%
!!	AAGTGAAAGTTTTTAATAGG+AGG	-	chr1_2:43415127-43415146	Msa0071470:intron	25.0%
!!	ACATCTTTTTAATGTACCAT+AGG	-	chr1_2:43415218-43415237	Msa0071470:intron	25.0%
!	AATAATGAGGAGAATTATGA+TGG	+	chr1_2:43415537-43415556	None:intergenic	25.0%
!	CTATGATCAAGATAATAATG+AGG	+	chr1_2:43415550-43415569	None:intergenic	25.0%
!!!	TAGTTTTGAGACTTTTCAAA+TGG	-	chr1_2:43415593-43415612	Msa0071470:CDS	25.0%
!!!	AGTTTTGAGACTTTTCAAAT+GGG	-	chr1_2:43415594-43415613	Msa0071470:CDS	25.0%
!!!	TTTTCATATATTGGTTGGTT+TGG	-	chr1_2:43415729-43415748	Msa0071470:CDS	25.0%
!!	TCAAGAATTTTATCCCATTT+TGG	-	chr1_2:43415837-43415856	Msa0071470:CDS	25.0%
!	ATTAAATTTATATGTGTGGC+AGG	-	chr1_2:43415929-43415948	Msa0071470:five_prime_UTR	25.0%
	TGTTGTGGAAGAAAAAATAG+AGG	+	chr1_2:43413792-43413811	None:intergenic	30.0%
!!	AAGCTAAACTTGTTAAACTC+CGG	-	chr1_2:43414127-43414146	Msa0071470:exon	30.0%
	TACAGTTTCTCTATATTCAG+AGG	+	chr1_2:43414310-43414329	None:intergenic	30.0%
	TGATGATATATACATACCAG+TGG	+	chr1_2:43414397-43414416	None:intergenic	30.0%
	ATGTACCTTCATACAACTTT+GGG	-	chr1_2:43414730-43414749	Msa0071470:intron	30.0%
	AAAATCCCAAAGTTGTATGA+AGG	+	chr1_2:43414738-43414757	None:intergenic	30.0%
	TCAAACAGAGTAATTTGATC+CGG	+	chr1_2:43414784-43414803	None:intergenic	30.0%
	TAATGTTGATATTGTTAGGC+TGG	-	chr1_2:43414874-43414893	Msa0071470:intron	30.0%
	TTAGATTCAAATTCGGTTGA+AGG	+	chr1_2:43414903-43414922	None:intergenic	30.0%
	TTGTATGTGTAAGTTTCAGA+TGG	-	chr1_2:43414933-43414952	Msa0071470:intron	30.0%
!	TGAAAGTTTTTAATAGGAGG+TGG	-	chr1_2:43415130-43415149	Msa0071470:intron	30.0%
	AAATGTTTCACTTTCACCTA+TGG	+	chr1_2:43415237-43415256	None:intergenic	30.0%
	AGGATATAGATGAATGTTCA+TGG	-	chr1_2:43415878-43415897	Msa0071470:exon	30.0%
	ATATAGATGAATGTTCATGG+TGG	-	chr1_2:43415881-43415900	Msa0071470:exon	30.0%
!	GGTGTAATTCTTTTGTACAA+TGG	+	chr1_2:43415980-43415999	None:intergenic	30.0%
	TGTTGTGGAAGAAAAAATAG+AGG	+	chr1_2:43413792-43413811	None:intergenic	30.0%
!!	AAGCTAAACTTGTTAAACTC+CGG	-	chr1_2:43414127-43414146	Msa0071470:exon	30.0%
	TACAGTTTCTCTATATTCAG+AGG	+	chr1_2:43414310-43414329	None:intergenic	30.0%
	TGATGATATATACATACCAG+TGG	+	chr1_2:43414397-43414416	None:intergenic	30.0%
	ATGTACCTTCATACAACTTT+GGG	-	chr1_2:43414730-43414749	Msa0071470:intron	30.0%
	AAAATCCCAAAGTTGTATGA+AGG	+	chr1_2:43414738-43414757	None:intergenic	30.0%
	TCAAACAGAGTAATTTGATC+CGG	+	chr1_2:43414784-43414803	None:intergenic	30.0%
	TAATGTTGATATTGTTAGGC+TGG	-	chr1_2:43414874-43414893	Msa0071470:intron	30.0%
	TTAGATTCAAATTCGGTTGA+AGG	+	chr1_2:43414903-43414922	None:intergenic	30.0%
	TTGTATGTGTAAGTTTCAGA+TGG	-	chr1_2:43414933-43414952	Msa0071470:intron	30.0%
!	TGAAAGTTTTTAATAGGAGG+TGG	-	chr1_2:43415130-43415149	Msa0071470:intron	30.0%
	AAATGTTTCACTTTCACCTA+TGG	+	chr1_2:43415237-43415256	None:intergenic	30.0%
	AGGATATAGATGAATGTTCA+TGG	-	chr1_2:43415878-43415897	Msa0071470:exon	30.0%
	ATATAGATGAATGTTCATGG+TGG	-	chr1_2:43415881-43415900	Msa0071470:exon	30.0%
!	GGTGTAATTCTTTTGTACAA+TGG	+	chr1_2:43415980-43415999	None:intergenic	30.0%
	GGAAGAAAAAATAGAGGAGA+AGG	+	chr1_2:43413786-43413805	None:intergenic	35.0%
	AAATTCTTCGAAGAAGTCGA+AGG	-	chr1_2:43413961-43413980	Msa0071470:three_prime_UTR	35.0%
	GAAAGATATTCGCTCCAAAA+TGG	-	chr1_2:43414077-43414096	Msa0071470:three_prime_UTR	35.0%
	AAGGTTGTTAAAGCTATCCA+TGG	+	chr1_2:43414274-43414293	None:intergenic	35.0%
!!	CAGAGGATATTTGTTGTCTA+AGG	+	chr1_2:43414293-43414312	None:intergenic	35.0%
	TATACATACCAGTGGAAATG+AGG	+	chr1_2:43414389-43414408	None:intergenic	35.0%
!!	CATGTGGAAGGATTTTGAAA+AGG	-	chr1_2:43414499-43414518	Msa0071470:intron	35.0%
	TTGAAAAGGAAAGAGAAGAG+AGG	-	chr1_2:43414513-43414532	Msa0071470:intron	35.0%
	TGAAAAGGAAAGAGAAGAGA+GGG	-	chr1_2:43414514-43414533	Msa0071470:intron	35.0%
!!	TGAAGGTACATGGAGAATTT+TGG	+	chr1_2:43414721-43414740	None:intergenic	35.0%
!	CAAAGTTGTATGAAGGTACA+TGG	+	chr1_2:43414731-43414750	None:intergenic	35.0%
	CATGTACCTTCATACAACTT+TGG	-	chr1_2:43414729-43414748	Msa0071470:intron	35.0%
	ATCACTTGAGCTGAATCTTA+TGG	+	chr1_2:43414855-43414874	None:intergenic	35.0%
	CAATCCAAGAAATTCAAGAG+AGG	-	chr1_2:43415303-43415322	Msa0071470:intron	35.0%
	AGAGATAGAGAGAAATCTCA+TGG	-	chr1_2:43415340-43415359	Msa0071470:CDS	35.0%
!	GTTTATGGACATGTCTGTTT+TGG	-	chr1_2:43415376-43415395	Msa0071470:CDS	35.0%
!!!	TCTGTTTTGGTTCAATCACA+AGG	-	chr1_2:43415389-43415408	Msa0071470:CDS	35.0%
	TCAATCACAAGGTGAACAAT+TGG	-	chr1_2:43415400-43415419	Msa0071470:CDS	35.0%
	CTAATTCGTATGTAAGAGGT+GGG	-	chr1_2:43415450-43415469	Msa0071470:CDS	35.0%
	TAATTCGTATGTAAGAGGTG+GGG	-	chr1_2:43415451-43415470	Msa0071470:CDS	35.0%
	ACCAAATGAATAGCAGAAAG+TGG	-	chr1_2:43415501-43415520	Msa0071470:CDS	35.0%
	TCCACTTTCTGCTATTCATT+TGG	+	chr1_2:43415505-43415524	None:intergenic	35.0%
!!!	TCTTGACTAGTTTTTCCTCA+AGG	+	chr1_2:43415823-43415842	None:intergenic	35.0%
	TCCAATTCACATGCCAAAAT+GGG	+	chr1_2:43415853-43415872	None:intergenic	35.0%
	GGAAGAAAAAATAGAGGAGA+AGG	+	chr1_2:43413786-43413805	None:intergenic	35.0%
	AAATTCTTCGAAGAAGTCGA+AGG	-	chr1_2:43413961-43413980	Msa0071470:three_prime_UTR	35.0%
	GAAAGATATTCGCTCCAAAA+TGG	-	chr1_2:43414077-43414096	Msa0071470:three_prime_UTR	35.0%
	AAGGTTGTTAAAGCTATCCA+TGG	+	chr1_2:43414274-43414293	None:intergenic	35.0%
!!	CAGAGGATATTTGTTGTCTA+AGG	+	chr1_2:43414293-43414312	None:intergenic	35.0%
	TATACATACCAGTGGAAATG+AGG	+	chr1_2:43414389-43414408	None:intergenic	35.0%
!!	CATGTGGAAGGATTTTGAAA+AGG	-	chr1_2:43414499-43414518	Msa0071470:intron	35.0%
	TTGAAAAGGAAAGAGAAGAG+AGG	-	chr1_2:43414513-43414532	Msa0071470:intron	35.0%
	TGAAAAGGAAAGAGAAGAGA+GGG	-	chr1_2:43414514-43414533	Msa0071470:intron	35.0%
!!	TGAAGGTACATGGAGAATTT+TGG	+	chr1_2:43414721-43414740	None:intergenic	35.0%
!	CAAAGTTGTATGAAGGTACA+TGG	+	chr1_2:43414731-43414750	None:intergenic	35.0%
	CATGTACCTTCATACAACTT+TGG	-	chr1_2:43414729-43414748	Msa0071470:intron	35.0%
	ATCACTTGAGCTGAATCTTA+TGG	+	chr1_2:43414855-43414874	None:intergenic	35.0%
	CAATCCAAGAAATTCAAGAG+AGG	-	chr1_2:43415303-43415322	Msa0071470:intron	35.0%
	AGAGATAGAGAGAAATCTCA+TGG	-	chr1_2:43415340-43415359	Msa0071470:CDS	35.0%
!	GTTTATGGACATGTCTGTTT+TGG	-	chr1_2:43415376-43415395	Msa0071470:CDS	35.0%
!!!	TCTGTTTTGGTTCAATCACA+AGG	-	chr1_2:43415389-43415408	Msa0071470:CDS	35.0%
	TCAATCACAAGGTGAACAAT+TGG	-	chr1_2:43415400-43415419	Msa0071470:CDS	35.0%
	CTAATTCGTATGTAAGAGGT+GGG	-	chr1_2:43415450-43415469	Msa0071470:CDS	35.0%
	TAATTCGTATGTAAGAGGTG+GGG	-	chr1_2:43415451-43415470	Msa0071470:CDS	35.0%
	ACCAAATGAATAGCAGAAAG+TGG	-	chr1_2:43415501-43415520	Msa0071470:CDS	35.0%
	TCCACTTTCTGCTATTCATT+TGG	+	chr1_2:43415505-43415524	None:intergenic	35.0%
!!!	TCTTGACTAGTTTTTCCTCA+AGG	+	chr1_2:43415823-43415842	None:intergenic	35.0%
	TCCAATTCACATGCCAAAAT+GGG	+	chr1_2:43415853-43415872	None:intergenic	35.0%
	TGTGGTTTCAACTTCTGTTG+TGG	+	chr1_2:43413807-43413826	None:intergenic	40.0%
!!	TATTCTCTGGCTCTTTCTCT+CGG	-	chr1_2:43413845-43413864	Msa0071470:three_prime_UTR	40.0%
	ATGACATTTCGATCACATGG+TGG	+	chr1_2:43413906-43413925	None:intergenic	40.0%
	GTGATGACATTTCGATCACA+TGG	+	chr1_2:43413909-43413928	None:intergenic	40.0%
	GAATTTGTCGAGATGAACAC+TGG	+	chr1_2:43413947-43413966	None:intergenic	40.0%
!!	AGAAGTCGAAGGTGTTAAAG+AGG	-	chr1_2:43413972-43413991	Msa0071470:three_prime_UTR	40.0%
	AGGTGTTAAAGAGGAACTGA+AGG	-	chr1_2:43413981-43414000	Msa0071470:three_prime_UTR	40.0%
	TGGTTTGAGGAAGAAGCTTA+AGG	-	chr1_2:43414245-43414264	Msa0071470:CDS	40.0%
	GAAGAAGCTTAAGGATTCCA+TGG	-	chr1_2:43414254-43414273	Msa0071470:CDS	40.0%
	CGTAGATACTATACTGTCAC+TGG	-	chr1_2:43414333-43414352	Msa0071470:CDS	40.0%
!!	AGATCAACGGTTTTGTCATC+AGG	+	chr1_2:43414366-43414385	None:intergenic	40.0%
	AGTGGAAATGAGGAGATCAA+CGG	+	chr1_2:43414379-43414398	None:intergenic	40.0%
!	AGGTACATGGAGAATTTTGG+AGG	+	chr1_2:43414718-43414737	None:intergenic	40.0%
	GGTGTTTACCACTTCGTTTA+CGG	-	chr1_2:43414954-43414973	Msa0071470:intron	40.0%
!!	TTTTAGGTCCGTAAACGAAG+TGG	+	chr1_2:43414965-43414984	None:intergenic	40.0%
	CAAAAAGCAATCCAGCAACA+AGG	-	chr1_2:43415260-43415279	Msa0071470:intron	40.0%
	ACAAGGAAGAGCAAACATCA+TGG	-	chr1_2:43415277-43415296	Msa0071470:intron	40.0%
	CATGCCTCTCTTGAATTTCT+TGG	+	chr1_2:43415310-43415329	None:intergenic	40.0%
	CAGACATGTCCATAAACACT+TGG	+	chr1_2:43415373-43415392	None:intergenic	40.0%
	GGATAATATTGAAAGCCACG+TGG	-	chr1_2:43415421-43415440	Msa0071470:CDS	40.0%
	CGTGCTAATTCGTATGTAAG+AGG	-	chr1_2:43415446-43415465	Msa0071470:CDS	40.0%
	GCTAATTCGTATGTAAGAGG+TGG	-	chr1_2:43415449-43415468	Msa0071470:CDS	40.0%
!!	TGATTTCTAGAACCCCATGA+TGG	-	chr1_2:43415784-43415803	Msa0071470:CDS	40.0%
	TAGTTGACCATGACCATCAT+GGG	+	chr1_2:43415800-43415819	None:intergenic	40.0%
!!	TCCCATTTTGGCATGTGAAT+TGG	-	chr1_2:43415849-43415868	Msa0071470:CDS	40.0%
	CTCCAATTCACATGCCAAAA+TGG	+	chr1_2:43415854-43415873	None:intergenic	40.0%
!!	CATTTTGGCATGTGAATTGG+AGG	-	chr1_2:43415852-43415871	Msa0071470:CDS	40.0%
!!	GCAGGAGTTCAATTGTTTTG+CGG	-	chr1_2:43415947-43415966	Msa0071470:five_prime_UTR	40.0%
!!	CAGGAGTTCAATTGTTTTGC+GGG	-	chr1_2:43415948-43415967	Msa0071470:five_prime_UTR	40.0%
	TGTGGTTTCAACTTCTGTTG+TGG	+	chr1_2:43413807-43413826	None:intergenic	40.0%
!!	TATTCTCTGGCTCTTTCTCT+CGG	-	chr1_2:43413845-43413864	Msa0071470:three_prime_UTR	40.0%
	ATGACATTTCGATCACATGG+TGG	+	chr1_2:43413906-43413925	None:intergenic	40.0%
	GTGATGACATTTCGATCACA+TGG	+	chr1_2:43413909-43413928	None:intergenic	40.0%
	GAATTTGTCGAGATGAACAC+TGG	+	chr1_2:43413947-43413966	None:intergenic	40.0%
!!	AGAAGTCGAAGGTGTTAAAG+AGG	-	chr1_2:43413972-43413991	Msa0071470:three_prime_UTR	40.0%
	AGGTGTTAAAGAGGAACTGA+AGG	-	chr1_2:43413981-43414000	Msa0071470:three_prime_UTR	40.0%
	TGGTTTGAGGAAGAAGCTTA+AGG	-	chr1_2:43414245-43414264	Msa0071470:CDS	40.0%
	GAAGAAGCTTAAGGATTCCA+TGG	-	chr1_2:43414254-43414273	Msa0071470:CDS	40.0%
	CGTAGATACTATACTGTCAC+TGG	-	chr1_2:43414333-43414352	Msa0071470:CDS	40.0%
!!	AGATCAACGGTTTTGTCATC+AGG	+	chr1_2:43414366-43414385	None:intergenic	40.0%
	AGTGGAAATGAGGAGATCAA+CGG	+	chr1_2:43414379-43414398	None:intergenic	40.0%
!	AGGTACATGGAGAATTTTGG+AGG	+	chr1_2:43414718-43414737	None:intergenic	40.0%
	GGTGTTTACCACTTCGTTTA+CGG	-	chr1_2:43414954-43414973	Msa0071470:intron	40.0%
!!	TTTTAGGTCCGTAAACGAAG+TGG	+	chr1_2:43414965-43414984	None:intergenic	40.0%
	CAAAAAGCAATCCAGCAACA+AGG	-	chr1_2:43415260-43415279	Msa0071470:intron	40.0%
	ACAAGGAAGAGCAAACATCA+TGG	-	chr1_2:43415277-43415296	Msa0071470:intron	40.0%
	CATGCCTCTCTTGAATTTCT+TGG	+	chr1_2:43415310-43415329	None:intergenic	40.0%
	CAGACATGTCCATAAACACT+TGG	+	chr1_2:43415373-43415392	None:intergenic	40.0%
	GGATAATATTGAAAGCCACG+TGG	-	chr1_2:43415421-43415440	Msa0071470:CDS	40.0%
	CGTGCTAATTCGTATGTAAG+AGG	-	chr1_2:43415446-43415465	Msa0071470:CDS	40.0%
	GCTAATTCGTATGTAAGAGG+TGG	-	chr1_2:43415449-43415468	Msa0071470:CDS	40.0%
!!	TGATTTCTAGAACCCCATGA+TGG	-	chr1_2:43415784-43415803	Msa0071470:CDS	40.0%
	TAGTTGACCATGACCATCAT+GGG	+	chr1_2:43415800-43415819	None:intergenic	40.0%
!!	TCCCATTTTGGCATGTGAAT+TGG	-	chr1_2:43415849-43415868	Msa0071470:CDS	40.0%
	CTCCAATTCACATGCCAAAA+TGG	+	chr1_2:43415854-43415873	None:intergenic	40.0%
!!	CATTTTGGCATGTGAATTGG+AGG	-	chr1_2:43415852-43415871	Msa0071470:CDS	40.0%
!!	GCAGGAGTTCAATTGTTTTG+CGG	-	chr1_2:43415947-43415966	Msa0071470:five_prime_UTR	40.0%
!!	CAGGAGTTCAATTGTTTTGC+GGG	-	chr1_2:43415948-43415967	Msa0071470:five_prime_UTR	40.0%
	ACATTTCGATCACATGGTGG+TGG	+	chr1_2:43413903-43413922	None:intergenic	45.0%
!!	GAGATGAACACTGGTTTGTG+CGG	+	chr1_2:43413938-43413957	None:intergenic	45.0%
!	CAAACTCCTACTAGCCTCAT+TGG	+	chr1_2:43414172-43414191	None:intergenic	45.0%
	TCACCACAGATGTTCTAGTC+CGG	+	chr1_2:43414224-43414243	None:intergenic	45.0%
	ACTAGAACATCTGTGGTGAG+TGG	-	chr1_2:43414225-43414244	Msa0071470:CDS	45.0%
	GTTGATCTCCTCATTTCCAC+TGG	-	chr1_2:43414378-43414397	Msa0071470:CDS	45.0%
	TGTTTGCTCTTCCTTGTTGC+TGG	+	chr1_2:43415274-43415293	None:intergenic	45.0%
	GGAGCTTCACCAAGTGTTTA+TGG	-	chr1_2:43415361-43415380	Msa0071470:CDS	45.0%
	TCCAACAGTTGCATGTTGCT+AGG	-	chr1_2:43415474-43415493	Msa0071470:CDS	45.0%
	TCCTAGCAACATGCAACTGT+TGG	+	chr1_2:43415478-43415497	None:intergenic	45.0%
!	GGTGGCTATGACTAGTTCAA+AGG	-	chr1_2:43415638-43415657	Msa0071470:CDS	45.0%
	ATACCATGCCAGAGTTGTCA+AGG	+	chr1_2:43415697-43415716	None:intergenic	45.0%
	AGTTGACCATGACCATCATG+GGG	+	chr1_2:43415799-43415818	None:intergenic	45.0%
	GTAGTTGACCATGACCATCA+TGG	+	chr1_2:43415801-43415820	None:intergenic	45.0%
	ACATTTCGATCACATGGTGG+TGG	+	chr1_2:43413903-43413922	None:intergenic	45.0%
!!	GAGATGAACACTGGTTTGTG+CGG	+	chr1_2:43413938-43413957	None:intergenic	45.0%
!	CAAACTCCTACTAGCCTCAT+TGG	+	chr1_2:43414172-43414191	None:intergenic	45.0%
	TCACCACAGATGTTCTAGTC+CGG	+	chr1_2:43414224-43414243	None:intergenic	45.0%
	ACTAGAACATCTGTGGTGAG+TGG	-	chr1_2:43414225-43414244	Msa0071470:CDS	45.0%
	GTTGATCTCCTCATTTCCAC+TGG	-	chr1_2:43414378-43414397	Msa0071470:CDS	45.0%
	TGTTTGCTCTTCCTTGTTGC+TGG	+	chr1_2:43415274-43415293	None:intergenic	45.0%
	GGAGCTTCACCAAGTGTTTA+TGG	-	chr1_2:43415361-43415380	Msa0071470:CDS	45.0%
	TCCAACAGTTGCATGTTGCT+AGG	-	chr1_2:43415474-43415493	Msa0071470:CDS	45.0%
	TCCTAGCAACATGCAACTGT+TGG	+	chr1_2:43415478-43415497	None:intergenic	45.0%
!	GGTGGCTATGACTAGTTCAA+AGG	-	chr1_2:43415638-43415657	Msa0071470:CDS	45.0%
	ATACCATGCCAGAGTTGTCA+AGG	+	chr1_2:43415697-43415716	None:intergenic	45.0%
	AGTTGACCATGACCATCATG+GGG	+	chr1_2:43415799-43415818	None:intergenic	45.0%
	GTAGTTGACCATGACCATCA+TGG	+	chr1_2:43415801-43415820	None:intergenic	45.0%
!!	ATATTATAATATTATAATCT+TGG	-	chr1_2:43415617-43415636	Msa0071470:CDS	5.0%
!!!	ATAAATATTTTTTCATATAT+TGG	-	chr1_2:43415720-43415739	Msa0071470:CDS	5.0%
!!	ATATTATAATATTATAATCT+TGG	-	chr1_2:43415617-43415636	Msa0071470:CDS	5.0%
!!!	ATAAATATTTTTTCATATAT+TGG	-	chr1_2:43415720-43415739	Msa0071470:CDS	5.0%
	TTTCTCTCGGTTCCGCAACT+CGG	-	chr1_2:43413858-43413877	Msa0071470:three_prime_UTR	50.0%
	GCGAAACTTGATCCGAGTTG+CGG	+	chr1_2:43413873-43413892	None:intergenic	50.0%
	CAACTCGGATCAAGTTTCGC+CGG	-	chr1_2:43413873-43413892	Msa0071470:three_prime_UTR	50.0%
!!	ATCACATGGTGGTGGTTGTC+CGG	+	chr1_2:43413895-43413914	None:intergenic	50.0%
!!	ACACTGGTTTGTGCGGTGTT+CGG	+	chr1_2:43413931-43413950	None:intergenic	50.0%
	TCCTCTCATGGGAGACTCTA+AGG	+	chr1_2:43414029-43414048	None:intergenic	50.0%
	AAGGGTCTTGCTCCTCTCAT+GGG	+	chr1_2:43414040-43414059	None:intergenic	50.0%
	CTCCAAAATGGATGCTGACG+TGG	-	chr1_2:43414089-43414108	Msa0071470:three_prime_UTR	50.0%
!	AGCCACGTCAGCATCCATTT+TGG	+	chr1_2:43414094-43414113	None:intergenic	50.0%
!	ACTTGTTAAACTCCGGCTCG+AGG	-	chr1_2:43414134-43414153	Msa0071470:exon	50.0%
!	TCCTACTAGCCTCATTGGAC+CGG	+	chr1_2:43414167-43414186	None:intergenic	50.0%
	CATCTGTGGTGAGTGGTTTG+AGG	-	chr1_2:43414232-43414251	Msa0071470:CDS	50.0%
	TCATGCTGCCTTGACAACTC+TGG	-	chr1_2:43415686-43415705	Msa0071470:CDS	50.0%
	CTAGAACCCCATGATGGTCA+TGG	-	chr1_2:43415790-43415809	Msa0071470:CDS	50.0%
	GGTCATGGTCAACTACCTTG+AGG	-	chr1_2:43415805-43415824	Msa0071470:CDS	50.0%
	GGCATGTGAATTGGAGGAGA+AGG	-	chr1_2:43415858-43415877	Msa0071470:CDS	50.0%
	TTTCTCTCGGTTCCGCAACT+CGG	-	chr1_2:43413858-43413877	Msa0071470:three_prime_UTR	50.0%
	GCGAAACTTGATCCGAGTTG+CGG	+	chr1_2:43413873-43413892	None:intergenic	50.0%
	CAACTCGGATCAAGTTTCGC+CGG	-	chr1_2:43413873-43413892	Msa0071470:three_prime_UTR	50.0%
!!	ATCACATGGTGGTGGTTGTC+CGG	+	chr1_2:43413895-43413914	None:intergenic	50.0%
!!	ACACTGGTTTGTGCGGTGTT+CGG	+	chr1_2:43413931-43413950	None:intergenic	50.0%
	TCCTCTCATGGGAGACTCTA+AGG	+	chr1_2:43414029-43414048	None:intergenic	50.0%
	AAGGGTCTTGCTCCTCTCAT+GGG	+	chr1_2:43414040-43414059	None:intergenic	50.0%
	CTCCAAAATGGATGCTGACG+TGG	-	chr1_2:43414089-43414108	Msa0071470:three_prime_UTR	50.0%
!	AGCCACGTCAGCATCCATTT+TGG	+	chr1_2:43414094-43414113	None:intergenic	50.0%
!	ACTTGTTAAACTCCGGCTCG+AGG	-	chr1_2:43414134-43414153	Msa0071470:exon	50.0%
!	TCCTACTAGCCTCATTGGAC+CGG	+	chr1_2:43414167-43414186	None:intergenic	50.0%
	CATCTGTGGTGAGTGGTTTG+AGG	-	chr1_2:43414232-43414251	Msa0071470:CDS	50.0%
	TCATGCTGCCTTGACAACTC+TGG	-	chr1_2:43415686-43415705	Msa0071470:CDS	50.0%
	CTAGAACCCCATGATGGTCA+TGG	-	chr1_2:43415790-43415809	Msa0071470:CDS	50.0%
	GGTCATGGTCAACTACCTTG+AGG	-	chr1_2:43415805-43415824	Msa0071470:CDS	50.0%
	GGCATGTGAATTGGAGGAGA+AGG	-	chr1_2:43415858-43415877	Msa0071470:CDS	50.0%
	GCCTTAGAGTCTCCCATGAG+AGG	-	chr1_2:43414025-43414044	Msa0071470:three_prime_UTR	55.0%
	GAAGGGTCTTGCTCCTCTCA+TGG	+	chr1_2:43414041-43414060	None:intergenic	55.0%
	CACAGCTTTCGCGCTGTGAA+GGG	+	chr1_2:43414058-43414077	None:intergenic	55.0%
	TCACAGCTTTCGCGCTGTGA+AGG	+	chr1_2:43414059-43414078	None:intergenic	55.0%
	ACCGGTCCAATGAGGCTAGT+AGG	-	chr1_2:43414163-43414182	Msa0071470:CDS	55.0%
	GAGGCTAGTAGGAGTTTGCC+TGG	-	chr1_2:43414174-43414193	Msa0071470:CDS	55.0%
	AGTAGGAGTTTGCCTGGCAC+TGG	-	chr1_2:43414180-43414199	Msa0071470:CDS	55.0%
	AGATGTTCTAGTCCGGTCCG+AGG	+	chr1_2:43414217-43414236	None:intergenic	55.0%
!	GGACCGGACTAGAACATCTG+TGG	-	chr1_2:43414218-43414237	Msa0071470:CDS	55.0%
	ACGAATTAGCACGTGCCACG+TGG	+	chr1_2:43415439-43415458	None:intergenic	55.0%
	CTGCCTTGACAACTCTGGCA+TGG	-	chr1_2:43415691-43415710	Msa0071470:CDS	55.0%
	GCCTTAGAGTCTCCCATGAG+AGG	-	chr1_2:43414025-43414044	Msa0071470:three_prime_UTR	55.0%
	GAAGGGTCTTGCTCCTCTCA+TGG	+	chr1_2:43414041-43414060	None:intergenic	55.0%
	CACAGCTTTCGCGCTGTGAA+GGG	+	chr1_2:43414058-43414077	None:intergenic	55.0%
	TCACAGCTTTCGCGCTGTGA+AGG	+	chr1_2:43414059-43414078	None:intergenic	55.0%
	ACCGGTCCAATGAGGCTAGT+AGG	-	chr1_2:43414163-43414182	Msa0071470:CDS	55.0%
	GAGGCTAGTAGGAGTTTGCC+TGG	-	chr1_2:43414174-43414193	Msa0071470:CDS	55.0%
	AGTAGGAGTTTGCCTGGCAC+TGG	-	chr1_2:43414180-43414199	Msa0071470:CDS	55.0%
	AGATGTTCTAGTCCGGTCCG+AGG	+	chr1_2:43414217-43414236	None:intergenic	55.0%
!	GGACCGGACTAGAACATCTG+TGG	-	chr1_2:43414218-43414237	Msa0071470:CDS	55.0%
	ACGAATTAGCACGTGCCACG+TGG	+	chr1_2:43415439-43415458	None:intergenic	55.0%
	CTGCCTTGACAACTCTGGCA+TGG	-	chr1_2:43415691-43415710	Msa0071470:CDS	55.0%
	GGCACTTGACCGGTCCAATG+AGG	-	chr1_2:43414155-43414174	Msa0071470:CDS	60.0%
!	GAGTTTGCCTGGCACTGGAC+CGG	-	chr1_2:43414185-43414204	Msa0071470:CDS	60.0%
!	AGTTTGCCTGGCACTGGACC+GGG	-	chr1_2:43414186-43414205	Msa0071470:CDS	60.0%
	GGCACTTGACCGGTCCAATG+AGG	-	chr1_2:43414155-43414174	Msa0071470:CDS	60.0%
!	GAGTTTGCCTGGCACTGGAC+CGG	-	chr1_2:43414185-43414204	Msa0071470:CDS	60.0%
!	AGTTTGCCTGGCACTGGACC+GGG	-	chr1_2:43414186-43414205	Msa0071470:CDS	60.0%
!	TCCGGCTCGAGGCACTTGAC+CGG	-	chr1_2:43414145-43414164	Msa0071470:CDS	65.0%
	ACCGGTCAAGTGCCTCGAGC+CGG	+	chr1_2:43414149-43414168	None:intergenic	65.0%
	CACTGGACCGGGTTCGTCCT+CGG	-	chr1_2:43414197-43414216	Msa0071470:CDS	65.0%
!	TCCGGCTCGAGGCACTTGAC+CGG	-	chr1_2:43414145-43414164	Msa0071470:CDS	65.0%
	ACCGGTCAAGTGCCTCGAGC+CGG	+	chr1_2:43414149-43414168	None:intergenic	65.0%
	CACTGGACCGGGTTCGTCCT+CGG	-	chr1_2:43414197-43414216	Msa0071470:CDS	65.0%
	GACGAACCCGGTCCAGTGCC+AGG	+	chr1_2:43414195-43414214	None:intergenic	70.0%
	GACCGGGTTCGTCCTCGGAC+CGG	-	chr1_2:43414202-43414221	Msa0071470:CDS	70.0%
	GTCCGGTCCGAGGACGAACC+CGG	+	chr1_2:43414207-43414226	None:intergenic	70.0%
	GACGAACCCGGTCCAGTGCC+AGG	+	chr1_2:43414195-43414214	None:intergenic	70.0%
	GACCGGGTTCGTCCTCGGAC+CGG	-	chr1_2:43414202-43414221	Msa0071470:CDS	70.0%
	GTCCGGTCCGAGGACGAACC+CGG	+	chr1_2:43414207-43414226	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	43413673	43416057	43413673	ID=Msa0071470;Name=Msa0071470
chr1_2	mRNA	43413673	43416057	43413673	ID=Msa0071470-mRNA-1;Parent=Msa0071470;Name=Msa0071470-mRNA-1;_AED=0.26;_eAED=0.26;_QI=162\|1\|1\|1\|1\|1\|2\|462\|306
chr1_2	exon	43413673	43414490	43413673	ID=Msa0071470-mRNA-1:exon:13120;Parent=Msa0071470-mRNA-1
chr1_2	exon	43415331	43416057	43415331	ID=Msa0071470-mRNA-1:exon:13119;Parent=Msa0071470-mRNA-1
chr1_2	five_prime_UTR	43415896	43416057	43415896	ID=Msa0071470-mRNA-1:five_prime_utr;Parent=Msa0071470-mRNA-1
chr1_2	CDS	43415331	43415895	43415331	ID=Msa0071470-mRNA-1:cds;Parent=Msa0071470-mRNA-1
chr1_2	CDS	43414135	43414490	43414135	ID=Msa0071470-mRNA-1:cds;Parent=Msa0071470-mRNA-1
chr1_2	three_prime_UTR	43413673	43414134	43413673	ID=Msa0071470-mRNA-1:three_prime_utr;Parent=Msa0071470-mRNA-1

Gene Sequence

>Msa0071470

ATGAATGATTTATTCTCTGGCTCTTTCTCTCGGTTCCGCAACTCGGATCAAGTTTCGCCGGACAACCACCACCATGTGATCGAAATGTCATCACCGAACACCGCACAAACCAGTGTTCATCTCGACAAATTCTTCGAAGAAGTCGAAGGTGTTAAAGAGGAACTGAAGGAGCTAGATCGTCTTTACGAAAGCCTTAGAGTCTCCCATGAGAGGAGCAAGACCCTTCACAGCGCGAAAGCTGTGAAAGATATTCGCTCCAAAATGGATGCTGACGTGGCTTTAGCTCTTAAGAAAGCTAAACTTGTTAAACTCCGGCTCGAGGCACTTGACCGGTCCAATGAGGCTAGTAGGAGTTTGCCTGGCACTGGACCGGGTTCGTCCTCGGACCGGACTAGAACATCTGTGGTGAGTGGTTTGAGGAAGAAGCTTAAGGATTCCATGGATAGCTTTAACAACCTTAGACAACAAATATCCTCTGAATATAGAGAAACTGTACAACGTAGATACTATACTGTCACTGGAGAGAATCCTGATGACAAAACCGTTGATCTCCTCATTTCCACTGGTGAAAGTGAAACATTTTTACAAAAAGCAATCCAGCAACAAGGAAGAGCAAACATCATGGACACAATCCAAGAAATTCAAGAGAGGCATGACACAGTGAAAGAGATAGAGAGAAATCTCATGGAGCTTCACCAAGTGTTTATGGACATGTCTGTTTTGGTTCAATCACAAGGTGAACAATTGGATAATATTGAAAGCCACGTGGCACGTGCTAATTCGTATGTAAGAGGTGGGGTCCAACAGTTGCATGTTGCTAGGAAGCACCAAATGAATAGCAGAAAGTGGACTTGTATTGCCATCATAATTCTCCTCATTATTATCTTGATCATAGTTTTACCTATTGTCCTTAAAAAATAG

Protein sequence

>Msa0071470

MNDLFSGSFSRFRNSDQVSPDNHHHVIEMSSPNTAQTSVHLDKFFEEVEGVKEELKELDRLYESLRVSHERSKTLHSAKAVKDIRSKMDADVALALKKAKLVKLRLEALDRSNEASRSLPGTGPGSSSDRTRTSVVSGLRKKLKDSMDSFNNLRQQISSEYRETVQRRYYTVTGENPDDKTVDLLISTGESETFLQKAIQQQGRANIMDTIQEIQERHDTVKEIERNLMELHQVFMDMSVLVQSQGEQLDNIESHVARANSYVRGGVQQLHVARKHQMNSRKWTCIAIIILLIIILIIVLPIVLKK*