AlfalfaGEDB | Msa0202380

M. sativa cultivar zhongmu-4 / Msa0202380

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202380	XP_024631492.1	94.434	539	18	3	1	539	1	527	0.0	1025

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202380	sp\|Q9LTS4\|BH041_ARATH	35.521	518	237	17	44	531	14	464	3.68e-58	203

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202380	G7IIK8	93.506	539	18	3	1	539	1	522	0.0	1011

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TFs/TRs:

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Gene ID	Type	Classification
Msa0202380	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0026420	Msa0202380	0.836113	1.132103e-56	-8.615850e-47
Msa0030800	Msa0202380	0.803860	2.848802e-49	-8.615850e-47
Msa0046680	Msa0202380	0.804821	1.796649e-49	-8.615850e-47
Msa0051480	Msa0202380	0.831862	1.312113e-55	-8.615850e-47
Msa0051620	Msa0202380	0.822885	1.864588e-53	-8.615850e-47
Msa0051730	Msa0202380	0.825773	3.904536e-54	-8.615850e-47
Msa0071470	Msa0202380	0.823264	1.521095e-53	-8.615850e-47
Msa0104810	Msa0202380	0.824753	6.804937e-54	-8.615850e-47
Msa0107830	Msa0202380	0.804860	1.763844e-49	-8.615850e-47
Msa0129290	Msa0202380	0.800688	1.281451e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202380	MtrunA17_Chr2g0299471	94.336	459	14	3	81	539	6	452	0.0	865

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202380	AT5G56960.2	39.241	553	263	19	11	531	12	523	3.55e-86	276
Msa0202380	AT5G56960.1	35.521	518	237	17	44	531	14	464	3.74e-59	203

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Find 96 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATATACTTTGATAATA+TGG	0.249981	2_1:-24753362	None:intergenic
AACAAAGGAGAAATTGAGCT+TGG	0.495316	2_1:+24754260	Msa0202380:CDS
AATACAGACACAATTCTACC+AGG	0.662180	2_1:+24754032	Msa0202380:CDS
AATATGAGAGATGAGTATTC+AGG	0.359714	2_1:-24754716	None:intergenic
AATGAGAGATCGAAATCAAG+CGG	0.637236	2_1:+24755120	Msa0202380:CDS
AATTACCAAGTTCTTCTTTA+GGG	0.266258	2_1:+24753547	Msa0202380:CDS
AATTCAGTTCTGACGGCTAC+AGG	0.433952	2_1:-24753280	None:intergenic
AATTGAGGTGGAGAAGTTCC+AGG	0.500124	2_1:-24754752	None:intergenic
AATTGTGTTGGTGTGATTTG+AGG	0.500733	2_1:-24754866	None:intergenic
AATTGTTGCAGCTCTAAGTA+GGG	0.554645	2_1:-24753982	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGATTGTGCTTATACAACT+TGG	+	chr2_1:24753462-24753481	Msa0202380:intron	30.0%
CAATTACCAAGTTCTTCTTT+AGG	+	chr2_1:24753546-24753565	Msa0202380:CDS	30.0%
GAAAACAAAAGAGTTTCTGA+TGG	-	chr2_1:24753788-24753807	None:intergenic	30.0%
ATATTAAGGCTATGTTGCTA+AGG	+	chr2_1:24754097-24754116	Msa0202380:intron	30.0%
TTCGTTAAAAATTGGGGAAA+AGG	+	chr2_1:24754362-24754381	Msa0202380:intron	30.0%
TACCATTTGAACTGTACTTA+CGG	-	chr2_1:24754392-24754411	None:intergenic	30.0%
GAATAAAGTTCAAATTCCCT+TGG	-	chr2_1:24754486-24754505	None:intergenic	30.0%
ATTGAAGATGAAGATGATGA+AGG	-	chr2_1:24754665-24754684	None:intergenic	30.0%
AATATGAGAGATGAGTATTC+AGG	-	chr2_1:24754719-24754738	None:intergenic	30.0%
ATATTCAACATAAATCCACC+TGG	+	chr2_1:24754734-24754753	Msa0202380:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	24753259	24758067	24753259	ID=Msa0202380;Name=Msa0202380
chr2_1	mRNA	24753259	24758067	24753259	ID=Msa0202380-mRNA-1;Parent=Msa0202380;Name=Msa0202380-mRNA-1;_AED=0.02;_eAED=0.03;_QI=0\|0.14\|0\|1\|0.85\|0.75\|8\|0\|540
chr2_1	exon	24753259	24753374	24753259	ID=Msa0202380-mRNA-1:exon:9448;Parent=Msa0202380-mRNA-1
chr2_1	exon	24753503	24753628	24753503	ID=Msa0202380-mRNA-1:exon:9449;Parent=Msa0202380-mRNA-1
chr2_1	exon	24753948	24754057	24753948	ID=Msa0202380-mRNA-1:exon:9450;Parent=Msa0202380-mRNA-1
chr2_1	exon	24754119	24754156	24754119	ID=Msa0202380-mRNA-1:exon:9451;Parent=Msa0202380-mRNA-1
chr2_1	exon	24754239	24754301	24754239	ID=Msa0202380-mRNA-1:exon:9452;Parent=Msa0202380-mRNA-1
chr2_1	exon	24754584	24755252	24754584	ID=Msa0202380-mRNA-1:exon:9453;Parent=Msa0202380-mRNA-1
chr2_1	exon	24755722	24756132	24755722	ID=Msa0202380-mRNA-1:exon:9454;Parent=Msa0202380-mRNA-1
chr2_1	exon	24757978	24758067	24757978	ID=Msa0202380-mRNA-1:exon:9455;Parent=Msa0202380-mRNA-1
chr2_1	CDS	24753259	24753374	24753259	ID=Msa0202380-mRNA-1:cds;Parent=Msa0202380-mRNA-1
chr2_1	CDS	24753503	24753628	24753503	ID=Msa0202380-mRNA-1:cds;Parent=Msa0202380-mRNA-1
chr2_1	CDS	24753948	24754057	24753948	ID=Msa0202380-mRNA-1:cds;Parent=Msa0202380-mRNA-1
chr2_1	CDS	24754119	24754156	24754119	ID=Msa0202380-mRNA-1:cds;Parent=Msa0202380-mRNA-1
chr2_1	CDS	24754239	24754301	24754239	ID=Msa0202380-mRNA-1:cds;Parent=Msa0202380-mRNA-1
chr2_1	CDS	24754584	24755252	24754584	ID=Msa0202380-mRNA-1:cds;Parent=Msa0202380-mRNA-1
chr2_1	CDS	24755722	24756132	24755722	ID=Msa0202380-mRNA-1:cds;Parent=Msa0202380-mRNA-1
chr2_1	CDS	24757978	24758067	24757978	ID=Msa0202380-mRNA-1:cds;Parent=Msa0202380-mRNA-1

Gene Sequence

>Msa0202380

ATGGAAGGTGTCTTTTCCCTTCCTGTAGCCGTCAGAACTGAATTTATCCGTTCTCTAATGCAATCTCTTGGATGCTCTCACATTTGTCTTTGGTCATATGATACCATATTATCAAATCGTTTGTCCTTCTTGGATGGTTTCTACAATGTGATAAACGATCAATTACCAAGTTCTTCTTTAGGGAGTGTAGCACAACAGCTTTTTAATCAATACAGGATTTTATCATTTGATGTCAATGATGACCGTGTTCCTGGACTAGCTTTTAGGAATCAACGTCCCTACTTAGAGCTGCAACAATTGGAACTTCTTACACTGTCATCAACAGAAATACAGACACAATTCTACCAGGTTAGTAGCATGTTTTTGTTTTTACAGGAAGCAAGGATCAAGACTGTTGTTTTCATGGGGTGCAACAAAGGAGAAATTGAGCTTGGTTTCTTAAATATGTCTCAAGCGGATATTCAAACGGCACTTAGCAGTCTATTTCCTGAAGATTTTTCAAGACAGACACAACAAATTAATCAAAATCCACCTTCATCATCTTCATCTTCAATGAGATCACTATCAACAGCAGGTAGTCCTACTCCTGAATACTCATCTCTCATATTCAACATAAATCCACCTGGAACTTCTCCACCTCAATTTTCACCTGATCCTAACCAACTTGGAGGAGTAAATATTCCACCAATGAGGCCTGTTTCAAACACATTACTACCTCTTCAACTTCAACAATTGCCTCAAATCACACCAACACAATTATTCCCTACAACACAAATTGAGAATGATGTAATAATGAGAGCAATCCAAAATGTTCTATCTACACCCCCTTCTCATCAACATCAACCTCAGCAAAATTATGTGGCACATCCAGAAGCTAGTGCATTTGGAAGGTATAGACATGATAAAAGTCCTAATATAGGGTCAAATTTTAGAAGACAAAGTTTGATGAAGAGATCATTTGCATTCTTTAGAAGCTTGAATTTGATGAGAATGAGAGATCGAAATCAAGCGGCGCGCCCCTCGAGTAATCAACTTCATCATATGATATCAGAGCGACGAAGACGAGAGAAGCTTAATGAGAATTTTCAAGCACTTAGAGCATTACTTCCTCAAGGAACAAAGAAAGACAAAGCTTCCATACTGATAACAGCTAAGGAGACATTGAGATCTTTGATGGCTGAAATTGACAAACTAAGCAAAAGAAATCAAGAATTGATGTCACAACAATTGGCAGCAGCAAATAAAGAATCTACAACAACTGAAGAAATTATCAAATTCTCATCAAATGAAAGATTAACCGTTCGAGTTTTGCATGTAACGGGGTCGAGTTCATCAGAAGATGAATCAATGGTAGTGGACTTGCAAGTGAACGTGATGGGACAAATTTCTCAAGTTGATGTATTGATTCGATTATTGGAATTCTTAAATCATGATCAACATGTCAACTTGGTTTCAATGGATGCAACAAATACAAATCATGCACCAGGGAATGATTTACTTCATCAAATAACCTTCAGGCTAAGGATTACTCAGATAAGTGAATGGGACGAGGAAGCCTTCCAGGAAGCAGTGAGAAGAGTGGTTGCTGACTTGATACAGTCCCATGTGGACCAAAATATATGA

Protein sequence

>Msa0202380

MEGVFSLPVAVRTEFIRSLMQSLGCSHICLWSYDTILSNRLSFLDGFYNVINDQLPSSSLGSVAQQLFNQYRILSFDVNDDRVPGLAFRNQRPYLELQQLELLTLSSTEIQTQFYQVSSMFLFLQEARIKTVVFMGCNKGEIELGFLNMSQADIQTALSSLFPEDFSRQTQQINQNPPSSSSSSMRSLSTAGSPTPEYSSLIFNINPPGTSPPQFSPDPNQLGGVNIPPMRPVSNTLLPLQLQQLPQITPTQLFPTTQIENDVIMRAIQNVLSTPPSHQHQPQQNYVAHPEASAFGRYRHDKSPNIGSNFRRQSLMKRSFAFFRSLNLMRMRDRNQAARPSSNQLHHMISERRRREKLNENFQALRALLPQGTKKDKASILITAKETLRSLMAEIDKLSKRNQELMSQQLAAANKESTTTEEIIKFSSNERLTVRVLHVTGSSSSEDESMVVDLQVNVMGQISQVDVLIRLLEFLNHDQHVNLVSMDATNTNHAPGNDLLHQITFRLRITQISEWDEEAFQEAVRRVVADLIQSHVDQNI*