AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0202380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0202380 MtrunA17_Chr2g0299471 94.336 459 14 3 81 539 6 452 0.0 865
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0202380 AT5G56960.2 39.241 553 263 19 11 531 12 523 3.55e-86 276
Msa0202380 AT5G56960.1 35.521 518 237 17 44 531 14 464 3.74e-59 203

Find 96 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATGTATTGATTCGATTAT+TGG 0.081677 2_1:+24755994 Msa0202380:CDS
CTAAAATTTGACCCTATATT+AGG 0.183433 2_1:-24755040 None:intergenic
ATCACGTGAGTCATATATTT+TGG 0.219439 2_1:-24758055 None:intergenic
GATGCTCTCACATTTGTCTT+TGG 0.245611 2_1:+24753329 Msa0202380:CDS
GAATAGTCGTTTGTCCTTCT+TGG 0.247039 2_1:+24753497 Msa0202380:intron
AAATATATACTTTGATAATA+TGG 0.249981 2_1:-24753362 None:intergenic
CAATTACCAAGTTCTTCTTT+AGG 0.263208 2_1:+24753546 Msa0202380:CDS
AATTACCAAGTTCTTCTTTA+GGG 0.266258 2_1:+24753547 Msa0202380:CDS
CCACTCTTCTCACTGCTTCC+TGG 0.304864 2_1:-24758004 None:intergenic
TCATTCTCAATTTGTGTTGT+AGG 0.322222 2_1:-24754893 None:intergenic
CTTCCAAATGCACTAGCTTC+TGG 0.330949 2_1:-24754998 None:intergenic
TACTTCATCAAATAACCTTC+AGG 0.345353 2_1:+24756095 Msa0202380:CDS
CATGATAAAAGTCCTAATAT+AGG 0.347025 2_1:+24755028 Msa0202380:CDS
CTCCTTAGCTGTTATCAGTA+TGG 0.357487 2_1:-24755735 None:intergenic
AATATGAGAGATGAGTATTC+AGG 0.359714 2_1:-24754716 None:intergenic
CATCCAGAAGCTAGTGCATT+TGG 0.365951 2_1:+24754995 Msa0202380:CDS
ATGGGACGAGGAAGCCTTCC+AGG 0.369330 2_1:+24757986 Msa0202380:CDS
GGTAGTAATGTGTTTGAAAC+AGG 0.374921 2_1:-24754824 None:intergenic
ATGATAAAAGTCCTAATATA+GGG 0.380695 2_1:+24755029 Msa0202380:CDS
GGAGACATTGAGATCTTTGA+TGG 0.383429 2_1:+24755754 Msa0202380:CDS
AGAATTGATGTCACAACAAT+TGG 0.385231 2_1:+24755808 Msa0202380:CDS
CATTCTCAATTTGTGTTGTA+GGG 0.390206 2_1:-24754892 None:intergenic
TTTACTCCTCCAAGTTGGTT+AGG 0.398273 2_1:-24754785 None:intergenic
ACATGTCAACTTGGTTTCAA+TGG 0.402871 2_1:+24756036 Msa0202380:CDS
CTACTTAGAGCTGCAACAAT+TGG 0.411814 2_1:+24753984 Msa0202380:CDS
ATCAAATAACCTTCAGGCTA+AGG 0.429025 2_1:+24756101 Msa0202380:CDS
AATTCAGTTCTGACGGCTAC+AGG 0.433952 2_1:-24753280 None:intergenic
CAATTGTTGCAGCTCTAAGT+AGG 0.455858 2_1:-24753983 None:intergenic
GGGGTGTAGATAGAACATTT+TGG 0.464905 2_1:-24754934 None:intergenic
CGTTCTCTAATGCAATCTCT+TGG 0.486499 2_1:+24753307 Msa0202380:CDS
CCTCCAAGTTGGTTAGGATC+AGG 0.487097 2_1:-24754779 None:intergenic
AGTCGTTTGTCCTTCTTGGA+TGG 0.492248 2_1:+24753501 Msa0202380:intron
AACAAAGGAGAAATTGAGCT+TGG 0.495316 2_1:+24754260 Msa0202380:CDS
GTGTTTGAAACAGGCCTCAT+TGG 0.497033 2_1:-24754815 None:intergenic
AATTGAGGTGGAGAAGTTCC+AGG 0.500124 2_1:-24754752 None:intergenic
AATTGTGTTGGTGTGATTTG+AGG 0.500733 2_1:-24754866 None:intergenic
TCTTCTCACTGCTTCCTGGA+AGG 0.503286 2_1:-24758000 None:intergenic
GTTGTAGGGAATAATTGTGT+TGG 0.512655 2_1:-24754878 None:intergenic
TTTACAGGAAGCAAGGATCA+AGG 0.513199 2_1:+24754135 Msa0202380:CDS
AGAGATGAGTATTCAGGAGT+AGG 0.522961 2_1:-24754710 None:intergenic
AGAAGATGAATCAATGGTAG+TGG 0.525040 2_1:+24755934 Msa0202380:CDS
TGCGCAGGCGGATATTCAAA+CGG 0.526338 2_1:+24754577 Msa0202380:intron
TTCATCAGAAGATGAATCAA+TGG 0.532346 2_1:+24755928 Msa0202380:CDS
CTGAGTAATCCTTAGCCTGA+AGG 0.534544 2_1:-24756110 None:intergenic
TCACCTGATCCTAACCAACT+TGG 0.535317 2_1:+24754776 Msa0202380:CDS
TCATGATCAACATGTCAACT+TGG 0.538074 2_1:+24756027 Msa0202380:CDS
GGCAATTGTTGAAGTTGAAG+AGG 0.545458 2_1:-24754845 None:intergenic
TGATGAAGTAAATCATTCCC+TGG 0.552419 2_1:-24756082 None:intergenic
AATTGTTGCAGCTCTAAGTA+GGG 0.554645 2_1:-24753982 None:intergenic
GAATATTTACTCCTCCAAGT+TGG 0.557510 2_1:-24754790 None:intergenic
CCTGATCCTAACCAACTTGG+AGG 0.557669 2_1:+24754779 Msa0202380:CDS
GTTTATGCAGATAAGTGAAT+GGG 0.559981 2_1:+24757968 Msa0202380:intron
TTTGAAACAGGCCTCATTGG+TGG 0.560996 2_1:-24754812 None:intergenic
TTAGGATCAGGTGAAAATTG+AGG 0.561439 2_1:-24754767 None:intergenic
TTCCATACTGATAACAGCTA+AGG 0.563069 2_1:+24755733 Msa0202380:CDS
GAGGTTGATGTTGATGAGAA+GGG 0.565051 2_1:-24754955 None:intergenic
TGAGGTTGATGTTGATGAGA+AGG 0.576774 2_1:-24754956 None:intergenic
ACACTCCCTAAAGAAGAACT+TGG 0.577549 2_1:-24753552 None:intergenic
ACAAATACAAATCATGCACC+AGG 0.579495 2_1:+24756064 Msa0202380:CDS
ATGAGATCACTATCAACAGC+AGG 0.579733 2_1:+24754683 Msa0202380:CDS
CTTAGAGCATTACTTCCTCA+AGG 0.580881 2_1:+24755223 Msa0202380:CDS
GGTTTATGCAGATAAGTGAA+TGG 0.584114 2_1:+24757967 Msa0202380:intron
CAGTTCTGACGGCTACAGGA+AGG 0.586512 2_1:-24753276 None:intergenic
CTTCAGGCTAAGGATTACTC+AGG 0.589180 2_1:+24756111 Msa0202380:CDS
ATGATGAAGTTGATTACTCG+AGG 0.589833 2_1:-24755149 None:intergenic
GGATCAGGTGAAAATTGAGG+TGG 0.596720 2_1:-24754764 None:intergenic
GACTTGCAAGTGAACGTGAT+GGG 0.599132 2_1:+24755956 Msa0202380:CDS
CAAGAGATTGCATTAGAGAA+CGG 0.600137 2_1:-24753306 None:intergenic
GTACGTACCTTTGTTCCTTG+AGG 0.603059 2_1:-24755238 None:intergenic
AGTTCTGACGGCTACAGGAA+GGG 0.603804 2_1:-24753275 None:intergenic
AGGTTGATGTTGATGAGAAG+GGG 0.605846 2_1:-24754954 None:intergenic
ACGGATAAATTCAGTTCTGA+CGG 0.607682 2_1:-24753287 None:intergenic
ATTGTAGAAACCATCCAAGA+AGG 0.610273 2_1:-24753511 None:intergenic
ATTGAAGATGAAGATGATGA+AGG 0.610501 2_1:-24754662 None:intergenic
TCAACCTCAGCAAAATTATG+TGG 0.614391 2_1:+24754970 Msa0202380:CDS
TGATTCCTAAAAGCTAGTCC+AGG 0.617478 2_1:-24753955 None:intergenic
CCTATAACCACATATATGGA+AGG 0.620515 2_1:+24753244 None:intergenic
TGATGAAGTTGATTACTCGA+GGG 0.623889 2_1:-24755148 None:intergenic
ATTACTTCCTCAAGGAACAA+AGG 0.632442 2_1:+24755231 Msa0202380:CDS
TAGGACAACAAGTACTAACC+TGG 0.632955 2_1:-24754050 None:intergenic
CAGAAGCTAGTGCATTTGGA+AGG 0.633413 2_1:+24754999 Msa0202380:CDS
GCAGATAAGTGAATGGGACG+AGG 0.636589 2_1:+24757974 Msa0202380:intron
AATGAGAGATCGAAATCAAG+CGG 0.637236 2_1:+24755120 Msa0202380:CDS
TAAAAGCTAGTCCAGGAACA+CGG 0.640221 2_1:-24753948 None:intergenic
ATATTCAACATAAATCCACC+TGG 0.642233 2_1:+24754734 Msa0202380:CDS
GATGAAGTTGATTACTCGAG+GGG 0.643129 2_1:-24755147 None:intergenic
CCAGGAAGCAGTGAGAAGAG+TGG 0.648622 2_1:+24758004 Msa0202380:CDS
GGTTGATGTTGATGAGAAGG+GGG 0.653653 2_1:-24754953 None:intergenic
GAAGATGAAGATGATGAAGG+TGG 0.654902 2_1:-24754659 None:intergenic
CGTTACATGCAAAACTCGAA+CGG 0.655300 2_1:-24755897 None:intergenic
AATACAGACACAATTCTACC+AGG 0.662180 2_1:+24754032 Msa0202380:CDS
GAGTAAATATTCCACCAATG+AGG 0.688300 2_1:+24754801 Msa0202380:CDS
TGAGGTGGAGAAGTTCCAGG+TGG 0.714377 2_1:-24754749 None:intergenic
GGACTTGCAAGTGAACGTGA+TGG 0.716456 2_1:+24755955 Msa0202380:CDS
CAAATACAAATCATGCACCA+GGG 0.722090 2_1:+24756065 Msa0202380:CDS
TGACTTGATACAGTCCCATG+TGG 0.800087 2_1:+24758031 Msa0202380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTAAATTTTAATATTTA+TGG + chr2_1:24756366-24756385 Msa0202380:intron 0.0%
!!! AAATATATACTTTGATAATA+TGG - chr2_1:24753365-24753384 None:intergenic 10.0%
!!! AAAGTTTTTTGTAATTAAAT+TGG + chr2_1:24753648-24753667 Msa0202380:intron 10.0%
!!! TATTTTTTTATTTACAACAT+TGG - chr2_1:24755494-24755513 None:intergenic 10.0%
!! AAATAAAAAAATAAAATACG+CGG + chr2_1:24755501-24755520 Msa0202380:intron 10.0%
!!! AAAATTTAATTTATACATGA+AGG - chr2_1:24756358-24756377 None:intergenic 10.0%
!!! ATTTTCAAATTTTTCAAAAA+TGG + chr2_1:24756860-24756879 Msa0202380:intron 10.0%
!!! ACTTTTAATAATAGAATTTA+TGG - chr2_1:24757236-24757255 None:intergenic 10.0%
!!! AGTTTAGAATATAATAATGT+AGG - chr2_1:24753408-24753427 None:intergenic 15.0%
!!! ATTCTTTTTTTTTTTTTTGC+CGG + chr2_1:24753696-24753715 Msa0202380:intron 15.0%
!! TTAGAAAAAGACATTTATTA+AGG - chr2_1:24753817-24753836 None:intergenic 15.0%
!! AATATTGTTTCGTTAAAAAT+TGG + chr2_1:24754354-24754373 Msa0202380:intron 15.0%
!! ATATTGTTTCGTTAAAAATT+GGG + chr2_1:24754355-24754374 Msa0202380:intron 15.0%
!! ATTAATTCGTGAAATAATTA+AGG + chr2_1:24756171-24756190 Msa0202380:intron 15.0%
!! TTAATTCGTGAAATAATTAA+GGG + chr2_1:24756172-24756191 Msa0202380:intron 15.0%
!!! ATTGGTTTATGTATAAAAAT+TGG - chr2_1:24757755-24757774 None:intergenic 15.0%
!! TAGAATATAATAATGTAGGT+AGG - chr2_1:24753404-24753423 None:intergenic 20.0%
!!! TACAACTTGGTTTTTTTTTT+TGG + chr2_1:24753475-24753494 Msa0202380:intron 20.0%
!!! AGTATAGCAATAATTTTCTT+AGG - chr2_1:24754072-24754091 None:intergenic 20.0%
!! TGCTATACTTGTATATATTA+AGG + chr2_1:24754083-24754102 Msa0202380:intron 20.0%
!! ACATATAATGTAAATGTTGT+CGG + chr2_1:24754329-24754348 Msa0202380:intron 20.0%
!! TATTGTTTCGTTAAAAATTG+GGG + chr2_1:24754356-24754375 Msa0202380:intron 20.0%
!! ATGATAAAAGTCCTAATATA+GGG + chr2_1:24755029-24755048 Msa0202380:CDS 20.0%
!! TGATTATAAAACAACATGAT+GGG - chr2_1:24755276-24755295 None:intergenic 20.0%
!! TTGATTATAAAACAACATGA+TGG - chr2_1:24755277-24755296 None:intergenic 20.0%
!! TAATCTATACTCTACAAAAT+AGG - chr2_1:24755543-24755562 None:intergenic 20.0%
!!! ATCTAGAATAATGATATGAT+CGG - chr2_1:24756685-24756704 None:intergenic 20.0%
!!! AACAGTTGTTTAAATTTTGA+CGG - chr2_1:24756764-24756783 None:intergenic 20.0%
!!! TTCAAATTTTTCAAAAATGG+TGG + chr2_1:24756863-24756882 Msa0202380:intron 20.0%
!!! ATTTTCATCGACATAATAAT+GGG - chr2_1:24757006-24757025 None:intergenic 20.0%
!!! AATTTTCATCGACATAATAA+TGG - chr2_1:24757007-24757026 None:intergenic 20.0%
!! AGTATACAACTTCAAATATA+TGG + chr2_1:24757036-24757055 Msa0202380:intron 20.0%
!! ACTTCAAATATATGGTTAAA+AGG + chr2_1:24757044-24757063 Msa0202380:intron 20.0%
!!! TGATAAAGTGAATTCTATTT+TGG + chr2_1:24757173-24757192 Msa0202380:intron 20.0%
!!! TGGATTATTTGTTATATAGT+AGG - chr2_1:24757443-24757462 None:intergenic 20.0%
!! TTTCTCGAAAACAATATATA+TGG - chr2_1:24757463-24757482 None:intergenic 20.0%
!!! AAGCATATCTCATTTTTTTA+AGG + chr2_1:24757614-24757633 Msa0202380:intron 20.0%
!!! ATTTTGTGGTATGTATTATA+AGG - chr2_1:24757884-24757903 None:intergenic 20.0%
!!! AAAGATGGAAACTAATTTTA+TGG + chr2_1:24757922-24757941 Msa0202380:intron 20.0%
! ATATAATAATGTAGGTAGGT+AGG - chr2_1:24753400-24753419 None:intergenic 25.0%
! AATTACCAAGTTCTTCTTTA+GGG + chr2_1:24753547-24753566 Msa0202380:CDS 25.0%
!! AACAGCTTTTTAATCAATAC+AGG + chr2_1:24753580-24753599 Msa0202380:CDS 25.0%
!!! TAGCATGTTTTTGTTTTTAC+AGG + chr2_1:24754120-24754139 Msa0202380:CDS 25.0%
!! ATAGAGAATTTTCAGTTTCT+TGG - chr2_1:24754173-24754192 None:intergenic 25.0%
! AATTTGAACTTTATTCTCTG+AGG + chr2_1:24754490-24754509 Msa0202380:intron 25.0%
!! TTGATTTAACCACATTTTTC+CGG + chr2_1:24754553-24754572 Msa0202380:intron 25.0%
! CATGATAAAAGTCCTAATAT+AGG + chr2_1:24755028-24755047 Msa0202380:CDS 25.0%
! CTAAAATTTGACCCTATATT+AGG - chr2_1:24755043-24755062 None:intergenic 25.0%
! ATGCATAATTATGTACCATA+AGG + chr2_1:24755296-24755315 Msa0202380:intron 25.0%
! TTCAAAAACATTGTTCCTTA+TGG - chr2_1:24755314-24755333 None:intergenic 25.0%
! AGAGACATTAAAAATCTTGA+CGG - chr2_1:24755357-24755376 None:intergenic 25.0%
! AATCGTTTGCAAGAAAAAAT+TGG - chr2_1:24755400-24755419 None:intergenic 25.0%
!!! CTAACATTCATGTTTTTTGT+CGG - chr2_1:24755633-24755652 None:intergenic 25.0%
!!! TGATGTATTGATTCGATTAT+TGG + chr2_1:24755994-24756013 Msa0202380:CDS 25.0%
!!! GTCTCTAAACTTTTAGTTAA+AGG + chr2_1:24756719-24756738 Msa0202380:intron 25.0%
!! AAAGTATTTATGGTTTATCG+TGG - chr2_1:24756801-24756820 None:intergenic 25.0%
!!! ATTGCCTTATTTACATAAGT+CGG + chr2_1:24756833-24756852 Msa0202380:intron 25.0%
!!! ATTACCGACTTATGTAAATA+AGG - chr2_1:24756840-24756859 None:intergenic 25.0%
!! AATTGATAACTCAGACAATT+AGG + chr2_1:24756931-24756950 Msa0202380:intron 25.0%
!!! CAATTAGGTTTTGAAAATAG+TGG + chr2_1:24756946-24756965 Msa0202380:intron 25.0%
!! TTTTCATCGACATAATAATG+GGG - chr2_1:24757005-24757024 None:intergenic 25.0%
! CAAATATATGGTTAAAAGGA+AGG + chr2_1:24757048-24757067 Msa0202380:intron 25.0%
!! TATATGACTTGTGTAATCTT+TGG - chr2_1:24757147-24757166 None:intergenic 25.0%
!!! CATTTTTGAAAGAGTTCAAT+TGG - chr2_1:24757773-24757792 None:intergenic 25.0%
TTGATTGTGCTTATACAACT+TGG + chr2_1:24753462-24753481 Msa0202380:intron 30.0%
CAATTACCAAGTTCTTCTTT+AGG + chr2_1:24753546-24753565 Msa0202380:CDS 30.0%
GAAAACAAAAGAGTTTCTGA+TGG - chr2_1:24753788-24753807 None:intergenic 30.0%
ATATTAAGGCTATGTTGCTA+AGG + chr2_1:24754097-24754116 Msa0202380:intron 30.0%
!!! TTTTGTTTTTACAGGAAGCA+AGG + chr2_1:24754128-24754147 Msa0202380:CDS 30.0%
!!! TTTTCAGACTGTTGTTTTCA+TGG + chr2_1:24754232-24754251 Msa0202380:intron 30.0%
!!! TTTCAGACTGTTGTTTTCAT+GGG + chr2_1:24754233-24754252 Msa0202380:intron 30.0%
TTCGTTAAAAATTGGGGAAA+AGG + chr2_1:24754362-24754381 Msa0202380:intron 30.0%
TACCATTTGAACTGTACTTA+CGG - chr2_1:24754392-24754411 None:intergenic 30.0%
! ATAGTCTTTTTACAACTCCA+AGG + chr2_1:24754466-24754485 Msa0202380:intron 30.0%
! TAGTCTTTTTACAACTCCAA+GGG + chr2_1:24754467-24754486 Msa0202380:intron 30.0%
GAATAAAGTTCAAATTCCCT+TGG - chr2_1:24754486-24754505 None:intergenic 30.0%
ATTGAAGATGAAGATGATGA+AGG - chr2_1:24754665-24754684 None:intergenic 30.0%
AATATGAGAGATGAGTATTC+AGG - chr2_1:24754719-24754738 None:intergenic 30.0%
ATATTCAACATAAATCCACC+TGG + chr2_1:24754734-24754753 Msa0202380:CDS 30.0%
CATTCTCAATTTGTGTTGTA+GGG - chr2_1:24754895-24754914 None:intergenic 30.0%
TCATTCTCAATTTGTGTTGT+AGG - chr2_1:24754896-24754915 None:intergenic 30.0%
TCTATACTCTACAAAATAGG+TGG - chr2_1:24755540-24755559 None:intergenic 30.0%
AGAATTGATGTCACAACAAT+TGG + chr2_1:24755808-24755827 Msa0202380:CDS 30.0%
TTCATCAGAAGATGAATCAA+TGG + chr2_1:24755928-24755947 Msa0202380:CDS 30.0%
TACTTCATCAAATAACCTTC+AGG + chr2_1:24756095-24756114 Msa0202380:CDS 30.0%
!! TTTTTGGTAAGCAAAATGCT+AGG + chr2_1:24756470-24756489 Msa0202380:intron 30.0%
TGTAAATAAGGCAATTGCTA+GGG - chr2_1:24756828-24756847 None:intergenic 30.0%
ATGTAAATAAGGCAATTGCT+AGG - chr2_1:24756829-24756848 None:intergenic 30.0%
!!! TTAGGTTTTGAAAATAGTGG+CGG + chr2_1:24756949-24756968 Msa0202380:intron 30.0%
! GTGCTTGAAATATACTGATT+AGG + chr2_1:24757093-24757112 Msa0202380:intron 30.0%
! AATATACTGATTAGGTCGAT+TGG + chr2_1:24757101-24757120 Msa0202380:intron 30.0%
!!! TATCTATGCTGACTTGTTTT+CGG - chr2_1:24757205-24757224 None:intergenic 30.0%
AAGAAAGAGTAGTAAACTTG+TGG + chr2_1:24757269-24757288 Msa0202380:intron 30.0%
TAGTCTGTCAAATGTCAATT+TGG + chr2_1:24757384-24757403 Msa0202380:intron 30.0%
TTGTTATATAGTAGGTCGTT+TGG - chr2_1:24757435-24757454 None:intergenic 30.0%
! TTGATCAATGATGATGACAA+AGG - chr2_1:24757836-24757855 None:intergenic 30.0%
CATACCACAAAATCTTCATT+AGG + chr2_1:24757891-24757910 Msa0202380:intron 30.0%
! GGAAGAATATTAACCAGTTT+TGG + chr2_1:24757943-24757962 Msa0202380:intron 30.0%
!! AGAATATTAACCAGTTTTGG+TGG + chr2_1:24757946-24757965 Msa0202380:intron 30.0%
GTTTATGCAGATAAGTGAAT+GGG + chr2_1:24757968-24757987 Msa0202380:intron 30.0%
!!! TCATATATTTTGGTCCACAT+GGG - chr2_1:24758048-24758067 None:intergenic 30.0%
! ACGGATAAATTCAGTTCTGA+CGG - chr2_1:24753290-24753309 None:intergenic 35.0%
CAAGAGATTGCATTAGAGAA+CGG - chr2_1:24753309-24753328 None:intergenic 35.0%
AGCACAATCAACAACTACTA+TGG - chr2_1:24753453-24753472 None:intergenic 35.0%
ATTGTAGAAACCATCCAAGA+AGG - chr2_1:24753514-24753533 None:intergenic 35.0%
GTAAAGATCTCACGATCTAA+CGG - chr2_1:24753875-24753894 None:intergenic 35.0%
!! AATTGTTGCAGCTCTAAGTA+GGG - chr2_1:24753985-24754004 None:intergenic 35.0%
AATACAGACACAATTCTACC+AGG + chr2_1:24754032-24754051 Msa0202380:CDS 35.0%
!!! TTCAGACTGTTGTTTTCATG+GGG + chr2_1:24754234-24754253 Msa0202380:intron 35.0%
AACAAAGGAGAAATTGAGCT+TGG + chr2_1:24754260-24754279 Msa0202380:CDS 35.0%
ACCATTTGAACTGTACTTAC+GGG - chr2_1:24754391-24754410 None:intergenic 35.0%
CAGTTCAAATGGTAAAAGAC+TGG + chr2_1:24754398-24754417 Msa0202380:intron 35.0%
CTATTAGAAGCGAGAATCAT+GGG - chr2_1:24754450-24754469 None:intergenic 35.0%
ACTATTAGAAGCGAGAATCA+TGG - chr2_1:24754451-24754470 None:intergenic 35.0%
GTCTGTCTTGAAAAATCTTC+AGG - chr2_1:24754620-24754639 None:intergenic 35.0%
TTAGGATCAGGTGAAAATTG+AGG - chr2_1:24754770-24754789 None:intergenic 35.0%
GAATATTTACTCCTCCAAGT+TGG - chr2_1:24754793-24754812 None:intergenic 35.0%
GAGTAAATATTCCACCAATG+AGG + chr2_1:24754801-24754820 Msa0202380:CDS 35.0%
! GGTAGTAATGTGTTTGAAAC+AGG - chr2_1:24754827-24754846 None:intergenic 35.0%
! AATTGTGTTGGTGTGATTTG+AGG - chr2_1:24754869-24754888 None:intergenic 35.0%
GTTGTAGGGAATAATTGTGT+TGG - chr2_1:24754881-24754900 None:intergenic 35.0%
TCAACCTCAGCAAAATTATG+TGG + chr2_1:24754970-24754989 Msa0202380:CDS 35.0%
AATGAGAGATCGAAATCAAG+CGG + chr2_1:24755120-24755139 Msa0202380:CDS 35.0%
! TGATGAAGTTGATTACTCGA+GGG - chr2_1:24755151-24755170 None:intergenic 35.0%
! ATGATGAAGTTGATTACTCG+AGG - chr2_1:24755152-24755171 None:intergenic 35.0%
ATTACTTCCTCAAGGAACAA+AGG + chr2_1:24755231-24755250 Msa0202380:CDS 35.0%
AAACATTATGTTGATCCGAG+TGG + chr2_1:24755432-24755451 Msa0202380:intron 35.0%
TTCCATACTGATAACAGCTA+AGG + chr2_1:24755733-24755752 Msa0202380:CDS 35.0%
AGAAGATGAATCAATGGTAG+TGG + chr2_1:24755934-24755953 Msa0202380:CDS 35.0%
TCATGATCAACATGTCAACT+TGG + chr2_1:24756027-24756046 Msa0202380:CDS 35.0%
ACATGTCAACTTGGTTTCAA+TGG + chr2_1:24756036-24756055 Msa0202380:CDS 35.0%
ACAAATACAAATCATGCACC+AGG + chr2_1:24756064-24756083 Msa0202380:CDS 35.0%
CAAATACAAATCATGCACCA+GGG + chr2_1:24756065-24756084 Msa0202380:CDS 35.0%
TGATGAAGTAAATCATTCCC+TGG - chr2_1:24756085-24756104 None:intergenic 35.0%
ATCAAATAACCTTCAGGCTA+AGG + chr2_1:24756101-24756120 Msa0202380:CDS 35.0%
!!! AACGGTTTTTAGAATGACAC+TGG - chr2_1:24756514-24756533 None:intergenic 35.0%
!!! GTCGTTGTTAGAGTTTTGAA+CGG - chr2_1:24756532-24756551 None:intergenic 35.0%
! TGACTTGTGTAATCTTTGGA+TGG - chr2_1:24757143-24757162 None:intergenic 35.0%
CTACTCTTTCTTAACGATTG+AGG - chr2_1:24757261-24757280 None:intergenic 35.0%
TTATATAGTAGGTCGTTTGG+TGG - chr2_1:24757432-24757451 None:intergenic 35.0%
! CTCACCTAATGAAGATTTTG+TGG - chr2_1:24757898-24757917 None:intergenic 35.0%
CACAAAATCTTCATTAGGTG+AGG + chr2_1:24757896-24757915 Msa0202380:intron 35.0%
CATTAGGTGAGGAAAAAAGA+TGG + chr2_1:24757907-24757926 Msa0202380:intron 35.0%
GGTTTATGCAGATAAGTGAA+TGG + chr2_1:24757967-24757986 Msa0202380:intron 35.0%
CGTTCTCTAATGCAATCTCT+TGG + chr2_1:24753307-24753326 Msa0202380:CDS 40.0%
GATGCTCTCACATTTGTCTT+TGG + chr2_1:24753329-24753348 Msa0202380:CDS 40.0%
GAATAGTCGTTTGTCCTTCT+TGG + chr2_1:24753497-24753516 Msa0202380:intron 40.0%
ACACTCCCTAAAGAAGAACT+TGG - chr2_1:24753555-24753574 None:intergenic 40.0%
AAAGTGATCTCTCGTGAATC+CGG - chr2_1:24753718-24753737 None:intergenic 40.0%
TAAAAGCTAGTCCAGGAACA+CGG - chr2_1:24753951-24753970 None:intergenic 40.0%
TGATTCCTAAAAGCTAGTCC+AGG - chr2_1:24753958-24753977 None:intergenic 40.0%
!! CAATTGTTGCAGCTCTAAGT+AGG - chr2_1:24753986-24754005 None:intergenic 40.0%
CTACTTAGAGCTGCAACAAT+TGG + chr2_1:24753984-24754003 Msa0202380:CDS 40.0%
TAGGACAACAAGTACTAACC+TGG - chr2_1:24754053-24754072 None:intergenic 40.0%
TTTACAGGAAGCAAGGATCA+AGG + chr2_1:24754135-24754154 Msa0202380:CDS 40.0%
TCCCGTAAGTACAGTTCAAA+TGG + chr2_1:24754387-24754406 Msa0202380:intron 40.0%
GAAGATGAAGATGATGAAGG+TGG - chr2_1:24754662-24754681 None:intergenic 40.0%
ATGAGATCACTATCAACAGC+AGG + chr2_1:24754683-24754702 Msa0202380:CDS 40.0%
AGAGATGAGTATTCAGGAGT+AGG - chr2_1:24754713-24754732 None:intergenic 40.0%
!! TTTACTCCTCCAAGTTGGTT+AGG - chr2_1:24754788-24754807 None:intergenic 40.0%
GGCAATTGTTGAAGTTGAAG+AGG - chr2_1:24754848-24754867 None:intergenic 40.0%
! GGGGTGTAGATAGAACATTT+TGG - chr2_1:24754937-24754956 None:intergenic 40.0%
!! AGGTTGATGTTGATGAGAAG+GGG - chr2_1:24754957-24754976 None:intergenic 40.0%
!! GAGGTTGATGTTGATGAGAA+GGG - chr2_1:24754958-24754977 None:intergenic 40.0%
!! TGAGGTTGATGTTGATGAGA+AGG - chr2_1:24754959-24754978 None:intergenic 40.0%
! TGTGCCACATAATTTTGCTG+AGG - chr2_1:24754977-24754996 None:intergenic 40.0%
! GATGAAGTTGATTACTCGAG+GGG - chr2_1:24755150-24755169 None:intergenic 40.0%
! CTTAGAGCATTACTTCCTCA+AGG + chr2_1:24755223-24755242 Msa0202380:CDS 40.0%
GATCGCTTAAGTAAGATCTC+AGG + chr2_1:24755466-24755485 Msa0202380:intron 40.0%
CTCCTTAGCTGTTATCAGTA+TGG - chr2_1:24755738-24755757 None:intergenic 40.0%
GGAGACATTGAGATCTTTGA+TGG + chr2_1:24755754-24755773 Msa0202380:CDS 40.0%
CGTTACATGCAAAACTCGAA+CGG - chr2_1:24755900-24755919 None:intergenic 40.0%
!! CGTTCGAGTTTTGCATGTAA+CGG + chr2_1:24755898-24755917 Msa0202380:CDS 40.0%
!! GTTCGAGTTTTGCATGTAAC+GGG + chr2_1:24755899-24755918 Msa0202380:CDS 40.0%
!! TTCGAGTTTTGCATGTAACG+GGG + chr2_1:24755900-24755919 Msa0202380:CDS 40.0%
ATCCTTTCTCACACTTGAGA+TGG + chr2_1:24756587-24756606 Msa0202380:intron 40.0%
!! CTAGGGTGGGAAAGTATTTA+TGG - chr2_1:24756811-24756830 None:intergenic 40.0%
AATAAGGCAATTGCTAGGGT+GGG - chr2_1:24756824-24756843 None:intergenic 40.0%
AAATAAGGCAATTGCTAGGG+TGG - chr2_1:24756825-24756844 None:intergenic 40.0%
GGCTGCATAAACTTTATCAC+AGG + chr2_1:24756970-24756989 Msa0202380:intron 40.0%
! CGACATAATAATGGGGTTCT+AGG - chr2_1:24756998-24757017 None:intergenic 40.0%
AGCATGTCTCATTGCAATGT+CGG + chr2_1:24757643-24757662 Msa0202380:intron 40.0%
TCTGCATAAACCACCAAAAC+TGG - chr2_1:24757959-24757978 None:intergenic 40.0%
! AATTCAGTTCTGACGGCTAC+AGG - chr2_1:24753283-24753302 None:intergenic 45.0%
AGTCGTTTGTCCTTCTTGGA+TGG + chr2_1:24753501-24753520 Msa0202380:intron 45.0%
AGATTCGCTCTTCAACCTTG+TGG + chr2_1:24753744-24753763 Msa0202380:intron 45.0%
CTCTTCAACCTTGTGGTTCT+CGG + chr2_1:24753751-24753770 Msa0202380:intron 45.0%
!!! GTTTTGTTTAGCCGTGTTCC+TGG + chr2_1:24753937-24753956 Msa0202380:intron 45.0%
!!! GTGTTCCTGGACTAGCTTTT+AGG + chr2_1:24753950-24753969 Msa0202380:CDS 45.0%
! GTTTTCATGGGGTGCAACAA+AGG + chr2_1:24754245-24754264 Msa0202380:CDS 45.0%
AATTGAGGTGGAGAAGTTCC+AGG - chr2_1:24754755-24754774 None:intergenic 45.0%
GGATCAGGTGAAAATTGAGG+TGG - chr2_1:24754767-24754786 None:intergenic 45.0%
TCACCTGATCCTAACCAACT+TGG + chr2_1:24754776-24754795 Msa0202380:CDS 45.0%
! TTTGAAACAGGCCTCATTGG+TGG - chr2_1:24754815-24754834 None:intergenic 45.0%
! GTGTTTGAAACAGGCCTCAT+TGG - chr2_1:24754818-24754837 None:intergenic 45.0%
! GGTTGATGTTGATGAGAAGG+GGG - chr2_1:24754956-24754975 None:intergenic 45.0%
CATCCAGAAGCTAGTGCATT+TGG + chr2_1:24754995-24755014 Msa0202380:CDS 45.0%
! CTTCCAAATGCACTAGCTTC+TGG - chr2_1:24755001-24755020 None:intergenic 45.0%
CAGAAGCTAGTGCATTTGGA+AGG + chr2_1:24754999-24755018 Msa0202380:CDS 45.0%
GTACGTACCTTTGTTCCTTG+AGG - chr2_1:24755241-24755260 None:intergenic 45.0%
! GATCTGAGTCTAGTTCCACT+CGG - chr2_1:24755450-24755469 None:intergenic 45.0%
GACTTGCAAGTGAACGTGAT+GGG + chr2_1:24755956-24755975 Msa0202380:CDS 45.0%
CTGAGTAATCCTTAGCCTGA+AGG - chr2_1:24756113-24756132 None:intergenic 45.0%
CTTCAGGCTAAGGATTACTC+AGG + chr2_1:24756111-24756130 Msa0202380:CDS 45.0%
CACCATCTCAAGTGTGAGAA+AGG - chr2_1:24756592-24756611 None:intergenic 45.0%
!!! CTATGCTGACTTGTTTTCGG+TGG - chr2_1:24757202-24757221 None:intergenic 45.0%
TGACTTGATACAGTCCCATG+TGG + chr2_1:24758031-24758050 Msa0202380:CDS 45.0%
!! AAACTATAAAAATTATAAAT+GGG - chr2_1:24756446-24756465 None:intergenic 5.0%
!! AAAACTATAAAAATTATAAA+TGG - chr2_1:24756447-24756466 None:intergenic 5.0%
!!! TTTTTATAGTTTTTTTTTTT+TGG + chr2_1:24756454-24756473 Msa0202380:intron 5.0%
!!! ATTTATATTAATTTTTTTAG+AGG + chr2_1:24757523-24757542 Msa0202380:intron 5.0%
! AGTTCTGACGGCTACAGGAA+GGG - chr2_1:24753278-24753297 None:intergenic 50.0%
TGCGCAGGCGGATATTCAAA+CGG + chr2_1:24754577-24754596 Msa0202380:intron 50.0%
!! CCTCCAAGTTGGTTAGGATC+AGG - chr2_1:24754782-24754801 None:intergenic 50.0%
CCTGATCCTAACCAACTTGG+AGG + chr2_1:24754779-24754798 Msa0202380:CDS 50.0%
GGACTTGCAAGTGAACGTGA+TGG + chr2_1:24755955-24755974 Msa0202380:CDS 50.0%
GCAGATAAGTGAATGGGACG+AGG + chr2_1:24757974-24757993 Msa0202380:intron 50.0%
TCTTCTCACTGCTTCCTGGA+AGG - chr2_1:24758003-24758022 None:intergenic 50.0%
! CAGTTCTGACGGCTACAGGA+AGG - chr2_1:24753279-24753298 None:intergenic 55.0%
GTCTCGAACCGAGAACCACA+AGG - chr2_1:24753762-24753781 None:intergenic 55.0%
TGAGGTGGAGAAGTTCCAGG+TGG - chr2_1:24754752-24754771 None:intergenic 55.0%
CCACTCTTCTCACTGCTTCC+TGG - chr2_1:24758007-24758026 None:intergenic 55.0%
CCAGGAAGCAGTGAGAAGAG+TGG + chr2_1:24758004-24758023 Msa0202380:CDS 55.0%
CCTGCGCAGCCGGAAAAATG+TGG - chr2_1:24754565-24754584 None:intergenic 60.0%
! CCACATTTTTCCGGCTGCGC+AGG + chr2_1:24754562-24754581 Msa0202380:intron 60.0%
! CATTTTTCCGGCTGCGCAGG+CGG + chr2_1:24754565-24754584 Msa0202380:intron 60.0%
TGAATATCCGCCTGCGCAGC+CGG - chr2_1:24754575-24754594 None:intergenic 60.0%
ATGGGACGAGGAAGCCTTCC+AGG + chr2_1:24757986-24758005 Msa0202380:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 24753259 24758067 24753259 ID=Msa0202380;Name=Msa0202380
chr2_1 mRNA 24753259 24758067 24753259 ID=Msa0202380-mRNA-1;Parent=Msa0202380;Name=Msa0202380-mRNA-1;_AED=0.02;_eAED=0.03;_QI=0|0.14|0|1|0.85|0.75|8|0|540
chr2_1 exon 24753259 24753374 24753259 ID=Msa0202380-mRNA-1:exon:9448;Parent=Msa0202380-mRNA-1
chr2_1 exon 24753503 24753628 24753503 ID=Msa0202380-mRNA-1:exon:9449;Parent=Msa0202380-mRNA-1
chr2_1 exon 24753948 24754057 24753948 ID=Msa0202380-mRNA-1:exon:9450;Parent=Msa0202380-mRNA-1
chr2_1 exon 24754119 24754156 24754119 ID=Msa0202380-mRNA-1:exon:9451;Parent=Msa0202380-mRNA-1
chr2_1 exon 24754239 24754301 24754239 ID=Msa0202380-mRNA-1:exon:9452;Parent=Msa0202380-mRNA-1
chr2_1 exon 24754584 24755252 24754584 ID=Msa0202380-mRNA-1:exon:9453;Parent=Msa0202380-mRNA-1
chr2_1 exon 24755722 24756132 24755722 ID=Msa0202380-mRNA-1:exon:9454;Parent=Msa0202380-mRNA-1
chr2_1 exon 24757978 24758067 24757978 ID=Msa0202380-mRNA-1:exon:9455;Parent=Msa0202380-mRNA-1
chr2_1 CDS 24753259 24753374 24753259 ID=Msa0202380-mRNA-1:cds;Parent=Msa0202380-mRNA-1
chr2_1 CDS 24753503 24753628 24753503 ID=Msa0202380-mRNA-1:cds;Parent=Msa0202380-mRNA-1
chr2_1 CDS 24753948 24754057 24753948 ID=Msa0202380-mRNA-1:cds;Parent=Msa0202380-mRNA-1
chr2_1 CDS 24754119 24754156 24754119 ID=Msa0202380-mRNA-1:cds;Parent=Msa0202380-mRNA-1
chr2_1 CDS 24754239 24754301 24754239 ID=Msa0202380-mRNA-1:cds;Parent=Msa0202380-mRNA-1
chr2_1 CDS 24754584 24755252 24754584 ID=Msa0202380-mRNA-1:cds;Parent=Msa0202380-mRNA-1
chr2_1 CDS 24755722 24756132 24755722 ID=Msa0202380-mRNA-1:cds;Parent=Msa0202380-mRNA-1
chr2_1 CDS 24757978 24758067 24757978 ID=Msa0202380-mRNA-1:cds;Parent=Msa0202380-mRNA-1
Gene Sequence

>Msa0202380

ATGGAAGGTGTCTTTTCCCTTCCTGTAGCCGTCAGAACTGAATTTATCCGTTCTCTAATGCAATCTCTTGGATGCTCTCACATTTGTCTTTGGTCATATGATACCATATTATCAAATCGTTTGTCCTTCTTGGATGGTTTCTACAATGTGATAAACGATCAATTACCAAGTTCTTCTTTAGGGAGTGTAGCACAACAGCTTTTTAATCAATACAGGATTTTATCATTTGATGTCAATGATGACCGTGTTCCTGGACTAGCTTTTAGGAATCAACGTCCCTACTTAGAGCTGCAACAATTGGAACTTCTTACACTGTCATCAACAGAAATACAGACACAATTCTACCAGGTTAGTAGCATGTTTTTGTTTTTACAGGAAGCAAGGATCAAGACTGTTGTTTTCATGGGGTGCAACAAAGGAGAAATTGAGCTTGGTTTCTTAAATATGTCTCAAGCGGATATTCAAACGGCACTTAGCAGTCTATTTCCTGAAGATTTTTCAAGACAGACACAACAAATTAATCAAAATCCACCTTCATCATCTTCATCTTCAATGAGATCACTATCAACAGCAGGTAGTCCTACTCCTGAATACTCATCTCTCATATTCAACATAAATCCACCTGGAACTTCTCCACCTCAATTTTCACCTGATCCTAACCAACTTGGAGGAGTAAATATTCCACCAATGAGGCCTGTTTCAAACACATTACTACCTCTTCAACTTCAACAATTGCCTCAAATCACACCAACACAATTATTCCCTACAACACAAATTGAGAATGATGTAATAATGAGAGCAATCCAAAATGTTCTATCTACACCCCCTTCTCATCAACATCAACCTCAGCAAAATTATGTGGCACATCCAGAAGCTAGTGCATTTGGAAGGTATAGACATGATAAAAGTCCTAATATAGGGTCAAATTTTAGAAGACAAAGTTTGATGAAGAGATCATTTGCATTCTTTAGAAGCTTGAATTTGATGAGAATGAGAGATCGAAATCAAGCGGCGCGCCCCTCGAGTAATCAACTTCATCATATGATATCAGAGCGACGAAGACGAGAGAAGCTTAATGAGAATTTTCAAGCACTTAGAGCATTACTTCCTCAAGGAACAAAGAAAGACAAAGCTTCCATACTGATAACAGCTAAGGAGACATTGAGATCTTTGATGGCTGAAATTGACAAACTAAGCAAAAGAAATCAAGAATTGATGTCACAACAATTGGCAGCAGCAAATAAAGAATCTACAACAACTGAAGAAATTATCAAATTCTCATCAAATGAAAGATTAACCGTTCGAGTTTTGCATGTAACGGGGTCGAGTTCATCAGAAGATGAATCAATGGTAGTGGACTTGCAAGTGAACGTGATGGGACAAATTTCTCAAGTTGATGTATTGATTCGATTATTGGAATTCTTAAATCATGATCAACATGTCAACTTGGTTTCAATGGATGCAACAAATACAAATCATGCACCAGGGAATGATTTACTTCATCAAATAACCTTCAGGCTAAGGATTACTCAGATAAGTGAATGGGACGAGGAAGCCTTCCAGGAAGCAGTGAGAAGAGTGGTTGCTGACTTGATACAGTCCCATGTGGACCAAAATATATGA

Protein sequence

>Msa0202380

MEGVFSLPVAVRTEFIRSLMQSLGCSHICLWSYDTILSNRLSFLDGFYNVINDQLPSSSLGSVAQQLFNQYRILSFDVNDDRVPGLAFRNQRPYLELQQLELLTLSSTEIQTQFYQVSSMFLFLQEARIKTVVFMGCNKGEIELGFLNMSQADIQTALSSLFPEDFSRQTQQINQNPPSSSSSSMRSLSTAGSPTPEYSSLIFNINPPGTSPPQFSPDPNQLGGVNIPPMRPVSNTLLPLQLQQLPQITPTQLFPTTQIENDVIMRAIQNVLSTPPSHQHQPQQNYVAHPEASAFGRYRHDKSPNIGSNFRRQSLMKRSFAFFRSLNLMRMRDRNQAARPSSNQLHHMISERRRREKLNENFQALRALLPQGTKKDKASILITAKETLRSLMAEIDKLSKRNQELMSQQLAAANKESTTTEEIIKFSSNERLTVRVLHVTGSSSSEDESMVVDLQVNVMGQISQVDVLIRLLEFLNHDQHVNLVSMDATNTNHAPGNDLLHQITFRLRITQISEWDEEAFQEAVRRVVADLIQSHVDQNI*