Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307930 | sp|P27061|PPA1_SOLLC | 43.636 | 220 | 120 | 3 | 68 | 287 | 39 | 254 | 1.50e-60 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307930 | I3T0R9 | 91.724 | 290 | 18 | 3 | 2 | 288 | 1 | 287 | 9.71e-171 | 483 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030800 | Msa1307930 | 0.831461 | 1.647701e-55 | -8.615850e-47 |
| Msa0051480 | Msa1307930 | 0.806013 | 1.010644e-49 | -8.615850e-47 |
| Msa0071470 | Msa1307930 | 0.800652 | 1.303738e-48 | -8.615850e-47 |
| Msa0078210 | Msa1307930 | 0.823189 | 1.583806e-53 | -8.615850e-47 |
| Msa0089890 | Msa1307930 | 0.806677 | 7.323312e-50 | -8.615850e-47 |
| Msa0092970 | Msa1307930 | 0.817469 | 3.244552e-52 | -8.615850e-47 |
| Msa0740630 | Msa1307930 | 0.814221 | 1.720670e-51 | -8.615850e-47 |
| Msa0744550 | Msa1307930 | 0.801747 | 7.782889e-49 | -8.615850e-47 |
| Msa0744560 | Msa1307930 | 0.816979 | 4.182625e-52 | -8.615850e-47 |
| Msa0746340 | Msa1307930 | 0.873944 | 9.927340e-68 | -8.615850e-47 |
| Msa0804870 | Msa1307930 | 0.812890 | 3.376037e-51 | -8.615850e-47 |
| Msa0820880 | Msa1307930 | 0.815006 | 1.153240e-51 | -8.615850e-47 |
| Msa0136240 | Msa1307930 | 0.800716 | 1.264802e-48 | -8.615850e-47 |
| Msa0146200 | Msa1307930 | 0.806624 | 7.514087e-50 | -8.615850e-47 |
| Msa0162680 | Msa1307930 | 0.837291 | 5.668522e-57 | -8.615850e-47 |
| Msa0185100 | Msa1307930 | 0.817194 | 3.742595e-52 | -8.615850e-47 |
| Msa1227710 | Msa1307930 | 0.860005 | 2.792702e-63 | -8.615850e-47 |
| Msa1256600 | Msa1307930 | 0.834404 | 3.056188e-56 | -8.615850e-47 |
| Msa1263500 | Msa1307930 | 0.821558 | 3.787158e-53 | -8.615850e-47 |
| Msa1307930 | Msa1333700 | 0.871265 | 7.795599e-67 | -8.615850e-47 |
| Msa1307930 | Msa1369450 | 0.911389 | 6.425672e-83 | -8.615850e-47 |
| Msa1307930 | Msa1387610 | 0.832502 | 9.115954e-56 | -8.615850e-47 |
| Msa1307930 | Msa1399930 | 0.802494 | 5.462656e-49 | -8.615850e-47 |
| Msa1307930 | Msa1427000 | 0.800266 | 1.562055e-48 | -8.615850e-47 |
| Msa1307930 | Msa1438160 | 0.832591 | 8.664006e-56 | -8.615850e-47 |
| Msa1307930 | Msa1449470 | 0.824595 | 7.412205e-54 | -8.615850e-47 |
| Msa1307930 | Msa1453600 | 0.815128 | 1.083300e-51 | -8.615850e-47 |
| Msa0438070 | Msa1307930 | 0.803989 | 2.678270e-49 | -8.615850e-47 |
| Msa0476770 | Msa1307930 | 0.816531 | 5.271315e-52 | -8.615850e-47 |
| Msa0480540 | Msa1307930 | 0.802608 | 5.175200e-49 | -8.615850e-47 |
| Msa0480550 | Msa1307930 | 0.818648 | 1.756845e-52 | -8.615850e-47 |
| Msa0481770 | Msa1307930 | 0.813244 | 2.823441e-51 | -8.615850e-47 |
| Msa1027910 | Msa1307930 | 0.824037 | 1.002909e-53 | -8.615850e-47 |
| Msa1030210 | Msa1307930 | 0.800997 | 1.108429e-48 | -8.615850e-47 |
| Msa1064240 | Msa1307930 | 0.810215 | 1.287682e-50 | -8.615850e-47 |
| Msa0267900 | Msa1307930 | 0.824918 | 6.220905e-54 | -8.615850e-47 |
| Msa0306310 | Msa1307930 | 0.805684 | 1.185519e-49 | -8.615850e-47 |
| Msa1184400 | Msa1307930 | 0.915943 | 3.223365e-85 | -8.615850e-47 |
| Msa1223560 | Msa1307930 | 0.824438 | 8.072447e-54 | -8.615850e-47 |
| Msa1224510 | Msa1307930 | 0.868509 | 6.193775e-66 | -8.615850e-47 |
| Msa0500770 | Msa1307930 | 0.819568 | 1.084609e-52 | -8.615850e-47 |
| Msa0550550 | Msa1307930 | 0.800337 | 1.511169e-48 | -8.615850e-47 |
| Msa0568110 | Msa1307930 | 0.810209 | 1.291513e-50 | -8.615850e-47 |
| Msa0570460 | Msa1307930 | 0.813349 | 2.677378e-51 | -8.615850e-47 |
| Msa0848020 | Msa1307930 | 0.837495 | 5.025129e-57 | -8.615850e-47 |
| Msa0859040 | Msa1307930 | 0.802182 | 6.332831e-49 | -8.615850e-47 |
| Msa0865830 | Msa1307930 | 0.806328 | 8.675519e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307930 | MtrunA17_Chr8g0334461 | 92.069 | 290 | 17 | 3 | 2 | 288 | 1 | 287 | 1.87e-174 | 483 |
| Msa1307930 | MtrunA17_Chr8g0340031 | 60.455 | 220 | 84 | 2 | 68 | 287 | 33 | 249 | 6.24e-98 | 288 |
| Msa1307930 | MtrunA17_Chr8g0356021 | 46.512 | 215 | 111 | 3 | 74 | 288 | 49 | 259 | 2.55e-64 | 202 |
| Msa1307930 | MtrunA17_Chr8g0340821 | 43.519 | 216 | 116 | 4 | 74 | 288 | 51 | 261 | 1.08e-61 | 196 |
| Msa1307930 | MtrunA17_Chr8g0340811 | 43.519 | 216 | 116 | 4 | 74 | 288 | 54 | 264 | 1.51e-61 | 196 |
| Msa1307930 | MtrunA17_Chr8g0340021 | 63.077 | 130 | 48 | 0 | 158 | 287 | 23 | 152 | 5.52e-60 | 187 |
| Msa1307930 | MtrunA17_Chr6g0487381 | 43.578 | 218 | 117 | 4 | 71 | 287 | 39 | 251 | 9.80e-58 | 185 |
| Msa1307930 | MtrunA17_Chr8g0334471 | 98.592 | 71 | 1 | 0 | 160 | 230 | 7 | 77 | 2.36e-49 | 158 |
| Msa1307930 | MtrunA17_Chr1g0168451 | 37.615 | 218 | 133 | 3 | 71 | 288 | 52 | 266 | 3.84e-48 | 161 |
| Msa1307930 | MtrunA17_Chr1g0186301 | 36.364 | 220 | 135 | 5 | 69 | 288 | 48 | 262 | 1.21e-42 | 147 |
| Msa1307930 | MtrunA17_Chr7g0265641 | 38.739 | 111 | 66 | 2 | 161 | 270 | 6 | 115 | 6.58e-20 | 83.6 |
| Msa1307930 | MtrunA17_Chr8g0356651 | 43.182 | 88 | 46 | 2 | 74 | 161 | 52 | 135 | 1.69e-18 | 80.9 |
| Msa1307930 | MtrunA17_Chr8g0356661 | 57.407 | 54 | 23 | 0 | 232 | 285 | 1 | 54 | 3.52e-16 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307930 | AT2G38600.2 | 58.650 | 237 | 93 | 3 | 53 | 287 | 17 | 250 | 3.26e-95 | 281 |
| Msa1307930 | AT2G38600.1 | 58.650 | 237 | 93 | 3 | 53 | 287 | 17 | 250 | 3.26e-95 | 281 |
| Msa1307930 | AT4G29270.1 | 42.202 | 218 | 122 | 3 | 71 | 288 | 43 | 256 | 2.08e-62 | 198 |
| Msa1307930 | AT4G29260.1 | 43.891 | 221 | 120 | 3 | 67 | 287 | 38 | 254 | 2.48e-61 | 195 |
| Msa1307930 | AT4G25150.1 | 43.925 | 214 | 116 | 3 | 74 | 287 | 50 | 259 | 1.44e-60 | 193 |
| Msa1307930 | AT5G51260.1 | 39.754 | 244 | 138 | 4 | 44 | 287 | 22 | 256 | 9.35e-60 | 191 |
| Msa1307930 | AT1G04040.1 | 36.948 | 249 | 149 | 5 | 46 | 288 | 25 | 271 | 3.79e-50 | 167 |
| Msa1307930 | AT5G44020.1 | 37.273 | 220 | 134 | 4 | 71 | 288 | 55 | 272 | 5.74e-47 | 159 |
| Msa1307930 | AT5G24780.1 | 35.648 | 216 | 131 | 7 | 74 | 287 | 59 | 268 | 1.35e-39 | 139 |
| Msa1307930 | AT5G24770.1 | 36.111 | 216 | 130 | 7 | 74 | 287 | 54 | 263 | 1.64e-39 | 139 |
| Msa1307930 | AT5G51260.2 | 36.364 | 187 | 110 | 4 | 44 | 230 | 22 | 199 | 5.62e-38 | 133 |
| Msa1307930 | AT5G24780.2 | 32.298 | 161 | 103 | 5 | 74 | 232 | 59 | 215 | 2.89e-24 | 98.2 |
| Msa1307930 | AT5G24770.2 | 33.333 | 159 | 100 | 5 | 74 | 230 | 54 | 208 | 1.27e-23 | 95.9 |
Find 84 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTGTCCGTAGTGATTT+TGG | 0.138152 | 8_4:-3984723 | None:intergenic |
| TCATCAAGATGCTTGGATTT+TGG | 0.148705 | 8_4:+3984404 | Msa1307930:CDS |
| AAGAGGAAGGGTATAGAATA+TGG | 0.225208 | 8_4:+3987567 | Msa1307930:CDS |
| AAAGCAGAATATATATAATA+AGG | 0.234689 | 8_4:-3983936 | None:intergenic |
| TTGTTAATTACCTTAAAATA+AGG | 0.238981 | 8_4:-3984775 | None:intergenic |
| AATCTCTTAGCTTTATAATA+AGG | 0.250871 | 8_4:-3984456 | None:intergenic |
| TATTATAAAGCTAAGAGATT+TGG | 0.260805 | 8_4:+3984459 | Msa1307930:CDS |
| ATTATAAAGCTAAGAGATTT+GGG | 0.319914 | 8_4:+3984460 | Msa1307930:CDS |
| TGATCTCCAAGGGGAGTGTT+TGG | 0.332481 | 8_4:+3987613 | Msa1307930:CDS |
| TTCTTCGTCGTCGGAGATGA+TGG | 0.343997 | 8_4:+3984173 | Msa1307930:CDS |
| AATATATGAACAAATTGATT+AGG | 0.351239 | 8_4:-3983969 | None:intergenic |
| CTTAGTACCACAGGGTTTGC+AGG | 0.358088 | 8_4:-3984629 | None:intergenic |
| AATTTGTTGGCAATGGCATT+AGG | 0.359973 | 8_4:-3983892 | None:intergenic |
| TTCAAAGTGTTCTTAGTAAC+GGG | 0.404621 | 8_4:+3984680 | Msa1307930:CDS |
| TTGAACATCGCCGAATCAAA+TGG | 0.405341 | 8_4:-3984581 | None:intergenic |
| GAAATGCAGTACATAGGATT+GGG | 0.410928 | 8_4:-3987656 | None:intergenic |
| AAGCAGAATATATATAATAA+GGG | 0.423271 | 8_4:-3983935 | None:intergenic |
| GATCTCCAAGGGGAGTGTTT+GGG | 0.434280 | 8_4:+3987614 | Msa1307930:CDS |
| TGCCATTGCCAACAAATTCT+CGG | 0.438024 | 8_4:+3983897 | Msa1307930:five_prime_UTR |
| CTAGAAGAAGATTAGAAGAA+AGG | 0.444493 | 8_4:-3983829 | None:intergenic |
| AAAGATATTGCAAGCAGTAT+TGG | 0.455653 | 8_4:+3984020 | Msa1307930:CDS |
| CAAACAATAATGTGCGTCCT+TGG | 0.456134 | 8_4:+3984247 | Msa1307930:CDS |
| CGGAAGGAGATTGAAGAGGA+AGG | 0.460525 | 8_4:+3987554 | Msa1307930:CDS |
| TATAGAATATGGGGAAATGT+AGG | 0.464952 | 8_4:+3987578 | Msa1307930:CDS |
| AGAGGAAGGGTATAGAATAT+GGG | 0.466203 | 8_4:+3987568 | Msa1307930:CDS |
| TTTCTTACATGGATTGATGA+TGG | 0.469031 | 8_4:-3983793 | None:intergenic |
| ATTTGATTCGGCGATGTTCA+AGG | 0.469405 | 8_4:+3984583 | Msa1307930:CDS |
| AGAAATGCAGTACATAGGAT+TGG | 0.475430 | 8_4:-3987657 | None:intergenic |
| TGAACATCGCCGAATCAAAT+GGG | 0.497521 | 8_4:-3984580 | None:intergenic |
| CTACTACTCATCAAGATGCT+TGG | 0.498659 | 8_4:+3984397 | Msa1307930:CDS |
| CAGATGCGACCCATTTGATT+CGG | 0.501157 | 8_4:+3984571 | Msa1307930:intron |
| TTAAACAATCTTAGTACCAC+AGG | 0.502868 | 8_4:-3984638 | None:intergenic |
| ATGAGAGGTATGGGCTGAGC+TGG | 0.503269 | 8_4:+3984208 | Msa1307930:CDS |
| CATGTTGAGAATTACATGAT+TGG | 0.504365 | 8_4:+3984297 | Msa1307930:CDS |
| AAATGTGTCCGAGAATTTGT+TGG | 0.506283 | 8_4:-3983905 | None:intergenic |
| ATTCAAAGTGTTCTTAGTAA+CGG | 0.509245 | 8_4:+3984679 | Msa1307930:CDS |
| GAATATATATAATAAGGGAT+TGG | 0.510983 | 8_4:-3983930 | None:intergenic |
| GTTGGTAGCCGATGAATCCT+TGG | 0.512582 | 8_4:-3984751 | None:intergenic |
| TGAAATACAAGTCATCGATT+CGG | 0.520247 | 8_4:+3987534 | Msa1307930:CDS |
| ATTCGGCGATGTTCAAGGCA+TGG | 0.525698 | 8_4:+3984588 | Msa1307930:CDS |
| GTTGATGATGATGAGAGGTA+TGG | 0.526024 | 8_4:+3984198 | Msa1307930:CDS |
| CCCCTTGGAGATCAGTCCAC+TGG | 0.527498 | 8_4:-3987604 | None:intergenic |
| TTCAAGGCATGGATTAATCA+AGG | 0.531044 | 8_4:+3984599 | Msa1307930:CDS |
| GTTGAGAATTACATGATTGG+TGG | 0.532110 | 8_4:+3984300 | Msa1307930:CDS |
| TGAGTAGTAGAAGTAGAAAG+AGG | 0.532684 | 8_4:-3984384 | None:intergenic |
| TTGCATAACCAAGGATTCAT+CGG | 0.534552 | 8_4:+3984743 | Msa1307930:CDS |
| TTTAAAACGTTGATAGACAA+AGG | 0.537850 | 8_4:+3984656 | Msa1307930:CDS |
| GGAAGGAGATTGAAGAGGAA+GGG | 0.539212 | 8_4:+3987555 | Msa1307930:CDS |
| ATATTGCAAGCAGTATTGGC+GGG | 0.541832 | 8_4:+3984024 | Msa1307930:CDS |
| AATCAAGAAATGCAGTACAT+AGG | 0.552007 | 8_4:-3987662 | None:intergenic |
| GATTGCCCAAACACTCCCCT+TGG | 0.552792 | 8_4:-3987619 | None:intergenic |
| GTATGGGCTGAGCTGGAGGT+TGG | 0.553413 | 8_4:+3984215 | Msa1307930:CDS |
| TTTGTTGAGTACTACACAAG+TGG | 0.559383 | 8_4:-3987702 | None:intergenic |
| GTCCGAGAATTTGTTGGCAA+TGG | 0.560861 | 8_4:-3983899 | None:intergenic |
| GATATTGCAAGCAGTATTGG+CGG | 0.561358 | 8_4:+3984023 | Msa1307930:CDS |
| GCTGAGCTGGAGGTTGGCAA+TGG | 0.567591 | 8_4:+3984221 | Msa1307930:CDS |
| TTAGTACCACAGGGTTTGCA+GGG | 0.578209 | 8_4:-3984628 | None:intergenic |
| ACCAGTGGACTGATCTCCAA+GGG | 0.586615 | 8_4:+3987603 | Msa1307930:CDS |
| CGAAGTGGGACTGTCTTCCA+AGG | 0.589549 | 8_4:-3984264 | None:intergenic |
| TTCGTCGTCGGAGATGATGG+TGG | 0.596102 | 8_4:+3984176 | Msa1307930:CDS |
| GGCAGGAGTGTGAAATACAA+AGG | 0.596346 | 8_4:+3987500 | Msa1307930:intron |
| ATTACCTTAAAATAAGGCGT+TGG | 0.596763 | 8_4:-3984769 | None:intergenic |
| GAGGAAGGGTATAGAATATG+GGG | 0.605333 | 8_4:+3987569 | Msa1307930:CDS |
| TTGATGATGATGAGAGGTAT+GGG | 0.609061 | 8_4:+3984199 | Msa1307930:CDS |
| TATTAAGCAATCTAGTGTTG+AGG | 0.609828 | 8_4:+3984067 | Msa1307930:CDS |
| ACATGCTTGTAGCAACGAAG+TGG | 0.613933 | 8_4:-3984279 | None:intergenic |
| TATTGCAAGCAGTATTGGCG+GGG | 0.620877 | 8_4:+3984025 | Msa1307930:CDS |
| AACACTTGCCAAAATCACTA+CGG | 0.621427 | 8_4:+3984715 | Msa1307930:CDS |
| AGATTAGAAGAAAGGTACTA+CGG | 0.624949 | 8_4:-3983821 | None:intergenic |
| ACGGACAATTTGCATAACCA+AGG | 0.630462 | 8_4:+3984734 | Msa1307930:CDS |
| ATACAAGTCATCGATTCGGA+AGG | 0.633877 | 8_4:+3987538 | Msa1307930:CDS |
| AGAGGTATGGGCTGAGCTGG+AGG | 0.636934 | 8_4:+3984211 | Msa1307930:CDS |
| GACCAGTGGACTGATCTCCA+AGG | 0.637891 | 8_4:+3987602 | Msa1307930:CDS |
| CATGCTTGTAGCAACGAAGT+GGG | 0.638112 | 8_4:-3984278 | None:intergenic |
| AAATGCAGTACATAGGATTG+GGG | 0.643105 | 8_4:-3987655 | None:intergenic |
| GATTCGGAAGGAGATTGAAG+AGG | 0.657286 | 8_4:+3987550 | Msa1307930:CDS |
| ACACAATTTCATCCACGATG+AGG | 0.660835 | 8_4:-3984344 | None:intergenic |
| TAAACAATCTTAGTACCACA+GGG | 0.665394 | 8_4:-3984637 | None:intergenic |
| GGGGAAATGTAGGAGACCAG+TGG | 0.670649 | 8_4:+3987588 | Msa1307930:CDS |
| TGGTGGTTGATGATGATGAG+AGG | 0.675061 | 8_4:+3984193 | Msa1307930:CDS |
| TTAGTAACGGGTAGATACGA+AGG | 0.691062 | 8_4:+3984692 | Msa1307930:CDS |
| CCAGTGGACTGATCTCCAAG+GGG | 0.746364 | 8_4:+3987604 | Msa1307930:CDS |
| GCATGACATGAACCTCATCG+TGG | 0.754708 | 8_4:+3984332 | Msa1307930:CDS |
| AATGTGCCCTGCAAACCCTG+TGG | 0.782788 | 8_4:+3984622 | Msa1307930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTATATGTTAAACT+TGG | + | chr8_4:3984507-3984526 | Msa1307930:intron | 10.0% |
| !!! | TTTTATTATATGTTAAACTT+GGG | + | chr8_4:3984508-3984527 | Msa1307930:intron | 10.0% |
| !!! | ATTTTTTTATGATATGATAT+TGG | + | chr8_4:3984544-3984563 | Msa1307930:intron | 10.0% |
| !!! | TTTTTTTATGATATGATATT+GGG | + | chr8_4:3984545-3984564 | Msa1307930:intron | 10.0% |
| !! | ATATATATAATTGGAAATTA+AGG | - | chr8_4:3985541-3985560 | None:intergenic | 10.0% |
| !!! | TAACAATTAATTTTCTTTTT+TGG | + | chr8_4:3986401-3986420 | Msa1307930:intron | 10.0% |
| !! | GTATTCAATTAATAAAAATT+AGG | + | chr8_4:3986650-3986669 | Msa1307930:intron | 10.0% |
| !! | AATAAAAATTAGGTTAAAAA+AGG | + | chr8_4:3986660-3986679 | Msa1307930:intron | 10.0% |
| !! | AAGCAGAATATATATAATAA+GGG | - | chr8_4:3983938-3983957 | None:intergenic | 15.0% |
| !! | AAAGCAGAATATATATAATA+AGG | - | chr8_4:3983939-3983958 | None:intergenic | 15.0% |
| !! | AATATATGAACAAATTGATT+AGG | - | chr8_4:3983972-3983991 | None:intergenic | 15.0% |
| !! | TTTATTATATGTTAAACTTG+GGG | + | chr8_4:3984509-3984528 | Msa1307930:intron | 15.0% |
| !! | TTGTTAATTACCTTAAAATA+AGG | - | chr8_4:3984778-3984797 | None:intergenic | 15.0% |
| !! | ACAGAAAATTATTAATGATT+AGG | + | chr8_4:3985106-3985125 | Msa1307930:intron | 15.0% |
| !!! | ATTTTTTTTTTTGTGATGTT+CGG | + | chr8_4:3985129-3985148 | Msa1307930:intron | 15.0% |
| !! | TAGCTTGATATATATATAAT+TGG | - | chr8_4:3985550-3985569 | None:intergenic | 15.0% |
| !!! | TGTTAACTCTAAAATAAAAT+AGG | - | chr8_4:3985590-3985609 | None:intergenic | 15.0% |
| !!! | ATATACTCTTTTTGTTTTAT+AGG | - | chr8_4:3985738-3985757 | None:intergenic | 15.0% |
| !!! | TGCATTTTCTAATTTTATTA+CGG | + | chr8_4:3985857-3985876 | Msa1307930:intron | 15.0% |
| !!! | ATTTTTCTTTTGAATTTTAG+AGG | - | chr8_4:3986152-3986171 | None:intergenic | 15.0% |
| !!! | TAATTGTTAAAATTGTTTTC+TGG | - | chr8_4:3986390-3986409 | None:intergenic | 15.0% |
| !! | AACAATTTCATAATATCAAA+AGG | - | chr8_4:3986427-3986446 | None:intergenic | 15.0% |
| !!! | AATTTATTGAAAGTATAAAC+AGG | - | chr8_4:3986589-3986608 | None:intergenic | 15.0% |
| !!! | TGTATTCAATTAATTTTTTG+AGG | + | chr8_4:3986623-3986642 | Msa1307930:intron | 15.0% |
| !!! | GTATTCAATTAATTTTTTGA+GGG | + | chr8_4:3986624-3986643 | Msa1307930:intron | 15.0% |
| !! | AAATTCGTAATTAACAATAA+AGG | + | chr8_4:3986753-3986772 | Msa1307930:intron | 15.0% |
| !! | AATTCGTAATTAACAATAAA+GGG | + | chr8_4:3986754-3986773 | Msa1307930:intron | 15.0% |
| !!! | AACTTTTTTTTTCTAACTTA+CGG | + | chr8_4:3986807-3986826 | Msa1307930:intron | 15.0% |
| !! | AGATAAGAAAATATTAGTAT+CGG | - | chr8_4:3987033-3987052 | None:intergenic | 15.0% |
| !!! | CTTTTAACCTTAATATTTAT+TGG | + | chr8_4:3987473-3987492 | Msa1307930:intron | 15.0% |
| !! | GAATATATATAATAAGGGAT+TGG | - | chr8_4:3983933-3983952 | None:intergenic | 20.0% |
| !!! | AATCTCTTAGCTTTATAATA+AGG | - | chr8_4:3984459-3984478 | None:intergenic | 20.0% |
| !! | TATTATAAAGCTAAGAGATT+TGG | + | chr8_4:3984459-3984478 | Msa1307930:CDS | 20.0% |
| !! | ATTATAAAGCTAAGAGATTT+GGG | + | chr8_4:3984460-3984479 | Msa1307930:CDS | 20.0% |
| !! | AATTGAATGTATCTAAAAAG+TGG | - | chr8_4:3985025-3985044 | None:intergenic | 20.0% |
| !! | AATTGAATGTATCTAAAAAG+TGG | + | chr8_4:3985025-3985044 | Msa1307930:intron | 20.0% |
| !!! | TTTTTTTTTTTGTGATGTTC+GGG | + | chr8_4:3985130-3985149 | Msa1307930:intron | 20.0% |
| !! | TTATAACAATGATATTTGTG+TGG | + | chr8_4:3985231-3985250 | Msa1307930:intron | 20.0% |
| !!! | ACTCCTACATTTTTTTTTAA+GGG | - | chr8_4:3985290-3985309 | None:intergenic | 20.0% |
| !!! | TACTCCTACATTTTTTTTTA+AGG | - | chr8_4:3985291-3985310 | None:intergenic | 20.0% |
| !!! | GATTTGGTTAAAATAATACA+AGG | - | chr8_4:3985695-3985714 | None:intergenic | 20.0% |
| !!! | AAGAGTATATTTAATTGACT+TGG | + | chr8_4:3985748-3985767 | Msa1307930:intron | 20.0% |
| !!! | ATATATCCACATTTTCTATT+GGG | + | chr8_4:3985942-3985961 | Msa1307930:intron | 20.0% |
| !!! | TATTGGGATATTTTTTGTAT+TGG | + | chr8_4:3985958-3985977 | Msa1307930:intron | 20.0% |
| !!! | AGGTGTTTTATTTTATTTGA+GGG | - | chr8_4:3986132-3986151 | None:intergenic | 20.0% |
| !! | CAAAACTTACTCATTATATT+TGG | - | chr8_4:3986500-3986519 | None:intergenic | 20.0% |
| !! | AATTAATTATGAAGATTGCA+TGG | - | chr8_4:3986547-3986566 | None:intergenic | 20.0% |
| !!! | ACAGGTTTAATTTTTTTTGA+AGG | - | chr8_4:3986571-3986590 | None:intergenic | 20.0% |
| !! | ATTCGTAATTAACAATAAAG+GGG | + | chr8_4:3986755-3986774 | Msa1307930:intron | 20.0% |
| !!! | CTCTAAAAGTGTTTTTATTA+TGG | - | chr8_4:3987095-3987114 | None:intergenic | 20.0% |
| !!! | CATAATAAAAACACTTTTAG+AGG | + | chr8_4:3987093-3987112 | Msa1307930:intron | 20.0% |
| !!! | GAAATTAAGTTGATTAATGA+TGG | + | chr8_4:3987441-3987460 | Msa1307930:intron | 20.0% |
| !!! | ACCTTAATATTTATTGGTTT+TGG | + | chr8_4:3987479-3987498 | Msa1307930:intron | 20.0% |
| !! | TTTTATGATATGATATTGGG+TGG | + | chr8_4:3984548-3984567 | Msa1307930:intron | 25.0% |
| !! | TTTAAAACGTTGATAGACAA+AGG | + | chr8_4:3984656-3984675 | Msa1307930:CDS | 25.0% |
| !! | ATTCAAAGTGTTCTTAGTAA+CGG | + | chr8_4:3984679-3984698 | Msa1307930:CDS | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | - | chr8_4:3985049-3985068 | None:intergenic | 25.0% |
| ! | CATTCAATTAATGATGTATG+TGG | + | chr8_4:3984975-3984994 | Msa1307930:intron | 25.0% |
| ! | CATTCAATTAATGATGTATG+TGG | - | chr8_4:3984975-3984994 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | + | chr8_4:3985049-3985068 | Msa1307930:intron | 25.0% |
| !!! | TTTTTTTTTTGTGATGTTCG+GGG | + | chr8_4:3985131-3985150 | Msa1307930:intron | 25.0% |
| ! | TCATTGTTATAAAAAGATCC+TGG | - | chr8_4:3985223-3985242 | None:intergenic | 25.0% |
| ! | TGTCCCTTAAAAAAAAATGT+AGG | + | chr8_4:3985284-3985303 | Msa1307930:intron | 25.0% |
| ! | AAAAAAAAATGTAGGAGTAG+TGG | + | chr8_4:3985292-3985311 | Msa1307930:intron | 25.0% |
| ! | TTATTGTTCTGATACTAATG+CGG | - | chr8_4:3985322-3985341 | None:intergenic | 25.0% |
| ! | ACAGATAACCATACTAAAAT+CGG | - | chr8_4:3985392-3985411 | None:intergenic | 25.0% |
| !! | CATATATCCACATTTTCTAT+TGG | + | chr8_4:3985941-3985960 | Msa1307930:intron | 25.0% |
| ! | AAATATCCCAATAGAAAATG+TGG | - | chr8_4:3985951-3985970 | None:intergenic | 25.0% |
| ! | AATTTCACTCGTTAGTTAAA+TGG | + | chr8_4:3986018-3986037 | Msa1307930:intron | 25.0% |
| !!! | TTTTATTTTATTTGAGGGGA+GGG | - | chr8_4:3986127-3986146 | None:intergenic | 25.0% |
| !!! | GGTGTTTTATTTTATTTGAG+GGG | - | chr8_4:3986131-3986150 | None:intergenic | 25.0% |
| !!! | GAGGTGTTTTATTTTATTTG+AGG | - | chr8_4:3986133-3986152 | None:intergenic | 25.0% |
| ! | GAAACTAAAAAAATGCGTAA+TGG | + | chr8_4:3986226-3986245 | Msa1307930:intron | 25.0% |
| ! | CTTGTTTGTAAAAGAAAGTT+TGG | + | chr8_4:3986352-3986371 | Msa1307930:intron | 25.0% |
| ! | ATGAAATTGTTGCATATAAC+TGG | + | chr8_4:3986436-3986455 | Msa1307930:intron | 25.0% |
| ! | AAAAGGTTCAATTAACTTTG+AGG | + | chr8_4:3986677-3986696 | Msa1307930:intron | 25.0% |
| ! | AAAGGTTCAATTAACTTTGA+GGG | + | chr8_4:3986678-3986697 | Msa1307930:intron | 25.0% |
| ! | TTCGTAATTAACAATAAAGG+GGG | + | chr8_4:3986756-3986775 | Msa1307930:intron | 25.0% |
| ! | TACGAAAAATTATCATTCTC+TGG | + | chr8_4:3987166-3987185 | Msa1307930:intron | 25.0% |
| ! | GATGAATGAATGATAGTTTA+TGG | + | chr8_4:3987315-3987334 | Msa1307930:intron | 25.0% |
| ! | TTGTTTATTGACCAAATTGT+TGG | + | chr8_4:3987361-3987380 | Msa1307930:intron | 25.0% |
| ! | TATCGAATAAACCAACAATT+TGG | - | chr8_4:3987375-3987394 | None:intergenic | 25.0% |
| ! | GCCAAAACCAATAAATATTA+AGG | - | chr8_4:3987483-3987502 | None:intergenic | 25.0% |
| !!! | TAATATTTATTGGTTTTGGC+AGG | + | chr8_4:3987483-3987502 | Msa1307930:intron | 25.0% |
| ! | TTTCTTACATGGATTGATGA+TGG | - | chr8_4:3983796-3983815 | None:intergenic | 30.0% |
| !! | AGATTAGAAGAAAGGTACTA+CGG | - | chr8_4:3983824-3983843 | None:intergenic | 30.0% |
| CTAGAAGAAGATTAGAAGAA+AGG | - | chr8_4:3983832-3983851 | None:intergenic | 30.0% | |
| AAAGATATTGCAAGCAGTAT+TGG | + | chr8_4:3984020-3984039 | Msa1307930:CDS | 30.0% | |
| TATTAAGCAATCTAGTGTTG+AGG | + | chr8_4:3984067-3984086 | Msa1307930:CDS | 30.0% | |
| CATGTTGAGAATTACATGAT+TGG | + | chr8_4:3984297-3984316 | Msa1307930:CDS | 30.0% | |
| TAAACAATCTTAGTACCACA+GGG | - | chr8_4:3984640-3984659 | None:intergenic | 30.0% | |
| TTAAACAATCTTAGTACCAC+AGG | - | chr8_4:3984641-3984660 | None:intergenic | 30.0% | |
| ! | TTCAAAGTGTTCTTAGTAAC+GGG | + | chr8_4:3984680-3984699 | Msa1307930:CDS | 30.0% |
| ATTACCTTAAAATAAGGCGT+TGG | - | chr8_4:3984772-3984791 | None:intergenic | 30.0% | |
| ACAAAAACTGTTGTACCAAA+AGG | - | chr8_4:3984843-3984862 | None:intergenic | 30.0% | |
| GACAATGCATAATTTATGCA+AGG | - | chr8_4:3985170-3985189 | None:intergenic | 30.0% | |
| CAGAACAATAATAATCTCCA+TGG | + | chr8_4:3985331-3985350 | Msa1307930:intron | 30.0% | |
| !! | TTTGAAAGCCGATTTTAGTA+TGG | + | chr8_4:3985381-3985400 | Msa1307930:intron | 30.0% |
| ATATTAGACATTGGATTTGG+AGG | - | chr8_4:3985458-3985477 | None:intergenic | 30.0% | |
| GACATATTAGACATTGGATT+TGG | - | chr8_4:3985461-3985480 | None:intergenic | 30.0% | |
| !! | GTATATTTAATTGACTTGGC+CGG | + | chr8_4:3985752-3985771 | Msa1307930:intron | 30.0% |
| !! | TTTGTTGGAAGTTGATATGT+AGG | + | chr8_4:3985775-3985794 | Msa1307930:intron | 30.0% |
| !! | TTGTTGGAAGTTGATATGTA+GGG | + | chr8_4:3985776-3985795 | Msa1307930:intron | 30.0% |
| ! | AATGCTAATGCTTTTGACAA+TGG | - | chr8_4:3985830-3985849 | None:intergenic | 30.0% |
| ! | TCTAATTTTATTACGGCTAG+TGG | + | chr8_4:3985864-3985883 | Msa1307930:intron | 30.0% |
| !!! | TTTTTTGTATTGGACGACTT+CGG | + | chr8_4:3985968-3985987 | Msa1307930:intron | 30.0% |
| ACTAACGAGTGAAATTAACA+AGG | - | chr8_4:3986014-3986033 | None:intergenic | 30.0% | |
| TTTCACTAAGTGAAGGAATT+TGG | - | chr8_4:3986070-3986089 | None:intergenic | 30.0% | |
| !!! | TTTATTTTATTTGAGGGGAG+GGG | - | chr8_4:3986126-3986145 | None:intergenic | 30.0% |
| !!! | GTTTTATTTTATTTGAGGGG+AGG | - | chr8_4:3986128-3986147 | None:intergenic | 30.0% |
| ACTAAAAAAATGCGTAATGG+AGG | + | chr8_4:3986229-3986248 | Msa1307930:intron | 30.0% | |
| ! | TTTTCACGTCAAAAACAAGA+AGG | + | chr8_4:3986274-3986293 | Msa1307930:intron | 30.0% |
| ! | TCAATTAACTTTGAGGGAAA+AGG | + | chr8_4:3986684-3986703 | Msa1307930:intron | 30.0% |
| ATTAATTGAGTACTCGTTCT+TGG | + | chr8_4:3986711-3986730 | Msa1307930:intron | 30.0% | |
| TTAATTGAGTACTCGTTCTT+GGG | + | chr8_4:3986712-3986731 | Msa1307930:intron | 30.0% | |
| AATTAACAATAAAGGGGGAA+AGG | + | chr8_4:3986761-3986780 | Msa1307930:intron | 30.0% | |
| AAGACGAAAAGTAAATGAAG+AGG | - | chr8_4:3986954-3986973 | None:intergenic | 30.0% | |
| !! | TCTTCATTTACTTTTCGTCT+TGG | + | chr8_4:3986953-3986972 | Msa1307930:intron | 30.0% |
| TGAACATCTTACATTGGTAT+TGG | - | chr8_4:3986995-3987014 | None:intergenic | 30.0% | |
| CATTGATGAACATCTTACAT+TGG | - | chr8_4:3987001-3987020 | None:intergenic | 30.0% | |
| ! | AATGAAGTGTGCTGATAAAA+TGG | + | chr8_4:3987398-3987417 | Msa1307930:intron | 30.0% |
| TTGATTAATGATGGTTGTGA+AGG | + | chr8_4:3987450-3987469 | Msa1307930:intron | 30.0% | |
| ! | TGAAATACAAGTCATCGATT+CGG | + | chr8_4:3987534-3987553 | Msa1307930:CDS | 30.0% |
| TATAGAATATGGGGAAATGT+AGG | + | chr8_4:3987578-3987597 | Msa1307930:CDS | 30.0% | |
| AATCAAGAAATGCAGTACAT+AGG | - | chr8_4:3987665-3987684 | None:intergenic | 30.0% | |
| !! | AATTTGTTGGCAATGGCATT+AGG | - | chr8_4:3983895-3983914 | None:intergenic | 35.0% |
| AAATGTGTCCGAGAATTTGT+TGG | - | chr8_4:3983908-3983927 | None:intergenic | 35.0% | |
| !! | TTGATGATGATGAGAGGTAT+GGG | + | chr8_4:3984199-3984218 | Msa1307930:CDS | 35.0% |
| GTTGAGAATTACATGATTGG+TGG | + | chr8_4:3984300-3984319 | Msa1307930:CDS | 35.0% | |
| TGAGTAGTAGAAGTAGAAAG+AGG | - | chr8_4:3984387-3984406 | None:intergenic | 35.0% | |
| ! | TCATCAAGATGCTTGGATTT+TGG | + | chr8_4:3984404-3984423 | Msa1307930:CDS | 35.0% |
| ! | TTCAAGGCATGGATTAATCA+AGG | + | chr8_4:3984599-3984618 | Msa1307930:CDS | 35.0% |
| AACACTTGCCAAAATCACTA+CGG | + | chr8_4:3984715-3984734 | Msa1307930:CDS | 35.0% | |
| ! | CAAATTGTCCGTAGTGATTT+TGG | - | chr8_4:3984726-3984745 | None:intergenic | 35.0% |
| TTGCATAACCAAGGATTCAT+CGG | + | chr8_4:3984743-3984762 | Msa1307930:CDS | 35.0% | |
| ! | ATAATTAGCTAGCGACCTTT+TGG | + | chr8_4:3984825-3984844 | Msa1307930:intron | 35.0% |
| TTTGTGATATAAGCCTCGTT+AGG | + | chr8_4:3984858-3984877 | Msa1307930:intron | 35.0% | |
| ATGACAAAATATACACCCTC+CGG | + | chr8_4:3984918-3984937 | Msa1307930:intron | 35.0% | |
| AAAACATGTGGCGTAATTGA+TGG | + | chr8_4:3985358-3985377 | Msa1307930:intron | 35.0% | |
| TCCAATGTCTAATATGTCGA+CGG | + | chr8_4:3985463-3985482 | Msa1307930:intron | 35.0% | |
| CATATCAACTTCCAACAAAC+CGG | - | chr8_4:3985774-3985793 | None:intergenic | 35.0% | |
| ACAAGACAACATTGCATTGT+TGG | - | chr8_4:3985906-3985925 | None:intergenic | 35.0% | |
| AATGTTGTCTTGTCATGAGA+AGG | + | chr8_4:3985913-3985932 | Msa1307930:intron | 35.0% | |
| ! | TAAGTGAAGGAATTTGGAGT+TGG | - | chr8_4:3986064-3986083 | None:intergenic | 35.0% |
| AACTCTCTTTCACTAAGTGA+AGG | - | chr8_4:3986077-3986096 | None:intergenic | 35.0% | |
| TATGTATGTTGTCCAAGTCA+AGG | + | chr8_4:3986892-3986911 | Msa1307930:intron | 35.0% | |
| ! | TTTGCATTGATACCTTGACT+TGG | - | chr8_4:3986907-3986926 | None:intergenic | 35.0% |
| CACAATTAAACATTGCGAGT+TGG | - | chr8_4:3987144-3987163 | None:intergenic | 35.0% | |
| ! | GTGTGCTGATAAAATGGATT+AGG | + | chr8_4:3987404-3987423 | Msa1307930:intron | 35.0% |
| ! | AAGAGGAAGGGTATAGAATA+TGG | + | chr8_4:3987567-3987586 | Msa1307930:CDS | 35.0% |
| ! | AGAGGAAGGGTATAGAATAT+GGG | + | chr8_4:3987568-3987587 | Msa1307930:CDS | 35.0% |
| AAATGCAGTACATAGGATTG+GGG | - | chr8_4:3987658-3987677 | None:intergenic | 35.0% | |
| GAAATGCAGTACATAGGATT+GGG | - | chr8_4:3987659-3987678 | None:intergenic | 35.0% | |
| AGAAATGCAGTACATAGGAT+TGG | - | chr8_4:3987660-3987679 | None:intergenic | 35.0% | |
| TTTGTTGAGTACTACACAAG+TGG | - | chr8_4:3987705-3987724 | None:intergenic | 35.0% | |
| !!! | CTACGGTTGCTTTTCTTACA+TGG | - | chr8_4:3983807-3983826 | None:intergenic | 40.0% |
| TGCCATTGCCAACAAATTCT+CGG | + | chr8_4:3983897-3983916 | Msa1307930:five_prime_UTR | 40.0% | |
| ! | GATATTGCAAGCAGTATTGG+CGG | + | chr8_4:3984023-3984042 | Msa1307930:CDS | 40.0% |
| !! | ATATTGCAAGCAGTATTGGC+GGG | + | chr8_4:3984024-3984043 | Msa1307930:CDS | 40.0% |
| !!! | GTTTTTGCTTCTGAGGCTTT+TGG | - | chr8_4:3984107-3984126 | None:intergenic | 40.0% |
| ! | TGAAGCAGTTTTTGCTTCTG+AGG | - | chr8_4:3984114-3984133 | None:intergenic | 40.0% |
| TTCTTCTTCTTCTTCGTCGT+CGG | + | chr8_4:3984164-3984183 | Msa1307930:CDS | 40.0% | |
| !! | GTTGATGATGATGAGAGGTA+TGG | + | chr8_4:3984198-3984217 | Msa1307930:CDS | 40.0% |
| CAAACAATAATGTGCGTCCT+TGG | + | chr8_4:3984247-3984266 | Msa1307930:CDS | 40.0% | |
| ACACAATTTCATCCACGATG+AGG | - | chr8_4:3984347-3984366 | None:intergenic | 40.0% | |
| CTACTACTCATCAAGATGCT+TGG | + | chr8_4:3984397-3984416 | Msa1307930:CDS | 40.0% | |
| TGAACATCGCCGAATCAAAT+GGG | - | chr8_4:3984583-3984602 | None:intergenic | 40.0% | |
| TTGAACATCGCCGAATCAAA+TGG | - | chr8_4:3984584-3984603 | None:intergenic | 40.0% | |
| !! | ATTTGATTCGGCGATGTTCA+AGG | + | chr8_4:3984583-3984602 | Msa1307930:CDS | 40.0% |
| !! | TTAGTAACGGGTAGATACGA+AGG | + | chr8_4:3984692-3984711 | Msa1307930:CDS | 40.0% |
| ACGGACAATTTGCATAACCA+AGG | + | chr8_4:3984734-3984753 | Msa1307930:CDS | 40.0% | |
| !!! | GCTACCAACGCCTTATTTTA+AGG | + | chr8_4:3984765-3984784 | Msa1307930:CDS | 40.0% |
| GATATAAGCCTCGTTAGGTT+AGG | + | chr8_4:3984863-3984882 | Msa1307930:intron | 40.0% | |
| TTGTCATGAAAACGTTCCCT+AGG | - | chr8_4:3984905-3984924 | None:intergenic | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | - | chr8_4:3985053-3985072 | None:intergenic | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | - | chr8_4:3985052-3985071 | None:intergenic | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | + | chr8_4:3985052-3985071 | Msa1307930:intron | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | + | chr8_4:3985053-3985072 | Msa1307930:intron | 40.0% | |
| GTGCTAAATTATACACCCTC+CGG | - | chr8_4:3985071-3985090 | None:intergenic | 40.0% | |
| TGTATAATTTAGCACGCGCT+AGG | + | chr8_4:3985076-3985095 | Msa1307930:intron | 40.0% | |
| ! | TGAGCTTATCTCAGTTGGTA+AGG | - | chr8_4:3985192-3985211 | None:intergenic | 40.0% |
| TACCAACTGAGATAAGCTCA+CGG | + | chr8_4:3985192-3985211 | Msa1307930:intron | 40.0% | |
| CCAATGTCTAATATGTCGAC+GGG | + | chr8_4:3985464-3985483 | Msa1307930:intron | 40.0% | |
| ! | TTATTACGGCTAGTGGATAC+AGG | + | chr8_4:3985871-3985890 | Msa1307930:intron | 40.0% |
| AGACAACATTGCATTGTTGG+AGG | - | chr8_4:3985903-3985922 | None:intergenic | 40.0% | |
| GCGGAGAAACTTAGAAAATG+TGG | + | chr8_4:3986202-3986221 | Msa1307930:intron | 40.0% | |
| GTAAGCAAGCATGCCAAATT+TGG | - | chr8_4:3986871-3986890 | None:intergenic | 40.0% | |
| !! | ATACAAGTCATCGATTCGGA+AGG | + | chr8_4:3987538-3987557 | Msa1307930:CDS | 40.0% |
| ! | GAGGAAGGGTATAGAATATG+GGG | + | chr8_4:3987569-3987588 | Msa1307930:CDS | 40.0% |
| !! | GTCCGAGAATTTGTTGGCAA+TGG | - | chr8_4:3983902-3983921 | None:intergenic | 45.0% |
| !! | TATTGCAAGCAGTATTGGCG+GGG | + | chr8_4:3984025-3984044 | Msa1307930:CDS | 45.0% |
| ! | GCGGGGTTAACGTTTTTGTT+GGG | + | chr8_4:3984042-3984061 | Msa1307930:CDS | 45.0% |
| ! | CGGGGTTAACGTTTTTGTTG+GGG | + | chr8_4:3984043-3984062 | Msa1307930:CDS | 45.0% |
| !! | TGGTGGTTGATGATGATGAG+AGG | + | chr8_4:3984193-3984212 | Msa1307930:CDS | 45.0% |
| CATGCTTGTAGCAACGAAGT+GGG | - | chr8_4:3984281-3984300 | None:intergenic | 45.0% | |
| ACATGCTTGTAGCAACGAAG+TGG | - | chr8_4:3984282-3984301 | None:intergenic | 45.0% | |
| ! | AGATGCTTGGATTTTGGACG+TGG | + | chr8_4:3984410-3984429 | Msa1307930:CDS | 45.0% |
| CAGATGCGACCCATTTGATT+CGG | + | chr8_4:3984571-3984590 | Msa1307930:intron | 45.0% | |
| TTAGTACCACAGGGTTTGCA+GGG | - | chr8_4:3984631-3984650 | None:intergenic | 45.0% | |
| ATAAGCCTCGTTAGGTTAGG+TGG | + | chr8_4:3984866-3984885 | Msa1307930:intron | 45.0% | |
| ACTATCCACCTAACCTAACG+AGG | - | chr8_4:3984874-3984893 | None:intergenic | 45.0% | |
| TGGATAGTGACTGCTACCTA+GGG | + | chr8_4:3984886-3984905 | Msa1307930:intron | 45.0% | |
| ACCAACTGAGATAAGCTCAC+GGG | + | chr8_4:3985193-3985212 | Msa1307930:intron | 45.0% | |
| CTCCATGGAGACAAAACATG+TGG | + | chr8_4:3985346-3985365 | Msa1307930:intron | 45.0% | |
| AGACATTGGATTTGGAGGAG+TGG | - | chr8_4:3985453-3985472 | None:intergenic | 45.0% | |
| CCCGTCGACATATTAGACAT+TGG | - | chr8_4:3985467-3985486 | None:intergenic | 45.0% | |
| !! | AATTGACTTGGCCGGTTTGT+TGG | + | chr8_4:3985760-3985779 | Msa1307930:intron | 45.0% |
| CTCACTGAGCACTCTTAATG+CGG | + | chr8_4:3986183-3986202 | Msa1307930:intron | 45.0% | |
| ! | TGCGTAATGGAGGAACTTCA+TGG | + | chr8_4:3986239-3986258 | Msa1307930:intron | 45.0% |
| GCTGCTGACAATGCCAAATT+TGG | + | chr8_4:3986855-3986874 | Msa1307930:intron | 45.0% | |
| ! | GGCAGGAGTGTGAAATACAA+AGG | + | chr8_4:3987500-3987519 | Msa1307930:intron | 45.0% |
| GATTCGGAAGGAGATTGAAG+AGG | + | chr8_4:3987550-3987569 | Msa1307930:CDS | 45.0% | |
| GGAAGGAGATTGAAGAGGAA+GGG | + | chr8_4:3987555-3987574 | Msa1307930:CDS | 45.0% | |
| !!! | TTTTATTTATTTTAAAGATT+TGG | - | chr8_4:3985711-3985730 | None:intergenic | 5.0% |
| ! | GGCGGGGTTAACGTTTTTGT+TGG | + | chr8_4:3984041-3984060 | Msa1307930:CDS | 50.0% |
| TTCTTCGTCGTCGGAGATGA+TGG | + | chr8_4:3984173-3984192 | Msa1307930:CDS | 50.0% | |
| GCATGACATGAACCTCATCG+TGG | + | chr8_4:3984332-3984351 | Msa1307930:CDS | 50.0% | |
| ATTCGGCGATGTTCAAGGCA+TGG | + | chr8_4:3984588-3984607 | Msa1307930:CDS | 50.0% | |
| CTTAGTACCACAGGGTTTGC+AGG | - | chr8_4:3984632-3984651 | None:intergenic | 50.0% | |
| !! | GTTGGTAGCCGATGAATCCT+TGG | - | chr8_4:3984754-3984773 | None:intergenic | 50.0% |
| GTGGATAGTGACTGCTACCT+AGG | + | chr8_4:3984885-3984904 | Msa1307930:intron | 50.0% | |
| TCCCGTGAGCTTATCTCAGT+TGG | - | chr8_4:3985197-3985216 | None:intergenic | 50.0% | |
| ! | CGCCACATGTTTTGTCTCCA+TGG | - | chr8_4:3985351-3985370 | None:intergenic | 50.0% |
| ! | GGGGAAAGGCACAATAGACT+TGG | + | chr8_4:3986775-3986794 | Msa1307930:intron | 50.0% |
| CGGAAGGAGATTGAAGAGGA+AGG | + | chr8_4:3987554-3987573 | Msa1307930:CDS | 50.0% | |
| !! | ACCAGTGGACTGATCTCCAA+GGG | + | chr8_4:3987603-3987622 | Msa1307930:CDS | 50.0% |
| !! | TGATCTCCAAGGGGAGTGTT+TGG | + | chr8_4:3987613-3987632 | Msa1307930:CDS | 50.0% |
| !! | GATCTCCAAGGGGAGTGTTT+GGG | + | chr8_4:3987614-3987633 | Msa1307930:CDS | 50.0% |
| ! | TTCGTCGTCGGAGATGATGG+TGG | + | chr8_4:3984176-3984195 | Msa1307930:CDS | 55.0% |
| ! | ATGAGAGGTATGGGCTGAGC+TGG | + | chr8_4:3984208-3984227 | Msa1307930:CDS | 55.0% |
| CGAAGTGGGACTGTCTTCCA+AGG | - | chr8_4:3984267-3984286 | None:intergenic | 55.0% | |
| AATGTGCCCTGCAAACCCTG+TGG | + | chr8_4:3984622-3984641 | Msa1307930:CDS | 55.0% | |
| GATAAGCTCACGGGAACACC+AGG | + | chr8_4:3985202-3985221 | Msa1307930:intron | 55.0% | |
| GGGGAAATGTAGGAGACCAG+TGG | + | chr8_4:3987588-3987607 | Msa1307930:CDS | 55.0% | |
| !! | GACCAGTGGACTGATCTCCA+AGG | + | chr8_4:3987602-3987621 | Msa1307930:CDS | 55.0% |
| !! | CCAGTGGACTGATCTCCAAG+GGG | + | chr8_4:3987604-3987623 | Msa1307930:CDS | 55.0% |
| GATTGCCCAAACACTCCCCT+TGG | - | chr8_4:3987622-3987641 | None:intergenic | 55.0% | |
| ! | AGAGGTATGGGCTGAGCTGG+AGG | + | chr8_4:3984211-3984230 | Msa1307930:CDS | 60.0% |
| ! | GTATGGGCTGAGCTGGAGGT+TGG | + | chr8_4:3984215-3984234 | Msa1307930:CDS | 60.0% |
| GCTGAGCTGGAGGTTGGCAA+TGG | + | chr8_4:3984221-3984240 | Msa1307930:CDS | 60.0% | |
| CCCCTTGGAGATCAGTCCAC+TGG | - | chr8_4:3987607-3987626 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 3983792 | 3987767 | 3983792 | ID=Msa1307930;Name=Msa1307930 |
| chr8_4 | mRNA | 3983792 | 3987767 | 3983792 | ID=Msa1307930-mRNA-1;Parent=Msa1307930;Name=Msa1307930-mRNA-1;_AED=0.11;_eAED=0.11;_QI=214|1|1|1|1|1|3|85|288 |
| chr8_4 | exon | 3983792 | 3984481 | 3983792 | ID=Msa1307930-mRNA-1:exon:1128;Parent=Msa1307930-mRNA-1 |
| chr8_4 | exon | 3984574 | 3984786 | 3984574 | ID=Msa1307930-mRNA-1:exon:1129;Parent=Msa1307930-mRNA-1 |
| chr8_4 | exon | 3987505 | 3987767 | 3987505 | ID=Msa1307930-mRNA-1:exon:1130;Parent=Msa1307930-mRNA-1 |
| chr8_4 | five_prime_UTR | 3983792 | 3984005 | 3983792 | ID=Msa1307930-mRNA-1:five_prime_utr;Parent=Msa1307930-mRNA-1 |
| chr8_4 | CDS | 3984006 | 3984481 | 3984006 | ID=Msa1307930-mRNA-1:cds;Parent=Msa1307930-mRNA-1 |
| chr8_4 | CDS | 3984574 | 3984786 | 3984574 | ID=Msa1307930-mRNA-1:cds;Parent=Msa1307930-mRNA-1 |
| chr8_4 | CDS | 3987505 | 3987682 | 3987505 | ID=Msa1307930-mRNA-1:cds;Parent=Msa1307930-mRNA-1 |
| chr8_4 | three_prime_UTR | 3987683 | 3987767 | 3987683 | ID=Msa1307930-mRNA-1:three_prime_utr;Parent=Msa1307930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
