Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013322.t1 | XP_003613143.1 | 88.1 | 319 | 38 | 0 | 1 | 319 | 64 | 382 | 1.30E-159 | 572.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013322.t1 | Q9FVQ0 | 52.4 | 315 | 150 | 0 | 1 | 315 | 63 | 377 | 3.3e-95 | 349.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013322.t1 | G7JYZ1 | 88.1 | 319 | 38 | 0 | 1 | 319 | 64 | 382 | 9.5e-160 | 572.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24021 | MS.gene013322 | PPI |
| MS.gene059027 | MS.gene013322 | PPI |
| MS.gene018590 | MS.gene013322 | PPI |
| MS.gene013322 | MS.gene60245 | PPI |
| MS.gene23537 | MS.gene013322 | PPI |
| MS.gene31616 | MS.gene013322 | PPI |
| MS.gene51580 | MS.gene013322 | PPI |
| MS.gene015953 | MS.gene013322 | PPI |
| MS.gene94810 | MS.gene013322 | PPI |
| MS.gene64265 | MS.gene013322 | PPI |
| MS.gene013322 | MS.gene064951 | PPI |
| MS.gene09884 | MS.gene013322 | PPI |
| MS.gene013322 | MS.gene32792 | PPI |
| MS.gene031178 | MS.gene013322 | PPI |
| MS.gene013322 | MS.gene059136 | PPI |
| MS.gene013322 | MS.gene40340 | PPI |
| MS.gene013322 | MS.gene021474 | PPI |
| MS.gene013322 | MS.gene53594 | PPI |
| MS.gene013322 | MS.gene038029 | PPI |
| MS.gene013322 | MS.gene014685 | PPI |
| MS.gene013322 | MS.gene061851 | PPI |
| MS.gene56048 | MS.gene013322 | PPI |
| MS.gene61665 | MS.gene013322 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013322.t1 | MTR_5g033260 | 88.088 | 319 | 38 | 0 | 1 | 319 | 64 | 382 | 0.0 | 577 |
| MS.gene013322.t1 | MTR_8g432640 | 83.072 | 319 | 54 | 0 | 1 | 319 | 64 | 382 | 0.0 | 560 |
| MS.gene013322.t1 | MTR_7g107690 | 47.937 | 315 | 164 | 0 | 2 | 316 | 67 | 381 | 1.36e-111 | 329 |
| MS.gene013322.t1 | MTR_3g088925 | 48.265 | 317 | 162 | 2 | 1 | 316 | 65 | 380 | 6.19e-108 | 320 |
| MS.gene013322.t1 | MTR_7g107710 | 48.589 | 319 | 162 | 2 | 1 | 318 | 64 | 381 | 7.09e-107 | 317 |
| MS.gene013322.t1 | MTR_3g088945 | 47.634 | 317 | 164 | 2 | 1 | 316 | 65 | 380 | 1.94e-106 | 316 |
| MS.gene013322.t1 | MTR_4g051642 | 49.527 | 317 | 157 | 3 | 1 | 316 | 65 | 379 | 3.49e-106 | 315 |
| MS.gene013322.t1 | MTR_3g088955 | 47.003 | 317 | 166 | 2 | 1 | 316 | 65 | 380 | 2.37e-104 | 311 |
| MS.gene013322.t1 | MTR_3g109520 | 44.375 | 320 | 172 | 2 | 1 | 315 | 97 | 415 | 1.22e-93 | 284 |
| MS.gene013322.t1 | MTR_1g008380 | 42.947 | 319 | 175 | 3 | 1 | 314 | 100 | 416 | 2.69e-90 | 276 |
| MS.gene013322.t1 | MTR_1g069275 | 45.625 | 320 | 164 | 5 | 1 | 314 | 83 | 398 | 7.02e-90 | 275 |
| MS.gene013322.t1 | MTR_1g046230 | 44.860 | 321 | 168 | 5 | 1 | 314 | 82 | 400 | 2.91e-88 | 271 |
| MS.gene013322.t1 | MTR_6g086870 | 42.724 | 323 | 174 | 4 | 1 | 314 | 78 | 398 | 4.52e-87 | 267 |
| MS.gene013322.t1 | MTR_7g099330 | 45.000 | 320 | 162 | 5 | 1 | 314 | 82 | 393 | 9.18e-87 | 266 |
| MS.gene013322.t1 | MTR_1g011630 | 43.849 | 317 | 167 | 5 | 1 | 312 | 74 | 384 | 1.45e-86 | 266 |
| MS.gene013322.t1 | MTR_7g099160 | 44.918 | 305 | 154 | 5 | 15 | 313 | 217 | 513 | 6.89e-81 | 255 |
| MS.gene013322.t1 | MTR_3g096030 | 86.607 | 112 | 15 | 0 | 8 | 119 | 47 | 158 | 2.20e-65 | 203 |
| MS.gene013322.t1 | MTR_3g096020 | 61.947 | 113 | 5 | 3 | 149 | 260 | 1 | 76 | 9.41e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013322.t1 | AT1G48910 | 52.381 | 315 | 150 | 0 | 1 | 315 | 63 | 377 | 5.65e-120 | 350 |
| MS.gene013322.t1 | AT1G21430 | 48.580 | 317 | 158 | 4 | 1 | 315 | 67 | 380 | 4.29e-101 | 302 |
| MS.gene013322.t1 | AT1G04610 | 46.226 | 318 | 161 | 5 | 2 | 311 | 96 | 411 | 3.49e-95 | 289 |
| MS.gene013322.t1 | AT5G25620 | 45.171 | 321 | 166 | 5 | 1 | 314 | 90 | 407 | 6.20e-93 | 282 |
| MS.gene013322.t1 | AT5G25620 | 45.171 | 321 | 166 | 5 | 1 | 314 | 90 | 407 | 1.00e-92 | 282 |
| MS.gene013322.t1 | AT5G11320 | 43.849 | 317 | 165 | 4 | 1 | 312 | 75 | 383 | 1.97e-87 | 268 |
| MS.gene013322.t1 | AT5G43890 | 44.654 | 318 | 167 | 5 | 1 | 311 | 83 | 398 | 4.11e-87 | 268 |
| MS.gene013322.t1 | AT4G13260 | 42.902 | 317 | 175 | 2 | 1 | 312 | 86 | 401 | 8.03e-87 | 266 |
| MS.gene013322.t1 | AT1G04180 | 43.218 | 317 | 170 | 5 | 1 | 311 | 83 | 395 | 5.16e-86 | 265 |
| MS.gene013322.t1 | AT4G32540 | 43.730 | 311 | 162 | 5 | 8 | 311 | 86 | 390 | 6.59e-86 | 264 |
| MS.gene013322.t1 | AT4G32540 | 43.548 | 310 | 162 | 5 | 8 | 311 | 86 | 388 | 8.42e-86 | 264 |
| MS.gene013322.t1 | AT4G28720 | 42.813 | 327 | 177 | 6 | 1 | 319 | 83 | 407 | 2.67e-85 | 263 |
| MS.gene013322.t1 | AT2G33230 | 43.260 | 319 | 170 | 5 | 1 | 311 | 90 | 405 | 9.34e-82 | 254 |
| MS.gene013322.t1 | AT4G13260 | 41.724 | 290 | 163 | 2 | 27 | 311 | 9 | 297 | 7.59e-74 | 230 |
| MS.gene013322.t1 | AT5G11320 | 43.233 | 266 | 139 | 3 | 1 | 261 | 75 | 333 | 2.41e-69 | 220 |
| MS.gene013322.t1 | AT4G13260 | 44.444 | 225 | 120 | 1 | 1 | 220 | 86 | 310 | 5.13e-63 | 202 |
Find 78 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTATGATCTCTATAAT+TGG | 0.192502 | 3.4:-87072356 | MS.gene013322:CDS |
| CGGTATTTATCGTCCCAAAT+TGG | 0.220274 | 3.4:-87070706 | MS.gene013322:CDS |
| AATTATGCAGATTAAGAGTT+TGG | 0.267840 | 3.4:+87069848 | None:intergenic |
| GTATTGAAGGAATTGGTCTT+TGG | 0.306079 | 3.4:+87072689 | None:intergenic |
| AGGTAGGTTGGGCCTGAGGG+TGG | 0.310193 | 3.4:+87072714 | None:intergenic |
| TGCTTATGATCTCTATAATT+GGG | 0.311048 | 3.4:-87072355 | MS.gene013322:CDS |
| ATATGAATCAAAAGAGGTTT+TGG | 0.328118 | 3.4:-87072409 | MS.gene013322:CDS |
| GAGTTGTAAAGGTCCCAATT+TGG | 0.331158 | 3.4:+87070692 | None:intergenic |
| AGTTGTAAAGGTCCCAATTT+GGG | 0.358601 | 3.4:+87070693 | None:intergenic |
| TGTCTATGTATTGAAGGAAT+TGG | 0.360875 | 3.4:+87072682 | None:intergenic |
| CACTCAAAATACTACAAATC+TGG | 0.376434 | 3.4:-87072438 | MS.gene013322:CDS |
| GTTGGGCCTGAGGGTGGGTG+AGG | 0.384881 | 3.4:+87072720 | None:intergenic |
| TTATCCAGTCCAGGCACATT+AGG | 0.388569 | 3.4:+87072480 | None:intergenic |
| AATTAAAGAGGGATCTATAA+AGG | 0.391104 | 3.4:-87070619 | MS.gene013322:intron |
| GTCTATTGTCGTTCGAAGTC+CGG | 0.391484 | 3.4:-87072322 | MS.gene013322:intron |
| GGTATTTATCGTCCCAAATT+GGG | 0.412423 | 3.4:-87070705 | MS.gene013322:CDS |
| CATATTTGTCTATGTATTGA+AGG | 0.420134 | 3.4:+87072676 | None:intergenic |
| GGTCTTTGGATAGGTAGGTT+GGG | 0.424128 | 3.4:+87072703 | None:intergenic |
| CATAGCTAATGGGTGGCTTA+AGG | 0.427269 | 3.4:-87070195 | MS.gene013322:intron |
| CTCATGCCTCACCCACCCTC+AGG | 0.439321 | 3.4:-87072726 | MS.gene013322:CDS |
| GGGACGATAAATACCGTACT+TGG | 0.439663 | 3.4:+87070713 | None:intergenic |
| AGGAACATTGGAAGTTTATG+AGG | 0.446242 | 3.4:-87072550 | MS.gene013322:CDS |
| ACTAGCAAGGAGAGGCTTGT+GGG | 0.449924 | 3.4:-87069911 | MS.gene013322:CDS |
| GGATACAAAAGCATAGCTAA+TGG | 0.454759 | 3.4:-87070206 | MS.gene013322:CDS |
| TGGTCTTTGGATAGGTAGGT+TGG | 0.458799 | 3.4:+87072702 | None:intergenic |
| GCGAATGGTGAATTATTTGC+CGG | 0.460895 | 3.4:-87070793 | MS.gene013322:CDS |
| TATTCCTAATGTGCCTGGAC+TGG | 0.461163 | 3.4:-87072484 | MS.gene013322:CDS |
| GAATTGGTCTTTGGATAGGT+AGG | 0.465992 | 3.4:+87072698 | None:intergenic |
| GGATAGGTAGGTTGGGCCTG+AGG | 0.466487 | 3.4:+87072710 | None:intergenic |
| ATGATGAAGTTAGAGACAAA+TGG | 0.467665 | 3.4:-87072599 | MS.gene013322:CDS |
| AAATATGCTCTCAATGAGAA+AGG | 0.471673 | 3.4:-87069994 | MS.gene013322:CDS |
| GATACAAAAGCATAGCTAAT+GGG | 0.472114 | 3.4:-87070205 | MS.gene013322:CDS |
| GGTTATATTCCTAATGTGCC+TGG | 0.488785 | 3.4:-87072489 | MS.gene013322:CDS |
| GATAGGTAGGTTGGGCCTGA+GGG | 0.490086 | 3.4:+87072711 | None:intergenic |
| ATAGCATCTACAACATCAAC+CGG | 0.490257 | 3.4:+87070774 | None:intergenic |
| AAGCTTCTTGTGGTCGCCAC+CGG | 0.491235 | 3.4:-87072525 | MS.gene013322:CDS |
| GATGCAATCGTATTCGCGAC+TGG | 0.499555 | 3.4:-87070227 | MS.gene013322:CDS |
| GGTAGGTTGGGCCTGAGGGT+GGG | 0.501182 | 3.4:+87072715 | None:intergenic |
| AGGCTTGTGGGGAGTCAAGA+TGG | 0.506541 | 3.4:-87069899 | MS.gene013322:CDS |
| GAAGGAATTGGTCTTTGGAT+AGG | 0.509607 | 3.4:+87072694 | None:intergenic |
| AAGTCTGCAGTTATTGATGT+TGG | 0.511414 | 3.4:-87070654 | MS.gene013322:CDS |
| AATATGCTCTCAATGAGAAA+GGG | 0.511763 | 3.4:-87069993 | MS.gene013322:CDS |
| AAAATGCTTACCCGAGCCAT+TGG | 0.511789 | 3.4:-87069963 | MS.gene013322:CDS |
| CCTGGACTGGATAACTTTGA+AGG | 0.516577 | 3.4:-87072471 | MS.gene013322:CDS |
| GTCACGTTCTTGAGTTGTAA+AGG | 0.520118 | 3.4:+87070681 | None:intergenic |
| TTCAAAATATGAATCAAAAG+AGG | 0.525909 | 3.4:-87072415 | MS.gene013322:CDS |
| TCAATTCTCGTAATATCTGA+AGG | 0.531023 | 3.4:+87070293 | None:intergenic |
| GAAACAAAGAACACTAAAGA+AGG | 0.532498 | 3.4:-87072570 | MS.gene013322:CDS |
| TTACAACTCAAGAACGTGAC+AGG | 0.534326 | 3.4:-87070678 | MS.gene013322:CDS |
| TGCTTACCCGAGCCATTGGA+AGG | 0.540363 | 3.4:-87069959 | MS.gene013322:CDS |
| TACGGTGATCTGTCCAAGTA+CGG | 0.541244 | 3.4:-87070726 | MS.gene013322:CDS |
| CCTTCAAAGTTATCCAGTCC+AGG | 0.541905 | 3.4:+87072471 | None:intergenic |
| GAACACTAAAGAAGGAACAT+TGG | 0.544778 | 3.4:-87072562 | MS.gene013322:CDS |
| GACTAGCAAGGAGAGGCTTG+TGG | 0.559365 | 3.4:-87069912 | MS.gene013322:CDS |
| GCTTATGATCTCTATAATTG+GGG | 0.559964 | 3.4:-87072354 | MS.gene013322:CDS |
| CTTACCCGAGCCATTGGAAG+GGG | 0.560574 | 3.4:-87069957 | MS.gene013322:CDS |
| GGACTTCGAACGACAATAGA+CGG | 0.563490 | 3.4:+87072324 | None:intergenic |
| GATCATGGATTATACTGCGC+AGG | 0.573202 | 3.4:-87069934 | MS.gene013322:CDS |
| TGGGAGTGGTAACTCAGGAA+TGG | 0.579719 | 3.4:-87072382 | MS.gene013322:CDS |
| AATAGAGAAATGATTCGTCA+AGG | 0.580272 | 3.4:-87070819 | MS.gene013322:CDS |
| TTATGAGGCAAAGCTTCTTG+TGG | 0.587741 | 3.4:-87072535 | MS.gene013322:CDS |
| CTAGCAAGGAGAGGCTTGTG+GGG | 0.590569 | 3.4:-87069910 | MS.gene013322:CDS |
| ATAGAGAAATGATTCGTCAA+GGG | 0.595594 | 3.4:-87070818 | MS.gene013322:CDS |
| GCTTACCCGAGCCATTGGAA+GGG | 0.611153 | 3.4:-87069958 | MS.gene013322:CDS |
| GTAGTTGGGAGTGGTAACTC+AGG | 0.620564 | 3.4:-87072387 | MS.gene013322:CDS |
| TATACTGCGCAGGACTAGCA+AGG | 0.623691 | 3.4:-87069924 | MS.gene013322:CDS |
| AGTTGTATTTGGAAACAACA+TGG | 0.629375 | 3.4:-87070261 | MS.gene013322:CDS |
| ACTGGATAACTTTGAAGGAG+AGG | 0.632240 | 3.4:-87072466 | MS.gene013322:CDS |
| GACTTCGAACGACAATAGAC+GGG | 0.636542 | 3.4:+87072325 | None:intergenic |
| GGATAACTTTGAAGGAGAGG+TGG | 0.646286 | 3.4:-87072463 | MS.gene013322:CDS |
| ATGAAGTTAGAGACAAATGG+AGG | 0.649410 | 3.4:-87072596 | MS.gene013322:CDS |
| TGCGCAGGACTAGCAAGGAG+AGG | 0.654870 | 3.4:-87069919 | MS.gene013322:CDS |
| GGATGCAGAGTCAATTGCAG+AGG | 0.658304 | 3.4:-87069878 | MS.gene013322:CDS |
| GCCACCGGTGAAAATAGTGA+AGG | 0.667655 | 3.4:-87072510 | MS.gene013322:CDS |
| ACAAAAGCATAGCTAATGGG+TGG | 0.670177 | 3.4:-87070202 | MS.gene013322:CDS |
| GATTCGTCAAGGGATGCGAA+TGG | 0.671019 | 3.4:-87070808 | MS.gene013322:CDS |
| TTACCCGAGCCATTGGAAGG+GGG | 0.715554 | 3.4:-87069956 | MS.gene013322:CDS |
| TCAACTGTGCGACAATAACG+AGG | 0.715629 | 3.4:+87072633 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATGTATAAATAAAG+GGG | - | chr3.4:87070970-87070989 | MS.gene013322:intron | 10.0% |
| !!! | TATTTTATGTATTTTTTCAA+AGG | - | chr3.4:87072547-87072566 | MS.gene013322:CDS | 10.0% |
| !! | AAAATGTATGTATATTGTAA+TGG | + | chr3.4:87072446-87072465 | None:intergenic | 15.0% |
| !! | AAAATTGTGTCAATTAAATT+GGG | + | chr3.4:87070933-87070952 | None:intergenic | 15.0% |
| !! | AATGAGACATTAAATAAATA+AGG | - | chr3.4:87071184-87071203 | MS.gene013322:intron | 15.0% |
| !! | CTCTCAAAAAAAAAAAAAAA+AGG | + | chr3.4:87070841-87070860 | None:intergenic | 15.0% |
| !! | TAGAGAATTATAATGAATAT+GGG | + | chr3.4:87072513-87072532 | None:intergenic | 15.0% |
| !! | TTAGAGAATTATAATGAATA+TGG | + | chr3.4:87072514-87072533 | None:intergenic | 15.0% |
| !!! | TAACTATCTTTAAGATTTTA+AGG | - | chr3.4:87071446-87071465 | MS.gene013322:intron | 15.0% |
| !!! | TAATGAAAATATGTATTTTG+TGG | - | chr3.4:87071684-87071703 | MS.gene013322:intron | 15.0% |
| !! | AGAGAATTATAATGAATATG+GGG | + | chr3.4:87072512-87072531 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr3.4:87071344-87071363 | MS.gene013322:intron | 20.0% |
| !! | ATACGTCATAATTAAGATAA+AGG | - | chr3.4:87072398-87072417 | MS.gene013322:CDS | 20.0% |
| !! | CAAAATTGTGTCAATTAAAT+TGG | + | chr3.4:87070934-87070953 | None:intergenic | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr3.4:87071345-87071364 | MS.gene013322:intron | 20.0% |
| !! | TACGTCATAATTAAGATAAA+GGG | - | chr3.4:87072399-87072418 | MS.gene013322:CDS | 20.0% |
| !! | TAGTAGTGTTATATTGTATT+GGG | - | chr3.4:87071312-87071331 | MS.gene013322:intron | 20.0% |
| !! | TATTAATACCATGTTTATGT+AGG | - | chr3.4:87071985-87072004 | MS.gene013322:intron | 20.0% |
| !! | TCAAAATGTGACAATTAAAA+AGG | - | chr3.4:87071281-87071300 | MS.gene013322:intron | 20.0% |
| !! | TTCAAAATATGAATCAAAAG+AGG | - | chr3.4:87070154-87070173 | MS.gene013322:intron | 20.0% |
| !!! | ATTACCCTTATTTATTAATG+TGG | - | chr3.4:87071143-87071162 | MS.gene013322:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+TGG | - | chr3.4:87071381-87071400 | MS.gene013322:intron | 20.0% |
| !!! | TCAATTGAATGGTTTTAATA+TGG | + | chr3.4:87071523-87071542 | None:intergenic | 20.0% |
| ! | AAATGTATAAATAAAGGGGA+AGG | - | chr3.4:87070974-87070993 | MS.gene013322:intron | 25.0% |
| ! | AACCATCGAAAAAATTAAAG+AGG | - | chr3.4:87071938-87071957 | MS.gene013322:intron | 25.0% |
| ! | AATTAAAGAGGGATCTATAA+AGG | - | chr3.4:87071950-87071969 | MS.gene013322:intron | 25.0% |
| ! | AATTATGCAGATTAAGAGTT+TGG | + | chr3.4:87072724-87072743 | None:intergenic | 25.0% |
| ! | ACCATCGAAAAAATTAAAGA+GGG | - | chr3.4:87071939-87071958 | MS.gene013322:intron | 25.0% |
| ! | ACTTTACAACACTTTCATTA+AGG | - | chr3.4:87072210-87072229 | MS.gene013322:intron | 25.0% |
| ! | ATGTAAAGTGACACTTAAAT+AGG | + | chr3.4:87071089-87071108 | None:intergenic | 25.0% |
| ! | ATGTGACAATTAAAAAGGAA+CGG | - | chr3.4:87071286-87071305 | MS.gene013322:intron | 25.0% |
| ! | ATTAATCACCTACATAAACA+TGG | + | chr3.4:87071996-87072015 | None:intergenic | 25.0% |
| ! | CATATTTGTCTATGTATTGA+AGG | + | chr3.4:87069896-87069915 | None:intergenic | 25.0% |
| ! | CTCTCCACATTAATAAATAA+GGG | + | chr3.4:87071150-87071169 | None:intergenic | 25.0% |
| ! | GAGAAAAAGAAAGTTGTATT+TGG | - | chr3.4:87072297-87072316 | MS.gene013322:intron | 25.0% |
| ! | GCTATGTTAACTATCTTTAA+GGG | - | chr3.4:87070739-87070758 | MS.gene013322:CDS | 25.0% |
| ! | GTAGTAGTGTTATATTGTAT+TGG | - | chr3.4:87071311-87071330 | MS.gene013322:intron | 25.0% |
| ! | TCTCTCCACATTAATAAATA+AGG | + | chr3.4:87071151-87071170 | None:intergenic | 25.0% |
| ! | TGCTATGTTAACTATCTTTA+AGG | - | chr3.4:87070738-87070757 | MS.gene013322:CDS | 25.0% |
| ! | TGCTTATGATCTCTATAATT+GGG | - | chr3.4:87070214-87070233 | MS.gene013322:CDS | 25.0% |
| ! | TTATGGATATCTATCTAGAT+AGG | + | chr3.4:87070688-87070707 | None:intergenic | 25.0% |
| ! | TTGCTTATGATCTCTATAAT+TGG | - | chr3.4:87070213-87070232 | MS.gene013322:CDS | 25.0% |
| ! | TTGTATACCTAAAAAGAGTA+AGG | - | chr3.4:87070334-87070353 | MS.gene013322:intron | 25.0% |
| ! | TTTATAGTTGAAAATGACAG+TGG | - | chr3.4:87071561-87071580 | MS.gene013322:intron | 25.0% |
| !! | ATATGAATCAAAAGAGGTTT+TGG | - | chr3.4:87070160-87070179 | MS.gene013322:intron | 25.0% |
| !! | TAACTATCTTTAAGGGTTTA+GGG | - | chr3.4:87070746-87070765 | MS.gene013322:CDS | 25.0% |
| !! | TTAACTATCTTTAAGGGTTT+AGG | - | chr3.4:87070745-87070764 | MS.gene013322:CDS | 25.0% |
| !! | TTTGTATCCTTACTCTTTTT+AGG | + | chr3.4:87070344-87070363 | None:intergenic | 25.0% |
| !! | TTTTCGGCAAAACTAAAATA+CGG | - | chr3.4:87071825-87071844 | MS.gene013322:intron | 25.0% |
| !! | TTTTGCATGTGTTTATTCAT+TGG | - | chr3.4:87072478-87072497 | MS.gene013322:CDS | 25.0% |
| !!! | AACGAGGTTTTATGTTAAAA+TGG | + | chr3.4:87069923-87069942 | None:intergenic | 25.0% |
| !!! | AGATGCTATCATTACTTTTT+CGG | - | chr3.4:87071809-87071828 | MS.gene013322:intron | 25.0% |
| AAAGCTGAATTCCATTATGT+TGG | - | chr3.4:87071589-87071608 | MS.gene013322:intron | 30.0% | |
| AAATATGCTCTCAATGAGAA+AGG | - | chr3.4:87072575-87072594 | MS.gene013322:CDS | 30.0% | |
| AACTCACAACACTTTCATTA+AGG | - | chr3.4:87072172-87072191 | MS.gene013322:intron | 30.0% | |
| AAGTGACACTTAAAAAGGAA+CGG | + | chr3.4:87071048-87071067 | None:intergenic | 30.0% | |
| AATAGAGAAATGATTCGTCA+AGG | - | chr3.4:87071750-87071769 | MS.gene013322:intron | 30.0% | |
| AATATGCTCTCAATGAGAAA+GGG | - | chr3.4:87072576-87072595 | MS.gene013322:CDS | 30.0% | |
| AGAAAATTGGTCAGTTATTC+CGG | - | chr3.4:87071394-87071413 | MS.gene013322:intron | 30.0% | |
| AGTTGTATTTGGAAACAACA+TGG | - | chr3.4:87072308-87072327 | MS.gene013322:intron | 30.0% | |
| ATAGAGAAATGATTCGTCAA+GGG | - | chr3.4:87071751-87071770 | MS.gene013322:intron | 30.0% | |
| ATGATGAAGTTAGAGACAAA+TGG | - | chr3.4:87069970-87069989 | MS.gene013322:CDS | 30.0% | |
| CACTCAAAATACTACAAATC+TGG | - | chr3.4:87070131-87070150 | MS.gene013322:intron | 30.0% | |
| CATTGATATGTCGAAAGTTA+TGG | + | chr3.4:87070705-87070724 | None:intergenic | 30.0% | |
| GAAACAAAGAACACTAAAGA+AGG | - | chr3.4:87069999-87070018 | MS.gene013322:CDS | 30.0% | |
| GAGTTAGAAATGTTCTTTAC+CGG | + | chr3.4:87070269-87070288 | None:intergenic | 30.0% | |
| GCTTATGATCTCTATAATTG+GGG | - | chr3.4:87070215-87070234 | MS.gene013322:CDS | 30.0% | |
| GTCATAATTAAGATAAAGGG+AGG | - | chr3.4:87072402-87072421 | MS.gene013322:CDS | 30.0% | |
| TCAATTCTCGTAATATCTGA+AGG | + | chr3.4:87072279-87072298 | None:intergenic | 30.0% | |
| TCCAAAAGTGACACTTAAAA+AGG | + | chr3.4:87071053-87071072 | None:intergenic | 30.0% | |
| TGTCTATGTATTGAAGGAAT+TGG | + | chr3.4:87069890-87069909 | None:intergenic | 30.0% | |
| TTATAGATGTCTAGCTAGAT+AGG | + | chr3.4:87070878-87070897 | None:intergenic | 30.0% | |
| TTGTGTCAATTAAATTGGGA+CGG | + | chr3.4:87070929-87070948 | None:intergenic | 30.0% | |
| ! | ATAACCTTCACTATTTTCAC+CGG | + | chr3.4:87070066-87070085 | None:intergenic | 30.0% |
| ! | ATAATGGAATTCAGCTTTAC+AGG | + | chr3.4:87071587-87071606 | None:intergenic | 30.0% |
| ! | GATACAAAAGCATAGCTAAT+GGG | - | chr3.4:87072364-87072383 | MS.gene013322:CDS | 30.0% |
| ! | GCAACATTTATTGATTGTCT+TGG | - | chr3.4:87071245-87071264 | MS.gene013322:intron | 30.0% |
| ! | TACTGCACTTTTCAATTGAA+TGG | + | chr3.4:87071534-87071553 | None:intergenic | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | - | chr3.4:87071358-87071377 | MS.gene013322:intron | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | - | chr3.4:87071359-87071378 | MS.gene013322:intron | 30.0% |
| !!! | ATTTTAAGGTGCTTCTAACA+TGG | - | chr3.4:87071460-87071479 | MS.gene013322:intron | 30.0% |
| !!! | TCCCTCTTTAATTTTTTCGA+TGG | + | chr3.4:87071943-87071962 | None:intergenic | 30.0% |
| !!! | TCCTTTTTAAGTGTCACTTT+TGG | - | chr3.4:87071049-87071068 | MS.gene013322:intron | 30.0% |
| AAGTCTGCAGTTATTGATGT+TGG | - | chr3.4:87071915-87071934 | MS.gene013322:intron | 35.0% | |
| AGGAACATTGGAAGTTTATG+AGG | - | chr3.4:87070019-87070038 | MS.gene013322:intron | 35.0% | |
| AGTTGTAAAGGTCCCAATTT+GGG | + | chr3.4:87071879-87071898 | None:intergenic | 35.0% | |
| ATAGCATCTACAACATCAAC+CGG | + | chr3.4:87071798-87071817 | None:intergenic | 35.0% | |
| ATGAAGTTAGAGACAAATGG+AGG | - | chr3.4:87069973-87069992 | MS.gene013322:CDS | 35.0% | |
| CTCTATTGAAGACATGAAAC+TGG | + | chr3.4:87071737-87071756 | None:intergenic | 35.0% | |
| GAAAATTGGTCAGTTATTCC+GGG | - | chr3.4:87071395-87071414 | MS.gene013322:intron | 35.0% | |
| GAACACTAAAGAAGGAACAT+TGG | - | chr3.4:87070007-87070026 | MS.gene013322:intron | 35.0% | |
| GGTATTTATCGTCCCAAATT+GGG | - | chr3.4:87071864-87071883 | MS.gene013322:intron | 35.0% | |
| GTATGAGTGTGACATAACTT+TGG | - | chr3.4:87072194-87072213 | MS.gene013322:intron | 35.0% | |
| GTGTGACATAACTTTGGATT+TGG | - | chr3.4:87072238-87072257 | MS.gene013322:intron | 35.0% | |
| TGACAATTAAAAAGGAACGG+AGG | - | chr3.4:87071289-87071308 | MS.gene013322:intron | 35.0% | |
| TGTATAAATAAAGGGGAAGG+TGG | - | chr3.4:87070977-87070996 | MS.gene013322:intron | 35.0% | |
| ! | GGATACAAAAGCATAGCTAA+TGG | - | chr3.4:87072363-87072382 | MS.gene013322:CDS | 35.0% |
| !! | CAAAAGAGGTTTTGGTAGTT+GGG | - | chr3.4:87070168-87070187 | MS.gene013322:intron | 35.0% |
| !! | GTATTGAAGGAATTGGTCTT+TGG | + | chr3.4:87069883-87069902 | None:intergenic | 35.0% |
| !! | TCAAAAGAGGTTTTGGTAGT+TGG | - | chr3.4:87070167-87070186 | MS.gene013322:intron | 35.0% |
| ACTTTGGATTTGGATGTCAC+AGG | - | chr3.4:87072248-87072267 | MS.gene013322:intron | 40.0% | |
| CAACTATCGAGCCAACATAA+TGG | + | chr3.4:87071603-87071622 | None:intergenic | 40.0% | |
| CGGTATTTATCGTCCCAAAT+TGG | - | chr3.4:87071863-87071882 | MS.gene013322:intron | 40.0% | |
| GACACTTAAAAAGGAACGGA+GGG | + | chr3.4:87071044-87071063 | None:intergenic | 40.0% | |
| GAGTTGTAAAGGTCCCAATT+TGG | + | chr3.4:87071880-87071899 | None:intergenic | 40.0% | |
| GCGAATGGTGAATTATTTGC+CGG | - | chr3.4:87071776-87071795 | MS.gene013322:intron | 40.0% | |
| GCTTCTAACATGGAAAAGTG+CGG | - | chr3.4:87071470-87071489 | MS.gene013322:intron | 40.0% | |
| GGTTATATTCCTAATGTGCC+TGG | - | chr3.4:87070080-87070099 | MS.gene013322:intron | 40.0% | |
| TGACACTTAAAAAGGAACGG+AGG | + | chr3.4:87071045-87071064 | None:intergenic | 40.0% | |
| TGTCAATTAAATTGGGACGG+AGG | + | chr3.4:87070926-87070945 | None:intergenic | 40.0% | |
| TTACAACTCAAGAACGTGAC+AGG | - | chr3.4:87071891-87071910 | MS.gene013322:intron | 40.0% | |
| TTATGAGGCAAAGCTTCTTG+TGG | - | chr3.4:87070034-87070053 | MS.gene013322:intron | 40.0% | |
| ! | ACAAAAGCATAGCTAATGGG+TGG | - | chr3.4:87072367-87072386 | MS.gene013322:CDS | 40.0% |
| ! | ACTGGATAACTTTGAAGGAG+AGG | - | chr3.4:87070103-87070122 | MS.gene013322:intron | 40.0% |
| ! | GTCACGTTCTTGAGTTGTAA+AGG | + | chr3.4:87071891-87071910 | None:intergenic | 40.0% |
| !! | ACGGAGGGAGTACAATATTT+TGG | - | chr3.4:87071418-87071437 | MS.gene013322:intron | 40.0% |
| !! | GAAGGAATTGGTCTTTGGAT+AGG | + | chr3.4:87069878-87069897 | None:intergenic | 40.0% |
| !! | GAATTGGTCTTTGGATAGGT+AGG | + | chr3.4:87069874-87069893 | None:intergenic | 40.0% |
| AAAATGCTTACCCGAGCCAT+TGG | - | chr3.4:87072606-87072625 | MS.gene013322:CDS | 45.0% | |
| ATTGGTCAGTTATTCCGGGA+CGG | - | chr3.4:87071399-87071418 | MS.gene013322:intron | 45.0% | |
| CCTTCAAAGTTATCCAGTCC+AGG | + | chr3.4:87070101-87070120 | None:intergenic | 45.0% | |
| GACTTCGAACGACAATAGAC+GGG | + | chr3.4:87070247-87070266 | None:intergenic | 45.0% | |
| GGACTTCGAACGACAATAGA+CGG | + | chr3.4:87070248-87070267 | None:intergenic | 45.0% | |
| GGGACGATAAATACCGTACT+TGG | + | chr3.4:87071859-87071878 | None:intergenic | 45.0% | |
| GGTCTTTGGATAGGTAGGTT+GGG | + | chr3.4:87069869-87069888 | None:intergenic | 45.0% | |
| GTCTATTGTCGTTCGAAGTC+CGG | - | chr3.4:87070247-87070266 | MS.gene013322:CDS | 45.0% | |
| TACGGTGATCTGTCCAAGTA+CGG | - | chr3.4:87071843-87071862 | MS.gene013322:intron | 45.0% | |
| TATTCCTAATGTGCCTGGAC+TGG | - | chr3.4:87070085-87070104 | MS.gene013322:intron | 45.0% | |
| TCAACTGTGCGACAATAACG+AGG | + | chr3.4:87069939-87069958 | None:intergenic | 45.0% | |
| TGGTCTTTGGATAGGTAGGT+TGG | + | chr3.4:87069870-87069889 | None:intergenic | 45.0% | |
| TTATCCAGTCCAGGCACATT+AGG | + | chr3.4:87070092-87070111 | None:intergenic | 45.0% | |
| ! | ACCTTCACTATTTTCACCGG+TGG | + | chr3.4:87070063-87070082 | None:intergenic | 45.0% |
| ! | CATAGCTAATGGGTGGCTTA+AGG | - | chr3.4:87072374-87072393 | MS.gene013322:CDS | 45.0% |
| ! | CCTGGACTGGATAACTTTGA+AGG | - | chr3.4:87070098-87070117 | MS.gene013322:intron | 45.0% |
| ! | GATCATGGATTATACTGCGC+AGG | - | chr3.4:87072635-87072654 | MS.gene013322:CDS | 45.0% |
| ! | GGATAACTTTGAAGGAGAGG+TGG | - | chr3.4:87070106-87070125 | MS.gene013322:intron | 45.0% |
| ! | GGTTTAGGGTGCTTCTAACA+TGG | - | chr3.4:87070760-87070779 | MS.gene013322:CDS | 45.0% |
| !!! | TGGCTCGGGTAAGCATTTTT+TGG | + | chr3.4:87072605-87072624 | None:intergenic | 45.0% |
| !! | AAAAAAAATGTATAAATAAA+GGG | - | chr3.4:87070969-87070988 | MS.gene013322:intron | 5.0% |
| !! | TAAAAAAAATGTATAAATAA+AGG | - | chr3.4:87070968-87070987 | MS.gene013322:intron | 5.0% |
| !! | TTTATTTAAAAATTTAATGA+CGG | - | chr3.4:87070434-87070453 | MS.gene013322:intron | 5.0% |
| ACTAGCAAGGAGAGGCTTGT+GGG | - | chr3.4:87072658-87072677 | MS.gene013322:CDS | 50.0% | |
| ATATTGTACTCCCTCCGTCC+CGG | + | chr3.4:87071416-87071435 | None:intergenic | 50.0% | |
| ATCCATGATCCCCCTTCCAA+TGG | + | chr3.4:87072625-87072644 | None:intergenic | 50.0% | |
| GATGCAATCGTATTCGCGAC+TGG | - | chr3.4:87072342-87072361 | MS.gene013322:CDS | 50.0% | |
| GATTCGTCAAGGGATGCGAA+TGG | - | chr3.4:87071761-87071780 | MS.gene013322:intron | 50.0% | |
| GCCACCGGTGAAAATAGTGA+AGG | - | chr3.4:87070059-87070078 | MS.gene013322:intron | 50.0% | |
| GGATGCAGAGTCAATTGCAG+AGG | - | chr3.4:87072691-87072710 | MS.gene013322:CDS | 50.0% | |
| GTAGTTGGGAGTGGTAACTC+AGG | - | chr3.4:87070182-87070201 | MS.gene013322:intron | 50.0% | |
| TGGGAGTGGTAACTCAGGAA+TGG | - | chr3.4:87070187-87070206 | MS.gene013322:intron | 50.0% | |
| ! | TATACTGCGCAGGACTAGCA+AGG | - | chr3.4:87072645-87072664 | MS.gene013322:CDS | 50.0% |
| !! | GAGGTTTTGGTAGTTGGGAG+TGG | - | chr3.4:87070173-87070192 | MS.gene013322:intron | 50.0% |
| AAGCTTCTTGTGGTCGCCAC+CGG | - | chr3.4:87070044-87070063 | MS.gene013322:intron | 55.0% | |
| AGCCATTGGAAGGGGGATCA+TGG | - | chr3.4:87072620-87072639 | MS.gene013322:CDS | 55.0% | |
| AGGCTTGTGGGGAGTCAAGA+TGG | - | chr3.4:87072670-87072689 | MS.gene013322:CDS | 55.0% | |
| CTAGCAAGGAGAGGCTTGTG+GGG | - | chr3.4:87072659-87072678 | MS.gene013322:CDS | 55.0% | |
| CTTACCCGAGCCATTGGAAG+GGG | - | chr3.4:87072612-87072631 | MS.gene013322:CDS | 55.0% | |
| GACTAGCAAGGAGAGGCTTG+TGG | - | chr3.4:87072657-87072676 | MS.gene013322:CDS | 55.0% | |
| GCTTACCCGAGCCATTGGAA+GGG | - | chr3.4:87072611-87072630 | MS.gene013322:CDS | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr3.4:87071403-87071422 | MS.gene013322:intron | 55.0% | |
| TGATCCCCCTTCCAATGGCT+CGG | + | chr3.4:87072620-87072639 | None:intergenic | 55.0% | |
| TGCTTACCCGAGCCATTGGA+AGG | - | chr3.4:87072610-87072629 | MS.gene013322:CDS | 55.0% | |
| TTACCCGAGCCATTGGAAGG+GGG | - | chr3.4:87072613-87072632 | MS.gene013322:CDS | 55.0% | |
| ! | GATAGGTAGGTTGGGCCTGA+GGG | + | chr3.4:87069861-87069880 | None:intergenic | 55.0% |
| GATCCCCCTTCCAATGGCTC+GGG | + | chr3.4:87072619-87072638 | None:intergenic | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr3.4:87071402-87071421 | MS.gene013322:intron | 60.0% | |
| ! | GGATAGGTAGGTTGGGCCTG+AGG | + | chr3.4:87069862-87069881 | None:intergenic | 60.0% |
| ! | TGCGCAGGACTAGCAAGGAG+AGG | - | chr3.4:87072650-87072669 | MS.gene013322:CDS | 60.0% |
| ! | AGGTAGGTTGGGCCTGAGGG+TGG | + | chr3.4:87069858-87069877 | None:intergenic | 65.0% |
| ! | GGTAGGTTGGGCCTGAGGGT+GGG | + | chr3.4:87069857-87069876 | None:intergenic | 65.0% |
| GTTGGGCCTGAGGGTGGGTG+AGG | + | chr3.4:87069852-87069871 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 87069846 | 87072745 | 87069846 | ID=MS.gene013322 |
| chr3.4 | mRNA | 87069846 | 87072745 | 87069846 | ID=MS.gene013322.t1;Parent=MS.gene013322 |
| chr3.4 | exon | 87072323 | 87072745 | 87072323 | ID=MS.gene013322.t1.exon1;Parent=MS.gene013322.t1 |
| chr3.4 | CDS | 87072323 | 87072745 | 87072323 | ID=cds.MS.gene013322.t1;Parent=MS.gene013322.t1 |
| chr3.4 | exon | 87070620 | 87070853 | 87070620 | ID=MS.gene013322.t1.exon2;Parent=MS.gene013322.t1 |
| chr3.4 | CDS | 87070620 | 87070853 | 87070620 | ID=cds.MS.gene013322.t1;Parent=MS.gene013322.t1 |
| chr3.4 | exon | 87070196 | 87070321 | 87070196 | ID=MS.gene013322.t1.exon3;Parent=MS.gene013322.t1 |
| chr3.4 | CDS | 87070196 | 87070321 | 87070196 | ID=cds.MS.gene013322.t1;Parent=MS.gene013322.t1 |
| chr3.4 | exon | 87069846 | 87070022 | 87069846 | ID=MS.gene013322.t1.exon4;Parent=MS.gene013322.t1 |
| chr3.4 | CDS | 87069846 | 87070022 | 87069846 | ID=cds.MS.gene013322.t1;Parent=MS.gene013322.t1 |
| Gene Sequence |
| Protein sequence |
