AlfalfaGEDB | MS.gene09884

M. sativa cultivar XinJiangDaYe / MS.gene09884

KEGG: K11816
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004497 GO:0004499 GO:0005488 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0016709 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050660 GO:0050661 GO:0050662 GO:0055114 GO:0097159 GO:1901265 GO:1901363
PFAM: PF00743.22

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09884.t1	XP_003625456.1	98.8	416	5	0	1	416	1	416	1.20E-242	848.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09884.t1	Q9SVU0	75.1	425	95	4	1	415	1	424	1.0e-189	664.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09884.t1	G7KZI9	98.8	416	5	0	1	416	1	416	8.9e-243	848.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051440	MS.gene09884	0.800653	1.30E-48	-1.69E-46
MS.gene052606	MS.gene09884	0.814272	1.68E-51	-1.69E-46
MS.gene056748	MS.gene09884	0.807776	4.28E-50	-1.69E-46
MS.gene056988	MS.gene09884	0.801181	1.02E-48	-1.69E-46
MS.gene057768	MS.gene09884	0.800914	1.15E-48	-1.69E-46
MS.gene060087	MS.gene09884	0.80056	1.36E-48	-1.69E-46

Showing 1 to 6 of 6 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene015953	MS.gene09884	PPI
MS.gene019484	MS.gene09884	PPI
MS.gene027681	MS.gene09884	PPI
MS.gene031178	MS.gene09884	PPI
MS.gene035805	MS.gene09884	PPI
MS.gene049295	MS.gene09884	PPI
MS.gene064542	MS.gene09884	PPI
MS.gene09884	MS.gene44331	PPI
MS.gene09884	MS.gene059136	PPI
MS.gene09884	MS.gene86173	PPI

Showing 1 to 10 of 30 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09884.t1	MTR_7g099330	98.798	416	5	0	1	416	1	416	0.0	852
MS.gene09884.t1	MTR_1g069275	78.436	422	84	4	1	416	1	421	0.0	687
MS.gene09884.t1	MTR_7g099160	97.231	325	9	0	92	416	213	537	0.0	657
MS.gene09884.t1	MTR_1g046230	72.642	424	107	2	1	416	1	423	0.0	637
MS.gene09884.t1	MTR_1g011630	58.268	381	156	2	17	395	9	388	5.10e-176	497
MS.gene09884.t1	MTR_1g008380	58.974	390	153	3	17	400	35	423	1.23e-173	492
MS.gene09884.t1	MTR_3g109520	59.536	388	149	3	19	399	34	420	9.19e-171	484
MS.gene09884.t1	MTR_6g086870	56.391	399	160	5	9	395	4	400	1.72e-167	476
MS.gene09884.t1	MTR_7g107710	45.953	383	195	4	25	400	7	384	7.49e-120	353
MS.gene09884.t1	MTR_7g107690	42.480	379	206	4	25	396	9	382	3.64e-114	339

Showing 1 to 10 of 19 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09884.t1	AT4G28720	75.059	425	95	4	1	415	1	424	0.0	672
MS.gene09884.t1	AT5G43890	72.813	423	105	4	1	414	1	422	0.0	644
MS.gene09884.t1	AT1G04180	72.381	420	109	4	1	414	1	419	0.0	637
MS.gene09884.t1	AT1G04610	68.019	419	124	2	7	416	20	437	0.0	603
MS.gene09884.t1	AT2G33230	66.667	423	130	3	3	416	11	431	0.0	569
MS.gene09884.t1	AT5G25620	60.199	402	151	5	9	402	16	416	5.40e-178	503
MS.gene09884.t1	AT5G25620	60.150	399	150	5	9	399	16	413	6.02e-177	501
MS.gene09884.t1	AT5G11320	58.438	397	159	2	19	415	12	402	4.79e-173	490
MS.gene09884.t1	AT4G32540	56.589	387	165	3	15	399	12	397	1.32e-167	476
MS.gene09884.t1	AT4G32540	56.041	389	166	4	15	399	12	399	7.44e-166	472

Showing 1 to 10 of 19 entries

Previous1 2Next

Find 94 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCACCAATGTCCAAAAC+CGG	0.515634	7.3:+13039600	None:intergenic
AAAGTTCTTGTTGTTGGATG+TGG	0.420882	7.3:-13040005	MS.gene09884:CDS
AACGGCGTGAGAGAAAGTCT+TGG	0.654245	7.3:+13040528	None:intergenic
AACTTCAAAGGACCCATTGA+AGG	0.449923	7.3:+13039645	None:intergenic
AAGTTGAGTACATTTGTAGG+TGG	0.605781	7.3:-13040151	MS.gene09884:CDS
AATTCAGGACTATATGCTGT+AGG	0.534469	7.3:-13039095	MS.gene09884:CDS
ACCGCAGCAATGTCCCTTCT+TGG	0.278978	7.3:-13039452	MS.gene09884:CDS
AGAAGGAAAGACACCGGTTT+TGG	0.315038	7.3:-13039613	MS.gene09884:CDS
AGATGCCATTTCCACATGGT+TGG	0.512278	7.3:-13039124	MS.gene09884:CDS
AGCATGTCTTAGAGAACAAG+GGG	0.647019	7.3:-13040447	MS.gene09884:CDS

Showing 1 to 10 of 94 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATGAAGTTGAGTACATTTGT+AGG	-	chr7.3:13039356-13039375	MS.gene09884:intron	30.0%
ATTAATACTGACACAGATAC+CGG	+	chr7.3:13039623-13039642	None:intergenic	30.0%
CACAAGATATTGGAAAAGTT+TGG	-	chr7.3:13040488-13040507	MS.gene09884:CDS	30.0%
TTTGGTTATGTTATACAGGA+AGG	-	chr7.3:13040334-13040353	MS.gene09884:CDS	30.0%
AAGTTGAGTACATTTGTAGG+TGG	-	chr7.3:13039359-13039378	MS.gene09884:intron	35.0%
AATTCAGGACTATATGCTGT+AGG	-	chr7.3:13040415-13040434	MS.gene09884:CDS	35.0%
AGGTACAACATTTATGTCAC+CGG	+	chr7.3:13039950-13039969	None:intergenic	35.0%
ATGCTTGTGATTACAAGTCA+GGG	-	chr7.3:13039464-13039483	MS.gene09884:CDS	35.0%
ATGTTGTACCTGGAATCAAA+AGG	-	chr7.3:13039959-13039978	MS.gene09884:CDS	35.0%
ATTCAGGACTATATGCTGTA+GGG	-	chr7.3:13040416-13040435	MS.gene09884:CDS	35.0%

Showing 1 to 10 of 128 entries

Previous1 2 3 4 5…13Next

Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	13038953	13040579	13038953	ID=MS.gene09884
chr7.3	mRNA	13038953	13040579	13038953	ID=MS.gene09884.t1;Parent=MS.gene09884
chr7.3	exon	13039932	13040579	13039932	ID=MS.gene09884.t1.exon1;Parent=MS.gene09884.t1
chr7.3	CDS	13039932	13040579	13039932	ID=cds.MS.gene09884.t1;Parent=MS.gene09884.t1
chr7.3	exon	13039446	13039820	13039446	ID=MS.gene09884.t1.exon2;Parent=MS.gene09884.t1
chr7.3	CDS	13039446	13039820	13039446	ID=cds.MS.gene09884.t1;Parent=MS.gene09884.t1
chr7.3	exon	13038953	13039180	13038953	ID=MS.gene09884.t1.exon3;Parent=MS.gene09884.t1
chr7.3	CDS	13038953	13039180	13038953	ID=cds.MS.gene09884.t1;Parent=MS.gene09884.t1

Gene Sequence

>MS.gene09884

ATGGAAAATTTATTTCGTCTAGCTGATCACCAAGACTTTCTCTCACGCCGTTGCATTTGGGTCAATGGACCTGTGATCATAGGTGCAGGTCCATCTGGTCTTGCAACGGCAGCATGTCTTAGAGAACAAGGGGTACCCTTCGTTGTTCTCGAAAGAGCTGATTGCATAGCATCACTATGGCAAAAAAGAACCTACGACAGATTGAAACTTCACCTTCCAAAACAATTCTGTCAACTACCTAACCTTCCAATGCCTGAAGATTTCCCTGAATACCCTTCAAAGAAACAATTCATAAGCTACCTTGAAAACTATGCTAACAAATTTGAAATCAACCCGCAATTCAACGAGTGTGTTCAATCTGCTAAGTATGATGAAACCAGTGGATTGTGGAGGGTTAAGACAAATGAAGTTGAGTACATTTGTAGGTGGCTTGTTGTTGCTACCGGCGAAAATGCTGAGTGTGTTACTCCTGAAATTGAAGGACTTTCTGAATTCAAAGGTGAAGTTGTTTATGCTTGTGATTACAAGTCAGGGAAAAATTTTGAAGGAAAGAAAGTTCTTGTTGTTGGATGTGGAAATTCTGGAATGGAACTCTCACTTGATCTTAGCAATCATCATGCTTTACCTTCCATGGTTGTTCGTAGCTCGGTAAGTTCTTTTTCAGTGTCCGGTATCTGTGTCAGTATTAATTTCATAGTAAATTTTTTTAACTTAGGATGAAAAAAATCTAACTGGGCTGTTCTGTTTTTTTTACTACAGGTTCATGTGCTACCTAGAGAAATATTTGGAATATCAACTTTTGAATTAGCGGTTATGATGTTGAAGTGGTTACCACTTTGGATTGTGGACAAGCTTTTGTTGATTTTGACATGGTTCATTTTGGGTGACATGGAAAAATATGGTATCAAAAGGCCTTCAATGGGTCCTTTGAAGTTGAAGAACACAGAAGGAAAGACACCGGTTTTGGACATTGGTGCTTTGGAGAAAATTAGATCCGGTGACATAAATGTTGTACCTGGAATCAAAAGGTTTAATAATCATGGTGAAGTTGAGCTTGTTAATGGTGAAAAACTTGATATTGATGCAGTTGTTCTTGCTACCGGTTACCGCAGCAATGTCCCTTCTTGGCTTCAGGTGAATATATGTTCTAGATCTGTTTTTCTTTTTTAACTAGTTGACTTAGATCCTCTTCTGGCCGCTCTGGCTAAATCTTAGTTGTTGGATTAATCTAACATCTGAAATGTTAAAATATTCCGACAACAAAGATTTTACCGGAGGATAGAAAAAGACATGTTGTACTATTGTACAATGTCAAATTTAGAAGCTTCTTTTTTTATTATAATTATTATTATTTGTTTGTGTGATCAAGTAACTAATTAATTTTGGTTATGTTATACAGGAAGGTGAATTTTTCTCCAAAAATGGATACCCAAAGATGCCATTTCCACATGGTTGGAAGGGAAATTCAGGACTATATGCTGTAGGGTTCACAAAGAGAGGGCTTTCTGGTGCTTCATCTGATGCTGTTAAAATTGCACAAGATATTGGAAAAGTTTGGAAACAAGAGACAAAACAAAAGAAGCAACGCACCACTGCTTGTCATAGACGTTGCATTTCACAATTCTAA

Protein sequence

>MS.gene09884.t1

MENLFRLADHQDFLSRRCIWVNGPVIIGAGPSGLATAACLREQGVPFVVLERADCIASLWQKRTYDRLKLHLPKQFCQLPNLPMPEDFPEYPSKKQFISYLENYANKFEINPQFNECVQSAKYDETSGLWRVKTNEVEYICRWLVVATGENAECVTPEIEGLSEFKGEVVYACDYKSGKNFEGKKVLVVGCGNSGMELSLDLSNHHALPSMVVRSSVHVLPREIFGISTFELAVMMLKWLPLWIVDKLLLILTWFILGDMEKYGIKRPSMGPLKLKNTEGKTPVLDIGALEKIRSGDINVVPGIKRFNNHGEVELVNGEKLDIDAVVLATGYRSNVPSWLQEGEFFSKNGYPKMPFPHGWKGNSGLYAVGFTKRGLSGASSDAVKIAQDIGKVWKQETKQKKQRTTACHRRCISQF