Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09884.t1 | XP_003625456.1 | 98.8 | 416 | 5 | 0 | 1 | 416 | 1 | 416 | 1.20E-242 | 848.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09884.t1 | Q9SVU0 | 75.1 | 425 | 95 | 4 | 1 | 415 | 1 | 424 | 1.0e-189 | 664.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09884.t1 | G7KZI9 | 98.8 | 416 | 5 | 0 | 1 | 416 | 1 | 416 | 8.9e-243 | 848.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051440 | MS.gene09884 | 0.800653 | 1.30E-48 | -1.69E-46 |
| MS.gene052606 | MS.gene09884 | 0.814272 | 1.68E-51 | -1.69E-46 |
| MS.gene056748 | MS.gene09884 | 0.807776 | 4.28E-50 | -1.69E-46 |
| MS.gene056988 | MS.gene09884 | 0.801181 | 1.02E-48 | -1.69E-46 |
| MS.gene057768 | MS.gene09884 | 0.800914 | 1.15E-48 | -1.69E-46 |
| MS.gene060087 | MS.gene09884 | 0.80056 | 1.36E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09884 | MS.gene44331 | PPI |
| MS.gene015953 | MS.gene09884 | PPI |
| MS.gene09884 | MS.gene059136 | PPI |
| MS.gene064542 | MS.gene09884 | PPI |
| MS.gene031178 | MS.gene09884 | PPI |
| MS.gene09884 | MS.gene86173 | PPI |
| MS.gene09884 | MS.gene32792 | PPI |
| MS.gene09884 | MS.gene73119 | PPI |
| MS.gene09884 | MS.gene40340 | PPI |
| MS.gene09884 | MS.gene06418 | PPI |
| MS.gene09884 | MS.gene021474 | PPI |
| MS.gene09884 | MS.gene44332 | PPI |
| MS.gene64265 | MS.gene09884 | PPI |
| MS.gene09884 | MS.gene53594 | PPI |
| MS.gene36879 | MS.gene09884 | PPI |
| MS.gene09884 | MS.gene014685 | PPI |
| MS.gene049295 | MS.gene09884 | PPI |
| MS.gene56048 | MS.gene09884 | PPI |
| MS.gene57685 | MS.gene09884 | PPI |
| MS.gene09884 | MS.gene054944 | PPI |
| MS.gene09884 | MS.gene013322 | PPI |
| MS.gene09884 | MS.gene60245 | PPI |
| MS.gene035805 | MS.gene09884 | PPI |
| MS.gene31616 | MS.gene09884 | PPI |
| MS.gene51580 | MS.gene09884 | PPI |
| MS.gene019484 | MS.gene09884 | PPI |
| MS.gene027681 | MS.gene09884 | PPI |
| MS.gene61665 | MS.gene09884 | PPI |
| MS.gene29205 | MS.gene09884 | PPI |
| MS.gene09884 | MS.gene064951 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09884.t1 | MTR_7g099330 | 98.798 | 416 | 5 | 0 | 1 | 416 | 1 | 416 | 0.0 | 852 |
| MS.gene09884.t1 | MTR_1g069275 | 78.436 | 422 | 84 | 4 | 1 | 416 | 1 | 421 | 0.0 | 687 |
| MS.gene09884.t1 | MTR_7g099160 | 97.231 | 325 | 9 | 0 | 92 | 416 | 213 | 537 | 0.0 | 657 |
| MS.gene09884.t1 | MTR_1g046230 | 72.642 | 424 | 107 | 2 | 1 | 416 | 1 | 423 | 0.0 | 637 |
| MS.gene09884.t1 | MTR_1g011630 | 58.268 | 381 | 156 | 2 | 17 | 395 | 9 | 388 | 5.10e-176 | 497 |
| MS.gene09884.t1 | MTR_1g008380 | 58.974 | 390 | 153 | 3 | 17 | 400 | 35 | 423 | 1.23e-173 | 492 |
| MS.gene09884.t1 | MTR_3g109520 | 59.536 | 388 | 149 | 3 | 19 | 399 | 34 | 420 | 9.19e-171 | 484 |
| MS.gene09884.t1 | MTR_6g086870 | 56.391 | 399 | 160 | 5 | 9 | 395 | 4 | 400 | 1.72e-167 | 476 |
| MS.gene09884.t1 | MTR_7g107710 | 45.953 | 383 | 195 | 4 | 25 | 400 | 7 | 384 | 7.49e-120 | 353 |
| MS.gene09884.t1 | MTR_7g107690 | 42.480 | 379 | 206 | 4 | 25 | 396 | 9 | 382 | 3.64e-114 | 339 |
| MS.gene09884.t1 | MTR_5g033260 | 45.093 | 377 | 195 | 4 | 25 | 394 | 7 | 378 | 1.07e-113 | 338 |
| MS.gene09884.t1 | MTR_8g432640 | 45.067 | 375 | 194 | 3 | 25 | 392 | 7 | 376 | 1.92e-112 | 335 |
| MS.gene09884.t1 | MTR_3g088955 | 43.850 | 374 | 196 | 4 | 25 | 390 | 8 | 375 | 2.88e-112 | 335 |
| MS.gene09884.t1 | MTR_3g088925 | 43.432 | 373 | 199 | 3 | 25 | 390 | 8 | 375 | 1.33e-111 | 333 |
| MS.gene09884.t1 | MTR_3g088945 | 43.164 | 373 | 200 | 3 | 25 | 390 | 8 | 375 | 5.72e-111 | 331 |
| MS.gene09884.t1 | MTR_4g051642 | 43.968 | 373 | 196 | 5 | 25 | 390 | 8 | 374 | 9.23e-109 | 326 |
| MS.gene09884.t1 | MTR_3g096030 | 38.068 | 176 | 79 | 2 | 25 | 194 | 7 | 158 | 6.27e-36 | 129 |
| MS.gene09884.t1 | MTR_3g437580 | 23.140 | 242 | 139 | 6 | 26 | 228 | 15 | 248 | 2.06e-11 | 65.5 |
| MS.gene09884.t1 | MTR_3g437580 | 23.140 | 242 | 139 | 6 | 26 | 228 | 15 | 248 | 3.28e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09884.t1 | AT4G28720 | 75.059 | 425 | 95 | 4 | 1 | 415 | 1 | 424 | 0.0 | 672 |
| MS.gene09884.t1 | AT5G43890 | 72.813 | 423 | 105 | 4 | 1 | 414 | 1 | 422 | 0.0 | 644 |
| MS.gene09884.t1 | AT1G04180 | 72.381 | 420 | 109 | 4 | 1 | 414 | 1 | 419 | 0.0 | 637 |
| MS.gene09884.t1 | AT1G04610 | 68.019 | 419 | 124 | 2 | 7 | 416 | 20 | 437 | 0.0 | 603 |
| MS.gene09884.t1 | AT2G33230 | 66.667 | 423 | 130 | 3 | 3 | 416 | 11 | 431 | 0.0 | 569 |
| MS.gene09884.t1 | AT5G25620 | 60.199 | 402 | 151 | 5 | 9 | 402 | 16 | 416 | 5.40e-178 | 503 |
| MS.gene09884.t1 | AT5G25620 | 60.150 | 399 | 150 | 5 | 9 | 399 | 16 | 413 | 6.02e-177 | 501 |
| MS.gene09884.t1 | AT5G11320 | 58.438 | 397 | 159 | 2 | 19 | 415 | 12 | 402 | 4.79e-173 | 490 |
| MS.gene09884.t1 | AT4G32540 | 56.589 | 387 | 165 | 3 | 15 | 399 | 12 | 397 | 1.32e-167 | 476 |
| MS.gene09884.t1 | AT4G32540 | 56.041 | 389 | 166 | 4 | 15 | 399 | 12 | 399 | 7.44e-166 | 472 |
| MS.gene09884.t1 | AT4G13260 | 57.218 | 381 | 155 | 3 | 17 | 390 | 21 | 400 | 3.43e-162 | 462 |
| MS.gene09884.t1 | AT5G11320 | 59.752 | 323 | 129 | 1 | 19 | 341 | 12 | 333 | 1.62e-144 | 416 |
| MS.gene09884.t1 | AT4G13260 | 56.897 | 290 | 119 | 1 | 17 | 300 | 21 | 310 | 4.34e-125 | 364 |
| MS.gene09884.t1 | AT1G48910 | 45.308 | 373 | 192 | 4 | 25 | 390 | 6 | 373 | 3.92e-119 | 352 |
| MS.gene09884.t1 | AT1G21430 | 47.467 | 375 | 180 | 7 | 25 | 390 | 10 | 376 | 4.73e-117 | 347 |
| MS.gene09884.t1 | AT4G13260 | 56.207 | 290 | 119 | 3 | 108 | 390 | 9 | 297 | 4.00e-110 | 326 |
| MS.gene09884.t1 | AT1G65860 | 26.201 | 229 | 129 | 7 | 26 | 222 | 15 | 235 | 5.85e-15 | 77.0 |
| MS.gene09884.t1 | AT5G07800 | 25.346 | 217 | 122 | 5 | 26 | 202 | 18 | 234 | 8.77e-13 | 70.1 |
| MS.gene09884.t1 | AT5G45180 | 25.501 | 349 | 197 | 12 | 25 | 332 | 14 | 340 | 5.87e-12 | 67.8 |
Find 94 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAAAGTCCTTCAATTTC+AGG | 0.167964 | 7.3:+13040089 | None:intergenic |
| TTCTCTCACGCCGTTGCATT+TGG | 0.196198 | 7.3:-13040520 | MS.gene09884:CDS |
| GTTAAAATTGCACAAGATAT+TGG | 0.210104 | 7.3:-13039032 | MS.gene09884:CDS |
| TGTTTCTTTGAAGGGTATTC+AGG | 0.234534 | 7.3:+13040293 | None:intergenic |
| CCATGTGGAAATGGCATCTT+TGG | 0.241543 | 7.3:+13039128 | None:intergenic |
| TTCACAAAGAGAGGGCTTTC+TGG | 0.253444 | 7.3:-13039071 | MS.gene09884:CDS |
| CAATGTCCCTTCTTGGCTTC+AGG | 0.262510 | 7.3:-13039445 | MS.gene09884:intron |
| CACAAGATATTGGAAAAGTT+TGG | 0.264533 | 7.3:-13039022 | MS.gene09884:CDS |
| GTTGTTGGATGTGGAAATTC+TGG | 0.276886 | 7.3:-13039996 | MS.gene09884:CDS |
| ACCGCAGCAATGTCCCTTCT+TGG | 0.278978 | 7.3:-13039452 | MS.gene09884:CDS |
| GTGCTACCTAGAGAAATATT+TGG | 0.304479 | 7.3:-13039792 | MS.gene09884:CDS |
| GGTAGTTGACAGAATTGTTT+TGG | 0.312145 | 7.3:+13040341 | None:intergenic |
| TCTCTCACGCCGTTGCATTT+GGG | 0.312281 | 7.3:-13040519 | MS.gene09884:CDS |
| AGAAGGAAAGACACCGGTTT+TGG | 0.315038 | 7.3:-13039613 | MS.gene09884:CDS |
| GGTGAAGTTGAGCTTGTTAA+TGG | 0.336155 | 7.3:-13039516 | MS.gene09884:CDS |
| CGCCGTTGCATTTGGGTCAA+TGG | 0.349348 | 7.3:-13040512 | MS.gene09884:CDS |
| CCCTTCCAACCATGTGGAAA+TGG | 0.354454 | 7.3:+13039119 | None:intergenic |
| GAACACACTCGTTGAATTGC+GGG | 0.355699 | 7.3:+13040225 | None:intergenic |
| CATGGTTGGAAGGGAAATTC+AGG | 0.364067 | 7.3:-13039110 | MS.gene09884:CDS |
| TATGCTTGTGATTACAAGTC+AGG | 0.381966 | 7.3:-13040047 | MS.gene09884:CDS |
| GGAAAGAAAGTTCTTGTTGT+TGG | 0.397099 | 7.3:-13040011 | MS.gene09884:CDS |
| GGGTATTCAGGGAAATCTTC+AGG | 0.406351 | 7.3:+13040305 | None:intergenic |
| CTTATGAATTGTTTCTTTGA+AGG | 0.406911 | 7.3:+13040284 | None:intergenic |
| TCTTCAGGCATTGGAAGGTT+AGG | 0.415876 | 7.3:+13040320 | None:intergenic |
| TCATCATGCTTTACCTTCCA+TGG | 0.420618 | 7.3:-13039946 | MS.gene09884:CDS |
| TGGTATCAAAAGGCCTTCAA+TGG | 0.420704 | 7.3:-13039658 | MS.gene09884:CDS |
| AAAGTTCTTGTTGTTGGATG+TGG | 0.420882 | 7.3:-13040005 | MS.gene09884:CDS |
| ATCATAGGTGCAGGTCCATC+TGG | 0.430455 | 7.3:-13040482 | MS.gene09884:CDS |
| AGGGACATTGCTGCGGTAAC+CGG | 0.431024 | 7.3:+13039458 | None:intergenic |
| ATCAAAAGGTTTAATAATCA+TGG | 0.435107 | 7.3:-13039537 | MS.gene09884:CDS |
| TTCCATGGTTGTTCGTAGCT+CGG | 0.440887 | 7.3:-13039931 | MS.gene09884:intron |
| ATGAAGTTGAGTACATTTGT+AGG | 0.449172 | 7.3:-13040154 | MS.gene09884:CDS |
| AACTTCAAAGGACCCATTGA+AGG | 0.449923 | 7.3:+13039645 | None:intergenic |
| TTATGAATTGTTTCTTTGAA+GGG | 0.463097 | 7.3:+13040285 | None:intergenic |
| CTGATTGCATAGCATCACTA+TGG | 0.465618 | 7.3:-13040400 | MS.gene09884:CDS |
| GTTTCTTTGAAGGGTATTCA+GGG | 0.466361 | 7.3:+13040294 | None:intergenic |
| TCAGGGAAATCTTCAGGCAT+TGG | 0.472081 | 7.3:+13040311 | None:intergenic |
| TGTTGAAGTGGTTACCACTT+TGG | 0.479523 | 7.3:-13039740 | MS.gene09884:CDS |
| GATATTCCAAATATTTCTCT+AGG | 0.498261 | 7.3:+13039786 | None:intergenic |
| TCTGTGTTCTTCAACTTCAA+AGG | 0.498901 | 7.3:+13039633 | None:intergenic |
| AGGTGGCTTGTTGTTGCTAC+CGG | 0.499132 | 7.3:-13040134 | MS.gene09884:CDS |
| GAAGGACTTTCTGAATTCAA+AGG | 0.499261 | 7.3:-13040080 | MS.gene09884:CDS |
| GCCATTTCCACATGGTTGGA+AGG | 0.503171 | 7.3:-13039120 | MS.gene09884:CDS |
| AGATGCCATTTCCACATGGT+TGG | 0.512278 | 7.3:-13039124 | MS.gene09884:CDS |
| GATGCAGTTGTTCTTGCTAC+CGG | 0.513400 | 7.3:-13039477 | MS.gene09884:CDS |
| AAAGCACCAATGTCCAAAAC+CGG | 0.515634 | 7.3:+13039600 | None:intergenic |
| GTCAATGGACCTGTGATCAT+AGG | 0.520464 | 7.3:-13040497 | MS.gene09884:CDS |
| CTTAACCCTCCACAATCCAC+TGG | 0.522153 | 7.3:+13040181 | None:intergenic |
| CATGTGGAAATGGCATCTTT+GGG | 0.531409 | 7.3:+13039129 | None:intergenic |
| AATTCAGGACTATATGCTGT+AGG | 0.534469 | 7.3:-13039095 | MS.gene09884:CDS |
| ATGCTTGTGATTACAAGTCA+GGG | 0.545079 | 7.3:-13040046 | MS.gene09884:CDS |
| TGTGTTACTCCTGAAATTGA+AGG | 0.546438 | 7.3:-13040098 | MS.gene09884:CDS |
| GGTATCAAAAGGCCTTCAAT+GGG | 0.549973 | 7.3:-13039657 | MS.gene09884:CDS |
| AGGTACAACATTTATGTCAC+CGG | 0.553155 | 7.3:+13039563 | None:intergenic |
| CCATTTCCACATGGTTGGAA+GGG | 0.558378 | 7.3:-13039119 | MS.gene09884:CDS |
| ATATTCACCTGAAGCCAAGA+AGG | 0.558667 | 7.3:+13039438 | None:intergenic |
| TGAACACACTCGTTGAATTG+CGG | 0.561991 | 7.3:+13040224 | None:intergenic |
| GGAAATCTTCAGGCATTGGA+AGG | 0.566772 | 7.3:+13040315 | None:intergenic |
| ATGTTGTACCTGGAATCAAA+AGG | 0.567602 | 7.3:-13039551 | MS.gene09884:CDS |
| GGACCTGTGATCATAGGTGC+AGG | 0.569251 | 7.3:-13040491 | MS.gene09884:CDS |
| TAGCGGTTATGATGTTGAAG+TGG | 0.573120 | 7.3:-13039752 | MS.gene09884:CDS |
| GCTTTGGAGAAAATTAGATC+CGG | 0.578995 | 7.3:-13039582 | MS.gene09884:CDS |
| GCTGTAGGGTTCACAAAGAG+AGG | 0.580060 | 7.3:-13039080 | MS.gene09884:CDS |
| GCTGCCGTTGCAAGACCAGA+TGG | 0.585259 | 7.3:+13040467 | None:intergenic |
| GTGAAGTTTCAATCTGTCGT+AGG | 0.589564 | 7.3:+13040367 | None:intergenic |
| ATTCAGGACTATATGCTGTA+GGG | 0.590290 | 7.3:-13039094 | MS.gene09884:CDS |
| TTGAAGTTGAAGAACACAGA+AGG | 0.590910 | 7.3:-13039630 | MS.gene09884:CDS |
| CCAAAGATGCCATTTCCACA+TGG | 0.597297 | 7.3:-13039128 | MS.gene09884:CDS |
| GCAGCATGTCTTAGAGAACA+AGG | 0.601445 | 7.3:-13040449 | MS.gene09884:CDS |
| TGGATGTGGAAATTCTGGAA+TGG | 0.605555 | 7.3:-13039991 | MS.gene09884:CDS |
| AAGTTGAGTACATTTGTAGG+TGG | 0.605781 | 7.3:-13040151 | MS.gene09884:CDS |
| GGTGACATAAATGTTGTACC+TGG | 0.608839 | 7.3:-13039561 | MS.gene09884:CDS |
| TATTCACCTGAAGCCAAGAA+GGG | 0.613263 | 7.3:+13039439 | None:intergenic |
| CTGTAGGGTTCACAAAGAGA+GGG | 0.613353 | 7.3:-13039079 | MS.gene09884:CDS |
| ATGATGAAACCAGTGGATTG+TGG | 0.614186 | 7.3:-13040190 | MS.gene09884:CDS |
| GGACCTGCACCTATGATCAC+AGG | 0.615165 | 7.3:+13040488 | None:intergenic |
| GTCCATTGACCCAAATGCAA+CGG | 0.615198 | 7.3:+13040510 | None:intergenic |
| GTGGTTACCACTTTGGATTG+TGG | 0.615333 | 7.3:-13039733 | MS.gene09884:CDS |
| AGCTCTTTCGAGAACAACGA+AGG | 0.625793 | 7.3:+13040421 | None:intergenic |
| AGGTCCATCTGGTCTTGCAA+CGG | 0.627266 | 7.3:-13040471 | MS.gene09884:CDS |
| GAATTTCCCTTCCAACCATG+TGG | 0.635313 | 7.3:+13039113 | None:intergenic |
| GAGCTACGAACAACCATGGA+AGG | 0.637115 | 7.3:+13039933 | None:intergenic |
| GCAACGTCTATGACAAGCAG+TGG | 0.639607 | 7.3:+13038968 | None:intergenic |
| AGCTTGTCCACAATCCAAAG+TGG | 0.643807 | 7.3:+13039726 | None:intergenic |
| TACCGAGCTACGAACAACCA+TGG | 0.644442 | 7.3:+13039929 | None:intergenic |
| CAGCATGTCTTAGAGAACAA+GGG | 0.645300 | 7.3:-13040448 | MS.gene09884:CDS |
| AGCATGTCTTAGAGAACAAG+GGG | 0.647019 | 7.3:-13040447 | MS.gene09884:CDS |
| GCTAAGTATGATGAAACCAG+TGG | 0.647995 | 7.3:-13040197 | MS.gene09884:CDS |
| AACGGCGTGAGAGAAAGTCT+TGG | 0.654245 | 7.3:+13040528 | None:intergenic |
| GCCAAGAAGGGACATTGCTG+CGG | 0.662896 | 7.3:+13039451 | None:intergenic |
| GCTCTTTCGAGAACAACGAA+GGG | 0.679788 | 7.3:+13040422 | None:intergenic |
| ATGAAACCAGTGGATTGTGG+AGG | 0.691994 | 7.3:-13040187 | MS.gene09884:CDS |
| GAACACAGAAGGAAAGACAC+CGG | 0.709214 | 7.3:-13039619 | MS.gene09884:CDS |
| TGAAACCAGTGGATTGTGGA+GGG | 0.710675 | 7.3:-13040186 | MS.gene09884:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGTAAATTTTTTTAACTT+AGG | - | chr7.3:13039646-13039665 | MS.gene09884:CDS | 10.0% |
| !!! | ATCAAGTAACTAATTAATTT+TGG | - | chr7.3:13040316-13040335 | MS.gene09884:CDS | 15.0% |
| !! | ATCAAAAGGTTTAATAATCA+TGG | - | chr7.3:13039973-13039992 | MS.gene09884:CDS | 20.0% |
| !!! | AATATCAACTTTTGAATTAG+CGG | - | chr7.3:13039741-13039760 | MS.gene09884:CDS | 20.0% |
| !!! | TAATTTTGGTTATGTTATAC+AGG | - | chr7.3:13040330-13040349 | MS.gene09884:CDS | 20.0% |
| !!! | TTATGAATTGTTTCTTTGAA+GGG | + | chr7.3:13039228-13039247 | None:intergenic | 20.0% |
| ! | AGGATGAAAAAAATCTAACT+GGG | - | chr7.3:13039666-13039685 | MS.gene09884:CDS | 25.0% |
| ! | GATATTCCAAATATTTCTCT+AGG | + | chr7.3:13039727-13039746 | None:intergenic | 25.0% |
| ! | GTTAAAATTGCACAAGATAT+TGG | - | chr7.3:13040478-13040497 | MS.gene09884:CDS | 25.0% |
| ! | TAGGATGAAAAAAATCTAAC+TGG | - | chr7.3:13039665-13039684 | MS.gene09884:CDS | 25.0% |
| ! | TGGAAAAATATGGTATCAAA+AGG | - | chr7.3:13039842-13039861 | MS.gene09884:intron | 25.0% |
| !! | CTTATGAATTGTTTCTTTGA+AGG | + | chr7.3:13039229-13039248 | None:intergenic | 25.0% |
| !!! | ATTTGTTAGCATAGTTTTCA+AGG | + | chr7.3:13039255-13039274 | None:intergenic | 25.0% |
| !!! | ATTTTGACATGGTTCATTTT+GGG | - | chr7.3:13039814-13039833 | MS.gene09884:intron | 25.0% |
| !!! | TGTTCTGTTTTTTTTACTAC+AGG | - | chr7.3:13039690-13039709 | MS.gene09884:CDS | 25.0% |
| !!! | TTATTAAACCTTTTGATTCC+AGG | + | chr7.3:13039970-13039989 | None:intergenic | 25.0% |
| ATGAAGTTGAGTACATTTGT+AGG | - | chr7.3:13039356-13039375 | MS.gene09884:intron | 30.0% | |
| ATTAATACTGACACAGATAC+CGG | + | chr7.3:13039623-13039642 | None:intergenic | 30.0% | |
| CACAAGATATTGGAAAAGTT+TGG | - | chr7.3:13040488-13040507 | MS.gene09884:CDS | 30.0% | |
| TTTGGTTATGTTATACAGGA+AGG | - | chr7.3:13040334-13040353 | MS.gene09884:CDS | 30.0% | |
| ! | AAGTCAGGGAAAAATTTTGA+AGG | - | chr7.3:13039478-13039497 | MS.gene09884:CDS | 30.0% |
| ! | GGTGAATTTTTCTCCAAAAA+TGG | - | chr7.3:13040355-13040374 | MS.gene09884:CDS | 30.0% |
| !! | GATTTTGACATGGTTCATTT+TGG | - | chr7.3:13039813-13039832 | MS.gene09884:intron | 30.0% |
| !!! | AGCTTTTGTTGATTTTGACA+TGG | - | chr7.3:13039803-13039822 | MS.gene09884:intron | 30.0% |
| AAGTTGAGTACATTTGTAGG+TGG | - | chr7.3:13039359-13039378 | MS.gene09884:intron | 35.0% | |
| AATTCAGGACTATATGCTGT+AGG | - | chr7.3:13040415-13040434 | MS.gene09884:CDS | 35.0% | |
| AGGTACAACATTTATGTCAC+CGG | + | chr7.3:13039950-13039969 | None:intergenic | 35.0% | |
| ATGCTTGTGATTACAAGTCA+GGG | - | chr7.3:13039464-13039483 | MS.gene09884:CDS | 35.0% | |
| ATGTTGTACCTGGAATCAAA+AGG | - | chr7.3:13039959-13039978 | MS.gene09884:CDS | 35.0% | |
| ATTCAGGACTATATGCTGTA+GGG | - | chr7.3:13040416-13040435 | MS.gene09884:CDS | 35.0% | |
| GAAGGACTTTCTGAATTCAA+AGG | - | chr7.3:13039430-13039449 | MS.gene09884:intron | 35.0% | |
| GTGCTACCTAGAGAAATATT+TGG | - | chr7.3:13039718-13039737 | MS.gene09884:CDS | 35.0% | |
| TATGCTTGTGATTACAAGTC+AGG | - | chr7.3:13039463-13039482 | MS.gene09884:CDS | 35.0% | |
| TCAGAAAGTCCTTCAATTTC+AGG | + | chr7.3:13039424-13039443 | None:intergenic | 35.0% | |
| TCTGGCTAAATCTTAGTTGT+TGG | - | chr7.3:13040152-13040171 | MS.gene09884:CDS | 35.0% | |
| TCTGTGTTCTTCAACTTCAA+AGG | + | chr7.3:13039880-13039899 | None:intergenic | 35.0% | |
| TTGAAGTTGAAGAACACAGA+AGG | - | chr7.3:13039880-13039899 | MS.gene09884:intron | 35.0% | |
| TTGGGTGACATGGAAAAATA+TGG | - | chr7.3:13039832-13039851 | MS.gene09884:intron | 35.0% | |
| ! | ACATGTCTTTTTCTATCCTC+CGG | + | chr7.3:13040227-13040246 | None:intergenic | 35.0% |
| ! | CATCTTTGGGTATCCATTTT+TGG | + | chr7.3:13040371-13040390 | None:intergenic | 35.0% |
| ! | GGAAAGAAAGTTCTTGTTGT+TGG | - | chr7.3:13039499-13039518 | MS.gene09884:CDS | 35.0% |
| ! | GGTAGTTGACAGAATTGTTT+TGG | + | chr7.3:13039172-13039191 | None:intergenic | 35.0% |
| ! | TCCGACAACAAAGATTTTAC+CGG | - | chr7.3:13040205-13040224 | MS.gene09884:CDS | 35.0% |
| ! | TCCGGTAAAATCTTTGTTGT+CGG | + | chr7.3:13040209-13040228 | None:intergenic | 35.0% |
| ! | TGTGTTACTCCTGAAATTGA+AGG | - | chr7.3:13039412-13039431 | MS.gene09884:intron | 35.0% |
| !! | AAAGTTCTTGTTGTTGGATG+TGG | - | chr7.3:13039505-13039524 | MS.gene09884:CDS | 35.0% |
| !! | GCTTTGGAGAAAATTAGATC+CGG | - | chr7.3:13039928-13039947 | MS.gene09884:intron | 35.0% |
| !! | GTTTCTTTGAAGGGTATTCA+GGG | + | chr7.3:13039219-13039238 | None:intergenic | 35.0% |
| !! | TGTTTCTTTGAAGGGTATTC+AGG | + | chr7.3:13039220-13039239 | None:intergenic | 35.0% |
| !!! | GTAAGTTCTTTTTCAGTGTC+CGG | - | chr7.3:13039601-13039620 | MS.gene09884:CDS | 35.0% |
| !!! | GTTGACAGAATTGTTTTGGA+AGG | + | chr7.3:13039168-13039187 | None:intergenic | 35.0% |
| AACTTCAAAGGACCCATTGA+AGG | + | chr7.3:13039868-13039887 | None:intergenic | 40.0% | |
| AGCATGTCTTAGAGAACAAG+GGG | - | chr7.3:13039063-13039082 | MS.gene09884:CDS | 40.0% | |
| ATATTCACCTGAAGCCAAGA+AGG | + | chr7.3:13040075-13040094 | None:intergenic | 40.0% | |
| CAACTAAGATTTAGCCAGAG+CGG | + | chr7.3:13040151-13040170 | None:intergenic | 40.0% | |
| CAGCATGTCTTAGAGAACAA+GGG | - | chr7.3:13039062-13039081 | MS.gene09884:CDS | 40.0% | |
| CATGTGGAAATGGCATCTTT+GGG | + | chr7.3:13040384-13040403 | None:intergenic | 40.0% | |
| CTGATTGCATAGCATCACTA+TGG | - | chr7.3:13039110-13039129 | MS.gene09884:CDS | 40.0% | |
| GCTAAGTATGATGAAACCAG+TGG | - | chr7.3:13039313-13039332 | MS.gene09884:intron | 40.0% | |
| GGTATCAAAAGGCCTTCAAT+GGG | - | chr7.3:13039853-13039872 | MS.gene09884:intron | 40.0% | |
| GGTGACATAAATGTTGTACC+TGG | - | chr7.3:13039949-13039968 | MS.gene09884:CDS | 40.0% | |
| GTGAAGTTTCAATCTGTCGT+AGG | + | chr7.3:13039146-13039165 | None:intergenic | 40.0% | |
| GTTGTTGGATGTGGAAATTC+TGG | - | chr7.3:13039514-13039533 | MS.gene09884:CDS | 40.0% | |
| TAGCGGTTATGATGTTGAAG+TGG | - | chr7.3:13039758-13039777 | MS.gene09884:CDS | 40.0% | |
| TATTCACCTGAAGCCAAGAA+GGG | + | chr7.3:13040074-13040093 | None:intergenic | 40.0% | |
| TCATCATGCTTTACCTTCCA+TGG | - | chr7.3:13039564-13039583 | MS.gene09884:CDS | 40.0% | |
| TGAACACACTCGTTGAATTG+CGG | + | chr7.3:13039289-13039308 | None:intergenic | 40.0% | |
| TGGTATCAAAAGGCCTTCAA+TGG | - | chr7.3:13039852-13039871 | MS.gene09884:intron | 40.0% | |
| TGTTGAAGTGGTTACCACTT+TGG | - | chr7.3:13039770-13039789 | MS.gene09884:CDS | 40.0% | |
| ! | AAAGCACCAATGTCCAAAAC+CGG | + | chr7.3:13039913-13039932 | None:intergenic | 40.0% |
| ! | AGTTGACTTAGATCCTCTTC+TGG | - | chr7.3:13040125-13040144 | MS.gene09884:CDS | 40.0% |
| ! | GACAACAAAGATTTTACCGG+AGG | - | chr7.3:13040208-13040227 | MS.gene09884:CDS | 40.0% |
| ! | TGGATGTGGAAATTCTGGAA+TGG | - | chr7.3:13039519-13039538 | MS.gene09884:CDS | 40.0% |
| !! | ATGATGAAACCAGTGGATTG+TGG | - | chr7.3:13039320-13039339 | MS.gene09884:intron | 40.0% |
| !! | ATGGTTCATTTTGGGTGACA+TGG | - | chr7.3:13039822-13039841 | MS.gene09884:intron | 40.0% |
| !! | GGTGAAGTTGAGCTTGTTAA+TGG | - | chr7.3:13039994-13040013 | MS.gene09884:CDS | 40.0% |
| AGCTCTTTCGAGAACAACGA+AGG | + | chr7.3:13039092-13039111 | None:intergenic | 45.0% | |
| AGCTTGTCCACAATCCAAAG+TGG | + | chr7.3:13039787-13039806 | None:intergenic | 45.0% | |
| CATGGTTGGAAGGGAAATTC+AGG | - | chr7.3:13040400-13040419 | MS.gene09884:CDS | 45.0% | |
| CCATGTGGAAATGGCATCTT+TGG | + | chr7.3:13040385-13040404 | None:intergenic | 45.0% | |
| CCATTTCCACATGGTTGGAA+GGG | - | chr7.3:13040391-13040410 | MS.gene09884:CDS | 45.0% | |
| CTGTAGGGTTCACAAAGAGA+GGG | - | chr7.3:13040431-13040450 | MS.gene09884:CDS | 45.0% | |
| GAACACACTCGTTGAATTGC+GGG | + | chr7.3:13039288-13039307 | None:intergenic | 45.0% | |
| GAACACAGAAGGAAAGACAC+CGG | - | chr7.3:13039891-13039910 | MS.gene09884:intron | 45.0% | |
| GAATTTCCCTTCCAACCATG+TGG | + | chr7.3:13040400-13040419 | None:intergenic | 45.0% | |
| GATGCAGTTGTTCTTGCTAC+CGG | - | chr7.3:13040033-13040052 | MS.gene09884:CDS | 45.0% | |
| GCAGCATGTCTTAGAGAACA+AGG | - | chr7.3:13039061-13039080 | MS.gene09884:CDS | 45.0% | |
| GCTCTTTCGAGAACAACGAA+GGG | + | chr7.3:13039091-13039110 | None:intergenic | 45.0% | |
| GGGTATTCAGGGAAATCTTC+AGG | + | chr7.3:13039208-13039227 | None:intergenic | 45.0% | |
| GTCAATGGACCTGTGATCAT+AGG | - | chr7.3:13039013-13039032 | MS.gene09884:CDS | 45.0% | |
| GTCCATTGACCCAAATGCAA+CGG | + | chr7.3:13039003-13039022 | None:intergenic | 45.0% | |
| GTGGTTACCACTTTGGATTG+TGG | - | chr7.3:13039777-13039796 | MS.gene09884:CDS | 45.0% | |
| TCAGGGAAATCTTCAGGCAT+TGG | + | chr7.3:13039202-13039221 | None:intergenic | 45.0% | |
| TTCACAAAGAGAGGGCTTTC+TGG | - | chr7.3:13040439-13040458 | MS.gene09884:CDS | 45.0% | |
| TTCCATGGTTGTTCGTAGCT+CGG | - | chr7.3:13039579-13039598 | MS.gene09884:CDS | 45.0% | |
| ! | AACACACTCAGCATTTTCGC+CGG | + | chr7.3:13039398-13039417 | None:intergenic | 45.0% |
| ! | AGATGCCATTTCCACATGGT+TGG | - | chr7.3:13040386-13040405 | MS.gene09884:CDS | 45.0% |
| ! | CCAAAGATGCCATTTCCACA+TGG | - | chr7.3:13040382-13040401 | MS.gene09884:CDS | 45.0% |
| !! | ATGAAACCAGTGGATTGTGG+AGG | - | chr7.3:13039323-13039342 | MS.gene09884:intron | 45.0% |
| !! | GGAAATCTTCAGGCATTGGA+AGG | + | chr7.3:13039198-13039217 | None:intergenic | 45.0% |
| !! | TCTTCAGGCATTGGAAGGTT+AGG | + | chr7.3:13039193-13039212 | None:intergenic | 45.0% |
| !! | TGAAACCAGTGGATTGTGGA+GGG | - | chr7.3:13039324-13039343 | MS.gene09884:intron | 45.0% |
| !!! | AAGACACCGGTTTTGGACAT+TGG | - | chr7.3:13039904-13039923 | MS.gene09884:intron | 45.0% |
| !!! | AGAAGGAAAGACACCGGTTT+TGG | - | chr7.3:13039897-13039916 | MS.gene09884:intron | 45.0% |
| !!! | GGTTTTGGACATTGGTGCTT+TGG | - | chr7.3:13039912-13039931 | MS.gene09884:intron | 45.0% |
| AACGGCGTGAGAGAAAGTCT+TGG | + | chr7.3:13038985-13039004 | None:intergenic | 50.0% | |
| ATCATAGGTGCAGGTCCATC+TGG | - | chr7.3:13039028-13039047 | MS.gene09884:CDS | 50.0% | |
| CAATGTCCCTTCTTGGCTTC+AGG | - | chr7.3:13040065-13040084 | MS.gene09884:CDS | 50.0% | |
| CCCTTCCAACCATGTGGAAA+TGG | + | chr7.3:13040394-13040413 | None:intergenic | 50.0% | |
| CTTAACCCTCCACAATCCAC+TGG | + | chr7.3:13039332-13039351 | None:intergenic | 50.0% | |
| GAGCTACGAACAACCATGGA+AGG | + | chr7.3:13039580-13039599 | None:intergenic | 50.0% | |
| GCAACGTCTATGACAAGCAG+TGG | + | chr7.3:13040545-13040564 | None:intergenic | 50.0% | |
| GCCATTTCCACATGGTTGGA+AGG | - | chr7.3:13040390-13040409 | MS.gene09884:CDS | 50.0% | |
| GCTGTAGGGTTCACAAAGAG+AGG | - | chr7.3:13040430-13040449 | MS.gene09884:CDS | 50.0% | |
| TACCGAGCTACGAACAACCA+TGG | + | chr7.3:13039584-13039603 | None:intergenic | 50.0% | |
| TCTCTCACGCCGTTGCATTT+GGG | - | chr7.3:13038991-13039010 | MS.gene09884:CDS | 50.0% | |
| TTCTCTCACGCCGTTGCATT+TGG | - | chr7.3:13038990-13039009 | MS.gene09884:CDS | 50.0% | |
| !! | AGGTCCATCTGGTCTTGCAA+CGG | - | chr7.3:13039039-13039058 | MS.gene09884:CDS | 50.0% |
| !! | AGGTGGCTTGTTGTTGCTAC+CGG | - | chr7.3:13039376-13039395 | MS.gene09884:intron | 50.0% |
| ACCGCAGCAATGTCCCTTCT+TGG | - | chr7.3:13040058-13040077 | MS.gene09884:CDS | 55.0% | |
| AGGGACATTGCTGCGGTAAC+CGG | + | chr7.3:13040055-13040074 | None:intergenic | 55.0% | |
| CGCCGTTGCATTTGGGTCAA+TGG | - | chr7.3:13038998-13039017 | MS.gene09884:CDS | 55.0% | |
| GCCAAGAAGGGACATTGCTG+CGG | + | chr7.3:13040062-13040081 | None:intergenic | 55.0% | |
| GGACCTGCACCTATGATCAC+AGG | + | chr7.3:13039025-13039044 | None:intergenic | 55.0% | |
| GGACCTGTGATCATAGGTGC+AGG | - | chr7.3:13039019-13039038 | MS.gene09884:CDS | 55.0% | |
| AGATCCTCTTCTGGCCGCTC+TGG | - | chr7.3:13040134-13040153 | MS.gene09884:CDS | 60.0% | |
| GCTGCCGTTGCAAGACCAGA+TGG | + | chr7.3:13039046-13039065 | None:intergenic | 60.0% | |
| TTAGCCAGAGCGGCCAGAAG+AGG | + | chr7.3:13040141-13040160 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 13038953 | 13040579 | 13038953 | ID=MS.gene09884 |
| chr7.3 | mRNA | 13038953 | 13040579 | 13038953 | ID=MS.gene09884.t1;Parent=MS.gene09884 |
| chr7.3 | exon | 13039932 | 13040579 | 13039932 | ID=MS.gene09884.t1.exon1;Parent=MS.gene09884.t1 |
| chr7.3 | CDS | 13039932 | 13040579 | 13039932 | ID=cds.MS.gene09884.t1;Parent=MS.gene09884.t1 |
| chr7.3 | exon | 13039446 | 13039820 | 13039446 | ID=MS.gene09884.t1.exon2;Parent=MS.gene09884.t1 |
| chr7.3 | CDS | 13039446 | 13039820 | 13039446 | ID=cds.MS.gene09884.t1;Parent=MS.gene09884.t1 |
| chr7.3 | exon | 13038953 | 13039180 | 13038953 | ID=MS.gene09884.t1.exon3;Parent=MS.gene09884.t1 |
| chr7.3 | CDS | 13038953 | 13039180 | 13038953 | ID=cds.MS.gene09884.t1;Parent=MS.gene09884.t1 |
| Gene Sequence |
| Protein sequence |
