Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021474.t1 | XP_003588544.1 | 98 | 410 | 7 | 1 | 1 | 410 | 22 | 430 | 2.20E-236 | 827.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021474.t1 | Q8VZ59 | 69.5 | 390 | 116 | 2 | 11 | 398 | 21 | 409 | 1.4e-159 | 563.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021474.t1 | G7I4C7 | 98.0 | 410 | 7 | 1 | 1 | 410 | 22 | 430 | 1.6e-236 | 827.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015953 | MS.gene021474 | PPI |
| MS.gene94810 | MS.gene021474 | PPI |
| MS.gene86173 | MS.gene021474 | PPI |
| MS.gene021474 | MS.gene064951 | PPI |
| MS.gene64265 | MS.gene021474 | PPI |
| MS.gene36879 | MS.gene021474 | PPI |
| MS.gene021474 | MS.gene44331 | PPI |
| MS.gene09884 | MS.gene021474 | PPI |
| MS.gene021474 | MS.gene06418 | PPI |
| MS.gene059027 | MS.gene021474 | PPI |
| MS.gene021474 | MS.gene53594 | PPI |
| MS.gene44332 | MS.gene021474 | PPI |
| MS.gene021474 | MS.gene038029 | PPI |
| MS.gene021474 | MS.gene061851 | PPI |
| MS.gene049295 | MS.gene021474 | PPI |
| MS.gene51580 | MS.gene021474 | PPI |
| MS.gene57685 | MS.gene021474 | PPI |
| MS.gene019484 | MS.gene021474 | PPI |
| MS.gene021474 | MS.gene054944 | PPI |
| MS.gene027681 | MS.gene021474 | PPI |
| MS.gene61665 | MS.gene021474 | PPI |
| MS.gene24021 | MS.gene021474 | PPI |
| MS.gene013322 | MS.gene021474 | PPI |
| MS.gene018590 | MS.gene021474 | PPI |
| MS.gene29205 | MS.gene021474 | PPI |
| MS.gene021474 | MS.gene60245 | PPI |
| MS.gene23537 | MS.gene021474 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021474.t1 | MTR_1g008380 | 98.049 | 410 | 7 | 1 | 1 | 410 | 22 | 430 | 0.0 | 823 |
| MS.gene021474.t1 | MTR_3g109520 | 75.495 | 404 | 98 | 1 | 1 | 403 | 18 | 421 | 0.0 | 635 |
| MS.gene021474.t1 | MTR_6g086870 | 66.093 | 407 | 131 | 4 | 1 | 402 | 1 | 405 | 0.0 | 561 |
| MS.gene021474.t1 | MTR_1g069275 | 63.158 | 399 | 144 | 3 | 13 | 410 | 16 | 412 | 0.0 | 519 |
| MS.gene021474.t1 | MTR_1g046230 | 60.051 | 393 | 153 | 2 | 14 | 403 | 16 | 407 | 9.03e-179 | 504 |
| MS.gene021474.t1 | MTR_1g011630 | 61.658 | 386 | 142 | 3 | 15 | 399 | 9 | 389 | 2.57e-176 | 498 |
| MS.gene021474.t1 | MTR_7g099330 | 58.396 | 399 | 159 | 3 | 13 | 410 | 15 | 407 | 1.04e-174 | 494 |
| MS.gene021474.t1 | MTR_7g099160 | 56.832 | 322 | 132 | 3 | 90 | 410 | 213 | 528 | 9.88e-129 | 382 |
| MS.gene021474.t1 | MTR_7g107690 | 45.040 | 373 | 198 | 3 | 23 | 393 | 9 | 376 | 1.95e-117 | 347 |
| MS.gene021474.t1 | MTR_7g107710 | 47.059 | 374 | 189 | 5 | 23 | 393 | 7 | 374 | 8.40e-115 | 340 |
| MS.gene021474.t1 | MTR_8g432640 | 43.467 | 375 | 205 | 3 | 23 | 395 | 7 | 376 | 2.21e-114 | 339 |
| MS.gene021474.t1 | MTR_5g033260 | 42.971 | 377 | 208 | 3 | 23 | 397 | 7 | 378 | 1.20e-112 | 335 |
| MS.gene021474.t1 | MTR_3g088925 | 42.967 | 391 | 213 | 5 | 23 | 410 | 8 | 391 | 6.88e-108 | 323 |
| MS.gene021474.t1 | MTR_3g088955 | 43.223 | 391 | 212 | 5 | 23 | 410 | 8 | 391 | 3.86e-107 | 322 |
| MS.gene021474.t1 | MTR_3g088945 | 43.316 | 374 | 205 | 3 | 23 | 394 | 8 | 376 | 4.10e-107 | 321 |
| MS.gene021474.t1 | MTR_4g051642 | 41.237 | 388 | 218 | 5 | 23 | 408 | 8 | 387 | 1.36e-102 | 310 |
| MS.gene021474.t1 | MTR_3g096030 | 35.227 | 176 | 89 | 2 | 23 | 197 | 7 | 158 | 1.23e-35 | 129 |
| MS.gene021474.t1 | MTR_3g437580 | 24.251 | 367 | 171 | 12 | 24 | 352 | 15 | 312 | 4.07e-14 | 73.6 |
| MS.gene021474.t1 | MTR_3g437580 | 24.251 | 367 | 171 | 12 | 24 | 352 | 15 | 312 | 1.04e-13 | 72.8 |
| MS.gene021474.t1 | MTR_8g037880 | 24.880 | 209 | 129 | 6 | 24 | 206 | 6 | 212 | 1.98e-13 | 72.0 |
| MS.gene021474.t1 | MTR_2g450310 | 25.403 | 248 | 142 | 11 | 24 | 231 | 7 | 251 | 7.28e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021474.t1 | AT5G25620 | 67.920 | 399 | 125 | 2 | 6 | 402 | 16 | 413 | 0.0 | 562 |
| MS.gene021474.t1 | AT5G25620 | 67.920 | 399 | 125 | 2 | 6 | 402 | 16 | 413 | 0.0 | 562 |
| MS.gene021474.t1 | AT4G13260 | 69.554 | 381 | 115 | 1 | 15 | 394 | 21 | 401 | 0.0 | 553 |
| MS.gene021474.t1 | AT1G04610 | 60.000 | 395 | 153 | 2 | 13 | 403 | 28 | 421 | 7.60e-179 | 505 |
| MS.gene021474.t1 | AT4G28720 | 57.039 | 412 | 172 | 3 | 1 | 408 | 4 | 414 | 2.32e-176 | 499 |
| MS.gene021474.t1 | AT1G04180 | 59.900 | 399 | 157 | 3 | 12 | 409 | 15 | 411 | 3.98e-175 | 495 |
| MS.gene021474.t1 | AT5G43890 | 59.750 | 400 | 155 | 4 | 9 | 403 | 10 | 408 | 1.62e-174 | 494 |
| MS.gene021474.t1 | AT2G33230 | 58.753 | 417 | 156 | 3 | 1 | 403 | 1 | 415 | 1.90e-173 | 491 |
| MS.gene021474.t1 | AT5G11320 | 58.793 | 381 | 151 | 2 | 17 | 397 | 12 | 386 | 1.75e-165 | 471 |
| MS.gene021474.t1 | AT4G32540 | 56.313 | 396 | 167 | 3 | 8 | 402 | 7 | 397 | 1.10e-162 | 464 |
| MS.gene021474.t1 | AT4G32540 | 56.281 | 398 | 166 | 4 | 8 | 402 | 7 | 399 | 4.70e-161 | 459 |
| MS.gene021474.t1 | AT4G13260 | 69.072 | 291 | 89 | 1 | 15 | 304 | 21 | 311 | 5.17e-146 | 417 |
| MS.gene021474.t1 | AT5G11320 | 58.716 | 327 | 130 | 1 | 17 | 343 | 12 | 333 | 9.57e-141 | 405 |
| MS.gene021474.t1 | AT4G13260 | 67.010 | 291 | 95 | 1 | 105 | 394 | 8 | 298 | 7.42e-138 | 397 |
| MS.gene021474.t1 | AT1G21430 | 48.267 | 375 | 184 | 5 | 23 | 394 | 10 | 377 | 5.85e-120 | 354 |
| MS.gene021474.t1 | AT1G48910 | 44.772 | 373 | 199 | 3 | 23 | 393 | 6 | 373 | 2.49e-116 | 345 |
| MS.gene021474.t1 | AT5G61290 | 28.125 | 224 | 114 | 7 | 24 | 207 | 18 | 234 | 7.56e-14 | 73.6 |
| MS.gene021474.t1 | AT5G07800 | 26.818 | 220 | 122 | 7 | 24 | 206 | 18 | 235 | 2.65e-13 | 71.6 |
| MS.gene021474.t1 | AT1G62560 | 22.511 | 231 | 141 | 5 | 24 | 225 | 15 | 236 | 5.80e-13 | 70.5 |
| MS.gene021474.t1 | AT1G62560 | 22.511 | 231 | 141 | 6 | 24 | 225 | 15 | 236 | 6.09e-13 | 70.5 |
| MS.gene021474.t1 | AT5G45180 | 24.148 | 352 | 200 | 14 | 24 | 334 | 15 | 340 | 9.04e-13 | 70.1 |
| MS.gene021474.t1 | AT1G12200 | 24.900 | 249 | 141 | 9 | 38 | 249 | 30 | 269 | 7.17e-12 | 67.0 |
| MS.gene021474.t1 | AT1G65860 | 21.834 | 229 | 144 | 4 | 24 | 225 | 15 | 235 | 9.01e-12 | 67.0 |
| MS.gene021474.t1 | AT1G12200 | 25.523 | 239 | 132 | 9 | 38 | 239 | 30 | 259 | 1.09e-11 | 66.6 |
Find 110 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAACAATTCATAGAGTATT+TGG | 0.149405 | 1.4:+11221924 | MS.gene021474:CDS |
| CTTCAAGTGATAGATGTTTA+TGG | 0.160401 | 1.4:+11221680 | MS.gene021474:CDS |
| AGTTTGTGAGCTTCCTTTAA+TGG | 0.176443 | 1.4:+11221867 | MS.gene021474:CDS |
| ATGCTGGGAAAATCAACTTT+TGG | 0.272060 | 1.4:+11224527 | MS.gene021474:CDS |
| GGAAGCTCACAAACTTGTTT+TGG | 0.287110 | 1.4:-11221859 | None:intergenic |
| ATGAGTTTGGTGGTAGTATT+AGG | 0.292739 | 1.4:+11222145 | MS.gene021474:CDS |
| GGTGAGGAGTGAGGGGAAGG+CGG | 0.303591 | 1.4:+11222035 | MS.gene021474:CDS |
| GTGGTTGGATGTGGAAATTC+AGG | 0.305649 | 1.4:+11222219 | MS.gene021474:CDS |
| TCTATGAATTGTTGCTTTGT+TGG | 0.308851 | 1.4:-11221916 | None:intergenic |
| CCACTAGGGAATTCCATTAA+AGG | 0.311291 | 1.4:-11221880 | None:intergenic |
| TTCAGGTATGGAAGTTTGTT+TGG | 0.318132 | 1.4:+11222236 | MS.gene021474:CDS |
| ATAACTTACCTTTAACCAAT+AGG | 0.321026 | 1.4:-11225715 | None:intergenic |
| CGGTTTGGTTCGGCCTCGGT+TGG | 0.332146 | 1.4:+11224646 | MS.gene021474:CDS |
| TAATGTACCCTATTGGTTAA+AGG | 0.336947 | 1.4:+11225707 | MS.gene021474:CDS |
| GTTTAGAGGGAAGAAAGTTT+TGG | 0.342078 | 1.4:+11222197 | MS.gene021474:CDS |
| GTGAGGAGTGAGGGGAAGGC+GGG | 0.346356 | 1.4:+11222036 | MS.gene021474:CDS |
| TTTCACCTTTCCATCCATTA+GGG | 0.348305 | 1.4:-11226458 | None:intergenic |
| AATGGATGGAAAGGTGAAAA+TGG | 0.349533 | 1.4:+11226462 | MS.gene021474:CDS |
| ATAGTAGGAGCAGGACCTTC+AGG | 0.355072 | 1.4:+11221718 | MS.gene021474:CDS |
| GATAGATGTTTATGGATTCC+AGG | 0.359227 | 1.4:+11221688 | MS.gene021474:CDS |
| TAACTTACCTTTAACCAATA+GGG | 0.359812 | 1.4:-11225714 | None:intergenic |
| GCAGCATATCTAAAACAAAA+AGG | 0.363705 | 1.4:+11221751 | MS.gene021474:CDS |
| TGTTGCTTTGTTGGATATGT+TGG | 0.373958 | 1.4:-11221907 | None:intergenic |
| CCATTAGGGAATGGCTTCCT+AGG | 0.378690 | 1.4:-11226444 | None:intergenic |
| ATTGAAGGAGTTGATGAGTT+TGG | 0.388219 | 1.4:+11222132 | MS.gene021474:CDS |
| GGTTCGGTTTGGTTCGGCCT+CGG | 0.399694 | 1.4:+11224642 | MS.gene021474:CDS |
| ACAAAAGTAATGTACCCTAT+TGG | 0.401012 | 1.4:+11225700 | MS.gene021474:CDS |
| GACGCCATCGTATTGGCAAC+TGG | 0.408426 | 1.4:+11225675 | MS.gene021474:CDS |
| GGATAAGGGTATGTTCTCTA+AGG | 0.417839 | 1.4:+11226410 | MS.gene021474:intron |
| CCTAGGAAGCCATTCCCTAA+TGG | 0.421132 | 1.4:+11226444 | MS.gene021474:CDS |
| TTCACTAAACGTGGACTACT+TGG | 0.424605 | 1.4:+11226501 | MS.gene021474:CDS |
| GAGGGTGAGGAGTGAGGGGA+AGG | 0.436723 | 1.4:+11222032 | MS.gene021474:CDS |
| GAATCTCTAACCACAATAGA+AGG | 0.439167 | 1.4:-11222282 | None:intergenic |
| CAATACAGAACGGTTCGGTT+TGG | 0.439433 | 1.4:+11224631 | MS.gene021474:CDS |
| TTCCCAGCATATCTCTTGGC+AGG | 0.440777 | 1.4:-11224514 | None:intergenic |
| CAAATTGTATAGCTTCACTA+TGG | 0.453940 | 1.4:+11221800 | MS.gene021474:CDS |
| CATCCTGCCAAGAGATATGC+TGG | 0.456200 | 1.4:+11224511 | MS.gene021474:CDS |
| GAGTGAGGGGAAGGCGGGAA+TGG | 0.461670 | 1.4:+11222041 | MS.gene021474:CDS |
| ATGGTATATGTGCAGGATAA+GGG | 0.476167 | 1.4:+11226396 | MS.gene021474:intron |
| CAGAACGGTTCGGTTTGGTT+CGG | 0.479807 | 1.4:+11224636 | MS.gene021474:CDS |
| GAATGCTGAGGCGGTTGTAC+CGG | 0.482930 | 1.4:+11222107 | MS.gene021474:CDS |
| GGTCCTGCTCCTACTATCAA+TGG | 0.486209 | 1.4:-11221712 | None:intergenic |
| AAAAGTGGTGAAGAGTTTAG+AGG | 0.487823 | 1.4:+11222183 | MS.gene021474:CDS |
| AAAATTTCGATATTAGGCCT+TGG | 0.488183 | 1.4:+11221959 | MS.gene021474:CDS |
| TGTCCATGTGGTTGCTAAAG+TGG | 0.490674 | 1.4:+11224552 | MS.gene021474:CDS |
| CTGAAGATATTGAACGGTGT+TGG | 0.492435 | 1.4:+11226550 | MS.gene021474:CDS |
| CTTGGCAATACAGAACGGTT+CGG | 0.494535 | 1.4:+11224626 | MS.gene021474:CDS |
| GAAAATGGCCTCTTTGCTGT+TGG | 0.494708 | 1.4:+11226477 | MS.gene021474:CDS |
| TGGTTACCGAGTTTGTTTGT+CGG | 0.495604 | 1.4:+11222061 | MS.gene021474:CDS |
| TGGCAAGGGCACCCACATCT+AGG | 0.496006 | 1.4:-11224709 | None:intergenic |
| AAAGTGGTGAAGAGTTTAGA+GGG | 0.496476 | 1.4:+11222184 | MS.gene021474:CDS |
| AAAGTGGTTACCCGTGCAAC+TGG | 0.496540 | 1.4:+11224568 | MS.gene021474:CDS |
| CCTTTCCATCCATTAGGGAA+TGG | 0.499153 | 1.4:-11226453 | None:intergenic |
| CGGTGGTTGATAGTTGCAAC+CGG | 0.501452 | 1.4:+11222081 | MS.gene021474:CDS |
| GATCTTTCTAGTATTAAACT+TGG | 0.510703 | 1.4:-11221778 | None:intergenic |
| GGTTTGGTTCGGCCTCGGTT+GGG | 0.511085 | 1.4:+11224647 | MS.gene021474:CDS |
| TCATCAACTCCTTCAATCTC+CGG | 0.525251 | 1.4:-11222126 | None:intergenic |
| GCTGAGTTTGATGCTACACT+TGG | 0.526718 | 1.4:+11222003 | MS.gene021474:CDS |
| TTTGGAGGGTGAGGAGTGAG+GGG | 0.529144 | 1.4:+11222028 | MS.gene021474:CDS |
| GGTATGTTCTCTAAGGAAGA+TGG | 0.529812 | 1.4:+11226417 | MS.gene021474:CDS |
| ATTCCAGGTCCATTGATAGT+AGG | 0.534394 | 1.4:+11221703 | MS.gene021474:CDS |
| AACCGCCTCAGCATTCTCTC+CGG | 0.535999 | 1.4:-11222100 | None:intergenic |
| CATACTAGTTTGTATAAAAG+TGG | 0.538558 | 1.4:+11222168 | MS.gene021474:CDS |
| ATGTAATCCACCAGTTGCAC+GGG | 0.546866 | 1.4:-11224578 | None:intergenic |
| TGATGCTGCTCCTTCTATTG+TGG | 0.549061 | 1.4:+11222272 | MS.gene021474:CDS |
| TGGACTACTTGGTGCATCCA+TGG | 0.549422 | 1.4:+11226512 | MS.gene021474:CDS |
| ACATCCTTCTCACTGTGTCA+TGG | 0.550548 | 1.4:+11224597 | MS.gene021474:CDS |
| TCCCTCGTTCAGGTACGTCC+AGG | 0.553289 | 1.4:+11225594 | MS.gene021474:intron |
| GGATATGTTGGAAAACCACT+AGG | 0.555382 | 1.4:-11221895 | None:intergenic |
| GATTAAAAGAGGAGACATCA+AGG | 0.563954 | 1.4:+11224733 | MS.gene021474:CDS |
| CCATTCCCTAATGGATGGAA+AGG | 0.565023 | 1.4:+11226453 | MS.gene021474:CDS |
| GCCCTTGCCAAGATTAAAAG+AGG | 0.565947 | 1.4:+11224722 | MS.gene021474:CDS |
| CCTTTAATGGAATTCCCTAG+TGG | 0.567347 | 1.4:+11221880 | MS.gene021474:CDS |
| GCGGTTGTACCGGAGATTGA+AGG | 0.568267 | 1.4:+11222117 | MS.gene021474:CDS |
| CAGGCATCAAGAGGTTAAAA+CGG | 0.572356 | 1.4:+11225613 | MS.gene021474:CDS |
| GGAAGCCATTCCCTAATGGA+TGG | 0.574345 | 1.4:+11226448 | MS.gene021474:CDS |
| GCTGTTGGTTTCACTAAACG+TGG | 0.576427 | 1.4:+11226492 | MS.gene021474:CDS |
| GAAGGAGTTGATGAGTTTGG+TGG | 0.576519 | 1.4:+11222135 | MS.gene021474:CDS |
| AAAGACACCGGTCCTAGATG+TGG | 0.578940 | 1.4:+11224697 | MS.gene021474:CDS |
| GGTCCATTGATAGTAGGAGC+AGG | 0.584095 | 1.4:+11221709 | MS.gene021474:CDS |
| GATGTAATCCACCAGTTGCA+CGG | 0.587259 | 1.4:-11224579 | None:intergenic |
| GCTGCTACTGCTAGTCCTGA+AGG | 0.587967 | 1.4:-11221733 | None:intergenic |
| GTGGTTACCCGTGCAACTGG+TGG | 0.590830 | 1.4:+11224571 | MS.gene021474:CDS |
| AGGGCACCCACATCTAGGAC+CGG | 0.591712 | 1.4:-11224704 | None:intergenic |
| TACAGAGTGGAATTTGCTGA+TGG | 0.592027 | 1.4:+11225636 | MS.gene021474:CDS |
| CTAAGGAAGATGGATACCCT+AGG | 0.600641 | 1.4:+11226427 | MS.gene021474:CDS |
| CATTAGGGAATGGCTTCCTA+GGG | 0.603860 | 1.4:-11226443 | None:intergenic |
| TGAACGGTGTTGGAAAGTTG+AGG | 0.604949 | 1.4:+11226560 | MS.gene021474:CDS |
| GCTCCTACTATCAATGGACC+TGG | 0.607612 | 1.4:-11221706 | None:intergenic |
| TGGATGTGGAAATTCAGGTA+TGG | 0.622494 | 1.4:+11222224 | MS.gene021474:CDS |
| ACTGTGTCATGGTTAATGCT+TGG | 0.622906 | 1.4:+11224608 | MS.gene021474:CDS |
| AGGTACGTCCAGGCATCAAG+AGG | 0.629400 | 1.4:+11225604 | MS.gene021474:intron |
| TAATGCTTGGCAATACAGAA+CGG | 0.631117 | 1.4:+11224621 | MS.gene021474:CDS |
| TAGTGAAACCAACAGCAAAG+AGG | 0.634282 | 1.4:-11226485 | None:intergenic |
| CAACCACCGACAAACAAACT+CGG | 0.635536 | 1.4:-11222067 | None:intergenic |
| AAGACACCGGTCCTAGATGT+GGG | 0.638855 | 1.4:+11224698 | MS.gene021474:CDS |
| ATGAAGACGAAGACGATCGT+AGG | 0.641325 | 1.4:-11221833 | None:intergenic |
| GTAACCAGTTGCCAATACGA+TGG | 0.642598 | 1.4:-11225679 | None:intergenic |
| TTACCGAGTTTGTTTGTCGG+TGG | 0.653194 | 1.4:+11222064 | MS.gene021474:CDS |
| TTAACCATGACACAGTGAGA+AGG | 0.654806 | 1.4:-11224601 | None:intergenic |
| GAGGTTAAAACGGTACAGAG+TGG | 0.654866 | 1.4:+11225623 | MS.gene021474:CDS |
| ATATAGCTGAAGATATTGAA+CGG | 0.658373 | 1.4:+11226544 | MS.gene021474:CDS |
| GATATGTTGGAAAACCACTA+GGG | 0.658620 | 1.4:-11221894 | None:intergenic |
| AACCGGAGAGAATGCTGAGG+CGG | 0.661182 | 1.4:+11222098 | MS.gene021474:CDS |
| TAACCACTTTAGCAACCACA+TGG | 0.668567 | 1.4:-11224555 | None:intergenic |
| AAAACTGTCTGGAAAGACAC+CGG | 0.678715 | 1.4:+11224685 | MS.gene021474:CDS |
| AGTTCTAGAGGACCCAACCG+AGG | 0.681521 | 1.4:-11224659 | None:intergenic |
| ATCCTGCCAAGAGATATGCT+GGG | 0.697559 | 1.4:+11224512 | MS.gene021474:CDS |
| ATAACTGTCTCATTGAACCA+AGG | 0.702457 | 1.4:-11221976 | None:intergenic |
| TGCAACCGGAGAGAATGCTG+AGG | 0.737919 | 1.4:+11222095 | MS.gene021474:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAATTATA+CGG | + | chr1.4:11225969-11225988 | MS.gene021474:intron | 0.0% |
| !! | AAAAAAAAAAAAAGAGAAAA+AGG | - | chr1.4:11223137-11223156 | None:intergenic | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr1.4:11224351-11224370 | None:intergenic | 10.0% |
| !! | ACATTATAAAATATTTACAT+TGG | + | chr1.4:11223725-11223744 | MS.gene021474:intron | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr1.4:11224352-11224371 | None:intergenic | 10.0% |
| !!! | AAAAAAAGTGTATAAATAAA+GGG | - | chr1.4:11224239-11224258 | None:intergenic | 10.0% |
| !!! | AGATATTTTTAATAAATTGA+CGG | + | chr1.4:11225294-11225313 | MS.gene021474:intron | 10.0% |
| !!! | TAAAAAAAGTGTATAAATAA+AGG | - | chr1.4:11224240-11224259 | None:intergenic | 10.0% |
| !!! | TATAAAGTTGTTTTTATTTT+TGG | + | chr1.4:11222524-11222543 | MS.gene021474:intron | 10.0% |
| !! | AAAATTCTAAACAATGAAAA+CGG | + | chr1.4:11225764-11225783 | MS.gene021474:intron | 15.0% |
| !! | AATAATACAAATAACTGAAA+TGG | + | chr1.4:11226377-11226396 | MS.gene021474:intron | 15.0% |
| !! | AATCAAATCATACTTTATTA+AGG | + | chr1.4:11224976-11224995 | MS.gene021474:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr1.4:11224350-11224369 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr1.4:11224174-11224193 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr1.4:11224175-11224194 | None:intergenic | 15.0% |
| !! | TCTAATATAGCATATAAAAT+AGG | + | chr1.4:11222793-11222812 | MS.gene021474:intron | 15.0% |
| !!! | AAAAAAGTGTATAAATAAAG+GGG | - | chr1.4:11224238-11224257 | None:intergenic | 15.0% |
| !!! | AATGAAAATATGTTTTTACT+TGG | + | chr1.4:11226003-11226022 | MS.gene021474:intron | 15.0% |
| !!! | ATTCAAAAATACTTTTGAAA+TGG | - | chr1.4:11222876-11222895 | None:intergenic | 15.0% |
| !!! | GTAACTAATTTTTTTTAAGA+AGG | - | chr1.4:11222698-11222717 | None:intergenic | 15.0% |
| !!! | TGCTATTTTTCATATTATTA+AGG | - | chr1.4:11223280-11223299 | None:intergenic | 15.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr1.4:11224215-11224234 | None:intergenic | 20.0% |
| !! | AATTTCCATGTTTCTTAATT+AGG | - | chr1.4:11222666-11222685 | None:intergenic | 20.0% |
| !! | AGAAAGAAAAACAAAGTAAA+AGG | - | chr1.4:11222331-11222350 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr1.4:11224142-11224161 | None:intergenic | 20.0% |
| !! | ATAGTAGTTAAATCTTTAGT+AGG | + | chr1.4:11225365-11225384 | MS.gene021474:intron | 20.0% |
| !! | ATCAAAAATCTTAAGATCTT+AGG | - | chr1.4:11223798-11223817 | None:intergenic | 20.0% |
| !! | ATTCCAAAAATTTCGATATT+AGG | + | chr1.4:11221953-11221972 | MS.gene021474:CDS | 20.0% |
| !! | CACAATCAAACAATTATTAT+AGG | + | chr1.4:11225233-11225252 | MS.gene021474:intron | 20.0% |
| !! | GAAAAATAGCACTTAAATTA+TGG | + | chr1.4:11223289-11223308 | MS.gene021474:intron | 20.0% |
| !! | GTTGAAAATCTTTATGATAA+AGG | + | chr1.4:11223587-11223606 | MS.gene021474:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr1.4:11224141-11224160 | None:intergenic | 20.0% |
| !! | TATTTCGAATAAGGAAAATA+CGG | + | chr1.4:11226266-11226285 | MS.gene021474:intron | 20.0% |
| !!! | AAGCTTTTTTATTTCGAATA+AGG | + | chr1.4:11226257-11226276 | MS.gene021474:intron | 20.0% |
| !!! | AGTACTCTTTTTATAGAAAA+AGG | + | chr1.4:11224418-11224437 | MS.gene021474:intron | 20.0% |
| !!! | AGTATGTTTTGAATAAAAAC+AGG | - | chr1.4:11222570-11222589 | None:intergenic | 20.0% |
| !!! | ATATTGAATTTTATGCTACA+AGG | - | chr1.4:11222628-11222647 | None:intergenic | 20.0% |
| !!! | ATCTAACACTTAAAGATTTT+GGG | + | chr1.4:11223433-11223452 | MS.gene021474:intron | 20.0% |
| !!! | ATTTTCAAAATTCAGATAGA+TGG | - | chr1.4:11226333-11226352 | None:intergenic | 20.0% |
| !!! | ATTTTTAAAGAGTGCATAAT+GGG | - | chr1.4:11225744-11225763 | None:intergenic | 20.0% |
| !!! | CATGATATTTCACTTTTTTT+GGG | + | chr1.4:11222928-11222947 | MS.gene021474:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr1.4:11224105-11224124 | None:intergenic | 20.0% |
| !!! | GTATGTTTTGAATAAAAACA+GGG | - | chr1.4:11222569-11222588 | None:intergenic | 20.0% |
| !!! | TATCTAACACTTAAAGATTT+TGG | + | chr1.4:11223432-11223451 | MS.gene021474:intron | 20.0% |
| !!! | TATTTTTAAAGAGTGCATAA+TGG | - | chr1.4:11225745-11225764 | None:intergenic | 20.0% |
| !!! | TTCGACATTAGTTTTAAATA+AGG | + | chr1.4:11225191-11225210 | MS.gene021474:intron | 20.0% |
| ! | AAAACAAAACACAACTTTGA+AGG | - | chr1.4:11222772-11222791 | None:intergenic | 25.0% |
| ! | AAAGTGACACTAAAATCTTA+AGG | - | chr1.4:11224794-11224813 | None:intergenic | 25.0% |
| ! | AAATAGCACTTAAATTATGG+CGG | + | chr1.4:11223292-11223311 | MS.gene021474:intron | 25.0% |
| ! | AGTTGTATTGAAAAGTGAAA+TGG | - | chr1.4:11224022-11224041 | None:intergenic | 25.0% |
| ! | ATAACTTACCTTTAACCAAT+AGG | - | chr1.4:11225718-11225737 | None:intergenic | 25.0% |
| ! | ATATAGCTGAAGATATTGAA+CGG | + | chr1.4:11226544-11226563 | MS.gene021474:CDS | 25.0% |
| ! | ATCTTTCAAACAAGAAAGAA+AGG | - | chr1.4:11224932-11224951 | None:intergenic | 25.0% |
| ! | CAAAGTAGGTCAATTAAATT+GGG | + | chr1.4:11224275-11224294 | MS.gene021474:intron | 25.0% |
| ! | CTCTACTTGTAATAATACAA+GGG | - | chr1.4:11223054-11223073 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr1.4:11224216-11224235 | None:intergenic | 25.0% |
| ! | GAGTTATATTGTATTGAGAA+TGG | - | chr1.4:11224049-11224068 | None:intergenic | 25.0% |
| ! | GTATTCATAATTTCATGTAG+TGG | + | chr1.4:11222820-11222839 | MS.gene021474:intron | 25.0% |
| ! | GTTGTATTGAAAAGTGAAAT+GGG | - | chr1.4:11224021-11224040 | None:intergenic | 25.0% |
| ! | TAACTTACCTTTAACCAATA+GGG | - | chr1.4:11225717-11225736 | None:intergenic | 25.0% |
| ! | TAAGAAACATGGAAATTTGT+CGG | + | chr1.4:11222669-11222688 | MS.gene021474:intron | 25.0% |
| ! | TATCTCCTAATTAAGAAACA+TGG | + | chr1.4:11222658-11222677 | MS.gene021474:intron | 25.0% |
| ! | TGAATTTACTTCAATATGTG+TGG | - | chr1.4:11225137-11225156 | None:intergenic | 25.0% |
| !! | AAAGATTTTCCATGATCATT+AGG | + | chr1.4:11224946-11224965 | MS.gene021474:intron | 25.0% |
| !! | CATACTAGTTTGTATAAAAG+TGG | + | chr1.4:11222168-11222187 | MS.gene021474:CDS | 25.0% |
| !! | CGAAAACTTTGAAAAAAGAT+TGG | + | chr1.4:11226164-11226183 | MS.gene021474:intron | 25.0% |
| !! | GATCTTTCTAGTATTAAACT+TGG | - | chr1.4:11221781-11221800 | None:intergenic | 25.0% |
| !! | GTCCAAATAAACTTATTTCT+GGG | - | chr1.4:11224844-11224863 | None:intergenic | 25.0% |
| !! | TCATAAAGATTTTCAACACA+AGG | - | chr1.4:11223584-11223603 | None:intergenic | 25.0% |
| !!! | ATGCTGATTTTCATAATCAT+AGG | - | chr1.4:11222491-11222510 | None:intergenic | 25.0% |
| !!! | CGACATAAAATGTTTTAACA+AGG | + | chr1.4:11225167-11225186 | MS.gene021474:intron | 25.0% |
| !!! | CTTTTTTAACTTTTCCGTTT+CGG | + | chr1.4:11222353-11222372 | MS.gene021474:intron | 25.0% |
| !!! | GCATGATATTTCACTTTTTT+TGG | + | chr1.4:11222927-11222946 | MS.gene021474:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr1.4:11224106-11224125 | None:intergenic | 25.0% |
| !!! | GTTTTTTCCTTTCACTTTTT+TGG | + | chr1.4:11223163-11223182 | MS.gene021474:intron | 25.0% |
| !!! | TATTTCCCTATTAGTCTTAA+TGG | + | chr1.4:11225111-11225130 | MS.gene021474:intron | 25.0% |
| !!! | TCCAAATAAACTTATTTCTG+GGG | - | chr1.4:11224843-11224862 | None:intergenic | 25.0% |
| !!! | TGATGATACTTTTTCTCTAT+TGG | + | chr1.4:11224472-11224491 | MS.gene021474:intron | 25.0% |
| AAAAAGGTAAGAGCTTATGT+GGG | - | chr1.4:11223121-11223140 | None:intergenic | 30.0% | |
| AAAATTTCGATATTAGGCCT+TGG | + | chr1.4:11221959-11221978 | MS.gene021474:CDS | 30.0% | |
| AAGAAACATGGAAATTTGTC+GGG | + | chr1.4:11222670-11222689 | MS.gene021474:intron | 30.0% | |
| AATAGTAGTATCAGAGCATA+TGG | + | chr1.4:11223535-11223554 | MS.gene021474:intron | 30.0% | |
| ACAAAAGTAATGTACCCTAT+TGG | + | chr1.4:11225700-11225719 | MS.gene021474:CDS | 30.0% | |
| ACCCCAGAAATAAGTTTATT+TGG | + | chr1.4:11224839-11224858 | MS.gene021474:intron | 30.0% | |
| AGTAAATGAGTCAGATATTC+CGG | - | chr1.4:11223972-11223991 | None:intergenic | 30.0% | |
| ATCCGTGTGAAAAATCAAAT+TGG | + | chr1.4:11224372-11224391 | MS.gene021474:intron | 30.0% | |
| CAAAATTCAGATAGATGGAT+AGG | - | chr1.4:11226328-11226347 | None:intergenic | 30.0% | |
| CAAATTGTATAGCTTCACTA+TGG | + | chr1.4:11221800-11221819 | MS.gene021474:CDS | 30.0% | |
| CCAAAGTAGGTCAATTAAAT+TGG | + | chr1.4:11224274-11224293 | MS.gene021474:intron | 30.0% | |
| CCAATTTAATTGACCTACTT+TGG | - | chr1.4:11224277-11224296 | None:intergenic | 30.0% | |
| CGTCCAAATAAACTTATTTC+TGG | - | chr1.4:11224845-11224864 | None:intergenic | 30.0% | |
| CTAGACTTAAAACTTAGTTG+TGG | - | chr1.4:11223234-11223253 | None:intergenic | 30.0% | |
| CTTCAAGTGATAGATGTTTA+TGG | + | chr1.4:11221680-11221699 | MS.gene021474:CDS | 30.0% | |
| GAAAGTGGAATATACTGTAT+TGG | - | chr1.4:11224328-11224347 | None:intergenic | 30.0% | |
| GCTCTACTTGTAATAATACA+AGG | - | chr1.4:11223055-11223074 | None:intergenic | 30.0% | |
| GTATTATTACAAGTAGAGCA+TGG | + | chr1.4:11223056-11223075 | MS.gene021474:intron | 30.0% | |
| TCCGTGTGAAAAATCAAATT+GGG | + | chr1.4:11224373-11224392 | MS.gene021474:intron | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr1.4:11224231-11224250 | None:intergenic | 30.0% | |
| ! | AGGCCTAATATCGAAATTTT+TGG | - | chr1.4:11221959-11221978 | None:intergenic | 30.0% |
| ! | CTTTTGCAAAGAAACATCAT+GGG | - | chr1.4:11223020-11223039 | None:intergenic | 30.0% |
| ! | GCAACAATTCATAGAGTATT+TGG | + | chr1.4:11221924-11221943 | MS.gene021474:CDS | 30.0% |
| ! | GCAGCATATCTAAAACAAAA+AGG | + | chr1.4:11221751-11221770 | MS.gene021474:CDS | 30.0% |
| ! | TAATGTACCCTATTGGTTAA+AGG | + | chr1.4:11225707-11225726 | MS.gene021474:CDS | 30.0% |
| ! | TCTTTTGCAAAGAAACATCA+TGG | - | chr1.4:11223021-11223040 | None:intergenic | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | - | chr1.4:11224128-11224147 | None:intergenic | 30.0% |
| !! | AAAGATTTTGGGTGAAGATA+TGG | + | chr1.4:11223444-11223463 | MS.gene021474:intron | 30.0% |
| !! | ACCCAATTTGATTTTTCACA+CGG | - | chr1.4:11224377-11224396 | None:intergenic | 30.0% |
| !! | AGAAAATGGGTTAGTTATTC+CGG | - | chr1.4:11224092-11224111 | None:intergenic | 30.0% |
| !! | TCTATGAATTGTTGCTTTGT+TGG | - | chr1.4:11221919-11221938 | None:intergenic | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | - | chr1.4:11224007-11224026 | None:intergenic | 30.0% |
| !! | TGTTTTGAATAAAAACAGGG+AGG | - | chr1.4:11222566-11222585 | None:intergenic | 30.0% |
| !! | TTCTCTATTGGTTTGATTGA+AGG | + | chr1.4:11224484-11224503 | MS.gene021474:intron | 30.0% |
| !!! | AGCTATATTTTTTGCATCCA+TGG | - | chr1.4:11226532-11226551 | None:intergenic | 30.0% |
| !!! | CTAAGTTTTAAGTCTAGTCA+TGG | + | chr1.4:11223237-11223256 | MS.gene021474:intron | 30.0% |
| AAAAGTGGTGAAGAGTTTAG+AGG | + | chr1.4:11222183-11222202 | MS.gene021474:CDS | 35.0% | |
| AAACATCATGGGAAGGAAAA+AGG | - | chr1.4:11223009-11223028 | None:intergenic | 35.0% | |
| AAAGTGGTGAAGAGTTTAGA+GGG | + | chr1.4:11222184-11222203 | MS.gene021474:CDS | 35.0% | |
| AACACAATTAAGGCCTATCA+AGG | + | chr1.4:11223084-11223103 | MS.gene021474:intron | 35.0% | |
| AACTGAAATGGTATATGTGC+AGG | + | chr1.4:11226389-11226408 | MS.gene021474:intron | 35.0% | |
| AATGGATGGAAAGGTGAAAA+TGG | + | chr1.4:11226462-11226481 | MS.gene021474:CDS | 35.0% | |
| AATGGTATATGTGCAGGATA+AGG | + | chr1.4:11226395-11226414 | MS.gene021474:intron | 35.0% | |
| ACACAATTAAGGCCTATCAA+GGG | + | chr1.4:11223085-11223104 | MS.gene021474:intron | 35.0% | |
| AGTTTGTGAGCTTCCTTTAA+TGG | + | chr1.4:11221867-11221886 | MS.gene021474:CDS | 35.0% | |
| ATAACTGTCTCATTGAACCA+AGG | - | chr1.4:11221979-11221998 | None:intergenic | 35.0% | |
| ATCCTATGTCCTCATTGTTA+CGG | - | chr1.4:11225259-11225278 | None:intergenic | 35.0% | |
| ATGGTATATGTGCAGGATAA+GGG | + | chr1.4:11226396-11226415 | MS.gene021474:intron | 35.0% | |
| ATTGTGCAAATTCATGTGTG+TGG | + | chr1.4:11223824-11223843 | MS.gene021474:intron | 35.0% | |
| CAAATTGGGTCAGATATTCT+GGG | + | chr1.4:11224387-11224406 | MS.gene021474:intron | 35.0% | |
| CCAAACACCAAAAAAGTGAA+AGG | - | chr1.4:11223173-11223192 | None:intergenic | 35.0% | |
| CTAGAACTCAAAAAACTGTC+TGG | + | chr1.4:11224674-11224693 | MS.gene021474:CDS | 35.0% | |
| GAAAAAGGTAAGAGCTTATG+TGG | - | chr1.4:11223122-11223141 | None:intergenic | 35.0% | |
| GAATCTCTAACCACAATAGA+AGG | - | chr1.4:11222285-11222304 | None:intergenic | 35.0% | |
| GAATGAAGCTGTTATGTGAT+GGG | + | chr1.4:11223192-11223211 | MS.gene021474:intron | 35.0% | |
| GATAGATGTTTATGGATTCC+AGG | + | chr1.4:11221688-11221707 | MS.gene021474:CDS | 35.0% | |
| GATATGTTGGAAAACCACTA+GGG | - | chr1.4:11221897-11221916 | None:intergenic | 35.0% | |
| GATTAAAAGAGGAGACATCA+AGG | + | chr1.4:11224733-11224752 | MS.gene021474:CDS | 35.0% | |
| GGTATACACTTGAGTTCAAT+CGG | + | chr1.4:11225848-11225867 | MS.gene021474:intron | 35.0% | |
| GTAAATGAGTCAGATATTCC+GGG | - | chr1.4:11223971-11223990 | None:intergenic | 35.0% | |
| GTAGGTCAATTAAATTGGGA+CGG | + | chr1.4:11224279-11224298 | MS.gene021474:intron | 35.0% | |
| TAATGCTTGGCAATACAGAA+CGG | + | chr1.4:11224621-11224640 | MS.gene021474:CDS | 35.0% | |
| TAATTTCATGTAGTGGCTAC+AGG | + | chr1.4:11222827-11222846 | MS.gene021474:intron | 35.0% | |
| TACTACTATTGAGTCATGAG+AGG | - | chr1.4:11223525-11223544 | None:intergenic | 35.0% | |
| TAGTATCAGAGCATATGGTT+TGG | + | chr1.4:11223540-11223559 | MS.gene021474:intron | 35.0% | |
| TATTATAGGCCGTAACAATG+AGG | + | chr1.4:11225247-11225266 | MS.gene021474:intron | 35.0% | |
| TCAAATTGGGTCAGATATTC+TGG | + | chr1.4:11224386-11224405 | MS.gene021474:intron | 35.0% | |
| TCATGATGCGATTGTGATTA+AGG | - | chr1.4:11223324-11223343 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr1.4:11224261-11224280 | MS.gene021474:intron | 35.0% | |
| TGTGGCCATTAAGACTAATA+GGG | - | chr1.4:11225119-11225138 | None:intergenic | 35.0% | |
| TTGATAGGCCTTAATTGTGT+TGG | - | chr1.4:11223085-11223104 | None:intergenic | 35.0% | |
| TTTAAGTCTAGTCATGGTTG+AGG | + | chr1.4:11223243-11223262 | MS.gene021474:intron | 35.0% | |
| TTTCACCTTTCCATCCATTA+GGG | - | chr1.4:11226461-11226480 | None:intergenic | 35.0% | |
| ! | AGATTTTCAACACAAGGAGA+AGG | - | chr1.4:11223578-11223597 | None:intergenic | 35.0% |
| ! | ATGAGTTTGGTGGTAGTATT+AGG | + | chr1.4:11222145-11222164 | MS.gene021474:CDS | 35.0% |
| ! | ATGCTGGGAAAATCAACTTT+TGG | + | chr1.4:11224527-11224546 | MS.gene021474:CDS | 35.0% |
| ! | ATGTTACTACAACTGACTCA+AGG | - | chr1.4:11223900-11223919 | None:intergenic | 35.0% |
| ! | GATGTCTCCTCTTTTAATCT+TGG | - | chr1.4:11224732-11224751 | None:intergenic | 35.0% |
| ! | GATTTTCAACACAAGGAGAA+GGG | - | chr1.4:11223577-11223596 | None:intergenic | 35.0% |
| ! | GTTTAGAGGGAAGAAAGTTT+TGG | + | chr1.4:11222197-11222216 | MS.gene021474:CDS | 35.0% |
| ! | TAACTTTTCCGTTTCGGAAA+TGG | + | chr1.4:11222359-11222378 | MS.gene021474:intron | 35.0% |
| ! | TCCTCTTTTAATCTTGGCAA+GGG | - | chr1.4:11224726-11224745 | None:intergenic | 35.0% |
| ! | TGCTGGGAAAATCAACTTTT+GGG | + | chr1.4:11224528-11224547 | MS.gene021474:CDS | 35.0% |
| ! | TTCAGGTATGGAAGTTTGTT+TGG | + | chr1.4:11222236-11222255 | MS.gene021474:CDS | 35.0% |
| ! | TTTTCACCTTTCCATCCATT+AGG | - | chr1.4:11226462-11226481 | None:intergenic | 35.0% |
| !! | ATTGAAGGAGTTGATGAGTT+TGG | + | chr1.4:11222132-11222151 | MS.gene021474:CDS | 35.0% |
| !! | GAAAATGGGTTAGTTATTCC+GGG | - | chr1.4:11224091-11224110 | None:intergenic | 35.0% |
| !! | TGTTGCTTTGTTGGATATGT+TGG | - | chr1.4:11221910-11221929 | None:intergenic | 35.0% |
| !! | TTGAAAGCACCTAATGATCA+TGG | - | chr1.4:11224958-11224977 | None:intergenic | 35.0% |
| !! | TTGATGCTACACTTGGTTTT+TGG | + | chr1.4:11222010-11222029 | MS.gene021474:CDS | 35.0% |
| !!! | CCTTTCACTTTTTTGGTGTT+TGG | + | chr1.4:11223170-11223189 | MS.gene021474:intron | 35.0% |
| !!! | GACAGTTTTTTGAGTTCTAG+AGG | - | chr1.4:11224674-11224693 | None:intergenic | 35.0% |
| AAAACTGTCTGGAAAGACAC+CGG | + | chr1.4:11224685-11224704 | MS.gene021474:CDS | 40.0% | |
| ACTGTGTCATGGTTAATGCT+TGG | + | chr1.4:11224608-11224627 | MS.gene021474:CDS | 40.0% | |
| AGATAGATGGATAGGCTCAT+AGG | - | chr1.4:11226320-11226339 | None:intergenic | 40.0% | |
| ATAGGCCTTAATTGTGTTGG+TGG | - | chr1.4:11223082-11223101 | None:intergenic | 40.0% | |
| ATCATGGGAAGGAAAAAGGA+GGG | - | chr1.4:11223005-11223024 | None:intergenic | 40.0% | |
| CAGGCATCAAGAGGTTAAAA+CGG | + | chr1.4:11225613-11225632 | MS.gene021474:CDS | 40.0% | |
| CCACTAGGGAATTCCATTAA+AGG | - | chr1.4:11221883-11221902 | None:intergenic | 40.0% | |
| CCTTTAATGGAATTCCCTAG+TGG | + | chr1.4:11221880-11221899 | MS.gene021474:CDS | 40.0% | |
| CTGAAGATATTGAACGGTGT+TGG | + | chr1.4:11226550-11226569 | MS.gene021474:CDS | 40.0% | |
| GCACTAACGACATGTGAAAA+AGG | + | chr1.4:11225827-11225846 | MS.gene021474:intron | 40.0% | |
| GGAATGAAGCTGTTATGTGA+TGG | + | chr1.4:11223191-11223210 | MS.gene021474:intron | 40.0% | |
| GGATATGTTGGAAAACCACT+AGG | - | chr1.4:11221898-11221917 | None:intergenic | 40.0% | |
| GTCAATTAAATTGGGACGGA+GGG | + | chr1.4:11224283-11224302 | MS.gene021474:intron | 40.0% | |
| GTGTGGCCATTAAGACTAAT+AGG | - | chr1.4:11225120-11225139 | None:intergenic | 40.0% | |
| GTTGCGAGAATCGTTAGATT+TGG | + | chr1.4:11222402-11222421 | MS.gene021474:intron | 40.0% | |
| TAACCACTTTAGCAACCACA+TGG | - | chr1.4:11224558-11224577 | None:intergenic | 40.0% | |
| TAGTGAAACCAACAGCAAAG+AGG | - | chr1.4:11226488-11226507 | None:intergenic | 40.0% | |
| TCATCAACTCCTTCAATCTC+CGG | - | chr1.4:11222129-11222148 | None:intergenic | 40.0% | |
| TGCAAAGAAACATCATGGGA+AGG | - | chr1.4:11223016-11223035 | None:intergenic | 40.0% | |
| TGGATGTGGAAATTCAGGTA+TGG | + | chr1.4:11222224-11222243 | MS.gene021474:CDS | 40.0% | |
| TGTTGACATTGTGTCAACAG+TGG | + | chr1.4:11223627-11223646 | MS.gene021474:intron | 40.0% | |
| TTAACCATGACACAGTGAGA+AGG | - | chr1.4:11224604-11224623 | None:intergenic | 40.0% | |
| ! | AGAGCATATGGTTTGGCTAA+AGG | + | chr1.4:11223547-11223566 | MS.gene021474:intron | 40.0% |
| ! | ATTCCAGGTCCATTGATAGT+AGG | + | chr1.4:11221703-11221722 | MS.gene021474:CDS | 40.0% |
| ! | CTCCTCTTTTAATCTTGGCA+AGG | - | chr1.4:11224727-11224746 | None:intergenic | 40.0% |
| ! | GATTTTCCCAGCATATCTCT+TGG | - | chr1.4:11224521-11224540 | None:intergenic | 40.0% |
| ! | GGATAAGGGTATGTTCTCTA+AGG | + | chr1.4:11226410-11226429 | MS.gene021474:intron | 40.0% |
| ! | GGTATGTTCTCTAAGGAAGA+TGG | + | chr1.4:11226417-11226436 | MS.gene021474:CDS | 40.0% |
| ! | TGGTTACCGAGTTTGTTTGT+CGG | + | chr1.4:11222061-11222080 | MS.gene021474:CDS | 40.0% |
| ! | TTCACTAAACGTGGACTACT+TGG | + | chr1.4:11226501-11226520 | MS.gene021474:CDS | 40.0% |
| !! | AAAGTTTTGGTGGTTGGATG+TGG | + | chr1.4:11222210-11222229 | MS.gene021474:CDS | 40.0% |
| !! | ATGCTACACTTGGTTTTTGG+AGG | + | chr1.4:11222013-11222032 | MS.gene021474:CDS | 40.0% |
| !! | GAATTTTGACGCCATCGTAT+TGG | + | chr1.4:11225668-11225687 | MS.gene021474:CDS | 40.0% |
| !! | GGAAGCTCACAAACTTGTTT+TGG | - | chr1.4:11221862-11221881 | None:intergenic | 40.0% |
| !! | TAGAGGGAAGAAAGTTTTGG+TGG | + | chr1.4:11222200-11222219 | MS.gene021474:CDS | 40.0% |
| !! | TGCTACACTTGGTTTTTGGA+GGG | + | chr1.4:11222014-11222033 | MS.gene021474:CDS | 40.0% |
| AAGGAGGGGAAAAAAGCAAC+TGG | - | chr1.4:11222990-11223009 | None:intergenic | 45.0% | |
| AAGGTAAGAGCTTATGTGGG+AGG | - | chr1.4:11223118-11223137 | None:intergenic | 45.0% | |
| AATTAATACTCCCTCCGTCC+CGG | + | chr1.4:11224070-11224089 | MS.gene021474:intron | 45.0% | |
| ACATCCTTCTCACTGTGTCA+TGG | + | chr1.4:11224597-11224616 | MS.gene021474:CDS | 45.0% | |
| ACTTAGTTGTGGAGATGCTG+TGG | - | chr1.4:11223223-11223242 | None:intergenic | 45.0% | |
| AGGAGGGGAAAAAAGCAACT+GGG | - | chr1.4:11222989-11223008 | None:intergenic | 45.0% | |
| ATCCTGCCAAGAGATATGCT+GGG | + | chr1.4:11224512-11224531 | MS.gene021474:CDS | 45.0% | |
| ATGAAGACGAAGACGATCGT+AGG | - | chr1.4:11221836-11221855 | None:intergenic | 45.0% | |
| ATGAGTCAGATATTCCGGGA+CGG | - | chr1.4:11223967-11223986 | None:intergenic | 45.0% | |
| ATGTAATCCACCAGTTGCAC+GGG | - | chr1.4:11224581-11224600 | None:intergenic | 45.0% | |
| ATTCTCAAGCATGCCTAGCA+TGG | + | chr1.4:11222951-11222970 | MS.gene021474:intron | 45.0% | |
| CAACCACCGACAAACAAACT+CGG | - | chr1.4:11222070-11222089 | None:intergenic | 45.0% | |
| CATCATGGGAAGGAAAAAGG+AGG | - | chr1.4:11223006-11223025 | None:intergenic | 45.0% | |
| CATGGCCACCAACACAATTA+AGG | + | chr1.4:11223074-11223093 | MS.gene021474:intron | 45.0% | |
| CATTAGGGAATGGCTTCCTA+GGG | - | chr1.4:11226446-11226465 | None:intergenic | 45.0% | |
| CCTTTCCATCCATTAGGGAA+TGG | - | chr1.4:11226456-11226475 | None:intergenic | 45.0% | |
| CTAAGGAAGATGGATACCCT+AGG | + | chr1.4:11226427-11226446 | MS.gene021474:CDS | 45.0% | |
| CTTGGCAATACAGAACGGTT+CGG | + | chr1.4:11224626-11224645 | MS.gene021474:CDS | 45.0% | |
| GAGGTTAAAACGGTACAGAG+TGG | + | chr1.4:11225623-11225642 | MS.gene021474:CDS | 45.0% | |
| GATGTAATCCACCAGTTGCA+CGG | - | chr1.4:11224582-11224601 | None:intergenic | 45.0% | |
| GCCCTTGCCAAGATTAAAAG+AGG | + | chr1.4:11224722-11224741 | MS.gene021474:CDS | 45.0% | |
| GCTGAGTTTGATGCTACACT+TGG | + | chr1.4:11222003-11222022 | MS.gene021474:CDS | 45.0% | |
| GGATAGGCTCATAGGAAGAT+AGG | - | chr1.4:11226312-11226331 | None:intergenic | 45.0% | |
| GGTCAATTAAATTGGGACGG+AGG | + | chr1.4:11224282-11224301 | MS.gene021474:intron | 45.0% | |
| GTAACCAGTTGCCAATACGA+TGG | - | chr1.4:11225682-11225701 | None:intergenic | 45.0% | |
| GTCATCTTCTATCCCATGCT+AGG | - | chr1.4:11222967-11222986 | None:intergenic | 45.0% | |
| GTGGTTGGATGTGGAAATTC+AGG | + | chr1.4:11222219-11222238 | MS.gene021474:CDS | 45.0% | |
| TCATGGGAAGGAAAAAGGAG+GGG | - | chr1.4:11223004-11223023 | None:intergenic | 45.0% | |
| TGATGCTGCTCCTTCTATTG+TGG | + | chr1.4:11222272-11222291 | MS.gene021474:CDS | 45.0% | |
| TGTCCATGTGGTTGCTAAAG+TGG | + | chr1.4:11224552-11224571 | MS.gene021474:CDS | 45.0% | |
| TTCTCAAGCATGCCTAGCAT+GGG | + | chr1.4:11222952-11222971 | MS.gene021474:intron | 45.0% | |
| ! | AACAGTGGTGCTAACAACGT+AGG | + | chr1.4:11223642-11223661 | MS.gene021474:intron | 45.0% |
| ! | ACGGAGGGAGTATATAGTAG+AGG | - | chr1.4:11223948-11223967 | None:intergenic | 45.0% |
| ! | CCATTCCCTAATGGATGGAA+AGG | + | chr1.4:11226453-11226472 | MS.gene021474:CDS | 45.0% |
| ! | GAAAATGGCCTCTTTGCTGT+TGG | + | chr1.4:11226477-11226496 | MS.gene021474:CDS | 45.0% |
| ! | GAGGGAGTATATAGTAGAGG+AGG | - | chr1.4:11223945-11223964 | None:intergenic | 45.0% |
| ! | GATCGGTTCCATTTCCGAAA+CGG | - | chr1.4:11222370-11222389 | None:intergenic | 45.0% |
| ! | GCATATGGTTTGGCTAAAGG+TGG | + | chr1.4:11223550-11223569 | MS.gene021474:intron | 45.0% |
| ! | TGAACGGTGTTGGAAAGTTG+AGG | + | chr1.4:11226560-11226579 | MS.gene021474:CDS | 45.0% |
| ! | TTACCGAGTTTGTTTGTCGG+TGG | + | chr1.4:11222064-11222083 | MS.gene021474:CDS | 45.0% |
| ! | TTGGGTCAGATATTCTGGGA+CGG | + | chr1.4:11224391-11224410 | MS.gene021474:intron | 45.0% |
| !! | ATGGGTTAGTTATTCCGGGA+CGG | - | chr1.4:11224087-11224106 | None:intergenic | 45.0% |
| !! | CAATACAGAACGGTTCGGTT+TGG | + | chr1.4:11224631-11224650 | MS.gene021474:CDS | 45.0% |
| !! | CGTTTTAACCTCTTGATGCC+TGG | - | chr1.4:11225615-11225634 | None:intergenic | 45.0% |
| !! | GAAGGAGTTGATGAGTTTGG+TGG | + | chr1.4:11222135-11222154 | MS.gene021474:CDS | 45.0% |
| !! | GCTGTTGGTTTCACTAAACG+TGG | + | chr1.4:11226492-11226511 | MS.gene021474:CDS | 45.0% |
| !! | GGGAAGAAAGTTTTGGTGGT+TGG | + | chr1.4:11222204-11222223 | MS.gene021474:CDS | 45.0% |
| !!! | CAACTTTTGGGTTGTCCATG+TGG | + | chr1.4:11224540-11224559 | MS.gene021474:CDS | 45.0% |
| AAAGACACCGGTCCTAGATG+TGG | + | chr1.4:11224697-11224716 | MS.gene021474:CDS | 50.0% | |
| AAAGTGGTTACCCGTGCAAC+TGG | + | chr1.4:11224568-11224587 | MS.gene021474:CDS | 50.0% | |
| AAGACACCGGTCCTAGATGT+GGG | + | chr1.4:11224698-11224717 | MS.gene021474:CDS | 50.0% | |
| ACTATATACTCCCTCCGTCC+CGG | + | chr1.4:11223950-11223969 | MS.gene021474:intron | 50.0% | |
| ATAGTAGGAGCAGGACCTTC+AGG | + | chr1.4:11221718-11221737 | MS.gene021474:CDS | 50.0% | |
| CATCCTGCCAAGAGATATGC+TGG | + | chr1.4:11224511-11224530 | MS.gene021474:CDS | 50.0% | |
| CCATTAGGGAATGGCTTCCT+AGG | - | chr1.4:11226447-11226466 | None:intergenic | 50.0% | |
| CCTAGGAAGCCATTCCCTAA+TGG | + | chr1.4:11226444-11226463 | MS.gene021474:CDS | 50.0% | |
| CGCATCATGATCGTCGTTGT+TGG | + | chr1.4:11223334-11223353 | MS.gene021474:intron | 50.0% | |
| GCAACTGCTGCATTGTGGAT+CGG | - | chr1.4:11222387-11222406 | None:intergenic | 50.0% | |
| GCTCCTACTATCAATGGACC+TGG | - | chr1.4:11221709-11221728 | None:intergenic | 50.0% | |
| GGAAGCCATTCCCTAATGGA+TGG | + | chr1.4:11226448-11226467 | MS.gene021474:CDS | 50.0% | |
| GGCCGTAACAATGAGGACAT+AGG | + | chr1.4:11225254-11225273 | MS.gene021474:intron | 50.0% | |
| GGTCCTGCTCCTACTATCAA+TGG | - | chr1.4:11221715-11221734 | None:intergenic | 50.0% | |
| GTTAGTTATTCCGGGACGGA+GGG | - | chr1.4:11224083-11224102 | None:intergenic | 50.0% | |
| TTCCCAGCATATCTCTTGGC+AGG | - | chr1.4:11224517-11224536 | None:intergenic | 50.0% | |
| TTCTCGCAACTGCTGCATTG+TGG | - | chr1.4:11222392-11222411 | None:intergenic | 50.0% | |
| ! | AGTGGTGCTAACAACGTAGG+TGG | + | chr1.4:11223645-11223664 | MS.gene021474:intron | 50.0% |
| ! | GAGCTTATGTGGGAGGCTTT+TGG | - | chr1.4:11223111-11223130 | None:intergenic | 50.0% |
| ! | GGTCCATTGATAGTAGGAGC+AGG | + | chr1.4:11221709-11221728 | MS.gene021474:CDS | 50.0% |
| ! | GTGGTGCTAACAACGTAGGT+GGG | + | chr1.4:11223646-11223665 | MS.gene021474:intron | 50.0% |
| ! | TGGTGCTAACAACGTAGGTG+GGG | + | chr1.4:11223647-11223666 | MS.gene021474:intron | 50.0% |
| !! | CACTTGGTTTTTGGAGGGTG+AGG | + | chr1.4:11222019-11222038 | MS.gene021474:CDS | 50.0% |
| !! | CAGAACGGTTCGGTTTGGTT+CGG | + | chr1.4:11224636-11224655 | MS.gene021474:CDS | 50.0% |
| !! | CGGTGGTTGATAGTTGCAAC+CGG | + | chr1.4:11222081-11222100 | MS.gene021474:CDS | 50.0% |
| !! | GTCAGATATTCTGGGACGGA+GGG | + | chr1.4:11224395-11224414 | MS.gene021474:intron | 50.0% |
| !! | TGGACTACTTGGTGCATCCA+TGG | + | chr1.4:11226512-11226531 | MS.gene021474:CDS | 50.0% |
| !! | TTTTGGAGGGTGAGGAGTGA+GGG | + | chr1.4:11222027-11222046 | MS.gene021474:CDS | 50.0% |
| !! | TTTTTGGAGGGTGAGGAGTG+AGG | + | chr1.4:11222026-11222045 | MS.gene021474:CDS | 50.0% |
| AACCGCCTCAGCATTCTCTC+CGG | - | chr1.4:11222103-11222122 | None:intergenic | 55.0% | |
| AACCGGAGAGAATGCTGAGG+CGG | + | chr1.4:11222098-11222117 | MS.gene021474:CDS | 55.0% | |
| AGGTACGTCCAGGCATCAAG+AGG | + | chr1.4:11225604-11225623 | MS.gene021474:intron | 55.0% | |
| AGTCAGATATTCCGGGACGG+AGG | - | chr1.4:11223964-11223983 | None:intergenic | 55.0% | |
| GAATGCTGAGGCGGTTGTAC+CGG | + | chr1.4:11222107-11222126 | MS.gene021474:CDS | 55.0% | |
| GCGGTTGTACCGGAGATTGA+AGG | + | chr1.4:11222117-11222136 | MS.gene021474:CDS | 55.0% | |
| GCTGCTACTGCTAGTCCTGA+AGG | - | chr1.4:11221736-11221755 | None:intergenic | 55.0% | |
| GGTGCTAACAACGTAGGTGG+GGG | + | chr1.4:11223648-11223667 | MS.gene021474:intron | 55.0% | |
| GTACCTGAACGAGGGAGCTA+TGG | - | chr1.4:11225590-11225609 | None:intergenic | 55.0% | |
| GTCAGATATTCCGGGACGGA+GGG | - | chr1.4:11223963-11223982 | None:intergenic | 55.0% | |
| TCTCCATAGCTCCCTCGTTC+AGG | + | chr1.4:11225584-11225603 | MS.gene021474:intron | 55.0% | |
| TGCAACCGGAGAGAATGCTG+AGG | + | chr1.4:11222095-11222114 | MS.gene021474:CDS | 55.0% | |
| TTTGGAGGGTGAGGAGTGAG+GGG | + | chr1.4:11222028-11222047 | MS.gene021474:CDS | 55.0% | |
| ! | GACGCCATCGTATTGGCAAC+TGG | + | chr1.4:11225675-11225694 | MS.gene021474:CDS | 55.0% |
| ! | GGAGGCTTTTGGCCCTTGAT+AGG | - | chr1.4:11223100-11223119 | None:intergenic | 55.0% |
| ! | GGTTAGTTATTCCGGGACGG+AGG | - | chr1.4:11224084-11224103 | None:intergenic | 55.0% |
| !! | AGTTCTAGAGGACCCAACCG+AGG | - | chr1.4:11224662-11224681 | None:intergenic | 55.0% |
| !! | GGTCAGATATTCTGGGACGG+AGG | + | chr1.4:11224394-11224413 | MS.gene021474:intron | 55.0% |
| GCCTGGACGTACCTGAACGA+GGG | - | chr1.4:11225598-11225617 | None:intergenic | 60.0% | |
| GTGGTTACCCGTGCAACTGG+TGG | + | chr1.4:11224571-11224590 | MS.gene021474:CDS | 60.0% | |
| TCCCTCGTTCAGGTACGTCC+AGG | + | chr1.4:11225594-11225613 | MS.gene021474:intron | 60.0% | |
| TGCCTGGACGTACCTGAACG+AGG | - | chr1.4:11225599-11225618 | None:intergenic | 60.0% | |
| ! | AGGGCACCCACATCTAGGAC+CGG | - | chr1.4:11224707-11224726 | None:intergenic | 60.0% |
| ! | CGTTTTCCGCAGCTGCTGCA+GGG | + | chr1.4:11222455-11222474 | MS.gene021474:intron | 60.0% |
| ! | TCGTTTTCCGCAGCTGCTGC+AGG | + | chr1.4:11222454-11222473 | MS.gene021474:intron | 60.0% |
| !! | GGTTCGGTTTGGTTCGGCCT+CGG | + | chr1.4:11224642-11224661 | MS.gene021474:CDS | 60.0% |
| !! | GGTTTGGTTCGGCCTCGGTT+GGG | + | chr1.4:11224647-11224666 | MS.gene021474:CDS | 60.0% |
| !! | TGGCAAGGGCACCCACATCT+AGG | - | chr1.4:11224712-11224731 | None:intergenic | 60.0% |
| CTACAGCCCTGCAGCAGCTG+CGG | - | chr1.4:11222464-11222483 | None:intergenic | 65.0% | |
| GAGGGTGAGGAGTGAGGGGA+AGG | + | chr1.4:11222032-11222051 | MS.gene021474:CDS | 65.0% | |
| GAGTGAGGGGAAGGCGGGAA+TGG | + | chr1.4:11222041-11222060 | MS.gene021474:CDS | 65.0% | |
| GGTGAGGAGTGAGGGGAAGG+CGG | + | chr1.4:11222035-11222054 | MS.gene021474:CDS | 65.0% | |
| GTGAGGAGTGAGGGGAAGGC+GGG | + | chr1.4:11222036-11222055 | MS.gene021474:CDS | 65.0% | |
| !! | CGGTTTGGTTCGGCCTCGGT+TGG | + | chr1.4:11224646-11224665 | MS.gene021474:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 11221649 | 11226614 | 11221649 | ID=MS.gene021474 |
| chr1.4 | mRNA | 11221649 | 11226614 | 11221649 | ID=MS.gene021474.t1;Parent=MS.gene021474 |
| chr1.4 | exon | 11221649 | 11222305 | 11221649 | ID=MS.gene021474.t1.exon1;Parent=MS.gene021474.t1 |
| chr1.4 | CDS | 11221649 | 11222305 | 11221649 | ID=cds.MS.gene021474.t1;Parent=MS.gene021474.t1 |
| chr1.4 | exon | 11224506 | 11224754 | 11224506 | ID=MS.gene021474.t1.exon2;Parent=MS.gene021474.t1 |
| chr1.4 | CDS | 11224506 | 11224754 | 11224506 | ID=cds.MS.gene021474.t1;Parent=MS.gene021474.t1 |
| chr1.4 | exon | 11225606 | 11225728 | 11225606 | ID=MS.gene021474.t1.exon3;Parent=MS.gene021474.t1 |
| chr1.4 | CDS | 11225606 | 11225728 | 11225606 | ID=cds.MS.gene021474.t1;Parent=MS.gene021474.t1 |
| chr1.4 | exon | 11226411 | 11226614 | 11226411 | ID=MS.gene021474.t1.exon4;Parent=MS.gene021474.t1 |
| chr1.4 | CDS | 11226411 | 11226614 | 11226411 | ID=cds.MS.gene021474.t1;Parent=MS.gene021474.t1 |
| Gene Sequence |
| Protein sequence |
