AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene53594

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53594.t1 MTR_1g046230 98.109 423 8 0 1 423 1 423 0.0 861
MS.gene53594.t1 MTR_7g099330 71.934 424 110 2 1 423 1 416 0.0 632
MS.gene53594.t1 MTR_1g069275 71.635 416 113 2 9 423 10 421 0.0 616
MS.gene53594.t1 MTR_1g008380 59.796 393 154 2 16 407 34 423 2.38e-176 499
MS.gene53594.t1 MTR_6g086870 58.701 385 157 2 20 402 16 400 4.06e-174 493
MS.gene53594.t1 MTR_1g011630 57.732 388 158 1 15 402 7 388 9.36e-174 492
MS.gene53594.t1 MTR_3g109520 59.383 389 155 2 19 406 34 420 1.69e-171 487
MS.gene53594.t1 MTR_7g099160 71.171 333 87 2 92 423 213 537 3.39e-170 488
MS.gene53594.t1 MTR_7g107710 47.074 376 190 5 25 398 7 375 1.13e-117 348
MS.gene53594.t1 MTR_7g107690 44.000 375 201 4 25 397 9 376 3.72e-114 339
MS.gene53594.t1 MTR_5g033260 44.531 384 202 6 25 405 7 382 4.24e-114 339
MS.gene53594.t1 MTR_8g432640 44.709 378 200 5 25 400 7 377 6.13e-113 336
MS.gene53594.t1 MTR_3g088945 42.328 378 205 5 25 398 8 376 2.71e-108 325
MS.gene53594.t1 MTR_3g088925 42.063 378 206 5 25 398 8 376 5.51e-108 324
MS.gene53594.t1 MTR_3g088955 42.063 378 206 5 25 398 8 376 1.01e-106 321
MS.gene53594.t1 MTR_4g051642 42.593 378 203 6 25 398 8 375 6.48e-106 319
MS.gene53594.t1 MTR_3g096030 38.764 178 83 3 25 202 7 158 1.13e-34 126
MS.gene53594.t1 MTR_2g450310 26.772 381 204 19 26 342 7 376 3.58e-15 77.8
MS.gene53594.t1 MTR_2g450510 25.397 378 215 16 25 342 6 376 1.34e-12 69.7
MS.gene53594.t1 MTR_2g044140 25.916 382 219 15 16 339 6 381 4.82e-12 68.2
MS.gene53594.t1 MTR_2g020630 26.984 252 143 11 16 230 6 253 2.43e-11 65.9
MS.gene53594.t1 MTR_3g437580 22.917 240 142 6 26 232 15 244 3.32e-11 64.7
MS.gene53594.t1 MTR_3g437580 22.917 240 142 6 26 232 15 244 6.08e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53594.t1 AT1G04610 75.887 423 99 2 4 423 15 437 0.0 676
MS.gene53594.t1 AT2G33230 73.872 421 108 2 4 423 12 431 0.0 633
MS.gene53594.t1 AT4G28720 68.765 413 128 1 11 422 12 424 0.0 602
MS.gene53594.t1 AT5G43890 70.098 408 120 2 15 421 16 422 0.0 599
MS.gene53594.t1 AT1G04180 68.873 408 122 3 15 421 16 419 0.0 584
MS.gene53594.t1 AT5G25620 58.942 397 156 3 16 409 24 416 1.67e-172 489
MS.gene53594.t1 AT5G25620 57.805 410 165 4 16 422 24 428 1.42e-171 488
MS.gene53594.t1 AT5G11320 59.173 387 150 2 19 405 12 390 6.07e-169 480
MS.gene53594.t1 AT4G13260 55.419 406 171 3 15 419 19 415 5.10e-168 478
MS.gene53594.t1 AT4G32540 51.889 397 183 2 19 414 16 405 9.96e-161 459
MS.gene53594.t1 AT4G32540 51.629 399 183 3 19 414 16 407 3.91e-159 455
MS.gene53594.t1 AT5G11320 58.485 330 129 2 19 348 12 333 5.21e-137 397
MS.gene53594.t1 AT4G13260 57.823 294 122 1 15 308 19 310 1.13e-128 374
MS.gene53594.t1 AT1G21430 46.011 376 191 6 25 397 10 376 5.29e-116 344
MS.gene53594.t1 AT4G13260 52.454 326 137 4 95 419 4 312 3.46e-114 337
MS.gene53594.t1 AT1G48910 44.000 375 201 5 25 397 6 373 1.99e-113 338
MS.gene53594.t1 AT1G19250 25.134 374 214 15 25 339 14 380 2.77e-16 81.3
MS.gene53594.t1 AT5G45180 26.074 349 202 13 25 339 14 340 4.94e-16 80.1
MS.gene53594.t1 AT1G62620 23.673 245 145 7 26 237 15 250 2.80e-11 65.5
MS.gene53594.t1 AT1G62560 23.721 215 131 6 26 211 15 225 5.98e-11 64.3
MS.gene53594.t1 AT1G62620 23.673 245 145 7 26 237 15 250 6.75e-11 64.3
MS.gene53594.t1 AT1G62560 23.504 234 138 7 26 230 15 236 6.99e-11 64.3

Find 91 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTCTGACTCGTGTGATTT+TGG 0.152127 1.2:+29180978 MS.gene53594:CDS
GTTGTTGGCTGTGGAAATTC+TGG 0.197319 1.2:+29180669 MS.gene53594:CDS
TTCGAAGGTTTGGCTGATTT+TGG 0.199341 1.2:+29180582 MS.gene53594:CDS
CCATTGATGGATTTGCATTA+TGG 0.206435 1.2:-29180719 None:intergenic
CCATTTGGAAATGGATCTTT+TGG 0.223238 1.2:-29181457 None:intergenic
AGCACTGTTTCATTGAAATT+TGG 0.226962 1.2:-29180417 None:intergenic
TGATGAAAAGGTTACCAATT+TGG 0.239035 1.2:+29180935 MS.gene53594:CDS
TTTACAAGGAGAGGACTTTC+TGG 0.246725 1.2:+29181514 MS.gene53594:CDS
GTGTTACCAAGGGAAATATT+TGG 0.264585 1.2:+29180883 MS.gene53594:CDS
GTGATCAGGGAAAGGAAAAT+TGG 0.273886 1.2:-29180322 None:intergenic
TCGAAAAGTATGGTCTTAAA+AGG 0.282601 1.2:+29181007 MS.gene53594:CDS
AGGACTTTCTGGTGCTTCAT+TGG 0.323002 1.2:+29181525 MS.gene53594:CDS
CCTTTCCATCCATTTGGAAA+TGG 0.337340 1.2:-29181466 None:intergenic
GGTAGTTGACACAATTGTTT+AGG 0.340912 1.2:-29180300 None:intergenic
TTAGAGCTTAAGAACACTTC+AGG 0.349301 1.2:+29181045 MS.gene53594:CDS
GCATTTCCTTTCCATCCATT+TGG 0.357379 1.2:-29181472 None:intergenic
ATCTTATCGACCATCCAAAT+TGG 0.360444 1.2:-29180949 None:intergenic
CTCAAGACATTGCTAAAAGT+TGG 0.362798 1.2:+29181563 MS.gene53594:CDS
GGTCAAATTAAAGTTGTTCC+TGG 0.365895 1.2:+29181114 MS.gene53594:CDS
GAGCTTCTAACAACCATTGA+TGG 0.371002 1.2:-29180732 None:intergenic
ATGATGAAACCTTTGGTCTA+TGG 0.372822 1.2:+29180451 MS.gene53594:CDS
CAATGTACCATCTTGGCTTA+AGG 0.373912 1.2:+29181227 MS.gene53594:CDS
AGCAGTTGCAGCTTGTCTTA+AGG 0.375176 1.2:+29180185 MS.gene53594:CDS
TTGGGGAATGTCGAAAAGTA+TGG 0.384596 1.2:+29180997 MS.gene53594:CDS
GATTCTGTTGTTCTTGCTAC+TGG 0.387617 1.2:+29181195 MS.gene53594:CDS
TGAGCCGGAGTTCGAAGGTT+TGG 0.396120 1.2:+29180572 MS.gene53594:CDS
GGACGACGAAAGGAACATTT+TGG 0.398512 1.2:-29180209 None:intergenic
GGGAAAGTTGAACTTGTTGA+TGG 0.399526 1.2:+29181156 MS.gene53594:CDS
ATAGTTGGAGCTGGTCCATC+AGG 0.401112 1.2:+29180159 MS.gene53594:CDS
GGTTGCTACCGGTGAAAATT+CGG 0.407888 1.2:+29180542 MS.gene53594:CDS
TGGTCTTAAAAGGCCATGTA+TGG 0.410967 1.2:+29181017 MS.gene53594:CDS
GGGTATTCAGGGAAGTGATC+AGG 0.411727 1.2:-29180336 None:intergenic
AGTGCTCCAATATCTAAAAC+TGG 0.412699 1.2:-29181075 None:intergenic
TATGGAGGATTAAGAGCAAT+AGG 0.415166 1.2:+29180469 MS.gene53594:CDS
GGACCAGCTCCAACTATAAC+AGG 0.417852 1.2:-29180153 None:intergenic
TTGAAGTTGAGTATATTTGT+AGG 0.421139 1.2:+29180511 MS.gene53594:CDS
CATGCTTGTGACTATAAATC+TGG 0.421528 1.2:+29180618 MS.gene53594:CDS
AAACAGTGGCTGCACGTCAT+AGG 0.425092 1.2:+29181611 MS.gene53594:CDS
GCTAAGTATGATGAAACCTT+TGG 0.428804 1.2:+29180444 MS.gene53594:CDS
TAGCTGTTATGTTGATGAAA+AGG 0.431581 1.2:+29180923 MS.gene53594:CDS
GTGAATGGACCTGTTATAGT+TGG 0.443384 1.2:+29180144 MS.gene53594:CDS
ATTTGGAAAATCTACTTATG+AGG 0.443961 1.2:+29180900 MS.gene53594:CDS
AATGTTCTTGTTGTTGGCTG+TGG 0.445856 1.2:+29180660 MS.gene53594:CDS
TGATCAGGGAAAGGAAAATT+GGG 0.452224 1.2:-29180321 None:intergenic
CAATGCAGTTAGCTCTTTCG+AGG 0.466628 1.2:-29180230 None:intergenic
CTAACTGCATTGCTTCCCTT+TGG 0.470550 1.2:+29180241 MS.gene53594:CDS
TGAGAAAATTTCTTTATCCC+AGG 0.478858 1.2:-29181132 None:intergenic
GAAGTGTTCTTAAGCTCTAA+AGG 0.482235 1.2:-29181042 None:intergenic
CCAAAAGATCCATTTCCAAA+TGG 0.490262 1.2:+29181457 MS.gene53594:CDS
TAGAGCTTAAGAACACTTCA+GGG 0.496144 1.2:+29181046 MS.gene53594:CDS
CCATAATGCAAATCCATCAA+TGG 0.497074 1.2:+29180719 MS.gene53594:CDS
AACCGTTGCATATTAGTGAA+TGG 0.502495 1.2:+29180129 MS.gene53594:CDS
GTCAAATTAAAGTTGTTCCT+GGG 0.509533 1.2:+29181115 MS.gene53594:CDS
GGGTCGAATGTTTGAGACAT+TGG 0.515170 1.2:-29180090 None:intergenic
AAGATCCATTTCCAAATGGA+TGG 0.517361 1.2:+29181461 MS.gene53594:CDS
AGGTGGCTTGTGGTTGCTAC+CGG 0.524010 1.2:+29180531 MS.gene53594:CDS
CCATTTCCAAATGGATGGAA+AGG 0.525251 1.2:+29181466 MS.gene53594:CDS
ATCAATGGTTGTTAGAAGCT+CGG 0.527251 1.2:+29180734 MS.gene53594:CDS
AAATCTGGTGTGAATCATAG+TGG 0.531964 1.2:+29180633 MS.gene53594:CDS
GCACTTGAGAAAGTTAGATC+TGG 0.536687 1.2:+29181093 MS.gene53594:CDS
ATAGAAGCAATGTACCATCT+TGG 0.538116 1.2:+29181220 MS.gene53594:CDS
AGCTCTAAAGGTCCCATACA+TGG 0.538443 1.2:-29181030 None:intergenic
GAAAAGGTTACCAATTTGGA+TGG 0.539517 1.2:+29180939 MS.gene53594:CDS
ATGGTCGATAAGATATTGCT+TGG 0.541229 1.2:+29180958 MS.gene53594:CDS
AATGCTGGTCTATATGCTGT+TGG 0.542155 1.2:+29181490 MS.gene53594:CDS
CGTAGGTTCGATTCTGCCAA+AGG 0.545565 1.2:-29180257 None:intergenic
TCAGCCAAACCTTCGAACTC+CGG 0.546694 1.2:-29180576 None:intergenic
AATGGATGGAAAGGAAATGC+TGG 0.546827 1.2:+29181475 MS.gene53594:CDS
AAACTAACCTTAAGCCAAGA+TGG 0.557267 1.2:-29181234 None:intergenic
GGACCTGTTATAGTTGGAGC+TGG 0.559689 1.2:+29180150 MS.gene53594:CDS
TATATGCTGTTGGATTTACA+AGG 0.562777 1.2:+29181500 MS.gene53594:CDS
GGTATTCAGGGAAGTGATCA+GGG 0.569347 1.2:-29180335 None:intergenic
GCTCTTTCGAGGACGACGAA+AGG 0.572773 1.2:-29180219 None:intergenic
AAAGTTGAGCCGGAGTTCGA+AGG 0.573012 1.2:+29180567 MS.gene53594:CDS
ATGAAACCTTTGGTCTATGG+AGG 0.575369 1.2:+29180454 MS.gene53594:CDS
ATGAAGTTTAAGACGATCGT+AGG 0.577864 1.2:-29180274 None:intergenic
CTTAATCCTCCATAGACCAA+AGG 0.582115 1.2:-29180460 None:intergenic
GCTGTTGGATTTACAAGGAG+AGG 0.586680 1.2:+29181505 MS.gene53594:CDS
GTATATTTGTAGGTGGCTTG+TGG 0.588469 1.2:+29180521 MS.gene53594:CDS
TCGAATGTTTGAGACATTGG+TGG 0.588628 1.2:-29180087 None:intergenic
GCTGCAACTGCTAAGCCTGA+TGG 0.591010 1.2:-29180174 None:intergenic
GGTCTTAAAAGGCCATGTAT+GGG 0.595116 1.2:+29181018 MS.gene53594:CDS
AATAGGTTCATGTGTTACCA+AGG 0.598175 1.2:+29180872 MS.gene53594:intron
GTAGGTTCGATTCTGCCAAA+GGG 0.600880 1.2:-29180256 None:intergenic
ATAGGTTCATGTGTTACCAA+GGG 0.601879 1.2:+29180873 MS.gene53594:intron
AAGTTGAGTATATTTGTAGG+TGG 0.602864 1.2:+29180514 MS.gene53594:CDS
AAATTCGGAGAAAGTTGAGC+CGG 0.610705 1.2:+29180557 MS.gene53594:CDS
GTCCATTCACTAATATGCAA+CGG 0.611348 1.2:-29180131 None:intergenic
TCAGGGAAGTGATCAGGGAA+AGG 0.611951 1.2:-29180330 None:intergenic
TGGCTGTGGAAATTCTGGCA+TGG 0.638016 1.2:+29180674 MS.gene53594:CDS
TAAACAAAGAAAGAAAACAG+TGG 0.722515 1.2:+29181597 MS.gene53594:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCACAAAAAAAATAAAGA+TGG - chr1.2:29180845-29180864 None:intergenic 15.0%
!!! TTTTGTGATTTTTGATTAAT+AGG + chr1.2:29180855-29180874 MS.gene53594:intron 15.0%
!!! AATGAATTTTTTTCCAAAGA+TGG + chr1.2:29181430-29181449 MS.gene53594:CDS 20.0%
!!! TTATGAACTGAAATTTTGTA+GGG - chr1.2:29180359-29180378 None:intergenic 20.0%
! ATTTGGAAAATCTACTTATG+AGG + chr1.2:29180900-29180919 MS.gene53594:CDS 25.0%
! TAAACAAAGAAAGAAAACAG+TGG + chr1.2:29181597-29181616 MS.gene53594:CDS 25.0%
! TTCTATGTTATGTATTGTTC+AGG + chr1.2:29181405-29181424 MS.gene53594:intron 25.0%
! TTGAAGTTGAGTATATTTGT+AGG + chr1.2:29180511-29180530 MS.gene53594:CDS 25.0%
!! CTTATGAACTGAAATTTTGT+AGG - chr1.2:29180360-29180379 None:intergenic 25.0%
!! GGATAAAGAAATTTTCTCAA+GGG + chr1.2:29181136-29181155 MS.gene53594:CDS 25.0%
AAGTTGAGTATATTTGTAGG+TGG + chr1.2:29180514-29180533 MS.gene53594:CDS 30.0%
AGCACTGTTTCATTGAAATT+TGG - chr1.2:29180420-29180439 None:intergenic 30.0%
GTCAAATTAAAGTTGTTCCT+GGG + chr1.2:29181115-29181134 MS.gene53594:CDS 30.0%
TATATGCTGTTGGATTTACA+AGG + chr1.2:29181500-29181519 MS.gene53594:CDS 30.0%
TGAGAAAATTTCTTTATCCC+AGG - chr1.2:29181135-29181154 None:intergenic 30.0%
TGATGAAAAGGTTACCAATT+TGG + chr1.2:29180935-29180954 MS.gene53594:CDS 30.0%
! GATTTTCCAAATATTTCCCT+TGG - chr1.2:29180892-29180911 None:intergenic 30.0%
! GGAAAAAATGTTCTTGTTGT+TGG + chr1.2:29180654-29180673 MS.gene53594:CDS 30.0%
! GGGATAAAGAAATTTTCTCA+AGG + chr1.2:29181135-29181154 MS.gene53594:CDS 30.0%
! TAGCTGTTATGTTGATGAAA+AGG + chr1.2:29180923-29180942 MS.gene53594:CDS 30.0%
! TCGAAAAGTATGGTCTTAAA+AGG + chr1.2:29181007-29181026 MS.gene53594:CDS 30.0%
!! GAAATTTTGTAGGGTATTCA+GGG - chr1.2:29180350-29180369 None:intergenic 30.0%
!! TGAAATTTTGTAGGGTATTC+AGG - chr1.2:29180351-29180370 None:intergenic 30.0%
!!! AAGACACCAGTTTTAGATAT+TGG + chr1.2:29181069-29181088 MS.gene53594:CDS 30.0%
!!! AGTTTTTAGCATATGATTCG+AGG - chr1.2:29180386-29180405 None:intergenic 30.0%
AAACTAACCTTAAGCCAAGA+TGG - chr1.2:29181237-29181256 None:intergenic 35.0%
AAATCTGGTGTGAATCATAG+TGG + chr1.2:29180633-29180652 MS.gene53594:CDS 35.0%
AACCGTTGCATATTAGTGAA+TGG + chr1.2:29180129-29180148 MS.gene53594:CDS 35.0%
AAGATCCATTTCCAAATGGA+TGG + chr1.2:29181461-29181480 MS.gene53594:CDS 35.0%
AATAGGTTCATGTGTTACCA+AGG + chr1.2:29180872-29180891 MS.gene53594:intron 35.0%
ATAGAAGCAATGTACCATCT+TGG + chr1.2:29181220-29181239 MS.gene53594:CDS 35.0%
ATAGGTTCATGTGTTACCAA+GGG + chr1.2:29180873-29180892 MS.gene53594:intron 35.0%
ATCAATGGTTGTTAGAAGCT+CGG + chr1.2:29180734-29180753 MS.gene53594:CDS 35.0%
ATCTTATCGACCATCCAAAT+TGG - chr1.2:29180952-29180971 None:intergenic 35.0%
ATGATGAAACCTTTGGTCTA+TGG + chr1.2:29180451-29180470 MS.gene53594:CDS 35.0%
ATGGTCGATAAGATATTGCT+TGG + chr1.2:29180958-29180977 MS.gene53594:CDS 35.0%
CATGCTTGTGACTATAAATC+TGG + chr1.2:29180618-29180637 MS.gene53594:CDS 35.0%
CCAAAAGATCCATTTCCAAA+TGG + chr1.2:29181457-29181476 MS.gene53594:CDS 35.0%
CCATAATGCAAATCCATCAA+TGG + chr1.2:29180719-29180738 MS.gene53594:CDS 35.0%
CTCAAGACATTGCTAAAAGT+TGG + chr1.2:29181563-29181582 MS.gene53594:CDS 35.0%
GAAAAGGTTACCAATTTGGA+TGG + chr1.2:29180939-29180958 MS.gene53594:CDS 35.0%
GCTAAGTATGATGAAACCTT+TGG + chr1.2:29180444-29180463 MS.gene53594:CDS 35.0%
GGCACGTATAATTACAAAGA+AGG - chr1.2:29181267-29181286 None:intergenic 35.0%
GGTAGTTGACACAATTGTTT+AGG - chr1.2:29180303-29180322 None:intergenic 35.0%
GGTCAAATTAAAGTTGTTCC+TGG + chr1.2:29181114-29181133 MS.gene53594:CDS 35.0%
GTCCATTCACTAATATGCAA+CGG - chr1.2:29180134-29180153 None:intergenic 35.0%
GTGTTACCAAGGGAAATATT+TGG + chr1.2:29180883-29180902 MS.gene53594:CDS 35.0%
TAGAGCTTAAGAACACTTCA+GGG + chr1.2:29181046-29181065 MS.gene53594:CDS 35.0%
TATGGAGGATTAAGAGCAAT+AGG + chr1.2:29180469-29180488 MS.gene53594:CDS 35.0%
TGATCAGGGAAAGGAAAATT+GGG - chr1.2:29180324-29180343 None:intergenic 35.0%
TTAGAGCTTAAGAACACTTC+AGG + chr1.2:29181045-29181064 MS.gene53594:CDS 35.0%
! AACTTTCTCCGAATTTTCAC+CGG - chr1.2:29180553-29180572 None:intergenic 35.0%
! AGTGCTCCAATATCTAAAAC+TGG - chr1.2:29181078-29181097 None:intergenic 35.0%
! ATCTTTTGGCATTCCATCTT+TGG - chr1.2:29181446-29181465 None:intergenic 35.0%
! ATGAAGTTTAAGACGATCGT+AGG - chr1.2:29180277-29180296 None:intergenic 35.0%
! CCATTTGGAAATGGATCTTT+TGG - chr1.2:29181460-29181479 None:intergenic 35.0%
! GAAGTGTTCTTAAGCTCTAA+AGG - chr1.2:29181045-29181064 None:intergenic 35.0%
!! ACGGTTTTTGAGAATGTCTT+CGG - chr1.2:29180115-29180134 None:intergenic 35.0%
!! CCATTGATGGATTTGCATTA+TGG - chr1.2:29180722-29180741 None:intergenic 35.0%
AAATTCGGAGAAAGTTGAGC+CGG + chr1.2:29180557-29180576 MS.gene53594:CDS 40.0%
AATGGATGGAAAGGAAATGC+TGG + chr1.2:29181475-29181494 MS.gene53594:CDS 40.0%
ATGAAACCTTTGGTCTATGG+AGG + chr1.2:29180454-29180473 MS.gene53594:CDS 40.0%
CAATGTACCATCTTGGCTTA+AGG + chr1.2:29181227-29181246 MS.gene53594:CDS 40.0%
CCATTTCCAAATGGATGGAA+AGG + chr1.2:29181466-29181485 MS.gene53594:CDS 40.0%
CCTTTCCATCCATTTGGAAA+TGG - chr1.2:29181469-29181488 None:intergenic 40.0%
CTTAATCCTCCATAGACCAA+AGG - chr1.2:29180463-29180482 None:intergenic 40.0%
GAGCTTCTAACAACCATTGA+TGG - chr1.2:29180735-29180754 None:intergenic 40.0%
GATTCTGTTGTTCTTGCTAC+TGG + chr1.2:29181195-29181214 MS.gene53594:CDS 40.0%
GCACTTGAGAAAGTTAGATC+TGG + chr1.2:29181093-29181112 MS.gene53594:CDS 40.0%
GCATTTCCTTTCCATCCATT+TGG - chr1.2:29181475-29181494 None:intergenic 40.0%
GGTCTTAAAAGGCCATGTAT+GGG + chr1.2:29181018-29181037 MS.gene53594:CDS 40.0%
GTATATTTGTAGGTGGCTTG+TGG + chr1.2:29180521-29180540 MS.gene53594:CDS 40.0%
GTGAATGGACCTGTTATAGT+TGG + chr1.2:29180144-29180163 MS.gene53594:CDS 40.0%
GTGATCAGGGAAAGGAAAAT+TGG - chr1.2:29180325-29180344 None:intergenic 40.0%
TATGAAGCACAGACACTCTT+CGG - chr1.2:29181344-29181363 None:intergenic 40.0%
TCTTCGGATTAAATGTGTCC+TGG - chr1.2:29181328-29181347 None:intergenic 40.0%
TTGGGGAATGTCGAAAAGTA+TGG + chr1.2:29180997-29181016 MS.gene53594:CDS 40.0%
TTTACAAGGAGAGGACTTTC+TGG + chr1.2:29181514-29181533 MS.gene53594:CDS 40.0%
! AATGCTGGTCTATATGCTGT+TGG + chr1.2:29181490-29181509 MS.gene53594:CDS 40.0%
! TCGAATGTTTGAGACATTGG+TGG - chr1.2:29180090-29180109 None:intergenic 40.0%
! TGGTCTTAAAAGGCCATGTA+TGG + chr1.2:29181017-29181036 MS.gene53594:CDS 40.0%
!! AATGTTCTTGTTGTTGGCTG+TGG + chr1.2:29180660-29180679 MS.gene53594:CDS 40.0%
!! CGGTTTTTGAGAATGTCTTC+GGG - chr1.2:29180114-29180133 None:intergenic 40.0%
!! GGGAAAGTTGAACTTGTTGA+TGG + chr1.2:29181156-29181175 MS.gene53594:CDS 40.0%
!! GGTTTTTGAGAATGTCTTCG+GGG - chr1.2:29180113-29180132 None:intergenic 40.0%
!! TTCGAAGGTTTGGCTGATTT+TGG + chr1.2:29180582-29180601 MS.gene53594:CDS 40.0%
AGCAGTTGCAGCTTGTCTTA+AGG + chr1.2:29180185-29180204 MS.gene53594:CDS 45.0%
CTAACTGCATTGCTTCCCTT+TGG + chr1.2:29180241-29180260 MS.gene53594:CDS 45.0%
GCTGTTGGATTTACAAGGAG+AGG + chr1.2:29181505-29181524 MS.gene53594:CDS 45.0%
GGTATTCAGGGAAGTGATCA+GGG - chr1.2:29180338-29180357 None:intergenic 45.0%
GGTTGCTACCGGTGAAAATT+CGG + chr1.2:29180542-29180561 MS.gene53594:CDS 45.0%
GTAGGTTCGATTCTGCCAAA+GGG - chr1.2:29180259-29180278 None:intergenic 45.0%
TATACGTGCCTGTGTTGTGT+CGG + chr1.2:29181277-29181296 MS.gene53594:intron 45.0%
! AGGACTTTCTGGTGCTTCAT+TGG + chr1.2:29181525-29181544 MS.gene53594:CDS 45.0%
! CAATGCAGTTAGCTCTTTCG+AGG - chr1.2:29180233-29180252 None:intergenic 45.0%
! GGACGACGAAAGGAACATTT+TGG - chr1.2:29180212-29180231 None:intergenic 45.0%
! GGGTCGAATGTTTGAGACAT+TGG - chr1.2:29180093-29180112 None:intergenic 45.0%
! GTTGTTGGCTGTGGAAATTC+TGG + chr1.2:29180669-29180688 MS.gene53594:CDS 45.0%
!! AGCTCTAAAGGTCCCATACA+TGG - chr1.2:29181033-29181052 None:intergenic 45.0%
!! GAAGGTTTGGCTGATTTTGG+TGG + chr1.2:29180585-29180604 MS.gene53594:CDS 45.0%
!! GGTCTGACTCGTGTGATTTT+GGG + chr1.2:29180979-29180998 MS.gene53594:CDS 45.0%
!! GTCTGACTCGTGTGATTTTG+GGG + chr1.2:29180980-29180999 MS.gene53594:CDS 45.0%
!! TGGTCTGACTCGTGTGATTT+TGG + chr1.2:29180978-29180997 MS.gene53594:CDS 45.0%
AAACAGTGGCTGCACGTCAT+AGG + chr1.2:29181611-29181630 MS.gene53594:CDS 50.0%
AAAGTTGAGCCGGAGTTCGA+AGG + chr1.2:29180567-29180586 MS.gene53594:CDS 50.0%
ATAGTTGGAGCTGGTCCATC+AGG + chr1.2:29180159-29180178 MS.gene53594:CDS 50.0%
CGTAGGTTCGATTCTGCCAA+AGG - chr1.2:29180260-29180279 None:intergenic 50.0%
GGACCAGCTCCAACTATAAC+AGG - chr1.2:29180156-29180175 None:intergenic 50.0%
GGACCTGTTATAGTTGGAGC+TGG + chr1.2:29180150-29180169 MS.gene53594:CDS 50.0%
GGGTATTCAGGGAAGTGATC+AGG - chr1.2:29180339-29180358 None:intergenic 50.0%
GTCTGATACCGACACAACAC+AGG - chr1.2:29181288-29181307 None:intergenic 50.0%
TCAGCCAAACCTTCGAACTC+CGG - chr1.2:29180579-29180598 None:intergenic 50.0%
TCAGGGAAGTGATCAGGGAA+AGG - chr1.2:29180333-29180352 None:intergenic 50.0%
TGGCTGTGGAAATTCTGGCA+TGG + chr1.2:29180674-29180693 MS.gene53594:CDS 50.0%
CACGACACATGTCTGACACC+AGG + chr1.2:29181307-29181326 MS.gene53594:intron 55.0%
GCTCTTTCGAGGACGACGAA+AGG - chr1.2:29180222-29180241 None:intergenic 55.0%
GCTGCAACTGCTAAGCCTGA+TGG - chr1.2:29180177-29180196 None:intergenic 55.0%
TGAGCCGGAGTTCGAAGGTT+TGG + chr1.2:29180572-29180591 MS.gene53594:CDS 55.0%
! AGGTGGCTTGTGGTTGCTAC+CGG + chr1.2:29180531-29180550 MS.gene53594:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 29180084 29181654 29180084 ID=MS.gene53594
chr1.2 mRNA 29180084 29181654 29180084 ID=MS.gene53594.t1;Parent=MS.gene53594
chr1.2 exon 29180084 29180755 29180084 ID=MS.gene53594.t1.exon1;Parent=MS.gene53594.t1
chr1.2 CDS 29180084 29180755 29180084 ID=cds.MS.gene53594.t1;Parent=MS.gene53594.t1
chr1.2 exon 29180877 29181248 29180877 ID=MS.gene53594.t1.exon2;Parent=MS.gene53594.t1
chr1.2 CDS 29180877 29181248 29180877 ID=cds.MS.gene53594.t1;Parent=MS.gene53594.t1
chr1.2 exon 29181427 29181654 29181427 ID=MS.gene53594.t1.exon3;Parent=MS.gene53594.t1
chr1.2 CDS 29181427 29181654 29181427 ID=cds.MS.gene53594.t1;Parent=MS.gene53594.t1
Gene Sequence

>MS.gene53594

ATGCCACCAATGTCTCAAACATTCGACCCCGAAGACATTCTCAAAAACCGTTGCATATTAGTGAATGGACCTGTTATAGTTGGAGCTGGTCCATCAGGCTTAGCAGTTGCAGCTTGTCTTAAGGACCAAAATGTTCCTTTCGTCGTCCTCGAAAGAGCTAACTGCATTGCTTCCCTTTGGCAGAATCGAACCTACGATCGTCTTAAACTTCATCTTCCTAAACAATTGTGTCAACTACCCAATTTTCCTTTCCCTGATCACTTCCCTGAATACCCTACAAAATTTCAGTTCATAAGTTACCTCGAATCATATGCTAAAAACTTTAACATAACACCAAATTTCAATGAAACAGTGCTATCTGCTAAGTATGATGAAACCTTTGGTCTATGGAGGATTAAGAGCAATAGGATAAAAAGTGATAAAGTTATTGAAGTTGAGTATATTTGTAGGTGGCTTGTGGTTGCTACCGGTGAAAATTCGGAGAAAGTTGAGCCGGAGTTCGAAGGTTTGGCTGATTTTGGTGGAAATGTTATGCATGCTTGTGACTATAAATCTGGTGTGAATCATAGTGGAAAAAATGTTCTTGTTGTTGGCTGTGGAAATTCTGGCATGGAAGTTTCTCTTGATCTTTGTAACCATAATGCAAATCCATCAATGGTTGTTAGAAGCTCGGTGAGTACTTAATCGAAAATTAATTACTTCAATTAATTATGTTAATCTTGATTCGTAGTTTGCATTTTTATGTGTATAGATTGTGACCATCTTTATTTTTTTTGTGATTTTTGATTAATAGGTTCATGTGTTACCAAGGGAAATATTTGGAAAATCTACTTATGAGGTAGCTGTTATGTTGATGAAAAGGTTACCAATTTGGATGGTCGATAAGATATTGCTTGGTCTGACTCGTGTGATTTTGGGGAATGTCGAAAAGTATGGTCTTAAAAGGCCATGTATGGGACCTTTAGAGCTTAAGAACACTTCAGGGAAGACACCAGTTTTAGATATTGGAGCACTTGAGAAAGTTAGATCTGGTCAAATTAAAGTTGTTCCTGGGATAAAGAAATTTTCTCAAGGGAAAGTTGAACTTGTTGATGGAAAAGTTCTTGATATTGATTCTGTTGTTCTTGCTACTGGCTATAGAAGCAATGTACCATCTTGGCTTAAGGTTAGTTTGTTTAGTCCTTCTTTGTAATTATACGTGCCTGTGTTGTGTCGGTATCAGACACGACACATGTCTGACACCAGGACACATTTAATCCGAAGAGTGTCTGTGCTTCATAGTACTTACTAGTTCACTTTGTTTAAGTTGATTATTTAATTTTTCTATGTTATGTATTGTTCAGGAGAATGAATTTTTTTCCAAAGATGGAATGCCAAAAGATCCATTTCCAAATGGATGGAAAGGAAATGCTGGTCTATATGCTGTTGGATTTACAAGGAGAGGACTTTCTGGTGCTTCATTGGATGCAATTAGTGTTTCTCAAGACATTGCTAAAAGTTGGAAAGAAGAAAATAAACAAAGAAAGAAAACAGTGGCTGCACGTCATAGGAGATGCATATCACACTTCTAA
Protein sequence

>MS.gene53594.t1

MPPMSQTFDPEDILKNRCILVNGPVIVGAGPSGLAVAACLKDQNVPFVVLERANCIASLWQNRTYDRLKLHLPKQLCQLPNFPFPDHFPEYPTKFQFISYLESYAKNFNITPNFNETVLSAKYDETFGLWRIKSNRIKSDKVIEVEYICRWLVVATGENSEKVEPEFEGLADFGGNVMHACDYKSGVNHSGKNVLVVGCGNSGMEVSLDLCNHNANPSMVVRSSVHVLPREIFGKSTYEVAVMLMKRLPIWMVDKILLGLTRVILGNVEKYGLKRPCMGPLELKNTSGKTPVLDIGALEKVRSGQIKVVPGIKKFSQGKVELVDGKVLDIDSVVLATGYRSNVPSWLKENEFFSKDGMPKDPFPNGWKGNAGLYAVGFTRRGLSGASLDAISVSQDIAKSWKEENKQRKKTVAARHRRCISHF