AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064951

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064951.t1 MTR_1g046230 98.582 423 6 0 8 430 1 423 0.0 865
MS.gene064951.t1 MTR_7g099330 72.170 424 109 2 8 430 1 416 0.0 634
MS.gene064951.t1 MTR_1g069275 71.875 416 112 2 16 430 10 421 0.0 619
MS.gene064951.t1 MTR_1g008380 60.051 393 153 2 23 414 34 423 1.66e-177 503
MS.gene064951.t1 MTR_6g086870 59.221 385 155 2 27 409 16 400 1.55e-175 497
MS.gene064951.t1 MTR_1g011630 57.732 388 158 1 22 409 7 388 4.80e-174 493
MS.gene064951.t1 MTR_3g109520 59.897 389 153 2 26 413 34 420 3.27e-173 491
MS.gene064951.t1 MTR_7g099160 71.471 333 86 2 99 430 213 537 7.78e-171 489
MS.gene064951.t1 MTR_7g107710 47.340 376 189 5 32 405 7 375 1.11e-118 351
MS.gene064951.t1 MTR_5g033260 44.792 384 201 6 32 412 7 382 5.62e-116 344
MS.gene064951.t1 MTR_7g107690 44.267 375 200 4 32 404 9 376 5.87e-115 342
MS.gene064951.t1 MTR_8g432640 44.974 378 199 5 32 407 7 377 3.56e-114 340
MS.gene064951.t1 MTR_3g088945 42.328 378 205 5 32 405 8 376 3.79e-109 327
MS.gene064951.t1 MTR_3g088925 42.063 378 206 5 32 405 8 376 1.23e-108 326
MS.gene064951.t1 MTR_3g088955 42.063 378 206 5 32 405 8 376 1.71e-107 323
MS.gene064951.t1 MTR_4g051642 42.857 378 202 6 32 405 8 375 2.34e-107 323
MS.gene064951.t1 MTR_3g096030 38.764 178 83 3 32 209 7 158 9.22e-36 129
MS.gene064951.t1 MTR_2g450310 26.963 382 204 19 32 349 6 376 2.77e-16 81.3
MS.gene064951.t1 MTR_2g450510 26.121 379 211 18 32 349 6 376 1.86e-13 72.4
MS.gene064951.t1 MTR_2g044140 25.654 382 220 15 23 346 6 381 5.40e-12 67.8
MS.gene064951.t1 MTR_2g020630 26.984 252 143 11 23 237 6 253 7.31e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064951.t1 AT1G04610 75.291 429 103 2 5 430 9 437 0.0 682
MS.gene064951.t1 AT2G33230 73.872 421 108 2 11 430 12 431 0.0 635
MS.gene064951.t1 AT5G43890 69.031 423 127 3 7 428 3 422 0.0 605
MS.gene064951.t1 AT4G28720 69.007 413 127 1 18 429 12 424 0.0 605
MS.gene064951.t1 AT1G04180 68.689 412 124 3 18 428 12 419 0.0 588
MS.gene064951.t1 AT5G25620 59.446 397 154 3 23 416 24 416 2.71e-174 494
MS.gene064951.t1 AT5G25620 58.293 410 163 4 23 429 24 428 1.82e-173 493
MS.gene064951.t1 AT5G11320 59.173 387 150 2 26 412 12 390 9.28e-169 479
MS.gene064951.t1 AT4G13260 55.665 406 170 3 22 426 19 415 1.03e-168 480
MS.gene064951.t1 AT4G32540 51.889 397 183 2 26 421 16 405 2.18e-160 459
MS.gene064951.t1 AT4G32540 51.629 399 183 3 26 421 16 407 6.29e-159 455
MS.gene064951.t1 AT5G11320 58.485 330 129 2 26 355 12 333 6.33e-137 397
MS.gene064951.t1 AT4G13260 57.823 294 122 1 22 315 19 310 9.40e-129 374
MS.gene064951.t1 AT1G21430 46.277 376 190 6 32 404 10 376 8.08e-117 347
MS.gene064951.t1 AT4G13260 52.761 326 136 4 102 426 4 312 8.68e-115 338
MS.gene064951.t1 AT1G48910 44.000 375 201 5 32 404 6 373 8.71e-115 341
MS.gene064951.t1 AT1G19250 24.866 374 215 15 32 346 14 380 2.32e-16 81.6
MS.gene064951.t1 AT5G45180 25.779 353 198 13 32 346 14 340 4.15e-16 80.5
MS.gene064951.t1 AT1G63370 23.140 242 150 6 33 244 15 250 1.73e-11 65.5
MS.gene064951.t1 AT1G63370 23.045 243 151 6 32 244 14 250 3.82e-11 65.1

Find 88 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAAGGTTTGAGTGATTT+TGG 0.179872 1.4:+30758195 MS.gene064951:CDS
AGCACTGTTTCATTGAAATT+TGG 0.214084 1.4:-30758030 None:intergenic
CCATTTGGAAATGGATCTTT+TGG 0.223238 1.4:-30759057 None:intergenic
TGGTCTAACTCGTGTGATTT+TGG 0.226219 1.4:+30758589 MS.gene064951:CDS
TGATGAAAAGGTTACCAATT+TGG 0.239035 1.4:+30758546 MS.gene064951:CDS
CCATTGATGGATTTGCATTA+TGG 0.257713 1.4:-30758332 None:intergenic
GTGTTACCAAGGGAAATATT+TGG 0.264585 1.4:+30758494 MS.gene064951:CDS
TGTGAAAATCTCTTTATTCC+AGG 0.300615 1.4:-30758743 None:intergenic
TGATCAGGGAATGGAAAATT+TGG 0.303007 1.4:-30757934 None:intergenic
CCTTTCCATCCATTTGGAAA+TGG 0.337340 1.4:-30759066 None:intergenic
TTAGAGCTTAAGAACACTTC+AGG 0.349301 1.4:+30758656 MS.gene064951:CDS
GCATTTCCTTTCCATCCATT+TGG 0.357379 1.4:-30759072 None:intergenic
GGTAGTTGACACAACTGTTT+AGG 0.357469 1.4:-30757913 None:intergenic
ATCTTATCGACCATCCAAAT+TGG 0.360444 1.4:-30758560 None:intergenic
GAGCTTCGAACAACCATTGA+TGG 0.364066 1.4:-30758345 None:intergenic
GGTCAAATTAAAGTTGTTCC+TGG 0.367198 1.4:+30758725 MS.gene064951:CDS
ATGATGAAACCTTTGGTCTA+TGG 0.372822 1.4:+30758064 MS.gene064951:CDS
CAATGTACCATCTTGGCTTA+AGG 0.373912 1.4:+30758838 MS.gene064951:CDS
GGACGACGAAAGGGACATTT+TGG 0.374626 1.4:-30757822 None:intergenic
GTTGTTGGCTGTGGAAATTC+CGG 0.376547 1.4:+30758282 MS.gene064951:CDS
AGGACTCTCTGGTGCTTCAT+TGG 0.381298 1.4:+30759125 MS.gene064951:CDS
GATTCTGTTGTTCTTGCTAC+TGG 0.387617 1.4:+30758806 MS.gene064951:CDS
ATAGTTGGAGCTGGTCCATC+AGG 0.401112 1.4:+30757772 MS.gene064951:CDS
GGGAAAGTTGAACTTGTTGA+TGG 0.406344 1.4:+30758767 MS.gene064951:CDS
TGGTCTTAAAAGGCCATGTA+TGG 0.410967 1.4:+30758628 MS.gene064951:CDS
GGGTATTCAGGGAAGTGATC+AGG 0.411727 1.4:-30757949 None:intergenic
TCACTCAAACCTTCAAATTC+CGG 0.412602 1.4:-30758189 None:intergenic
AGTGCTCCAATATCTAAAAC+TGG 0.412699 1.4:-30758686 None:intergenic
AAGTTGAGTATATTTGTAGA+TGG 0.413818 1.4:+30758127 MS.gene064951:CDS
TATGGAGGATTAAGAGCAAT+AGG 0.415166 1.4:+30758082 MS.gene064951:CDS
GGACCAGCTCCAACTATAAC+AGG 0.417852 1.4:-30757766 None:intergenic
CATGCTTGTGACTATAAATC+TGG 0.421528 1.4:+30758231 MS.gene064951:CDS
CTCAAGACATTGCTAAAAGT+TGG 0.422038 1.4:+30759163 MS.gene064951:CDS
ACCAAAGGTTTCATCATACT+TGG 0.423414 1.4:-30758058 None:intergenic
AAACAGTGGCTGCACGTCAT+AGG 0.425092 1.4:+30759211 MS.gene064951:CDS
TAGCTGTTATGTTGATGAAA+AGG 0.431581 1.4:+30758534 MS.gene064951:CDS
GCCAAGTATGATGAAACCTT+TGG 0.431965 1.4:+30758057 MS.gene064951:CDS
AGATGGCTTGTGGTTGCTAC+TGG 0.437200 1.4:+30758144 MS.gene064951:CDS
GTGAATGGACCTGTTATAGT+TGG 0.443384 1.4:+30757757 MS.gene064951:CDS
AATGTTCTTGTTGTTGGCTG+TGG 0.445856 1.4:+30758273 MS.gene064951:CDS
ATTTGGAAAATCAACTTATG+AGG 0.449241 1.4:+30758511 MS.gene064951:CDS
CTCTTTCGAGGACGACGAAA+GGG 0.458721 1.4:-30757831 None:intergenic
CAATGCAGTTAGCTCTTTCG+AGG 0.466628 1.4:-30757843 None:intergenic
CTAACTGCATTGCTTCCCTT+TGG 0.470550 1.4:+30757854 MS.gene064951:CDS
GAAGTGTTCTTAAGCTCTAA+AGG 0.482235 1.4:-30758653 None:intergenic
CCAAAAGATCCATTTCCAAA+TGG 0.490262 1.4:+30759057 MS.gene064951:CDS
ATCAATGGTTGTTCGAAGCT+CGG 0.495032 1.4:+30758347 MS.gene064951:CDS
AAAGTTGTGCCGGAATTTGA+AGG 0.495529 1.4:+30758180 MS.gene064951:CDS
TAGAGCTTAAGAACACTTCA+GGG 0.496144 1.4:+30758657 MS.gene064951:CDS
TTTACAAGGAGAGGACTCTC+TGG 0.496921 1.4:+30759114 MS.gene064951:CDS
CCATAATGCAAATCCATCAA+TGG 0.497074 1.4:+30758332 MS.gene064951:CDS
AACCGTTGCATATTAGTGAA+TGG 0.502495 1.4:+30757742 MS.gene064951:CDS
GGGTCGAATGTTTGAGACAT+TGG 0.515170 1.4:-30757703 None:intergenic
AAGATCCATTTCCAAATGGA+TGG 0.517361 1.4:+30759061 MS.gene064951:CDS
CCATTTCCAAATGGATGGAA+AGG 0.525251 1.4:+30759066 MS.gene064951:CDS
AAATCTGGTGTGAATCATAG+TGG 0.531964 1.4:+30758246 MS.gene064951:CDS
GCACTTGAGAAAGTTAGATC+TGG 0.536687 1.4:+30758704 MS.gene064951:CDS
ATAGAAGCAATGTACCATCT+TGG 0.538116 1.4:+30758831 MS.gene064951:CDS
AGCTCTAAAGGTCCCATACA+TGG 0.538443 1.4:-30758641 None:intergenic
GAAAAGGTTACCAATTTGGA+TGG 0.539517 1.4:+30758550 MS.gene064951:CDS
GCTCTTTCGAGGACGACGAA+AGG 0.540228 1.4:-30757832 None:intergenic
ATGGTCGATAAGATATTGCT+TGG 0.541229 1.4:+30758569 MS.gene064951:CDS
AATGCTGGTCTATATGCTGT+TGG 0.542155 1.4:+30759090 MS.gene064951:CDS
CGTAGGTTCGATTCTGCCAA+AGG 0.545565 1.4:-30757870 None:intergenic
AATGGATGGAAAGGAAATGC+TGG 0.546827 1.4:+30759075 MS.gene064951:CDS
AAACTAACCTTAAGCCAAGA+TGG 0.557267 1.4:-30758845 None:intergenic
GGACCTGTTATAGTTGGAGC+TGG 0.559689 1.4:+30757763 MS.gene064951:CDS
TATATGCTGTTGGATTTACA+AGG 0.562777 1.4:+30759100 MS.gene064951:CDS
TCAGGGAAGTGATCAGGGAA+TGG 0.567168 1.4:-30757943 None:intergenic
ATCAAGAGAAACTTCCATGC+CGG 0.568876 1.4:-30758301 None:intergenic
GGTATTCAGGGAAGTGATCA+GGG 0.569347 1.4:-30757948 None:intergenic
GCTGCAACTGCTAAGCCTGA+TGG 0.572019 1.4:-30757787 None:intergenic
ATGAAACCTTTGGTCTATGG+AGG 0.575369 1.4:+30758067 MS.gene064951:CDS
GTGAAGTTTAAGACGATCGT+AGG 0.576134 1.4:-30757887 None:intergenic
CTTAATCCTCCATAGACCAA+AGG 0.582115 1.4:-30758073 None:intergenic
GTATATTTGTAGATGGCTTG+TGG 0.586237 1.4:+30758134 MS.gene064951:CDS
GCTGTTGGATTTACAAGGAG+AGG 0.586680 1.4:+30759105 MS.gene064951:CDS
TCGAATGTTTGAGACATTGG+TGG 0.588628 1.4:-30757700 None:intergenic
AAACTCGGAGAAAGTTGTGC+CGG 0.588815 1.4:+30758170 MS.gene064951:CDS
GGTTGCTACTGGTGAAAACT+CGG 0.593121 1.4:+30758155 MS.gene064951:CDS
GGTCTTAAAAGGCCATGTAT+GGG 0.595116 1.4:+30758629 MS.gene064951:CDS
AATAGGTTCATGTGTTACCA+AGG 0.598175 1.4:+30758483 MS.gene064951:intron
GTAGGTTCGATTCTGCCAAA+GGG 0.600880 1.4:-30757869 None:intergenic
ATAGGTTCATGTGTTACCAA+GGG 0.601879 1.4:+30758484 MS.gene064951:intron
GTCCATTCACTAATATGCAA+CGG 0.611348 1.4:-30757744 None:intergenic
GTTGACACAACTGTTTAGGA+AGG 0.611593 1.4:-30757909 None:intergenic
TGGCTGTGGAAATTCCGGCA+TGG 0.677272 1.4:+30758287 MS.gene064951:CDS
TAAACAAAGAAAGAAAACAG+TGG 0.722515 1.4:+30759197 MS.gene064951:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATCACAAAAAATAAAGA+TGG - chr1.4:30758458-30758477 None:intergenic 15.0%
!!! TTTTGTGATTTTTGATTAAT+AGG + chr1.4:30758466-30758485 MS.gene064951:intron 15.0%
!! TTCTTTGTAATTATATGTGT+CGG + chr1.4:30758877-30758896 MS.gene064951:intron 20.0%
!!! AATGAATTTTTTTCCAAAGA+TGG + chr1.4:30759030-30759049 MS.gene064951:CDS 20.0%
!!! TTATGAACTGAAATTTTGTA+GGG - chr1.4:30757972-30757991 None:intergenic 20.0%
! AAGTTGAGTATATTTGTAGA+TGG + chr1.4:30758127-30758146 MS.gene064951:CDS 25.0%
! ATTTGGAAAATCAACTTATG+AGG + chr1.4:30758511-30758530 MS.gene064951:CDS 25.0%
! GACACATATAATTACAAAGA+AGG - chr1.4:30758878-30758897 None:intergenic 25.0%
! GTCTATGTTATATATTGAAC+AGG + chr1.4:30759005-30759024 MS.gene064951:intron 25.0%
! TAAACAAAGAAAGAAAACAG+TGG + chr1.4:30759197-30759216 MS.gene064951:CDS 25.0%
!! CTTATGAACTGAAATTTTGT+AGG - chr1.4:30757973-30757992 None:intergenic 25.0%
!! GAATAAAGAGATTTTCACAA+GGG + chr1.4:30758747-30758766 MS.gene064951:CDS 25.0%
!! TCAAAAAGTATGGTCTTAAA+AGG + chr1.4:30758618-30758637 MS.gene064951:CDS 25.0%
AGCACTGTTTCATTGAAATT+TGG - chr1.4:30758033-30758052 None:intergenic 30.0%
TATATGCTGTTGGATTTACA+AGG + chr1.4:30759100-30759119 MS.gene064951:CDS 30.0%
TGATGAAAAGGTTACCAATT+TGG + chr1.4:30758546-30758565 MS.gene064951:CDS 30.0%
TGTGAAAATCTCTTTATTCC+AGG - chr1.4:30758746-30758765 None:intergenic 30.0%
TTGGGAAATGTCAAAAAGTA+TGG + chr1.4:30758608-30758627 MS.gene064951:CDS 30.0%
! GATTTTCCAAATATTTCCCT+TGG - chr1.4:30758503-30758522 None:intergenic 30.0%
! GGAAAAAATGTTCTTGTTGT+TGG + chr1.4:30758267-30758286 MS.gene064951:CDS 30.0%
! GGAATAAAGAGATTTTCACA+AGG + chr1.4:30758746-30758765 MS.gene064951:CDS 30.0%
! TAGCTGTTATGTTGATGAAA+AGG + chr1.4:30758534-30758553 MS.gene064951:CDS 30.0%
! TTTGAAGGTTTGAGTGATTT+TGG + chr1.4:30758195-30758214 MS.gene064951:CDS 30.0%
!! GAAATTTTGTAGGGTATTCA+GGG - chr1.4:30757963-30757982 None:intergenic 30.0%
!! TGAAATTTTGTAGGGTATTC+AGG - chr1.4:30757964-30757983 None:intergenic 30.0%
!!! AAGACACCAGTTTTAGATAT+TGG + chr1.4:30758680-30758699 MS.gene064951:CDS 30.0%
AAACTAACCTTAAGCCAAGA+TGG - chr1.4:30758848-30758867 None:intergenic 35.0%
AAATCTGGTGTGAATCATAG+TGG + chr1.4:30758246-30758265 MS.gene064951:CDS 35.0%
AACCGTTGCATATTAGTGAA+TGG + chr1.4:30757742-30757761 MS.gene064951:CDS 35.0%
AAGATCCATTTCCAAATGGA+TGG + chr1.4:30759061-30759080 MS.gene064951:CDS 35.0%
AATAGGTTCATGTGTTACCA+AGG + chr1.4:30758483-30758502 MS.gene064951:intron 35.0%
ACCAAAGGTTTCATCATACT+TGG - chr1.4:30758061-30758080 None:intergenic 35.0%
ATAGAAGCAATGTACCATCT+TGG + chr1.4:30758831-30758850 MS.gene064951:CDS 35.0%
ATAGGTTCATGTGTTACCAA+GGG + chr1.4:30758484-30758503 MS.gene064951:intron 35.0%
ATCTTATCGACCATCCAAAT+TGG - chr1.4:30758563-30758582 None:intergenic 35.0%
ATGATGAAACCTTTGGTCTA+TGG + chr1.4:30758064-30758083 MS.gene064951:CDS 35.0%
ATGGTCGATAAGATATTGCT+TGG + chr1.4:30758569-30758588 MS.gene064951:CDS 35.0%
CATGCTTGTGACTATAAATC+TGG + chr1.4:30758231-30758250 MS.gene064951:CDS 35.0%
CCAAAAGATCCATTTCCAAA+TGG + chr1.4:30759057-30759076 MS.gene064951:CDS 35.0%
CCATAATGCAAATCCATCAA+TGG + chr1.4:30758332-30758351 MS.gene064951:CDS 35.0%
CTCAAGACATTGCTAAAAGT+TGG + chr1.4:30759163-30759182 MS.gene064951:CDS 35.0%
GAAAAGGTTACCAATTTGGA+TGG + chr1.4:30758550-30758569 MS.gene064951:CDS 35.0%
GGTCAAATTAAAGTTGTTCC+TGG + chr1.4:30758725-30758744 MS.gene064951:CDS 35.0%
GTATATTTGTAGATGGCTTG+TGG + chr1.4:30758134-30758153 MS.gene064951:CDS 35.0%
GTCCATTCACTAATATGCAA+CGG - chr1.4:30757747-30757766 None:intergenic 35.0%
GTGTTACCAAGGGAAATATT+TGG + chr1.4:30758494-30758513 MS.gene064951:CDS 35.0%
TACTAAGTACTATGAAGCAC+AGG - chr1.4:30758954-30758973 None:intergenic 35.0%
TAGAGCTTAAGAACACTTCA+GGG + chr1.4:30758657-30758676 MS.gene064951:CDS 35.0%
TATGGAGGATTAAGAGCAAT+AGG + chr1.4:30758082-30758101 MS.gene064951:CDS 35.0%
TCACTCAAACCTTCAAATTC+CGG - chr1.4:30758192-30758211 None:intergenic 35.0%
TGATCAGGGAATGGAAAATT+TGG - chr1.4:30757937-30757956 None:intergenic 35.0%
TTAGAGCTTAAGAACACTTC+AGG + chr1.4:30758656-30758675 MS.gene064951:CDS 35.0%
! AGTGCTCCAATATCTAAAAC+TGG - chr1.4:30758689-30758708 None:intergenic 35.0%
! ATCTTTTGGCATTCCATCTT+TGG - chr1.4:30759046-30759065 None:intergenic 35.0%
! CCATTTGGAAATGGATCTTT+TGG - chr1.4:30759060-30759079 None:intergenic 35.0%
! GAAGTGTTCTTAAGCTCTAA+AGG - chr1.4:30758656-30758675 None:intergenic 35.0%
!! ACGGTTTTTGAGAATGTCTT+CGG - chr1.4:30757728-30757747 None:intergenic 35.0%
!! CCATTGATGGATTTGCATTA+TGG - chr1.4:30758335-30758354 None:intergenic 35.0%
AAAGTTGTGCCGGAATTTGA+AGG + chr1.4:30758180-30758199 MS.gene064951:CDS 40.0%
AATGGATGGAAAGGAAATGC+TGG + chr1.4:30759075-30759094 MS.gene064951:CDS 40.0%
ATCAAGAGAAACTTCCATGC+CGG - chr1.4:30758304-30758323 None:intergenic 40.0%
ATCAATGGTTGTTCGAAGCT+CGG + chr1.4:30758347-30758366 MS.gene064951:CDS 40.0%
ATGAAACCTTTGGTCTATGG+AGG + chr1.4:30758067-30758086 MS.gene064951:CDS 40.0%
CAATGTACCATCTTGGCTTA+AGG + chr1.4:30758838-30758857 MS.gene064951:CDS 40.0%
CCATTTCCAAATGGATGGAA+AGG + chr1.4:30759066-30759085 MS.gene064951:CDS 40.0%
CCTTTCCATCCATTTGGAAA+TGG - chr1.4:30759069-30759088 None:intergenic 40.0%
CTTAATCCTCCATAGACCAA+AGG - chr1.4:30758076-30758095 None:intergenic 40.0%
GATTCTGTTGTTCTTGCTAC+TGG + chr1.4:30758806-30758825 MS.gene064951:CDS 40.0%
GCACTTGAGAAAGTTAGATC+TGG + chr1.4:30758704-30758723 MS.gene064951:CDS 40.0%
GCATTTCCTTTCCATCCATT+TGG - chr1.4:30759075-30759094 None:intergenic 40.0%
GCCAAGTATGATGAAACCTT+TGG + chr1.4:30758057-30758076 MS.gene064951:CDS 40.0%
GGTAGTTGACACAACTGTTT+AGG - chr1.4:30757916-30757935 None:intergenic 40.0%
GGTCTTAAAAGGCCATGTAT+GGG + chr1.4:30758629-30758648 MS.gene064951:CDS 40.0%
GTGAATGGACCTGTTATAGT+TGG + chr1.4:30757757-30757776 MS.gene064951:CDS 40.0%
GTTGACACAACTGTTTAGGA+AGG - chr1.4:30757912-30757931 None:intergenic 40.0%
! AATGCTGGTCTATATGCTGT+TGG + chr1.4:30759090-30759109 MS.gene064951:CDS 40.0%
! GAAGGTTTGAGTGATTTTGG+TGG + chr1.4:30758198-30758217 MS.gene064951:CDS 40.0%
! GGTCTAACTCGTGTGATTTT+GGG + chr1.4:30758590-30758609 MS.gene064951:CDS 40.0%
! GTGAAGTTTAAGACGATCGT+AGG - chr1.4:30757890-30757909 None:intergenic 40.0%
! TCGAATGTTTGAGACATTGG+TGG - chr1.4:30757703-30757722 None:intergenic 40.0%
! TGGTCTAACTCGTGTGATTT+TGG + chr1.4:30758589-30758608 MS.gene064951:CDS 40.0%
! TGGTCTTAAAAGGCCATGTA+TGG + chr1.4:30758628-30758647 MS.gene064951:CDS 40.0%
!! AAGGGACATTTTGGTCTTTC+AGG - chr1.4:30757816-30757835 None:intergenic 40.0%
!! AATGTTCTTGTTGTTGGCTG+TGG + chr1.4:30758273-30758292 MS.gene064951:CDS 40.0%
!! CGGTTTTTGAGAATGTCTTC+GGG - chr1.4:30757727-30757746 None:intergenic 40.0%
!! GGGAAAGTTGAACTTGTTGA+TGG + chr1.4:30758767-30758786 MS.gene064951:CDS 40.0%
!! GGTTTTTGAGAATGTCTTCG+GGG - chr1.4:30757726-30757745 None:intergenic 40.0%
AAACTCGGAGAAAGTTGTGC+CGG + chr1.4:30758170-30758189 MS.gene064951:CDS 45.0%
CTAACTGCATTGCTTCCCTT+TGG + chr1.4:30757854-30757873 MS.gene064951:CDS 45.0%
GAGCTTCGAACAACCATTGA+TGG - chr1.4:30758348-30758367 None:intergenic 45.0%
GCTGTTGGATTTACAAGGAG+AGG + chr1.4:30759105-30759124 MS.gene064951:CDS 45.0%
GGTATTCAGGGAAGTGATCA+GGG - chr1.4:30757951-30757970 None:intergenic 45.0%
GGTTGCTACTGGTGAAAACT+CGG + chr1.4:30758155-30758174 MS.gene064951:CDS 45.0%
GTAGGTTCGATTCTGCCAAA+GGG - chr1.4:30757872-30757891 None:intergenic 45.0%
TTTACAAGGAGAGGACTCTC+TGG + chr1.4:30759114-30759133 MS.gene064951:CDS 45.0%
! CAATGCAGTTAGCTCTTTCG+AGG - chr1.4:30757846-30757865 None:intergenic 45.0%
! GGGTCGAATGTTTGAGACAT+TGG - chr1.4:30757706-30757725 None:intergenic 45.0%
! GTTGTTGGCTGTGGAAATTC+CGG + chr1.4:30758282-30758301 MS.gene064951:CDS 45.0%
!! AGCTCTAAAGGTCCCATACA+TGG - chr1.4:30758644-30758663 None:intergenic 45.0%
AAACAGTGGCTGCACGTCAT+AGG + chr1.4:30759211-30759230 MS.gene064951:CDS 50.0%
ACCAGGATACGCCTAATCTG+AGG + chr1.4:30758924-30758943 MS.gene064951:intron 50.0%
AGGACTCTCTGGTGCTTCAT+TGG + chr1.4:30759125-30759144 MS.gene064951:CDS 50.0%
ATAGTTGGAGCTGGTCCATC+AGG + chr1.4:30757772-30757791 MS.gene064951:CDS 50.0%
CGTAGGTTCGATTCTGCCAA+AGG - chr1.4:30757873-30757892 None:intergenic 50.0%
CTCTTTCGAGGACGACGAAA+GGG - chr1.4:30757834-30757853 None:intergenic 50.0%
GATTAGGCGTATCCTGGTGT+CGG - chr1.4:30758922-30758941 None:intergenic 50.0%
GGACCAGCTCCAACTATAAC+AGG - chr1.4:30757769-30757788 None:intergenic 50.0%
GGACCTGTTATAGTTGGAGC+TGG + chr1.4:30757763-30757782 MS.gene064951:CDS 50.0%
GGGTATTCAGGGAAGTGATC+AGG - chr1.4:30757952-30757971 None:intergenic 50.0%
TCAGGGAAGTGATCAGGGAA+TGG - chr1.4:30757946-30757965 None:intergenic 50.0%
TCCTCAGATTAGGCGTATCC+TGG - chr1.4:30758928-30758947 None:intergenic 50.0%
! AGATGGCTTGTGGTTGCTAC+TGG + chr1.4:30758144-30758163 MS.gene064951:CDS 50.0%
! GGACGACGAAAGGGACATTT+TGG - chr1.4:30757825-30757844 None:intergenic 50.0%
GCACAGGCACTCCTCAGATT+AGG - chr1.4:30758938-30758957 None:intergenic 55.0%
GCTCTTTCGAGGACGACGAA+AGG - chr1.4:30757835-30757854 None:intergenic 55.0%
GCTGCAACTGCTAAGCCTGA+TGG - chr1.4:30757790-30757809 None:intergenic 55.0%
TGGCTGTGGAAATTCCGGCA+TGG + chr1.4:30758287-30758306 MS.gene064951:CDS 55.0%
CACGACACGTGTCCGACACC+AGG + chr1.4:30758907-30758926 MS.gene064951:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 30757676 30759254 30757676 ID=MS.gene064951
chr1.4 mRNA 30757676 30759254 30757676 ID=MS.gene064951.t1;Parent=MS.gene064951
chr1.4 exon 30757676 30758368 30757676 ID=MS.gene064951.t1.exon1;Parent=MS.gene064951.t1
chr1.4 CDS 30757676 30758368 30757676 ID=cds.MS.gene064951.t1;Parent=MS.gene064951.t1
chr1.4 exon 30758488 30758859 30758488 ID=MS.gene064951.t1.exon2;Parent=MS.gene064951.t1
chr1.4 CDS 30758488 30758859 30758488 ID=cds.MS.gene064951.t1;Parent=MS.gene064951.t1
chr1.4 exon 30759027 30759254 30759027 ID=MS.gene064951.t1.exon3;Parent=MS.gene064951.t1
chr1.4 CDS 30759027 30759254 30759027 ID=cds.MS.gene064951.t1;Parent=MS.gene064951.t1
Gene Sequence

>MS.gene064951

ATGCATAACATAAGTCTAAACATGCCACCAATGTCTCAAACATTCGACCCCGAAGACATTCTCAAAAACCGTTGCATATTAGTGAATGGACCTGTTATAGTTGGAGCTGGTCCATCAGGCTTAGCAGTTGCAGCTTGCCTGAAAGACCAAAATGTCCCTTTCGTCGTCCTCGAAAGAGCTAACTGCATTGCTTCCCTTTGGCAGAATCGAACCTACGATCGTCTTAAACTTCACCTTCCTAAACAGTTGTGTCAACTACCAAATTTTCCATTCCCTGATCACTTCCCTGAATACCCTACAAAATTTCAGTTCATAAGTTATCTTGAGTCATATGCTAAAAACTTTAACATAACACCAAATTTCAATGAAACAGTGCTTTCTGCCAAGTATGATGAAACCTTTGGTCTATGGAGGATTAAGAGCAATAGGATAAAAAGTGATAAAGTTATTGAAGTTGAGTATATTTGTAGATGGCTTGTGGTTGCTACTGGTGAAAACTCGGAGAAAGTTGTGCCGGAATTTGAAGGTTTGAGTGATTTTGGTGGAAATGTTATGCATGCTTGTGACTATAAATCTGGTGTGAATCATAGTGGAAAAAATGTTCTTGTTGTTGGCTGTGGAAATTCCGGCATGGAAGTTTCTCTTGATCTTTGCAACCATAATGCAAATCCATCAATGGTTGTTCGAAGCTCGGTGAGTACTTAAATGAAAATTAATTACTTCGATTAATTATGTTAATCTTGATTCATACTTTGCATTTTTATGTGTATAGATTCTGACCATCTTTATTTTTTGTGATTTTTGATTAATAGGTTCATGTGTTACCAAGGGAAATATTTGGAAAATCAACTTATGAGGTAGCTGTTATGTTGATGAAAAGGTTACCAATTTGGATGGTCGATAAGATATTGCTTGGTCTAACTCGTGTGATTTTGGGAAATGTCAAAAAGTATGGTCTTAAAAGGCCATGTATGGGACCTTTAGAGCTTAAGAACACTTCAGGGAAGACACCAGTTTTAGATATTGGAGCACTTGAGAAAGTTAGATCTGGTCAAATTAAAGTTGTTCCTGGAATAAAGAGATTTTCACAAGGGAAAGTTGAACTTGTTGATGGAAAAGTTCTTGATATTGATTCTGTTGTTCTTGCTACTGGCTATAGAAGCAATGTACCATCTTGGCTTAAGGTTAGTTTGTTTAGTCCTTCTTTGTAATTATATGTGTCGGTATCAGACACGACACGTGTCCGACACCAGGATACGCCTAATCTGAGGAGTGCCTGTGCTTCATAGTACTTAGTAGTTCACTTTGTTTAAGTTGATTATTTAACTTGTCTATGTTATATATTGAACAGGAGAATGAATTTTTTTCCAAAGATGGAATGCCAAAAGATCCATTTCCAAATGGATGGAAAGGAAATGCTGGTCTATATGCTGTTGGATTTACAAGGAGAGGACTCTCTGGTGCTTCATTGGATGCAATTAGTGTGTCTCAAGACATTGCTAAAAGTTGGAAAGAAGAAAATAAACAAAGAAAGAAAACAGTGGCTGCACGTCATAGGAGATGCATATCACACTTCTAA
Protein sequence

>MS.gene064951.t1

MHNISLNMPPMSQTFDPEDILKNRCILVNGPVIVGAGPSGLAVAACLKDQNVPFVVLERANCIASLWQNRTYDRLKLHLPKQLCQLPNFPFPDHFPEYPTKFQFISYLESYAKNFNITPNFNETVLSAKYDETFGLWRIKSNRIKSDKVIEVEYICRWLVVATGENSEKVVPEFEGLSDFGGNVMHACDYKSGVNHSGKNVLVVGCGNSGMEVSLDLCNHNANPSMVVRSSVHVLPREIFGKSTYEVAVMLMKRLPIWMVDKILLGLTRVILGNVKKYGLKRPCMGPLELKNTSGKTPVLDIGALEKVRSGQIKVVPGIKRFSQGKVELVDGKVLDIDSVVLATGYRSNVPSWLKENEFFSKDGMPKDPFPNGWKGNAGLYAVGFTRRGLSGASLDAISVSQDIAKSWKEENKQRKKTVAARHRRCISHF