AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene038029

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038029.t1 MTR_1g069275 97.150 421 11 1 1 420 1 421 0.0 836
MS.gene038029.t1 MTR_7g099330 78.385 421 85 3 1 420 1 416 0.0 689
MS.gene038029.t1 MTR_1g046230 72.289 415 111 1 10 420 9 423 0.0 622
MS.gene038029.t1 MTR_7g099160 77.508 329 69 2 93 420 213 537 0.0 527
MS.gene038029.t1 MTR_1g008380 63.496 389 140 2 18 404 35 423 0.0 519
MS.gene038029.t1 MTR_3g109520 60.298 403 157 2 4 403 18 420 1.20e-180 510
MS.gene038029.t1 MTR_1g011630 59.162 382 154 1 18 399 9 388 9.74e-178 502
MS.gene038029.t1 MTR_6g086870 59.194 397 156 3 9 399 4 400 2.06e-177 501
MS.gene038029.t1 MTR_7g107710 47.368 380 191 4 26 401 7 381 3.86e-123 362
MS.gene038029.t1 MTR_8g432640 47.467 375 188 4 26 396 7 376 2.10e-119 353
MS.gene038029.t1 MTR_7g107690 44.327 379 202 4 26 400 9 382 2.44e-119 352
MS.gene038029.t1 MTR_5g033260 46.579 380 188 5 26 398 7 378 1.12e-118 351
MS.gene038029.t1 MTR_3g088925 44.267 375 198 5 26 395 8 376 6.87e-116 344
MS.gene038029.t1 MTR_3g088945 44.000 375 199 5 26 395 8 376 5.24e-115 342
MS.gene038029.t1 MTR_3g088955 43.467 375 201 5 26 395 8 376 5.11e-113 337
MS.gene038029.t1 MTR_4g051642 44.800 375 195 6 26 395 8 375 1.34e-112 336
MS.gene038029.t1 MTR_3g096030 38.068 176 83 2 26 199 7 158 9.04e-37 132
MS.gene038029.t1 MTR_2g450510 28.632 234 129 8 27 223 7 239 1.50e-14 75.9
MS.gene038029.t1 MTR_8g037910 22.967 209 131 3 27 208 6 211 1.95e-14 73.6
MS.gene038029.t1 MTR_8g037910 22.967 209 131 3 27 208 6 211 2.58e-14 73.9
MS.gene038029.t1 MTR_3g437580 24.017 229 139 5 27 220 15 243 3.98e-14 73.6
MS.gene038029.t1 MTR_8g037910 22.967 209 131 3 27 208 6 211 4.47e-14 73.9
MS.gene038029.t1 MTR_3g437580 24.017 229 139 5 27 220 15 243 5.97e-14 73.6
MS.gene038029.t1 MTR_2g044140 26.344 372 206 16 27 336 16 381 5.27e-12 67.8
MS.gene038029.t1 MTR_2g043850 25.806 372 208 16 27 336 16 381 2.07e-11 66.2
MS.gene038029.t1 MTR_2g020630 25.417 240 138 9 27 227 16 253 3.79e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038029.t1 AT4G28720 71.934 424 114 2 1 419 1 424 0.0 645
MS.gene038029.t1 AT1G04180 71.122 419 120 1 1 418 1 419 0.0 622
MS.gene038029.t1 AT5G43890 69.194 422 126 2 1 418 1 422 0.0 610
MS.gene038029.t1 AT1G04610 69.212 419 124 1 7 420 19 437 0.0 610
MS.gene038029.t1 AT2G33230 69.082 414 122 2 12 420 19 431 0.0 579
MS.gene038029.t1 AT5G25620 60.349 401 156 2 9 406 16 416 5.88e-178 503
MS.gene038029.t1 AT5G25620 60.606 396 153 2 9 401 16 411 7.15e-177 501
MS.gene038029.t1 AT5G11320 59.843 381 149 1 20 400 12 388 7.17e-172 487
MS.gene038029.t1 AT4G32540 55.335 403 174 3 16 417 12 409 3.56e-171 486
MS.gene038029.t1 AT4G13260 60.526 380 147 2 18 394 21 400 2.57e-170 483
MS.gene038029.t1 AT4G32540 55.309 405 173 4 16 417 12 411 2.22e-169 481
MS.gene038029.t1 AT5G11320 59.202 326 129 1 20 345 12 333 4.52e-142 409
MS.gene038029.t1 AT4G13260 61.034 290 111 1 18 305 21 310 1.15e-130 379
MS.gene038029.t1 AT1G48910 46.950 377 189 5 26 397 6 376 9.90e-125 366
MS.gene038029.t1 AT1G21430 48.128 374 182 5 26 394 10 376 3.24e-122 360
MS.gene038029.t1 AT4G13260 57.785 289 119 2 109 394 9 297 1.67e-113 335
MS.gene038029.t1 AT1G62560 27.230 213 122 6 27 208 15 225 2.81e-19 89.4
MS.gene038029.t1 AT1G62560 27.230 213 122 6 27 208 15 225 5.29e-19 89.4
MS.gene038029.t1 AT5G45180 26.136 352 192 14 27 336 15 340 1.22e-17 85.1
MS.gene038029.t1 AT1G65860 25.561 223 138 4 27 221 15 237 3.42e-16 80.9
MS.gene038029.t1 AT1G12160 26.636 214 124 6 27 209 14 225 1.15e-15 79.0
MS.gene038029.t1 AT1G62620 25.926 243 138 8 27 234 15 250 2.06e-15 77.8
MS.gene038029.t1 AT5G07800 26.147 218 125 5 27 208 18 235 2.10e-15 78.2
MS.gene038029.t1 AT1G63370 25.000 240 144 7 27 234 15 250 3.36e-15 76.6
MS.gene038029.t1 AT1G62620 25.417 240 143 7 27 234 15 250 4.38e-15 77.4
MS.gene038029.t1 AT1G63370 25.000 240 144 7 27 234 15 250 8.16e-15 76.3
MS.gene038029.t1 AT5G61290 26.267 217 126 5 27 209 18 234 1.75e-14 75.5
MS.gene038029.t1 AT1G62540 24.880 209 129 3 41 221 29 237 3.26e-14 74.7
MS.gene038029.t1 AT1G62540 24.880 209 129 3 41 221 29 237 3.61e-14 74.3
MS.gene038029.t1 AT1G62540 24.880 209 129 3 41 221 29 237 3.95e-14 74.3
MS.gene038029.t1 AT1G12200 25.743 202 117 4 41 209 30 231 5.81e-14 73.6
MS.gene038029.t1 AT1G12200 25.743 202 117 4 41 209 30 231 1.51e-13 72.8
MS.gene038029.t1 AT1G12130 23.451 226 142 5 41 235 29 254 6.05e-13 70.9
MS.gene038029.t1 AT1G62570 22.967 209 133 3 41 221 29 237 1.68e-12 69.3
MS.gene038029.t1 AT1G12140 22.857 210 133 3 41 221 29 238 1.95e-12 69.3
MS.gene038029.t1 AT1G12140 22.857 210 133 3 41 221 29 238 1.95e-12 69.3

Find 92 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTCTTTGTTGGATATTC+AGG 0.151113 1.1:+50866073 None:intergenic
GTTGTTGGTTGTGGTAATTC+TGG 0.205623 1.1:-50865764 MS.gene038029:CDS
GGTAGTTGACAGAATTGTTT+AGG 0.250500 1.1:+50866121 None:intergenic
CTCAAGATATTGCTCAAGTT+TGG 0.269888 1.1:-50864540 MS.gene038029:CDS
ATCGTAGCAATGTCCCTTCT+TGG 0.282135 1.1:-50865044 MS.gene038029:CDS
TAGAAAAGTATGGTCTTAAA+AGG 0.282601 1.1:-50865257 MS.gene038029:CDS
CAATTTGTGCAATTTAGAAT+TGG 0.285416 1.1:+50864458 None:intergenic
GCTAAATATGATGAGACTAA+TGG 0.295504 1.1:-50865977 MS.gene038029:CDS
GGTCCTGCTCCTACTATTAT+AGG 0.301581 1.1:+50866268 None:intergenic
CATGCTTGTGATTATAAATC+AGG 0.314519 1.1:-50865815 MS.gene038029:CDS
AAAGGGTAAGACCCCTGTTT+TGG 0.316214 1.1:-50865202 MS.gene038029:CDS
TTACTCAACCCTTCAATATC+AGG 0.327104 1.1:+50865857 None:intergenic
GGCTGTGTTGAACTTGTTAA+TGG 0.328799 1.1:-50865108 MS.gene038029:CDS
TTTATGAACTGTTTCTTTGT+TGG 0.340000 1.1:+50866064 None:intergenic
CAGTTCCTTTCCAACCATTA+GGG 0.343203 1.1:+50864632 None:intergenic
TAGTCTCACATCGTTGCATT+TGG 0.343936 1.1:-50866300 MS.gene038029:CDS
AAGGCCATTGGAGGGTCCTT+TGG 0.345490 1.1:-50865238 MS.gene038029:CDS
ACAGTTCCTTTCCAACCATT+AGG 0.345992 1.1:+50864631 None:intergenic
CAATGTCCCTTCTTGGCTTA+AGG 0.348481 1.1:-50865037 MS.gene038029:intron
TGACTTTGGAAATCCATTCT+TGG 0.361539 1.1:+50864660 None:intergenic
GTAGTTGACAGAATTGTTTA+GGG 0.362984 1.1:+50866122 None:intergenic
CCAAAGTCACCATTCCCTAA+TGG 0.366181 1.1:-50864646 MS.gene038029:CDS
TTAGTAAACCTCTTAATTCC+AGG 0.368388 1.1:+50865132 None:intergenic
TCTTGTGGGAATGGAAAGTT+AGG 0.369111 1.1:+50866100 None:intergenic
CTGTTGGACTTTATGCTGTT+GGG 0.378354 1.1:-50864612 MS.gene038029:CDS
CATCGTTGCATTTGGGTAAA+CGG 0.385627 1.1:-50866292 MS.gene038029:CDS
AATTTGTGCAATTTAGAATT+GGG 0.388229 1.1:+50864459 None:intergenic
AAGGTGCCAATATCCAAAAC+AGG 0.397457 1.1:+50865189 None:intergenic
TTCTATTGTTCTTCGTAGCT+CGG 0.402239 1.1:-50865699 MS.gene038029:intron
AGTCTCACATCGTTGCATTT+GGG 0.410240 1.1:-50866299 MS.gene038029:CDS
AATCTTGTCAACTATCCAAC+CGG 0.410512 1.1:+50865314 None:intergenic
ATACTCAACTTCATTTCCAT+TGG 0.414194 1.1:+50865931 None:intergenic
TTTGGTAATATAGAAAAGTA+TGG 0.417326 1.1:-50865267 MS.gene038029:CDS
CTAAATATGATGAGACTAAT+GGG 0.418507 1.1:-50865976 MS.gene038029:CDS
AGGTCGCTTGTGGTTGCTAC+TGG 0.431631 1.1:-50865902 MS.gene038029:CDS
GATGCAGTTGTTCTTGCTAC+TGG 0.439635 1.1:-50865069 MS.gene038029:CDS
CCATTAGGGAATGGTGACTT+TGG 0.441458 1.1:+50864646 None:intergenic
ACAACAAGGAGTACCCTTCA+TGG 0.462402 1.1:-50866215 MS.gene038029:CDS
TCAGGAAATTCTTGTGGGAA+TGG 0.465607 1.1:+50866091 None:intergenic
ATGAAGTTGAGTATATTTGT+AGG 0.466018 1.1:-50865922 MS.gene038029:CDS
GATATTCAGGAAATTCTTGT+GGG 0.470627 1.1:+50866086 None:intergenic
ACTGTTGGACTTTATGCTGT+TGG 0.470697 1.1:-50864613 MS.gene038029:CDS
ATAGTAGGAGCAGGACCATC+AGG 0.478379 1.1:-50866262 MS.gene038029:CDS
TGGCAGTTATGATGATGAAA+TGG 0.484448 1.1:-50865341 MS.gene038029:CDS
TTTCTCACCTTAAGCCAAGA+AGG 0.485907 1.1:+50865030 None:intergenic
TTTACAAAGAGAGGGCTCTC+TGG 0.487445 1.1:-50864589 MS.gene038029:CDS
TGGGAAATCAACATTTGGAT+TGG 0.487762 1.1:-50865361 MS.gene038029:CDS
GGAATTAAGAGGTTTACTAA+TGG 0.490761 1.1:-50865129 MS.gene038029:CDS
GAGCTACGAAGAACAATAGA+AGG 0.506431 1.1:+50865701 None:intergenic
TTGGAGCTTAAGAACACAAA+GGG 0.508263 1.1:-50865219 MS.gene038029:CDS
GTAAACGGTCCTATAATAGT+AGG 0.514321 1.1:-50866277 MS.gene038029:CDS
TGATCTTTCAAGCACCATGA+AGG 0.516098 1.1:+50866201 None:intergenic
AAGTTGTGCCTGGAATTAAG+AGG 0.518103 1.1:-50865140 MS.gene038029:CDS
GGATATTCAGGAAATTCTTG+TGG 0.520358 1.1:+50866085 None:intergenic
CCTTTCCAACCATTAGGGAA+TGG 0.520534 1.1:+50864637 None:intergenic
ACCTTGGAGAAAATTAGATC+TGG 0.532203 1.1:-50865171 MS.gene038029:CDS
GTATGGTCTTAAAAGGCCAT+TGG 0.535113 1.1:-50865250 MS.gene038029:CDS
TTCTCACCTTAAGCCAAGAA+GGG 0.539788 1.1:+50865031 None:intergenic
GTTGACAGAATTGTTTAGGG+AGG 0.539880 1.1:+50866125 None:intergenic
GCTGTTGGGTTTACAAAGAG+AGG 0.540106 1.1:-50864598 MS.gene038029:CDS
TTTGTGTTCTTAAGCTCCAA+AGG 0.541522 1.1:+50865222 None:intergenic
TGTGATTATAAATCAGGTGA+AGG 0.541872 1.1:-50865809 MS.gene038029:CDS
TTTCTTCTTCGTTATCGACT+AGG 0.550794 1.1:+50866323 None:intergenic
TGGTCTTAAAAGGCCATTGG+AGG 0.553703 1.1:-50865247 MS.gene038029:CDS
TGTGTTGTGCCTGATATTGA+AGG 0.554440 1.1:-50865866 MS.gene038029:CDS
GCTGCTGTTGCTAGACCTGA+TGG 0.555064 1.1:+50866247 None:intergenic
AATGGTTGGAAAGGAACTGT+TGG 0.555476 1.1:-50864628 MS.gene038029:CDS
AGTCACCATTCCCTAATGGT+TGG 0.557817 1.1:-50864642 MS.gene038029:CDS
GAACACACTCGTTGAATCGT+GGG 0.559010 1.1:+50866005 None:intergenic
CCATTCCCTAATGGTTGGAA+AGG 0.559102 1.1:-50864637 MS.gene038029:CDS
ATGATGAGACTAATGGGTTG+TGG 0.559573 1.1:-50865970 MS.gene038029:CDS
TGATGAAATGGTTACCCGGT+TGG 0.560875 1.1:-50865329 MS.gene038029:CDS
GGTCACATAAAAGTTGTGCC+TGG 0.561332 1.1:-50865150 MS.gene038029:CDS
TGGTTGTGGTAATTCTGGAA+TGG 0.564985 1.1:-50865759 MS.gene038029:CDS
CTGTTGGGTTTACAAAGAGA+GGG 0.568492 1.1:-50864597 MS.gene038029:CDS
TGAACACACTCGTTGAATCG+TGG 0.570661 1.1:+50866004 None:intergenic
GATCTTTCAAGCACCATGAA+GGG 0.575566 1.1:+50866202 None:intergenic
GATTTCGAAGTGTTTCGCGT+AGG 0.586522 1.1:+50866030 None:intergenic
GAAGGGTTGAGTAAATTCAA+AGG 0.589620 1.1:-50865848 MS.gene038029:CDS
AGCTCCAAAGGACCCTCCAA+TGG 0.594886 1.1:+50865234 None:intergenic
GGTCCTATAATAGTAGGAGC+AGG 0.599245 1.1:-50866271 MS.gene038029:CDS
AGAGTTGAGACTGTTTCCAA+TGG 0.605340 1.1:-50865947 MS.gene038029:CDS
GTATATTTGTAGGTCGCTTG+TGG 0.619170 1.1:-50865912 MS.gene038029:CDS
AGGTGCCAATATCCAAAACA+GGG 0.629075 1.1:+50865190 None:intergenic
GTGTTGTGCCTGATATTGAA+GGG 0.636186 1.1:-50865865 MS.gene038029:CDS
ATCTTGTCAACTATCCAACC+GGG 0.657284 1.1:+50865315 None:intergenic
GGTCTTAAAAGGCCATTGGA+GGG 0.661835 1.1:-50865246 MS.gene038029:CDS
TTTGGAGCTTAAGAACACAA+AGG 0.673099 1.1:-50865220 MS.gene038029:CDS
ATGATGATGAAATGGTTACC+CGG 0.708498 1.1:-50865333 MS.gene038029:CDS
GCAGCATGTCTTAAACAACA+AGG 0.727523 1.1:-50866229 MS.gene038029:CDS
GGTGCCAATATCCAAAACAG+GGG 0.738091 1.1:+50865191 None:intergenic
CAAATTGCATAGCTTCACTG+TGG 0.767067 1.1:-50866180 MS.gene038029:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAGAAAAATAATTTG+AGG - chr1.1:50865346-50865365 MS.gene038029:CDS 10.0%
!!! TTTTTTTTTTGTACTAATTA+AGG - chr1.1:50865378-50865397 MS.gene038029:CDS 10.0%
!!! GTTAATAACTAATCTTATTT+TGG - chr1.1:50866095-50866114 MS.gene038029:CDS 15.0%
!!! AGCAATTTTAGAAACTAAAT+TGG + chr1.1:50865237-50865256 None:intergenic 20.0%
!!! AGTATTTTACTATTTTTGTG+TGG - chr1.1:50866071-50866090 MS.gene038029:CDS 20.0%
!!! TTTGGTAATATAGAAAAGTA+TGG - chr1.1:50865544-50865563 MS.gene038029:intron 20.0%
! ATACTAATTCCATTTCCAAA+AGG + chr1.1:50866056-50866075 None:intergenic 25.0%
! ATATGATAAGACCCAAAAAA+AGG + chr1.1:50865952-50865971 None:intergenic 25.0%
! ATGAAGTTGAGTATATTTGT+AGG - chr1.1:50864889-50864908 MS.gene038029:intron 25.0%
! CTAAATATGATGAGACTAAT+GGG - chr1.1:50864835-50864854 MS.gene038029:intron 25.0%
! TACTAATTCCATTTCCAAAA+GGG + chr1.1:50866055-50866074 None:intergenic 25.0%
!! AATTAAGGTTGTTGTGTTTT+TGG - chr1.1:50865393-50865412 MS.gene038029:intron 25.0%
!! TAGAAAAGTATGGTCTTAAA+AGG - chr1.1:50865554-50865573 MS.gene038029:intron 25.0%
!! TTTATGAACTGTTTCTTTGT+TGG + chr1.1:50864750-50864769 None:intergenic 25.0%
!!! TGACAAGATTCTTTTGATTT+TGG - chr1.1:50865510-50865529 MS.gene038029:intron 25.0%
!!! TGGTTTTGAAACCTTTTTTT+GGG - chr1.1:50865938-50865957 MS.gene038029:CDS 25.0%
!!! TTGGTTTTGAAACCTTTTTT+TGG - chr1.1:50865937-50865956 MS.gene038029:CDS 25.0%
!!! TTGTGATTTTGTTTATTTCG+AGG - chr1.1:50865303-50865322 MS.gene038029:CDS 25.0%
ACTAATTCCATTTCCAAAAG+GGG + chr1.1:50866054-50866073 None:intergenic 30.0%
ATACTCAACTTCATTTCCAT+TGG + chr1.1:50864883-50864902 None:intergenic 30.0%
CATGCTTGTGATTATAAATC+AGG - chr1.1:50864996-50865015 MS.gene038029:intron 30.0%
GATATTCAGGAAATTCTTGT+GGG + chr1.1:50864728-50864747 None:intergenic 30.0%
GCTAAATATGATGAGACTAA+TGG - chr1.1:50864834-50864853 MS.gene038029:intron 30.0%
GGAATTAAGAGGTTTACTAA+TGG - chr1.1:50865682-50865701 MS.gene038029:intron 30.0%
GTAGTTGACAGAATTGTTTA+GGG + chr1.1:50864692-50864711 None:intergenic 30.0%
TGCAAATTTGATGTTTGGTT+CGG - chr1.1:50865901-50865920 MS.gene038029:CDS 30.0%
TGTGATTATAAATCAGGTGA+AGG - chr1.1:50865002-50865021 MS.gene038029:intron 30.0%
TGTTTCTTTGTTGGATATTC+AGG + chr1.1:50864741-50864760 None:intergenic 30.0%
TTAGTAAACCTCTTAATTCC+AGG + chr1.1:50865682-50865701 None:intergenic 30.0%
! TTTTGCCTAGAGAAGTTTTT+GGG - chr1.1:50865431-50865450 MS.gene038029:intron 30.0%
! TTTTTACCTTTTTCCCCTTT+TGG - chr1.1:50866038-50866057 MS.gene038029:CDS 30.0%
!! GTTTTTGGGAAATCAACATT+TGG - chr1.1:50865445-50865464 MS.gene038029:intron 30.0%
!! TTGCTCTAAAAGAACTAATG+TGG - chr1.1:50865252-50865271 MS.gene038029:CDS 30.0%
!! TTTGGTTCATTTTTGTGTGT+AGG - chr1.1:50866113-50866132 MS.gene038029:CDS 30.0%
!! TTTTAGAGGGAAGAAAGTTT+TGG - chr1.1:50865025-50865044 MS.gene038029:intron 30.0%
!!! AGATTCTTTTGATTTTGGCT+TGG - chr1.1:50865515-50865534 MS.gene038029:intron 30.0%
!!! GGTCGAAGATTTTTAAGTTT+GGG - chr1.1:50865273-50865292 MS.gene038029:CDS 30.0%
!!! GTCGAAGATTTTTAAGTTTG+GGG - chr1.1:50865274-50865293 MS.gene038029:CDS 30.0%
!!! TGGTCGAAGATTTTTAAGTT+TGG - chr1.1:50865272-50865291 MS.gene038029:CDS 30.0%
AATCTTGTCAACTATCCAAC+CGG + chr1.1:50865500-50865519 None:intergenic 35.0%
ACAGTTGAACCATGATTCAT+AGG - chr1.1:50865875-50865894 MS.gene038029:CDS 35.0%
ACCTTGGAGAAAATTAGATC+TGG - chr1.1:50865640-50865659 MS.gene038029:intron 35.0%
CTCAAGATATTGCTCAAGTT+TGG - chr1.1:50866271-50866290 MS.gene038029:CDS 35.0%
GAAGGGTTGAGTAAATTCAA+AGG - chr1.1:50864963-50864982 MS.gene038029:intron 35.0%
GATTTCCCAAAAACTTCTCT+AGG + chr1.1:50865439-50865458 None:intergenic 35.0%
GGATATTCAGGAAATTCTTG+TGG + chr1.1:50864729-50864748 None:intergenic 35.0%
GGTAGTTGACAGAATTGTTT+AGG + chr1.1:50864693-50864712 None:intergenic 35.0%
GGTCTTGCAAATTTGATGTT+TGG - chr1.1:50865896-50865915 MS.gene038029:CDS 35.0%
GTAAACGGTCCTATAATAGT+AGG - chr1.1:50864534-50864553 MS.gene038029:CDS 35.0%
TGGGAAATCAACATTTGGAT+TGG - chr1.1:50865450-50865469 MS.gene038029:intron 35.0%
TTACTCAACCCTTCAATATC+AGG + chr1.1:50864957-50864976 None:intergenic 35.0%
TTCTATTGTTCTTCGTAGCT+CGG - chr1.1:50865112-50865131 MS.gene038029:CDS 35.0%
TTGGAGCTTAAGAACACAAA+GGG - chr1.1:50865592-50865611 MS.gene038029:intron 35.0%
TTTGCAAGACCTATGAATCA+TGG + chr1.1:50865887-50865906 None:intergenic 35.0%
TTTGTGTTCTTAAGCTCCAA+AGG + chr1.1:50865592-50865611 None:intergenic 35.0%
! ACCAGATCTAATTTTCTCCA+AGG + chr1.1:50865644-50865663 None:intergenic 35.0%
! ATGATGATGAAATGGTTACC+CGG - chr1.1:50865478-50865497 MS.gene038029:intron 35.0%
! GGTGAATTTTTCTCCAAGAA+TGG - chr1.1:50866138-50866157 MS.gene038029:CDS 35.0%
! GTTTTGCCTAGAGAAGTTTT+TGG - chr1.1:50865430-50865449 MS.gene038029:intron 35.0%
! TGACTTTGGAAATCCATTCT+TGG + chr1.1:50866154-50866173 None:intergenic 35.0%
! TGGCAGTTATGATGATGAAA+TGG - chr1.1:50865470-50865489 MS.gene038029:intron 35.0%
! TTTCTTCTTCGTTATCGACT+AGG + chr1.1:50864491-50864510 None:intergenic 35.0%
! TTTGGAGCTTAAGAACACAA+AGG - chr1.1:50865591-50865610 MS.gene038029:intron 35.0%
!! AAATCAGGTGAAGGTTTTAG+AGG - chr1.1:50865011-50865030 MS.gene038029:intron 35.0%
!! GTTCATTTTTGTGTGTAGGA+AGG - chr1.1:50866117-50866136 MS.gene038029:CDS 35.0%
!! TTCAACTGTTTTGAACTGCT+CGG + chr1.1:50865864-50865883 None:intergenic 35.0%
!!! AAAGTTTTGGTTGTTGGTTG+TGG - chr1.1:50865038-50865057 MS.gene038029:CDS 35.0%
!!! AATCAGGTGAAGGTTTTAGA+GGG - chr1.1:50865012-50865031 MS.gene038029:intron 35.0%
!!! ATTTTGGCTTGGTTAGTGTT+TGG - chr1.1:50865526-50865545 MS.gene038029:intron 35.0%
!!! TGTTGTGTTTTTGGTTGAAC+AGG - chr1.1:50865402-50865421 MS.gene038029:intron 35.0%
AAGTTGTGCCTGGAATTAAG+AGG - chr1.1:50865671-50865690 MS.gene038029:intron 40.0%
AATGGTTGGAAAGGAACTGT+TGG - chr1.1:50866183-50866202 MS.gene038029:CDS 40.0%
ACAGTTCCTTTCCAACCATT+AGG + chr1.1:50866183-50866202 None:intergenic 40.0%
ACTGTTGGACTTTATGCTGT+TGG - chr1.1:50866198-50866217 MS.gene038029:CDS 40.0%
AGAGTTGAGACTGTTTCCAA+TGG - chr1.1:50864864-50864883 MS.gene038029:intron 40.0%
AGGTGCCAATATCCAAAACA+GGG + chr1.1:50865624-50865643 None:intergenic 40.0%
AGTCTCACATCGTTGCATTT+GGG - chr1.1:50864512-50864531 MS.gene038029:CDS 40.0%
ATCTTGTCAACTATCCAACC+GGG + chr1.1:50865499-50865518 None:intergenic 40.0%
CAAATTGCATAGCTTCACTG+TGG - chr1.1:50864631-50864650 MS.gene038029:CDS 40.0%
CAGTTCCTTTCCAACCATTA+GGG + chr1.1:50866182-50866201 None:intergenic 40.0%
CATCGTTGCATTTGGGTAAA+CGG - chr1.1:50864519-50864538 MS.gene038029:CDS 40.0%
CCATTTCCAAAAGGGGAAAA+AGG + chr1.1:50866047-50866066 None:intergenic 40.0%
CTGTTGGACTTTATGCTGTT+GGG - chr1.1:50866199-50866218 MS.gene038029:CDS 40.0%
CTGTTGGGTTTACAAAGAGA+GGG - chr1.1:50866214-50866233 MS.gene038029:CDS 40.0%
GAGCTACGAAGAACAATAGA+AGG + chr1.1:50865113-50865132 None:intergenic 40.0%
GATCTTTCAAGCACCATGAA+GGG + chr1.1:50864612-50864631 None:intergenic 40.0%
GCAGCATGTCTTAAACAACA+AGG - chr1.1:50864582-50864601 MS.gene038029:CDS 40.0%
GTATATTTGTAGGTCGCTTG+TGG - chr1.1:50864899-50864918 MS.gene038029:intron 40.0%
GTGTTGTGCCTGATATTGAA+GGG - chr1.1:50864946-50864965 MS.gene038029:intron 40.0%
GTTGACAGAATTGTTTAGGG+AGG + chr1.1:50864689-50864708 None:intergenic 40.0%
TAGTCTCACATCGTTGCATT+TGG - chr1.1:50864511-50864530 MS.gene038029:CDS 40.0%
TCAGGAAATTCTTGTGGGAA+TGG + chr1.1:50864723-50864742 None:intergenic 40.0%
TCTTGTGGGAATGGAAAGTT+AGG + chr1.1:50864714-50864733 None:intergenic 40.0%
TGATCTTTCAAGCACCATGA+AGG + chr1.1:50864613-50864632 None:intergenic 40.0%
TGTGTTGTGCCTGATATTGA+AGG - chr1.1:50864945-50864964 MS.gene038029:intron 40.0%
TTCTCACCTTAAGCCAAGAA+GGG + chr1.1:50865783-50865802 None:intergenic 40.0%
TTTCTCACCTTAAGCCAAGA+AGG + chr1.1:50865784-50865803 None:intergenic 40.0%
! AAGGTGCCAATATCCAAAAC+AGG + chr1.1:50865625-50865644 None:intergenic 40.0%
! GTATGGTCTTAAAAGGCCAT+TGG - chr1.1:50865561-50865580 MS.gene038029:intron 40.0%
! GTTGTTGGTTGTGGTAATTC+TGG - chr1.1:50865047-50865066 MS.gene038029:CDS 40.0%
! TGGTTGTGGTAATTCTGGAA+TGG - chr1.1:50865052-50865071 MS.gene038029:CDS 40.0%
!! AAGACCCCTGTTTTGGATAT+TGG - chr1.1:50865616-50865635 MS.gene038029:intron 40.0%
!! ATGATGAGACTAATGGGTTG+TGG - chr1.1:50864841-50864860 MS.gene038029:intron 40.0%
!! CCTTTTTCCCCTTTTGGAAA+TGG - chr1.1:50866044-50866063 MS.gene038029:CDS 40.0%
!! GGCTGTGTTGAACTTGTTAA+TGG - chr1.1:50865703-50865722 MS.gene038029:CDS 40.0%
!! TGTTTTGGATATTGGCACCT+TGG - chr1.1:50865624-50865643 MS.gene038029:intron 40.0%
!!! GGGAAGAAAGTTTTGGTTGT+TGG - chr1.1:50865032-50865051 MS.gene038029:intron 40.0%
!!! GTTCGGTTTTGAAACATCGT+TGG - chr1.1:50865918-50865937 MS.gene038029:CDS 40.0%
AGTCACCATTCCCTAATGGT+TGG - chr1.1:50866169-50866188 MS.gene038029:CDS 45.0%
ATCGTAGCAATGTCCCTTCT+TGG - chr1.1:50865767-50865786 MS.gene038029:CDS 45.0%
CAATGTCCCTTCTTGGCTTA+AGG - chr1.1:50865774-50865793 MS.gene038029:CDS 45.0%
CCAAAGTCACCATTCCCTAA+TGG - chr1.1:50866165-50866184 MS.gene038029:CDS 45.0%
CCATTAGGGAATGGTGACTT+TGG + chr1.1:50866168-50866187 None:intergenic 45.0%
CCATTCCCTAATGGTTGGAA+AGG - chr1.1:50866174-50866193 MS.gene038029:CDS 45.0%
CCTTTCCAACCATTAGGGAA+TGG + chr1.1:50866177-50866196 None:intergenic 45.0%
GAACACACTCGTTGAATCGT+GGG + chr1.1:50864809-50864828 None:intergenic 45.0%
GATGCAGTTGTTCTTGCTAC+TGG - chr1.1:50865742-50865761 MS.gene038029:CDS 45.0%
GCTGTTGGGTTTACAAAGAG+AGG - chr1.1:50866213-50866232 MS.gene038029:CDS 45.0%
GGTCACATAAAAGTTGTGCC+TGG - chr1.1:50865661-50865680 MS.gene038029:intron 45.0%
GGTCCTATAATAGTAGGAGC+AGG - chr1.1:50864540-50864559 MS.gene038029:CDS 45.0%
GGTCCTGCTCCTACTATTAT+AGG + chr1.1:50864546-50864565 None:intergenic 45.0%
GGTCTTAAAAGGCCATTGGA+GGG - chr1.1:50865565-50865584 MS.gene038029:intron 45.0%
GGTGCCAATATCCAAAACAG+GGG + chr1.1:50865623-50865642 None:intergenic 45.0%
TGAACACACTCGTTGAATCG+TGG + chr1.1:50864810-50864829 None:intergenic 45.0%
TGATGAAATGGTTACCCGGT+TGG - chr1.1:50865482-50865501 MS.gene038029:intron 45.0%
TTTACAAAGAGAGGGCTCTC+TGG - chr1.1:50866222-50866241 MS.gene038029:CDS 45.0%
! AAAGGGTAAGACCCCTGTTT+TGG - chr1.1:50865609-50865628 MS.gene038029:intron 45.0%
! GATTTCGAAGTGTTTCGCGT+AGG + chr1.1:50864784-50864803 None:intergenic 45.0%
! TGGTCTTAAAAGGCCATTGG+AGG - chr1.1:50865564-50865583 MS.gene038029:intron 45.0%
!! ACAACAAGGAGTACCCTTCA+TGG - chr1.1:50864596-50864615 MS.gene038029:CDS 45.0%
!!! AAAAAAATTATTTTATGTAT+TGG + chr1.1:50865991-50866010 None:intergenic 5.0%
ATAGTAGGAGCAGGACCATC+AGG - chr1.1:50864549-50864568 MS.gene038029:CDS 50.0%
AAGGCCATTGGAGGGTCCTT+TGG - chr1.1:50865573-50865592 MS.gene038029:intron 55.0%
AGCTCCAAAGGACCCTCCAA+TGG + chr1.1:50865580-50865599 None:intergenic 55.0%
AGGTCGCTTGTGGTTGCTAC+TGG - chr1.1:50864909-50864928 MS.gene038029:intron 55.0%
GCTGCTGTTGCTAGACCTGA+TGG + chr1.1:50864567-50864586 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 50864471 50866362 50864471 ID=MS.gene038029
chr1.1 mRNA 50864471 50866362 50864471 ID=MS.gene038029.t1;Parent=MS.gene038029
chr1.1 exon 50865700 50866362 50865700 ID=MS.gene038029.t1.exon1;Parent=MS.gene038029.t1
chr1.1 CDS 50865700 50866362 50865700 ID=cds.MS.gene038029.t1;Parent=MS.gene038029.t1
chr1.1 exon 50865038 50865409 50865038 ID=MS.gene038029.t1.exon2;Parent=MS.gene038029.t1
chr1.1 CDS 50865038 50865409 50865038 ID=cds.MS.gene038029.t1;Parent=MS.gene038029.t1
chr1.1 exon 50864471 50864698 50864471 ID=MS.gene038029.t1.exon3;Parent=MS.gene038029.t1
chr1.1 CDS 50864471 50864698 50864471 ID=cds.MS.gene038029.t1;Parent=MS.gene038029.t1
Gene Sequence

>MS.gene038029

ATGGAGAACTTGATTCGCCTAGTCGATAACGAAGAAGAAATAGTCTCACATCGTTGCATTTGGGTAAACGGTCCTATAATAGTAGGAGCAGGACCATCAGGTCTAGCAACAGCAGCATGTCTTAAACAACAAGGAGTACCCTTCATGGTGCTTGAAAGATCAAATTGCATAGCTTCACTGTGGCAAAAAAGAACATACGACAGATTAAAACTTCACCTCCCTAAACAATTCTGTCAACTACCTAACTTTCCATTCCCACAAGAATTTCCTGAATATCCAACAAAGAAACAGTTCATAAACTATCTTGAATCCTACGCGAAACACTTCGAAATCAACCCACGATTCAACGAGTGTGTTCAATCTGCTAAATATGATGAGACTAATGGGTTGTGGAGAGTTGAGACTGTTTCCAATGGAAATGAAGTTGAGTATATTTGTAGGTCGCTTGTGGTTGCTACTGGTGAGAATGCAGAGTGTGTTGTGCCTGATATTGAAGGGTTGAGTAAATTCAAAGGTGAAGTTATTCATGCTTGTGATTATAAATCAGGTGAAGGTTTTAGAGGGAAGAAAGTTTTGGTTGTTGGTTGTGGTAATTCTGGAATGGAACTCTCACTTGATCTTTGCAATCATAATGCATCACCTTCTATTGTTCTTCGTAGCTCGGTAAGTACTTGAAATAAGTCAATTTAGTCTCTGAAATAAACGAAACTATAAAAAAATAATTTCTTGAAAATCTTTGACTACACAAGTTTTTTCGAGTCAGCCAATTTAGTTTCTAAAATTGCTCTAAAAGAACTAATGTGGTCGAAGATTTTTAAGTTTGGGGAATAATTTGTGATTTTGTTTATTTCGAGGACTAAATTCGTTGACAATTTTTTTTAAGAAAAATAATTTGAGGATGATGTTTTTTTTTTTTTGTACTAATTAAGGTTGTTGTGTTTTTGGTTGAACAGGTTCATGTTTTGCCTAGAGAAGTTTTTGGGAAATCAACATTTGGATTGGCAGTTATGATGATGAAATGGTTACCCGGTTGGATAGTTGACAAGATTCTTTTGATTTTGGCTTGGTTAGTGTTTGGTAATATAGAAAAGTATGGTCTTAAAAGGCCATTGGAGGGTCCTTTGGAGCTTAAGAACACAAAGGGTAAGACCCCTGTTTTGGATATTGGCACCTTGGAGAAAATTAGATCTGGTCACATAAAAGTTGTGCCTGGAATTAAGAGGTTTACTAATGGCTGTGTTGAACTTGTTAATGGTGAAAAGAGTCAAGTTGATGCAGTTGTTCTTGCTACTGGTTATCGTAGCAATGTCCCTTCTTGGCTTAAGGTGAGAAATTAAATTTTTATTTTTTAATTTATTTTGTGTGTTTGTATAAATTTTTAAAAATTGAACCGAGCAGTTCAAAACAGTTGAACCATGATTCATAGGTCTTGCAAATTTGATGTTTGGTTCGGTTTTGAAACATCGTTGGTTTTGAAACCTTTTTTTGGGTCTTATCATATGTTTCTCTTTTTTCTTCCAATACATAAAATAATTTTTTTATGTTGTTTTGAAGTTTTAGAAGCTTCTTTTTACCTTTTTCCCCTTTTGGAAATGGAATTAGTATTTTACTATTTTTGTGTGGAGTTAATAACTAATCTTATTTTGGTTCATTTTTGTGTGTAGGAAGGTGAATTTTTCTCCAAGAATGGATTTCCAAAGTCACCATTCCCTAATGGTTGGAAAGGAACTGTTGGACTTTATGCTGTTGGGTTTACAAAGAGAGGGCTCTCTGGTTCTTCATATGATGCTAAACAAATTGCTCAAGATATTGCTCAAGTTTGGAAACAAGAGATTAAGCAAAAGAAACACTACACTAATGCTTGCAATAAACGTTGCATTTCCCAATTCTAA
Protein sequence

>MS.gene038029.t1

MENLIRLVDNEEEIVSHRCIWVNGPIIVGAGPSGLATAACLKQQGVPFMVLERSNCIASLWQKRTYDRLKLHLPKQFCQLPNFPFPQEFPEYPTKKQFINYLESYAKHFEINPRFNECVQSAKYDETNGLWRVETVSNGNEVEYICRSLVVATGENAECVVPDIEGLSKFKGEVIHACDYKSGEGFRGKKVLVVGCGNSGMELSLDLCNHNASPSIVLRSSVHVLPREVFGKSTFGLAVMMMKWLPGWIVDKILLILAWLVFGNIEKYGLKRPLEGPLELKNTKGKTPVLDIGTLEKIRSGHIKVVPGIKRFTNGCVELVNGEKSQVDAVVLATGYRSNVPSWLKEGEFFSKNGFPKSPFPNGWKGTVGLYAVGFTKRGLSGSSYDAKQIAQDIAQVWKQEIKQKKHYTNACNKRCISQF