Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31616.t1 | XP_003588544.1 | 97.9 | 431 | 8 | 1 | 1 | 431 | 1 | 430 | 7.00E-249 | 869.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31616.t1 | Q8VZ59 | 67.3 | 416 | 121 | 4 | 6 | 419 | 7 | 409 | 5.6e-162 | 572.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31616.t1 | G7I4C7 | 97.9 | 431 | 8 | 1 | 1 | 431 | 1 | 430 | 5.1e-249 | 869.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31616 | MS.gene038029 | PPI |
| MS.gene31616 | MS.gene061851 | PPI |
| MS.gene23537 | MS.gene31616 | PPI |
| MS.gene51580 | MS.gene31616 | PPI |
| MS.gene015953 | MS.gene31616 | PPI |
| MS.gene027681 | MS.gene31616 | PPI |
| MS.gene31616 | MS.gene054944 | PPI |
| MS.gene61665 | MS.gene31616 | PPI |
| MS.gene94810 | MS.gene31616 | PPI |
| MS.gene31616 | MS.gene013322 | PPI |
| MS.gene31616 | MS.gene60245 | PPI |
| MS.gene64265 | MS.gene31616 | PPI |
| MS.gene31616 | MS.gene064951 | PPI |
| MS.gene36879 | MS.gene31616 | PPI |
| MS.gene31616 | MS.gene018590 | PPI |
| MS.gene31616 | MS.gene44331 | PPI |
| MS.gene049295 | MS.gene31616 | PPI |
| MS.gene57685 | MS.gene31616 | PPI |
| MS.gene31616 | MS.gene09884 | PPI |
| MS.gene019484 | MS.gene31616 | PPI |
| MS.gene31616 | MS.gene86173 | PPI |
| MS.gene24021 | MS.gene31616 | PPI |
| MS.gene31616 | MS.gene06418 | PPI |
| MS.gene059027 | MS.gene31616 | PPI |
| MS.gene29205 | MS.gene31616 | PPI |
| MS.gene31616 | MS.gene44332 | PPI |
| MS.gene31616 | MS.gene53594 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31616.t1 | MTR_1g008380 | 97.912 | 431 | 8 | 1 | 1 | 431 | 1 | 430 | 0.0 | 865 |
| MS.gene31616.t1 | MTR_3g109520 | 75.765 | 425 | 98 | 2 | 1 | 424 | 1 | 421 | 0.0 | 664 |
| MS.gene31616.t1 | MTR_6g086870 | 66.093 | 407 | 131 | 4 | 22 | 423 | 1 | 405 | 0.0 | 561 |
| MS.gene31616.t1 | MTR_1g069275 | 61.353 | 414 | 157 | 3 | 19 | 431 | 1 | 412 | 0.0 | 521 |
| MS.gene31616.t1 | MTR_1g046230 | 60.051 | 393 | 153 | 2 | 35 | 424 | 16 | 407 | 1.84e-178 | 505 |
| MS.gene31616.t1 | MTR_1g011630 | 61.658 | 386 | 142 | 3 | 36 | 420 | 9 | 389 | 6.11e-176 | 498 |
| MS.gene31616.t1 | MTR_7g099330 | 58.396 | 399 | 159 | 3 | 34 | 431 | 15 | 407 | 1.98e-174 | 494 |
| MS.gene31616.t1 | MTR_7g099160 | 56.832 | 322 | 132 | 3 | 111 | 431 | 213 | 528 | 2.93e-128 | 381 |
| MS.gene31616.t1 | MTR_7g107690 | 45.040 | 373 | 198 | 3 | 44 | 414 | 9 | 376 | 4.25e-117 | 347 |
| MS.gene31616.t1 | MTR_7g107710 | 47.059 | 374 | 189 | 5 | 44 | 414 | 7 | 374 | 2.01e-114 | 340 |
| MS.gene31616.t1 | MTR_8g432640 | 43.467 | 375 | 205 | 3 | 44 | 416 | 7 | 376 | 4.73e-114 | 339 |
| MS.gene31616.t1 | MTR_5g033260 | 42.971 | 377 | 208 | 3 | 44 | 418 | 7 | 378 | 2.46e-112 | 335 |
| MS.gene31616.t1 | MTR_3g088925 | 42.967 | 391 | 213 | 5 | 44 | 431 | 8 | 391 | 1.29e-107 | 323 |
| MS.gene31616.t1 | MTR_3g088955 | 43.223 | 391 | 212 | 5 | 44 | 431 | 8 | 391 | 6.09e-107 | 322 |
| MS.gene31616.t1 | MTR_3g088945 | 43.316 | 374 | 205 | 3 | 44 | 415 | 8 | 376 | 1.10e-106 | 321 |
| MS.gene31616.t1 | MTR_4g051642 | 41.237 | 388 | 218 | 5 | 44 | 429 | 8 | 387 | 2.22e-102 | 310 |
| MS.gene31616.t1 | MTR_3g096030 | 35.227 | 176 | 89 | 2 | 44 | 218 | 7 | 158 | 2.05e-35 | 128 |
| MS.gene31616.t1 | MTR_3g437580 | 24.251 | 367 | 171 | 12 | 45 | 373 | 15 | 312 | 4.69e-14 | 73.6 |
| MS.gene31616.t1 | MTR_3g437580 | 24.251 | 367 | 171 | 12 | 45 | 373 | 15 | 312 | 1.27e-13 | 72.8 |
| MS.gene31616.t1 | MTR_8g037880 | 24.880 | 209 | 129 | 6 | 45 | 227 | 6 | 212 | 2.18e-13 | 72.0 |
| MS.gene31616.t1 | MTR_2g450310 | 25.403 | 248 | 142 | 11 | 45 | 252 | 7 | 251 | 8.70e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31616.t1 | AT5G25620 | 66.667 | 420 | 125 | 4 | 6 | 423 | 7 | 413 | 0.0 | 570 |
| MS.gene31616.t1 | AT5G25620 | 66.667 | 420 | 125 | 4 | 6 | 423 | 7 | 413 | 0.0 | 570 |
| MS.gene31616.t1 | AT4G13260 | 65.860 | 413 | 126 | 3 | 4 | 415 | 3 | 401 | 0.0 | 557 |
| MS.gene31616.t1 | AT1G04610 | 60.000 | 395 | 153 | 2 | 34 | 424 | 28 | 421 | 1.13e-178 | 506 |
| MS.gene31616.t1 | AT4G28720 | 56.867 | 415 | 174 | 3 | 19 | 429 | 1 | 414 | 4.05e-177 | 501 |
| MS.gene31616.t1 | AT1G04180 | 58.354 | 413 | 169 | 3 | 19 | 430 | 1 | 411 | 6.51e-175 | 496 |
| MS.gene31616.t1 | AT5G43890 | 58.191 | 409 | 167 | 3 | 19 | 424 | 1 | 408 | 1.03e-174 | 495 |
| MS.gene31616.t1 | AT2G33230 | 58.753 | 417 | 156 | 3 | 22 | 424 | 1 | 415 | 3.14e-173 | 492 |
| MS.gene31616.t1 | AT5G11320 | 58.793 | 381 | 151 | 2 | 38 | 418 | 12 | 386 | 2.94e-165 | 471 |
| MS.gene31616.t1 | AT4G32540 | 56.313 | 396 | 167 | 3 | 29 | 423 | 7 | 397 | 2.28e-162 | 464 |
| MS.gene31616.t1 | AT4G32540 | 56.281 | 398 | 166 | 4 | 29 | 423 | 7 | 399 | 8.03e-161 | 460 |
| MS.gene31616.t1 | AT4G13260 | 64.396 | 323 | 100 | 3 | 4 | 325 | 3 | 311 | 3.28e-147 | 421 |
| MS.gene31616.t1 | AT5G11320 | 58.716 | 327 | 130 | 1 | 38 | 364 | 12 | 333 | 1.32e-140 | 406 |
| MS.gene31616.t1 | AT4G13260 | 67.010 | 291 | 95 | 1 | 126 | 415 | 8 | 298 | 8.80e-138 | 397 |
| MS.gene31616.t1 | AT1G21430 | 48.267 | 375 | 184 | 5 | 44 | 415 | 10 | 377 | 1.24e-119 | 354 |
| MS.gene31616.t1 | AT1G48910 | 44.772 | 373 | 199 | 3 | 44 | 414 | 6 | 373 | 4.70e-116 | 345 |
| MS.gene31616.t1 | AT5G61290 | 27.679 | 224 | 115 | 7 | 45 | 228 | 18 | 234 | 8.76e-14 | 73.6 |
| MS.gene31616.t1 | AT5G07800 | 26.818 | 220 | 122 | 7 | 45 | 227 | 18 | 235 | 3.53e-13 | 71.6 |
| MS.gene31616.t1 | AT1G62560 | 22.511 | 231 | 141 | 5 | 45 | 246 | 15 | 236 | 5.93e-13 | 70.5 |
| MS.gene31616.t1 | AT1G62560 | 22.511 | 231 | 141 | 5 | 45 | 246 | 15 | 236 | 6.29e-13 | 70.9 |
| MS.gene31616.t1 | AT5G45180 | 24.148 | 352 | 200 | 14 | 45 | 355 | 15 | 340 | 9.66e-13 | 70.1 |
| MS.gene31616.t1 | AT1G65860 | 21.834 | 229 | 144 | 4 | 45 | 246 | 15 | 235 | 6.87e-12 | 67.4 |
| MS.gene31616.t1 | AT1G12200 | 24.900 | 249 | 141 | 9 | 59 | 270 | 30 | 269 | 9.69e-12 | 66.6 |
| MS.gene31616.t1 | AT1G12200 | 25.523 | 239 | 132 | 9 | 59 | 260 | 30 | 259 | 1.19e-11 | 66.6 |
Find 111 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAACAATTCATAGAGTATT+TGG | 0.149405 | 1.1:+11116786 | MS.gene31616:CDS |
| CTTCAAGTGATAGATGTTTA+TGG | 0.160401 | 1.1:+11116542 | MS.gene31616:CDS |
| AGTTTGTGAGCTTCCTTTAA+TGG | 0.176443 | 1.1:+11116729 | MS.gene31616:CDS |
| ATTGAAGGAGTTGATGAATT+TGG | 0.225886 | 1.1:+11116994 | MS.gene31616:CDS |
| ATGAATTTGGTGGTAGTATT+AGG | 0.259873 | 1.1:+11117007 | MS.gene31616:CDS |
| ATGCTGGGAAAATCAACTTT+TGG | 0.272060 | 1.1:+11119156 | MS.gene31616:CDS |
| GGAAGCTCACAAACTTGTTT+TGG | 0.287110 | 1.1:-11116721 | None:intergenic |
| GGTGAGGAGTGAGGGGAAGG+CGG | 0.303591 | 1.1:+11116897 | MS.gene31616:CDS |
| GTGGTTGGATGTGGAAATTC+AGG | 0.305649 | 1.1:+11117081 | MS.gene31616:CDS |
| TCTATGAATTGTTGCTTTGT+TGG | 0.308851 | 1.1:-11116778 | None:intergenic |
| CCACTAGGGAATTCCATTAA+AGG | 0.311291 | 1.1:-11116742 | None:intergenic |
| TTCAGGTATGGAAGTTTGTT+TGG | 0.318132 | 1.1:+11117098 | MS.gene31616:CDS |
| ATAACTTACCTTTAACCAAT+AGG | 0.321026 | 1.1:-11120346 | None:intergenic |
| CGGTTTGGTTCGGCCTCGGT+TGG | 0.332146 | 1.1:+11119275 | MS.gene31616:CDS |
| TAATGTACCCTATTGGTTAA+AGG | 0.336947 | 1.1:+11120338 | MS.gene31616:CDS |
| GTTTAGAGGGAAGAAAGTTT+TGG | 0.342078 | 1.1:+11117059 | MS.gene31616:CDS |
| GTGAGGAGTGAGGGGAAGGC+GGG | 0.346356 | 1.1:+11116898 | MS.gene31616:CDS |
| TTTCACCTTTCCATCCATTA+GGG | 0.348305 | 1.1:-11121086 | None:intergenic |
| AATGGATGGAAAGGTGAAAA+TGG | 0.349533 | 1.1:+11121090 | MS.gene31616:CDS |
| ATAGTAGGAGCAGGACCTTC+AGG | 0.355072 | 1.1:+11116580 | MS.gene31616:CDS |
| GATAGATGTTTATGGATTCC+AGG | 0.359227 | 1.1:+11116550 | MS.gene31616:CDS |
| TAACTTACCTTTAACCAATA+GGG | 0.359812 | 1.1:-11120345 | None:intergenic |
| GCAGCATATCTAAAACAAAA+AGG | 0.363705 | 1.1:+11116613 | MS.gene31616:CDS |
| TGTTGCTTTGTTGGATATGT+TGG | 0.373958 | 1.1:-11116769 | None:intergenic |
| CCATTAGGGAATGGCTTCCT+AGG | 0.378690 | 1.1:-11121072 | None:intergenic |
| GGTTCGGTTTGGTTCGGCCT+CGG | 0.399694 | 1.1:+11119271 | MS.gene31616:CDS |
| ACAAAAGTAATGTACCCTAT+TGG | 0.401012 | 1.1:+11120331 | MS.gene31616:CDS |
| GGATAAGGGTATGTTCTCTA+AGG | 0.417839 | 1.1:+11121038 | MS.gene31616:intron |
| CCTAGGAAGCCATTCCCTAA+TGG | 0.421132 | 1.1:+11121072 | MS.gene31616:CDS |
| TTCACTAAACGTGGACTACT+TGG | 0.424605 | 1.1:+11121129 | MS.gene31616:CDS |
| GAGGGTGAGGAGTGAGGGGA+AGG | 0.436723 | 1.1:+11116894 | MS.gene31616:CDS |
| GAATCTCTAACCACAATAGA+AGG | 0.439167 | 1.1:-11117144 | None:intergenic |
| CAATACAGAACGGTTCGGTT+TGG | 0.439433 | 1.1:+11119260 | MS.gene31616:CDS |
| GACGCCATCGTATTGGCAAC+CGG | 0.440593 | 1.1:+11120306 | MS.gene31616:CDS |
| TTCCCAGCATATCTCTTGGC+AGG | 0.440777 | 1.1:-11119143 | None:intergenic |
| CAAATTGTATAGCTTCACTA+TGG | 0.453940 | 1.1:+11116662 | MS.gene31616:CDS |
| CATCCTGCCAAGAGATATGC+TGG | 0.456200 | 1.1:+11119140 | MS.gene31616:CDS |
| GAGTGAGGGGAAGGCGGGAA+TGG | 0.461670 | 1.1:+11116903 | MS.gene31616:CDS |
| CGGTGGTTGATCGTTGCAAC+CGG | 0.474729 | 1.1:+11116943 | MS.gene31616:CDS |
| ATGGTATATGTGCAGGATAA+GGG | 0.476167 | 1.1:+11121024 | MS.gene31616:intron |
| CAGAACGGTTCGGTTTGGTT+CGG | 0.479807 | 1.1:+11119265 | MS.gene31616:CDS |
| GAATGCTGAGGCGGTTGTAC+CGG | 0.482930 | 1.1:+11116969 | MS.gene31616:CDS |
| GGTCCTGCTCCTACTATCAA+TGG | 0.486209 | 1.1:-11116574 | None:intergenic |
| AAAAGTGGTGAAGAGTTTAG+AGG | 0.487823 | 1.1:+11117045 | MS.gene31616:CDS |
| AAAATTTCGATATTAGGCCT+TGG | 0.488183 | 1.1:+11116821 | MS.gene31616:CDS |
| TGTCCATGTGGTTGCTAAAG+TGG | 0.490674 | 1.1:+11119181 | MS.gene31616:CDS |
| CTGAAGATATTGAACGGTGT+TGG | 0.492435 | 1.1:+11121178 | MS.gene31616:CDS |
| CTTGGCAATACAGAACGGTT+CGG | 0.494535 | 1.1:+11119255 | MS.gene31616:CDS |
| GAAAATGGCCTCTTTGCTGT+TGG | 0.494708 | 1.1:+11121105 | MS.gene31616:CDS |
| TGGTTACCGAGTTTGTTTGT+CGG | 0.495604 | 1.1:+11116923 | MS.gene31616:CDS |
| TGGCAAGGGCACCCACATCT+AGG | 0.496006 | 1.1:-11119338 | None:intergenic |
| AAAGTGGTGAAGAGTTTAGA+GGG | 0.496476 | 1.1:+11117046 | MS.gene31616:CDS |
| AAAGTGGTTACCCGTGCAAC+TGG | 0.496540 | 1.1:+11119197 | MS.gene31616:CDS |
| CCTTTCCATCCATTAGGGAA+TGG | 0.499153 | 1.1:-11121081 | None:intergenic |
| GATCTTTCTAGTATTAAACT+TGG | 0.510703 | 1.1:-11116640 | None:intergenic |
| GGTTTGGTTCGGCCTCGGTT+GGG | 0.511085 | 1.1:+11119276 | MS.gene31616:CDS |
| TCATCAACTCCTTCAATCTC+CGG | 0.512367 | 1.1:-11116988 | None:intergenic |
| AGTTATCTAAGAGAATTAGA+AGG | 0.522034 | 1.1:+11116454 | MS.gene31616:CDS |
| GCTGAGTTTGATGCTACACT+TGG | 0.526718 | 1.1:+11116865 | MS.gene31616:CDS |
| TTTGGAGGGTGAGGAGTGAG+GGG | 0.529144 | 1.1:+11116890 | MS.gene31616:CDS |
| GGTATGTTCTCTAAGGAAGA+TGG | 0.529812 | 1.1:+11121045 | MS.gene31616:CDS |
| ATTCCAGGTCCATTGATAGT+AGG | 0.534394 | 1.1:+11116565 | MS.gene31616:CDS |
| AACCGCCTCAGCATTCTCTC+CGG | 0.535999 | 1.1:-11116962 | None:intergenic |
| CATACTAGTTTGTATAAAAG+TGG | 0.538558 | 1.1:+11117030 | MS.gene31616:CDS |
| ATGTAATCCACCAGTTGCAC+GGG | 0.546866 | 1.1:-11119207 | None:intergenic |
| TGATGCTGCTCCTTCTATTG+TGG | 0.549061 | 1.1:+11117134 | MS.gene31616:CDS |
| TGGACTACTTGGTGCATCCA+TGG | 0.549422 | 1.1:+11121140 | MS.gene31616:CDS |
| ACATCCTTCTCACTGTGTCA+TGG | 0.550548 | 1.1:+11119226 | MS.gene31616:CDS |
| TCCCTCGTTCAGGTACGTCC+AGG | 0.553289 | 1.1:+11120225 | MS.gene31616:intron |
| GGATATGTTGGAAAACCACT+AGG | 0.555382 | 1.1:-11116757 | None:intergenic |
| GATTAAAAGAGGAGACATCA+AGG | 0.563954 | 1.1:+11119362 | MS.gene31616:CDS |
| CCATTCCCTAATGGATGGAA+AGG | 0.565023 | 1.1:+11121081 | MS.gene31616:CDS |
| GCCCTTGCCAAGATTAAAAG+AGG | 0.565947 | 1.1:+11119351 | MS.gene31616:CDS |
| CCTTTAATGGAATTCCCTAG+TGG | 0.567347 | 1.1:+11116742 | MS.gene31616:CDS |
| GCGGTTGTACCGGAGATTGA+AGG | 0.568267 | 1.1:+11116979 | MS.gene31616:CDS |
| CAGGCATCAAGAGGTTAAAA+CGG | 0.572356 | 1.1:+11120244 | MS.gene31616:CDS |
| GGAAGCCATTCCCTAATGGA+TGG | 0.574345 | 1.1:+11121076 | MS.gene31616:CDS |
| GCTGTTGGTTTCACTAAACG+TGG | 0.576427 | 1.1:+11121120 | MS.gene31616:CDS |
| GAAGGAGTTGATGAATTTGG+TGG | 0.576519 | 1.1:+11116997 | MS.gene31616:CDS |
| AAAGACACCGGTCCTAGATG+TGG | 0.578940 | 1.1:+11119326 | MS.gene31616:CDS |
| GGTCCATTGATAGTAGGAGC+AGG | 0.584095 | 1.1:+11116571 | MS.gene31616:CDS |
| GATGTAATCCACCAGTTGCA+CGG | 0.587259 | 1.1:-11119208 | None:intergenic |
| GCTGCTACTGCTAGTCCTGA+AGG | 0.587967 | 1.1:-11116595 | None:intergenic |
| GTGGTTACCCGTGCAACTGG+TGG | 0.590830 | 1.1:+11119200 | MS.gene31616:CDS |
| AGGGCACCCACATCTAGGAC+CGG | 0.591712 | 1.1:-11119333 | None:intergenic |
| TACAGAGTGGAATTTGCTGA+TGG | 0.592027 | 1.1:+11120267 | MS.gene31616:CDS |
| CTAAGGAAGATGGATACCCT+AGG | 0.600641 | 1.1:+11121055 | MS.gene31616:CDS |
| CATTAGGGAATGGCTTCCTA+GGG | 0.603860 | 1.1:-11121071 | None:intergenic |
| TGAACGGTGTTGGAAAGTTG+AGG | 0.604949 | 1.1:+11121188 | MS.gene31616:CDS |
| GCTCCTACTATCAATGGACC+TGG | 0.607612 | 1.1:-11116568 | None:intergenic |
| TGGATGTGGAAATTCAGGTA+TGG | 0.622494 | 1.1:+11117086 | MS.gene31616:CDS |
| ACTGTGTCATGGTTAATGCT+TGG | 0.622906 | 1.1:+11119237 | MS.gene31616:CDS |
| AGGTACGTCCAGGCATCAAG+AGG | 0.629400 | 1.1:+11120235 | MS.gene31616:intron |
| TAATGCTTGGCAATACAGAA+CGG | 0.631117 | 1.1:+11119250 | MS.gene31616:CDS |
| TAGTGAAACCAACAGCAAAG+AGG | 0.634282 | 1.1:-11121113 | None:intergenic |
| AAGACACCGGTCCTAGATGT+GGG | 0.638855 | 1.1:+11119327 | MS.gene31616:CDS |
| ATGAAGACGAAGACGATCGT+AGG | 0.641325 | 1.1:-11116695 | None:intergenic |
| TTACCGAGTTTGTTTGTCGG+TGG | 0.653194 | 1.1:+11116926 | MS.gene31616:CDS |
| TTAACCATGACACAGTGAGA+AGG | 0.654806 | 1.1:-11119230 | None:intergenic |
| GAGGTTAAAACGGTACAGAG+TGG | 0.654866 | 1.1:+11120254 | MS.gene31616:CDS |
| CAACCACCGACAAACAAACT+CGG | 0.654999 | 1.1:-11116929 | None:intergenic |
| ATATAGCTGAAGATATTGAA+CGG | 0.658373 | 1.1:+11121172 | MS.gene31616:CDS |
| GATATGTTGGAAAACCACTA+GGG | 0.658620 | 1.1:-11116756 | None:intergenic |
| AACCGGAGAGAATGCTGAGG+CGG | 0.661182 | 1.1:+11116960 | MS.gene31616:CDS |
| TAACCACTTTAGCAACCACA+TGG | 0.668567 | 1.1:-11119184 | None:intergenic |
| GTAACCGGTTGCCAATACGA+TGG | 0.675538 | 1.1:-11120310 | None:intergenic |
| AAAACTGTCTGGAAAGACAC+CGG | 0.678715 | 1.1:+11119314 | MS.gene31616:CDS |
| AGTTCTAGAGGACCCAACCG+AGG | 0.681521 | 1.1:-11119288 | None:intergenic |
| ATCCTGCCAAGAGATATGCT+GGG | 0.697559 | 1.1:+11119141 | MS.gene31616:CDS |
| ATAACTGTCTCATTGAACCA+AGG | 0.702457 | 1.1:-11116838 | None:intergenic |
| TGCAACCGGAGAGAATGCTG+AGG | 0.712718 | 1.1:+11116957 | MS.gene31616:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAGAGAAAA+AGG | - | chr1.1:11118001-11118020 | None:intergenic | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr1.1:11118981-11119000 | None:intergenic | 10.0% |
| !! | ACATTATAAAATATTTACAT+TGG | + | chr1.1:11118587-11118606 | MS.gene31616:intron | 10.0% |
| !! | GCAAAAAAAAAAAAATTATA+CGG | + | chr1.1:11120598-11120617 | MS.gene31616:intron | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr1.1:11118982-11119001 | None:intergenic | 10.0% |
| !!! | AGATATTTTTAATAAATTGA+CGG | + | chr1.1:11119925-11119944 | MS.gene31616:intron | 10.0% |
| !! | AAAATTCTAAACAATGAAAA+CGG | + | chr1.1:11120395-11120414 | MS.gene31616:intron | 15.0% |
| !! | AATAATACAAATAACTGAAA+TGG | + | chr1.1:11121005-11121024 | MS.gene31616:intron | 15.0% |
| !! | AATCAAATCATACTTTATTA+AGG | + | chr1.1:11119605-11119624 | MS.gene31616:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr1.1:11118980-11118999 | None:intergenic | 15.0% |
| !! | TCTAATATAGCATATAAAAT+AGG | + | chr1.1:11117655-11117674 | MS.gene31616:intron | 15.0% |
| !!! | AATGAAAATATGTTTTTACT+TGG | + | chr1.1:11120632-11120651 | MS.gene31616:intron | 15.0% |
| !!! | ATCATTTTTTCTATGAATAA+AGG | - | chr1.1:11116496-11116515 | None:intergenic | 15.0% |
| !!! | ATTCAAAAATACTTTTGAAA+TGG | - | chr1.1:11117738-11117757 | None:intergenic | 15.0% |
| !!! | GTAACTAATTTTTTTTAAGA+AGG | - | chr1.1:11117560-11117579 | None:intergenic | 15.0% |
| !!! | TGCTATTTTTCATATTATTA+AGG | - | chr1.1:11118142-11118161 | None:intergenic | 15.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr1.1:11118957-11118976 | None:intergenic | 20.0% |
| !! | AATTTCCATGTTTCTTAATT+AGG | - | chr1.1:11117528-11117547 | None:intergenic | 20.0% |
| !! | AGAAAGAAAAACAAAGTAAA+AGG | - | chr1.1:11117193-11117212 | None:intergenic | 20.0% |
| !! | ATAGTAGTTAAATCTTTAGT+AGG | + | chr1.1:11119996-11120015 | MS.gene31616:intron | 20.0% |
| !! | ATCAAAAATCTTAAGATCTT+AGG | - | chr1.1:11118660-11118679 | None:intergenic | 20.0% |
| !! | ATTCCAAAAATTTCGATATT+AGG | + | chr1.1:11116815-11116834 | MS.gene31616:CDS | 20.0% |
| !! | CACAATCAAACAATTATTAT+AGG | + | chr1.1:11119864-11119883 | MS.gene31616:intron | 20.0% |
| !! | GAAAAATAGCACTTAAATTA+TGG | + | chr1.1:11118151-11118170 | MS.gene31616:intron | 20.0% |
| !! | GTTGAAAATCTTTATGATAA+AGG | + | chr1.1:11118449-11118468 | MS.gene31616:intron | 20.0% |
| !! | TATTTCGAATAAGGAAAATA+CGG | + | chr1.1:11120895-11120914 | MS.gene31616:intron | 20.0% |
| !!! | AAGCTTTTTTATTTCGAATA+AGG | + | chr1.1:11120886-11120905 | MS.gene31616:intron | 20.0% |
| !!! | AGTATGTTTTGAATAAAAAC+AGG | - | chr1.1:11117432-11117451 | None:intergenic | 20.0% |
| !!! | ATATTGAATTTTATGCTACA+AGG | - | chr1.1:11117490-11117509 | None:intergenic | 20.0% |
| !!! | ATCTAACACTTAAAGATTTT+GGG | + | chr1.1:11118295-11118314 | MS.gene31616:intron | 20.0% |
| !!! | ATTTTCAAAATTCAGATAGA+TGG | - | chr1.1:11120961-11120980 | None:intergenic | 20.0% |
| !!! | ATTTTTAAAGAGTGCATAAT+GGG | - | chr1.1:11120375-11120394 | None:intergenic | 20.0% |
| !!! | CATGATATTTCACTTTTTTT+GGG | + | chr1.1:11117792-11117811 | MS.gene31616:intron | 20.0% |
| !!! | GAGTACTTTTTTATAGAAAA+AGG | + | chr1.1:11119047-11119066 | MS.gene31616:intron | 20.0% |
| !!! | GTATGTTTTGAATAAAAACA+GGG | - | chr1.1:11117431-11117450 | None:intergenic | 20.0% |
| !!! | TATCTAACACTTAAAGATTT+TGG | + | chr1.1:11118294-11118313 | MS.gene31616:intron | 20.0% |
| !!! | TATTTTGAGACACTTTTTTT+TGG | - | chr1.1:11118855-11118874 | None:intergenic | 20.0% |
| !!! | TATTTTTAAAGAGTGCATAA+TGG | - | chr1.1:11120376-11120395 | None:intergenic | 20.0% |
| !!! | TTCGACATTAGTTTTAAATA+AGG | + | chr1.1:11119822-11119841 | MS.gene31616:intron | 20.0% |
| ! | AAAACAAAACACAACTTTGA+AGG | - | chr1.1:11117634-11117653 | None:intergenic | 25.0% |
| ! | AAAGTGACACTAAAATCTTA+AGG | - | chr1.1:11119423-11119442 | None:intergenic | 25.0% |
| ! | AAATAGCACTTAAATTATGG+CGG | + | chr1.1:11118154-11118173 | MS.gene31616:intron | 25.0% |
| ! | AGTTATCTAAGAGAATTAGA+AGG | + | chr1.1:11116454-11116473 | MS.gene31616:CDS | 25.0% |
| ! | ATAACTTACCTTTAACCAAT+AGG | - | chr1.1:11120349-11120368 | None:intergenic | 25.0% |
| ! | ATATAGCTGAAGATATTGAA+CGG | + | chr1.1:11121172-11121191 | MS.gene31616:CDS | 25.0% |
| ! | ATCTTTCAAACAAGAAAGAA+AGG | - | chr1.1:11119561-11119580 | None:intergenic | 25.0% |
| ! | CTCTACTTGTAATAATACAA+GGG | - | chr1.1:11117918-11117937 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr1.1:11118958-11118977 | None:intergenic | 25.0% |
| ! | GTATTCATAATTTCATGTAG+TGG | + | chr1.1:11117682-11117701 | MS.gene31616:intron | 25.0% |
| ! | TAACTTACCTTTAACCAATA+GGG | - | chr1.1:11120348-11120367 | None:intergenic | 25.0% |
| ! | TAAGAAACATGGAAATTTGT+CGG | + | chr1.1:11117531-11117550 | MS.gene31616:intron | 25.0% |
| ! | TATCTCCTAATTAAGAAACA+TGG | + | chr1.1:11117520-11117539 | MS.gene31616:intron | 25.0% |
| ! | TGAATTTACTTCAATATGTG+TGG | - | chr1.1:11119768-11119787 | None:intergenic | 25.0% |
| !! | AAAGATTTTCCATGATCATT+AGG | + | chr1.1:11119575-11119594 | MS.gene31616:intron | 25.0% |
| !! | CATACTAGTTTGTATAAAAG+TGG | + | chr1.1:11117030-11117049 | MS.gene31616:CDS | 25.0% |
| !! | CGAAAACTTTGAAAAAAGAT+TGG | + | chr1.1:11120793-11120812 | MS.gene31616:intron | 25.0% |
| !! | GATCTTTCTAGTATTAAACT+TGG | - | chr1.1:11116643-11116662 | None:intergenic | 25.0% |
| !! | GTCCAAATAAACTTATTTCT+GGG | - | chr1.1:11119473-11119492 | None:intergenic | 25.0% |
| !! | TCATAAAGATTTTCAACACA+AGG | - | chr1.1:11118446-11118465 | None:intergenic | 25.0% |
| !!! | ATGCTGATTTTCATAATCAT+AGG | - | chr1.1:11117353-11117372 | None:intergenic | 25.0% |
| !!! | CGACATAAAATGTTTTAACA+AGG | + | chr1.1:11119798-11119817 | MS.gene31616:intron | 25.0% |
| !!! | CTTTTTTAACTTTTCCGTTT+CGG | + | chr1.1:11117215-11117234 | MS.gene31616:intron | 25.0% |
| !!! | GCATGATATTTCACTTTTTT+TGG | + | chr1.1:11117791-11117810 | MS.gene31616:intron | 25.0% |
| !!! | GTTTTTTCCTTTCACTTTTT+TGG | + | chr1.1:11118025-11118044 | MS.gene31616:intron | 25.0% |
| !!! | TATTTCCCTATTAGTCTTAA+TGG | + | chr1.1:11119742-11119761 | MS.gene31616:intron | 25.0% |
| !!! | TCCAAATAAACTTATTTCTG+GGG | - | chr1.1:11119472-11119491 | None:intergenic | 25.0% |
| AAAAAGGTAAGAGCTTATGT+GGG | - | chr1.1:11117985-11118004 | None:intergenic | 30.0% | |
| AAAATTTCGATATTAGGCCT+TGG | + | chr1.1:11116821-11116840 | MS.gene31616:CDS | 30.0% | |
| AAGAAACATGGAAATTTGTC+GGG | + | chr1.1:11117532-11117551 | MS.gene31616:intron | 30.0% | |
| AATAGTAGTATCAGAGCATA+TGG | + | chr1.1:11118397-11118416 | MS.gene31616:intron | 30.0% | |
| ACAAAAGTAATGTACCCTAT+TGG | + | chr1.1:11120331-11120350 | MS.gene31616:CDS | 30.0% | |
| ACCCCAGAAATAAGTTTATT+TGG | + | chr1.1:11119468-11119487 | MS.gene31616:intron | 30.0% | |
| ATCCGTGTGAAAAATCAAAT+TGG | + | chr1.1:11119002-11119021 | MS.gene31616:intron | 30.0% | |
| CAAAATTCAGATAGATGGAT+AGG | - | chr1.1:11120956-11120975 | None:intergenic | 30.0% | |
| CAAATTGTATAGCTTCACTA+TGG | + | chr1.1:11116662-11116681 | MS.gene31616:CDS | 30.0% | |
| CGTCCAAATAAACTTATTTC+TGG | - | chr1.1:11119474-11119493 | None:intergenic | 30.0% | |
| CTAGACTTAAAACTTAGTTG+TGG | - | chr1.1:11118096-11118115 | None:intergenic | 30.0% | |
| CTTCAAGTGATAGATGTTTA+TGG | + | chr1.1:11116542-11116561 | MS.gene31616:CDS | 30.0% | |
| GCTCTACTTGTAATAATACA+AGG | - | chr1.1:11117919-11117938 | None:intergenic | 30.0% | |
| GTATTATTACAAGTAGAGCA+TGG | + | chr1.1:11117920-11117939 | MS.gene31616:intron | 30.0% | |
| TCCGTGTGAAAAATCAAATT+GGG | + | chr1.1:11119003-11119022 | MS.gene31616:intron | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr1.1:11118973-11118992 | None:intergenic | 30.0% | |
| ! | AGGCCTAATATCGAAATTTT+TGG | - | chr1.1:11116821-11116840 | None:intergenic | 30.0% |
| ! | ATGAATTTGGTGGTAGTATT+AGG | + | chr1.1:11117007-11117026 | MS.gene31616:CDS | 30.0% |
| ! | CTTTTGCAAAGAAACATCAT+GGG | - | chr1.1:11117884-11117903 | None:intergenic | 30.0% |
| ! | GCAACAATTCATAGAGTATT+TGG | + | chr1.1:11116786-11116805 | MS.gene31616:CDS | 30.0% |
| ! | GCAGCATATCTAAAACAAAA+AGG | + | chr1.1:11116613-11116632 | MS.gene31616:CDS | 30.0% |
| ! | TAATGTACCCTATTGGTTAA+AGG | + | chr1.1:11120338-11120357 | MS.gene31616:CDS | 30.0% |
| ! | TCTTTTGCAAAGAAACATCA+TGG | - | chr1.1:11117885-11117904 | None:intergenic | 30.0% |
| !! | AAAGATTTTGGGTGAAGATA+TGG | + | chr1.1:11118306-11118325 | MS.gene31616:intron | 30.0% |
| !! | ACCCAATTTGATTTTTCACA+CGG | - | chr1.1:11119007-11119026 | None:intergenic | 30.0% |
| !! | ATTGAAGGAGTTGATGAATT+TGG | + | chr1.1:11116994-11117013 | MS.gene31616:CDS | 30.0% |
| !! | TCTATGAATTGTTGCTTTGT+TGG | - | chr1.1:11116781-11116800 | None:intergenic | 30.0% |
| !! | TGTTTTGAATAAAAACAGGG+AGG | - | chr1.1:11117428-11117447 | None:intergenic | 30.0% |
| !! | TTCTCTATTGGTTTGATTGA+AGG | + | chr1.1:11119113-11119132 | MS.gene31616:intron | 30.0% |
| !!! | AGCTATATTTTTTGCATCCA+TGG | - | chr1.1:11121160-11121179 | None:intergenic | 30.0% |
| !!! | CTAAGTTTTAAGTCTAGTCA+TGG | + | chr1.1:11118099-11118118 | MS.gene31616:intron | 30.0% |
| !!! | TGATGGTACTTTTTCTCTAT+TGG | + | chr1.1:11119101-11119120 | MS.gene31616:intron | 30.0% |
| AAAAGTGGTGAAGAGTTTAG+AGG | + | chr1.1:11117045-11117064 | MS.gene31616:CDS | 35.0% | |
| AAACATCATGGGAAGGAAAA+AGG | - | chr1.1:11117873-11117892 | None:intergenic | 35.0% | |
| AAAGTGGTGAAGAGTTTAGA+GGG | + | chr1.1:11117046-11117065 | MS.gene31616:CDS | 35.0% | |
| AACTGAAATGGTATATGTGC+AGG | + | chr1.1:11121017-11121036 | MS.gene31616:intron | 35.0% | |
| AATGGATGGAAAGGTGAAAA+TGG | + | chr1.1:11121090-11121109 | MS.gene31616:CDS | 35.0% | |
| AATGGTATATGTGCAGGATA+AGG | + | chr1.1:11121023-11121042 | MS.gene31616:intron | 35.0% | |
| AGTTTGTGAGCTTCCTTTAA+TGG | + | chr1.1:11116729-11116748 | MS.gene31616:CDS | 35.0% | |
| ATAACTGTCTCATTGAACCA+AGG | - | chr1.1:11116841-11116860 | None:intergenic | 35.0% | |
| ATCCTATGTCCTCATTGTTA+CGG | - | chr1.1:11119890-11119909 | None:intergenic | 35.0% | |
| ATGGTATATGTGCAGGATAA+GGG | + | chr1.1:11121024-11121043 | MS.gene31616:intron | 35.0% | |
| ATTGTGCAAATTCATGTGTG+TGG | + | chr1.1:11118686-11118705 | MS.gene31616:intron | 35.0% | |
| CAAATTGGGTCAGATATTCT+GGG | + | chr1.1:11119017-11119036 | MS.gene31616:intron | 35.0% | |
| CCAAACACCAAAAAAGTGAA+AGG | - | chr1.1:11118035-11118054 | None:intergenic | 35.0% | |
| CTAGAACTCAAAAAACTGTC+TGG | + | chr1.1:11119303-11119322 | MS.gene31616:CDS | 35.0% | |
| GAAAAAGGTAAGAGCTTATG+TGG | - | chr1.1:11117986-11118005 | None:intergenic | 35.0% | |
| GAATCTCTAACCACAATAGA+AGG | - | chr1.1:11117147-11117166 | None:intergenic | 35.0% | |
| GAATGAAGCTGTTATGTGAT+GGG | + | chr1.1:11118054-11118073 | MS.gene31616:intron | 35.0% | |
| GATAGATGTTTATGGATTCC+AGG | + | chr1.1:11116550-11116569 | MS.gene31616:CDS | 35.0% | |
| GATATGTTGGAAAACCACTA+GGG | - | chr1.1:11116759-11116778 | None:intergenic | 35.0% | |
| GATTAAAAGAGGAGACATCA+AGG | + | chr1.1:11119362-11119381 | MS.gene31616:CDS | 35.0% | |
| GCAAGAAAACAATCTCATGA+TGG | + | chr1.1:11119084-11119103 | MS.gene31616:intron | 35.0% | |
| GGTAAATGAGTCAGATATTC+CGG | - | chr1.1:11118834-11118853 | None:intergenic | 35.0% | |
| GGTATACACTTGAGTTCAAT+CGG | + | chr1.1:11120479-11120498 | MS.gene31616:intron | 35.0% | |
| GTAAATGAGTCAGATATTCC+GGG | - | chr1.1:11118833-11118852 | None:intergenic | 35.0% | |
| TAATGCTTGGCAATACAGAA+CGG | + | chr1.1:11119250-11119269 | MS.gene31616:CDS | 35.0% | |
| TAATTTCATGTAGTGGCTAC+AGG | + | chr1.1:11117689-11117708 | MS.gene31616:intron | 35.0% | |
| TACTACTATTGAGTCATGAG+AGG | - | chr1.1:11118387-11118406 | None:intergenic | 35.0% | |
| TAGTATCAGAGCATATGGTT+TGG | + | chr1.1:11118402-11118421 | MS.gene31616:intron | 35.0% | |
| TATTATAGGCCGTAACAATG+AGG | + | chr1.1:11119878-11119897 | MS.gene31616:intron | 35.0% | |
| TCAAATTGGGTCAGATATTC+TGG | + | chr1.1:11119016-11119035 | MS.gene31616:intron | 35.0% | |
| TCATGATGCGATTGTGATTA+AGG | - | chr1.1:11118186-11118205 | None:intergenic | 35.0% | |
| TGTGGCCATTAAGACTAATA+GGG | - | chr1.1:11119750-11119769 | None:intergenic | 35.0% | |
| TTTAAGTCTAGTCATGGTTG+AGG | + | chr1.1:11118105-11118124 | MS.gene31616:intron | 35.0% | |
| TTTCACCTTTCCATCCATTA+GGG | - | chr1.1:11121089-11121108 | None:intergenic | 35.0% | |
| ! | AGATTTTCAACACAAGGAGA+AGG | - | chr1.1:11118440-11118459 | None:intergenic | 35.0% |
| ! | ATGCTGGGAAAATCAACTTT+TGG | + | chr1.1:11119156-11119175 | MS.gene31616:CDS | 35.0% |
| ! | ATGTTACTACAACTGACTCA+AGG | - | chr1.1:11118762-11118781 | None:intergenic | 35.0% |
| ! | GATGTCTCCTCTTTTAATCT+TGG | - | chr1.1:11119361-11119380 | None:intergenic | 35.0% |
| ! | GATTTTCAACACAAGGAGAA+GGG | - | chr1.1:11118439-11118458 | None:intergenic | 35.0% |
| ! | GTTTAGAGGGAAGAAAGTTT+TGG | + | chr1.1:11117059-11117078 | MS.gene31616:CDS | 35.0% |
| ! | TAACTTTTCCGTTTCGGAAA+TGG | + | chr1.1:11117221-11117240 | MS.gene31616:intron | 35.0% |
| ! | TCCTCTTTTAATCTTGGCAA+GGG | - | chr1.1:11119355-11119374 | None:intergenic | 35.0% |
| ! | TGCTGGGAAAATCAACTTTT+GGG | + | chr1.1:11119157-11119176 | MS.gene31616:CDS | 35.0% |
| ! | TTCAGGTATGGAAGTTTGTT+TGG | + | chr1.1:11117098-11117117 | MS.gene31616:CDS | 35.0% |
| ! | TTTTCACCTTTCCATCCATT+AGG | - | chr1.1:11121090-11121109 | None:intergenic | 35.0% |
| !! | GGGTACATTACTTTTGTAAC+CGG | - | chr1.1:11120328-11120347 | None:intergenic | 35.0% |
| !! | TGTTGCTTTGTTGGATATGT+TGG | - | chr1.1:11116772-11116791 | None:intergenic | 35.0% |
| !! | TTGAAAGCACCTAATGATCA+TGG | - | chr1.1:11119587-11119606 | None:intergenic | 35.0% |
| !! | TTGATGCTACACTTGGTTTT+TGG | + | chr1.1:11116872-11116891 | MS.gene31616:CDS | 35.0% |
| !!! | CCTTTCACTTTTTTGGTGTT+TGG | + | chr1.1:11118032-11118051 | MS.gene31616:intron | 35.0% |
| !!! | GACAGTTTTTTGAGTTCTAG+AGG | - | chr1.1:11119303-11119322 | None:intergenic | 35.0% |
| AAAACTGTCTGGAAAGACAC+CGG | + | chr1.1:11119314-11119333 | MS.gene31616:CDS | 40.0% | |
| AACGCAATTAAGGCCTATCA+AGG | + | chr1.1:11117948-11117967 | MS.gene31616:intron | 40.0% | |
| ACGCAATTAAGGCCTATCAA+GGG | + | chr1.1:11117949-11117968 | MS.gene31616:intron | 40.0% | |
| ACTGTGTCATGGTTAATGCT+TGG | + | chr1.1:11119237-11119256 | MS.gene31616:CDS | 40.0% | |
| ATCATGGGAAGGAAAAAGGA+GGG | - | chr1.1:11117869-11117888 | None:intergenic | 40.0% | |
| CAGGCATCAAGAGGTTAAAA+CGG | + | chr1.1:11120244-11120263 | MS.gene31616:CDS | 40.0% | |
| CCACTAGGGAATTCCATTAA+AGG | - | chr1.1:11116745-11116764 | None:intergenic | 40.0% | |
| CCTTTAATGGAATTCCCTAG+TGG | + | chr1.1:11116742-11116761 | MS.gene31616:CDS | 40.0% | |
| CTGAAGATATTGAACGGTGT+TGG | + | chr1.1:11121178-11121197 | MS.gene31616:CDS | 40.0% | |
| GCACTAACGACATGTGAAAA+AGG | + | chr1.1:11120458-11120477 | MS.gene31616:intron | 40.0% | |
| GGAATGAAGCTGTTATGTGA+TGG | + | chr1.1:11118053-11118072 | MS.gene31616:intron | 40.0% | |
| GGATATGTTGGAAAACCACT+AGG | - | chr1.1:11116760-11116779 | None:intergenic | 40.0% | |
| GTGTGGCCATTAAGACTAAT+AGG | - | chr1.1:11119751-11119770 | None:intergenic | 40.0% | |
| GTTGCGAGAATCGTTAGATT+TGG | + | chr1.1:11117264-11117283 | MS.gene31616:intron | 40.0% | |
| TAACCACTTTAGCAACCACA+TGG | - | chr1.1:11119187-11119206 | None:intergenic | 40.0% | |
| TAGTGAAACCAACAGCAAAG+AGG | - | chr1.1:11121116-11121135 | None:intergenic | 40.0% | |
| TCATCAACTCCTTCAATCTC+CGG | - | chr1.1:11116991-11117010 | None:intergenic | 40.0% | |
| TGCAAAGAAACATCATGGGA+AGG | - | chr1.1:11117880-11117899 | None:intergenic | 40.0% | |
| TGGATAGGCTCATAGAAGAT+AGG | - | chr1.1:11120941-11120960 | None:intergenic | 40.0% | |
| TGGATGTGGAAATTCAGGTA+TGG | + | chr1.1:11117086-11117105 | MS.gene31616:CDS | 40.0% | |
| TGTTGACATTGTGTCAACAG+TGG | + | chr1.1:11118489-11118508 | MS.gene31616:intron | 40.0% | |
| TTAACCATGACACAGTGAGA+AGG | - | chr1.1:11119233-11119252 | None:intergenic | 40.0% | |
| TTGATAGGCCTTAATTGCGT+TGG | - | chr1.1:11117949-11117968 | None:intergenic | 40.0% | |
| ! | AGAGCATATGGTTTGGCTAA+AGG | + | chr1.1:11118409-11118428 | MS.gene31616:intron | 40.0% |
| ! | ATTCCAGGTCCATTGATAGT+AGG | + | chr1.1:11116565-11116584 | MS.gene31616:CDS | 40.0% |
| ! | CTCCTCTTTTAATCTTGGCA+AGG | - | chr1.1:11119356-11119375 | None:intergenic | 40.0% |
| ! | GATTTTCCCAGCATATCTCT+TGG | - | chr1.1:11119150-11119169 | None:intergenic | 40.0% |
| ! | GGATAAGGGTATGTTCTCTA+AGG | + | chr1.1:11121038-11121057 | MS.gene31616:intron | 40.0% |
| ! | GGTATGTTCTCTAAGGAAGA+TGG | + | chr1.1:11121045-11121064 | MS.gene31616:CDS | 40.0% |
| ! | TGGTTACCGAGTTTGTTTGT+CGG | + | chr1.1:11116923-11116942 | MS.gene31616:CDS | 40.0% |
| ! | TTCACTAAACGTGGACTACT+TGG | + | chr1.1:11121129-11121148 | MS.gene31616:CDS | 40.0% |
| !! | AAAGTTTTGGTGGTTGGATG+TGG | + | chr1.1:11117072-11117091 | MS.gene31616:CDS | 40.0% |
| !! | ATGCTACACTTGGTTTTTGG+AGG | + | chr1.1:11116875-11116894 | MS.gene31616:CDS | 40.0% |
| !! | GAAGGAGTTGATGAATTTGG+TGG | + | chr1.1:11116997-11117016 | MS.gene31616:CDS | 40.0% |
| !! | GAATTTTGACGCCATCGTAT+TGG | + | chr1.1:11120299-11120318 | MS.gene31616:CDS | 40.0% |
| !! | GGAAGCTCACAAACTTGTTT+TGG | - | chr1.1:11116724-11116743 | None:intergenic | 40.0% |
| !! | TACAGAGTGGAATTTGCTGA+TGG | + | chr1.1:11120267-11120286 | MS.gene31616:CDS | 40.0% |
| !! | TAGAGGGAAGAAAGTTTTGG+TGG | + | chr1.1:11117062-11117081 | MS.gene31616:CDS | 40.0% |
| !! | TGCTACACTTGGTTTTTGGA+GGG | + | chr1.1:11116876-11116895 | MS.gene31616:CDS | 40.0% |
| AAGGAGGGGAAAAAAGCAAC+TGG | - | chr1.1:11117854-11117873 | None:intergenic | 45.0% | |
| AAGGTAAGAGCTTATGTGGG+AGG | - | chr1.1:11117982-11118001 | None:intergenic | 45.0% | |
| AATCGCATCATGATCGTCGT+TGG | + | chr1.1:11118193-11118212 | MS.gene31616:intron | 45.0% | |
| ACATCCTTCTCACTGTGTCA+TGG | + | chr1.1:11119226-11119245 | MS.gene31616:CDS | 45.0% | |
| ACTTAGTTGTGGAGATGCTG+TGG | - | chr1.1:11118085-11118104 | None:intergenic | 45.0% | |
| AGGAGGGGAAAAAAGCAACT+GGG | - | chr1.1:11117853-11117872 | None:intergenic | 45.0% | |
| ATAGGCCTTAATTGCGTTGG+TGG | - | chr1.1:11117946-11117965 | None:intergenic | 45.0% | |
| ATCCTGCCAAGAGATATGCT+GGG | + | chr1.1:11119141-11119160 | MS.gene31616:CDS | 45.0% | |
| ATGAAGACGAAGACGATCGT+AGG | - | chr1.1:11116698-11116717 | None:intergenic | 45.0% | |
| ATGAGTCAGATATTCCGGGA+CGG | - | chr1.1:11118829-11118848 | None:intergenic | 45.0% | |
| ATGTAATCCACCAGTTGCAC+GGG | - | chr1.1:11119210-11119229 | None:intergenic | 45.0% | |
| ATTCTCAAGCATGCCTAGCA+TGG | + | chr1.1:11117815-11117834 | MS.gene31616:intron | 45.0% | |
| CAACCACCGACAAACAAACT+CGG | - | chr1.1:11116932-11116951 | None:intergenic | 45.0% | |
| CATCATGGGAAGGAAAAAGG+AGG | - | chr1.1:11117870-11117889 | None:intergenic | 45.0% | |
| CATTAGGGAATGGCTTCCTA+GGG | - | chr1.1:11121074-11121093 | None:intergenic | 45.0% | |
| CCTTTCCATCCATTAGGGAA+TGG | - | chr1.1:11121084-11121103 | None:intergenic | 45.0% | |
| CTAAGGAAGATGGATACCCT+AGG | + | chr1.1:11121055-11121074 | MS.gene31616:CDS | 45.0% | |
| CTTGGCAATACAGAACGGTT+CGG | + | chr1.1:11119255-11119274 | MS.gene31616:CDS | 45.0% | |
| GAGGTTAAAACGGTACAGAG+TGG | + | chr1.1:11120254-11120273 | MS.gene31616:CDS | 45.0% | |
| GATGTAATCCACCAGTTGCA+CGG | - | chr1.1:11119211-11119230 | None:intergenic | 45.0% | |
| GCCCTTGCCAAGATTAAAAG+AGG | + | chr1.1:11119351-11119370 | MS.gene31616:CDS | 45.0% | |
| GCTGAGTTTGATGCTACACT+TGG | + | chr1.1:11116865-11116884 | MS.gene31616:CDS | 45.0% | |
| GTCATCTTCTATCCCATGCT+AGG | - | chr1.1:11117831-11117850 | None:intergenic | 45.0% | |
| GTGGTTGGATGTGGAAATTC+AGG | + | chr1.1:11117081-11117100 | MS.gene31616:CDS | 45.0% | |
| TCATGGGAAGGAAAAAGGAG+GGG | - | chr1.1:11117868-11117887 | None:intergenic | 45.0% | |
| TGATGCTGCTCCTTCTATTG+TGG | + | chr1.1:11117134-11117153 | MS.gene31616:CDS | 45.0% | |
| TGTCCATGTGGTTGCTAAAG+TGG | + | chr1.1:11119181-11119200 | MS.gene31616:CDS | 45.0% | |
| TTCTCAAGCATGCCTAGCAT+GGG | + | chr1.1:11117816-11117835 | MS.gene31616:intron | 45.0% | |
| ! | AACAGTGGTGCTAACGACAT+AGG | + | chr1.1:11118504-11118523 | MS.gene31616:intron | 45.0% |
| ! | ACGGAGGGAGTATATAGTAG+AGG | - | chr1.1:11118810-11118829 | None:intergenic | 45.0% |
| ! | CCATTCCCTAATGGATGGAA+AGG | + | chr1.1:11121081-11121100 | MS.gene31616:CDS | 45.0% |
| ! | GAAAATGGCCTCTTTGCTGT+TGG | + | chr1.1:11121105-11121124 | MS.gene31616:CDS | 45.0% |
| ! | GAGGGAGTATATAGTAGAGG+AGG | - | chr1.1:11118807-11118826 | None:intergenic | 45.0% |
| ! | GCATATGGTTTGGCTAAAGG+TGG | + | chr1.1:11118412-11118431 | MS.gene31616:intron | 45.0% |
| ! | TGAACGGTGTTGGAAAGTTG+AGG | + | chr1.1:11121188-11121207 | MS.gene31616:CDS | 45.0% |
| ! | TTACCGAGTTTGTTTGTCGG+TGG | + | chr1.1:11116926-11116945 | MS.gene31616:CDS | 45.0% |
| ! | TTGGGTCAGATATTCTGGGA+CGG | + | chr1.1:11119021-11119040 | MS.gene31616:intron | 45.0% |
| !! | CAATACAGAACGGTTCGGTT+TGG | + | chr1.1:11119260-11119279 | MS.gene31616:CDS | 45.0% |
| !! | CATCGGTTCCATTTCCGAAA+CGG | - | chr1.1:11117232-11117251 | None:intergenic | 45.0% |
| !! | CGTTTTAACCTCTTGATGCC+TGG | - | chr1.1:11120246-11120265 | None:intergenic | 45.0% |
| !! | GCTGTTGGTTTCACTAAACG+TGG | + | chr1.1:11121120-11121139 | MS.gene31616:CDS | 45.0% |
| !! | GGGAAGAAAGTTTTGGTGGT+TGG | + | chr1.1:11117066-11117085 | MS.gene31616:CDS | 45.0% |
| !!! | CAACTTTTGGGTTGTCCATG+TGG | + | chr1.1:11119169-11119188 | MS.gene31616:CDS | 45.0% |
| AAAGACACCGGTCCTAGATG+TGG | + | chr1.1:11119326-11119345 | MS.gene31616:CDS | 50.0% | |
| AAAGTGGTTACCCGTGCAAC+TGG | + | chr1.1:11119197-11119216 | MS.gene31616:CDS | 50.0% | |
| AAGACACCGGTCCTAGATGT+GGG | + | chr1.1:11119327-11119346 | MS.gene31616:CDS | 50.0% | |
| ACTATATACTCCCTCCGTCC+CGG | + | chr1.1:11118812-11118831 | MS.gene31616:intron | 50.0% | |
| ATAGTAGGAGCAGGACCTTC+AGG | + | chr1.1:11116580-11116599 | MS.gene31616:CDS | 50.0% | |
| CATCCTGCCAAGAGATATGC+TGG | + | chr1.1:11119140-11119159 | MS.gene31616:CDS | 50.0% | |
| CATGGCCACCAACGCAATTA+AGG | + | chr1.1:11117938-11117957 | MS.gene31616:intron | 50.0% | |
| CCATTAGGGAATGGCTTCCT+AGG | - | chr1.1:11121075-11121094 | None:intergenic | 50.0% | |
| CCTAGGAAGCCATTCCCTAA+TGG | + | chr1.1:11121072-11121091 | MS.gene31616:CDS | 50.0% | |
| GCAACTGCTGCATTGTGCAT+CGG | - | chr1.1:11117249-11117268 | None:intergenic | 50.0% | |
| GCTCCTACTATCAATGGACC+TGG | - | chr1.1:11116571-11116590 | None:intergenic | 50.0% | |
| GGAAGCCATTCCCTAATGGA+TGG | + | chr1.1:11121076-11121095 | MS.gene31616:CDS | 50.0% | |
| GGCCGTAACAATGAGGACAT+AGG | + | chr1.1:11119885-11119904 | MS.gene31616:intron | 50.0% | |
| GGTCCTGCTCCTACTATCAA+TGG | - | chr1.1:11116577-11116596 | None:intergenic | 50.0% | |
| GTAACCGGTTGCCAATACGA+TGG | - | chr1.1:11120313-11120332 | None:intergenic | 50.0% | |
| TTCCCAGCATATCTCTTGGC+AGG | - | chr1.1:11119146-11119165 | None:intergenic | 50.0% | |
| ! | AGTGGTGCTAACGACATAGG+TGG | + | chr1.1:11118507-11118526 | MS.gene31616:intron | 50.0% |
| ! | GAGCTTATGTGGGAGGCTTT+TGG | - | chr1.1:11117975-11117994 | None:intergenic | 50.0% |
| ! | GGTCCATTGATAGTAGGAGC+AGG | + | chr1.1:11116571-11116590 | MS.gene31616:CDS | 50.0% |
| ! | GTGGTGCTAACGACATAGGT+GGG | + | chr1.1:11118508-11118527 | MS.gene31616:intron | 50.0% |
| ! | TGGTGCTAACGACATAGGTG+GGG | + | chr1.1:11118509-11118528 | MS.gene31616:intron | 50.0% |
| !! | CACTTGGTTTTTGGAGGGTG+AGG | + | chr1.1:11116881-11116900 | MS.gene31616:CDS | 50.0% |
| !! | CAGAACGGTTCGGTTTGGTT+CGG | + | chr1.1:11119265-11119284 | MS.gene31616:CDS | 50.0% |
| !! | GTCAGATATTCTGGGACGGA+GGG | + | chr1.1:11119025-11119044 | MS.gene31616:intron | 50.0% |
| !! | TGGACTACTTGGTGCATCCA+TGG | + | chr1.1:11121140-11121159 | MS.gene31616:CDS | 50.0% |
| !! | TTTTGGAGGGTGAGGAGTGA+GGG | + | chr1.1:11116889-11116908 | MS.gene31616:CDS | 50.0% |
| !! | TTTTTGGAGGGTGAGGAGTG+AGG | + | chr1.1:11116888-11116907 | MS.gene31616:CDS | 50.0% |
| AACCGCCTCAGCATTCTCTC+CGG | - | chr1.1:11116965-11116984 | None:intergenic | 55.0% | |
| AACCGGAGAGAATGCTGAGG+CGG | + | chr1.1:11116960-11116979 | MS.gene31616:CDS | 55.0% | |
| AGGTACGTCCAGGCATCAAG+AGG | + | chr1.1:11120235-11120254 | MS.gene31616:intron | 55.0% | |
| AGTCAGATATTCCGGGACGG+AGG | - | chr1.1:11118826-11118845 | None:intergenic | 55.0% | |
| CGCATCATGATCGTCGTTGG+TGG | + | chr1.1:11118196-11118215 | MS.gene31616:intron | 55.0% | |
| CGGTGGTTGATCGTTGCAAC+CGG | + | chr1.1:11116943-11116962 | MS.gene31616:CDS | 55.0% | |
| GAATGCTGAGGCGGTTGTAC+CGG | + | chr1.1:11116969-11116988 | MS.gene31616:CDS | 55.0% | |
| GCGGTTGTACCGGAGATTGA+AGG | + | chr1.1:11116979-11116998 | MS.gene31616:CDS | 55.0% | |
| GCTGCTACTGCTAGTCCTGA+AGG | - | chr1.1:11116598-11116617 | None:intergenic | 55.0% | |
| GGTGCTAACGACATAGGTGG+GGG | + | chr1.1:11118510-11118529 | MS.gene31616:intron | 55.0% | |
| GTACCTGAACGAGGGAGCTA+TGG | - | chr1.1:11120221-11120240 | None:intergenic | 55.0% | |
| GTCAGATATTCCGGGACGGA+GGG | - | chr1.1:11118825-11118844 | None:intergenic | 55.0% | |
| TCTCCATAGCTCCCTCGTTC+AGG | + | chr1.1:11120215-11120234 | MS.gene31616:intron | 55.0% | |
| TGCAACCGGAGAGAATGCTG+AGG | + | chr1.1:11116957-11116976 | MS.gene31616:CDS | 55.0% | |
| TTTGGAGGGTGAGGAGTGAG+GGG | + | chr1.1:11116890-11116909 | MS.gene31616:CDS | 55.0% | |
| ! | GACGCCATCGTATTGGCAAC+CGG | + | chr1.1:11120306-11120325 | MS.gene31616:CDS | 55.0% |
| ! | GGAGGCTTTTGGCCCTTGAT+AGG | - | chr1.1:11117964-11117983 | None:intergenic | 55.0% |
| !! | AGTTCTAGAGGACCCAACCG+AGG | - | chr1.1:11119291-11119310 | None:intergenic | 55.0% |
| !! | GGTCAGATATTCTGGGACGG+AGG | + | chr1.1:11119024-11119043 | MS.gene31616:intron | 55.0% |
| GCCTGGACGTACCTGAACGA+GGG | - | chr1.1:11120229-11120248 | None:intergenic | 60.0% | |
| GTGGTTACCCGTGCAACTGG+TGG | + | chr1.1:11119200-11119219 | MS.gene31616:CDS | 60.0% | |
| TCCCTCGTTCAGGTACGTCC+AGG | + | chr1.1:11120225-11120244 | MS.gene31616:intron | 60.0% | |
| TGCCTGGACGTACCTGAACG+AGG | - | chr1.1:11120230-11120249 | None:intergenic | 60.0% | |
| ! | AGGGCACCCACATCTAGGAC+CGG | - | chr1.1:11119336-11119355 | None:intergenic | 60.0% |
| ! | CGTTTTCCGCAGCTGCTGCA+GGG | + | chr1.1:11117317-11117336 | MS.gene31616:intron | 60.0% |
| ! | TCGTTTTCCGCAGCTGCTGC+AGG | + | chr1.1:11117316-11117335 | MS.gene31616:intron | 60.0% |
| !! | GGTTCGGTTTGGTTCGGCCT+CGG | + | chr1.1:11119271-11119290 | MS.gene31616:CDS | 60.0% |
| !! | GGTTTGGTTCGGCCTCGGTT+GGG | + | chr1.1:11119276-11119295 | MS.gene31616:CDS | 60.0% |
| !! | TGGCAAGGGCACCCACATCT+AGG | - | chr1.1:11119341-11119360 | None:intergenic | 60.0% |
| CTACAGCCCTGCAGCAGCTG+CGG | - | chr1.1:11117326-11117345 | None:intergenic | 65.0% | |
| GAGGGTGAGGAGTGAGGGGA+AGG | + | chr1.1:11116894-11116913 | MS.gene31616:CDS | 65.0% | |
| GAGTGAGGGGAAGGCGGGAA+TGG | + | chr1.1:11116903-11116922 | MS.gene31616:CDS | 65.0% | |
| GGTGAGGAGTGAGGGGAAGG+CGG | + | chr1.1:11116897-11116916 | MS.gene31616:CDS | 65.0% | |
| GTGAGGAGTGAGGGGAAGGC+GGG | + | chr1.1:11116898-11116917 | MS.gene31616:CDS | 65.0% | |
| !! | CGGTTTGGTTCGGCCTCGGT+TGG | + | chr1.1:11119275-11119294 | MS.gene31616:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 11116448 | 11121242 | 11116448 | ID=MS.gene31616 |
| chr1.1 | mRNA | 11116448 | 11121242 | 11116448 | ID=MS.gene31616.t1;Parent=MS.gene31616 |
| chr1.1 | exon | 11116448 | 11117167 | 11116448 | ID=MS.gene31616.t1.exon1;Parent=MS.gene31616.t1 |
| chr1.1 | CDS | 11116448 | 11117167 | 11116448 | ID=cds.MS.gene31616.t1;Parent=MS.gene31616.t1 |
| chr1.1 | exon | 11119135 | 11119383 | 11119135 | ID=MS.gene31616.t1.exon2;Parent=MS.gene31616.t1 |
| chr1.1 | CDS | 11119135 | 11119383 | 11119135 | ID=cds.MS.gene31616.t1;Parent=MS.gene31616.t1 |
| chr1.1 | exon | 11120237 | 11120359 | 11120237 | ID=MS.gene31616.t1.exon3;Parent=MS.gene31616.t1 |
| chr1.1 | CDS | 11120237 | 11120359 | 11120237 | ID=cds.MS.gene31616.t1;Parent=MS.gene31616.t1 |
| chr1.1 | exon | 11121039 | 11121242 | 11121039 | ID=MS.gene31616.t1.exon4;Parent=MS.gene31616.t1 |
| chr1.1 | CDS | 11121039 | 11121242 | 11121039 | ID=cds.MS.gene31616.t1;Parent=MS.gene31616.t1 |
| Gene Sequence |
| Protein sequence |
