Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23537.t1 | XP_003625456.1 | 98.8 | 416 | 5 | 0 | 1 | 416 | 1 | 416 | 1.20E-242 | 848.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23537.t1 | Q9SVU0 | 75.1 | 425 | 95 | 4 | 1 | 415 | 1 | 424 | 1.0e-189 | 664.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23537.t1 | G7KZI9 | 98.8 | 416 | 5 | 0 | 1 | 416 | 1 | 416 | 8.9e-243 | 848.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052211 | MS.gene23537 | 0.810473 | 1.13E-50 | -1.69E-46 |
| MS.gene052606 | MS.gene23537 | 0.81692 | 4.31E-52 | -1.69E-46 |
| MS.gene057768 | MS.gene23537 | 0.800927 | 1.15E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23537 | MS.gene31616 | PPI |
| MS.gene23537 | MS.gene29205 | PPI |
| MS.gene23537 | MS.gene049295 | PPI |
| MS.gene23537 | MS.gene054944 | PPI |
| MS.gene23537 | MS.gene013322 | PPI |
| MS.gene23537 | MS.gene60245 | PPI |
| MS.gene23537 | MS.gene57685 | PPI |
| MS.gene031178 | MS.gene23537 | PPI |
| MS.gene23537 | MS.gene015953 | PPI |
| MS.gene23537 | MS.gene64265 | PPI |
| MS.gene23537 | MS.gene56048 | PPI |
| MS.gene23537 | MS.gene064951 | PPI |
| MS.gene23537 | MS.gene44331 | PPI |
| MS.gene23537 | MS.gene035805 | PPI |
| MS.gene23537 | MS.gene059136 | PPI |
| MS.gene23537 | MS.gene36879 | PPI |
| MS.gene23537 | MS.gene019484 | PPI |
| MS.gene23537 | MS.gene027681 | PPI |
| MS.gene23537 | MS.gene064542 | PPI |
| MS.gene51580 | MS.gene23537 | PPI |
| MS.gene23537 | MS.gene86173 | PPI |
| MS.gene23537 | MS.gene32792 | PPI |
| MS.gene23537 | MS.gene73119 | PPI |
| MS.gene23537 | MS.gene61665 | PPI |
| MS.gene23537 | MS.gene40340 | PPI |
| MS.gene23537 | MS.gene06418 | PPI |
| MS.gene23537 | MS.gene021474 | PPI |
| MS.gene23537 | MS.gene44332 | PPI |
| MS.gene23537 | MS.gene53594 | PPI |
| MS.gene23537 | MS.gene014685 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23537.t1 | MTR_7g099330 | 98.798 | 416 | 5 | 0 | 1 | 416 | 1 | 416 | 0.0 | 852 |
| MS.gene23537.t1 | MTR_1g069275 | 78.436 | 422 | 84 | 4 | 1 | 416 | 1 | 421 | 0.0 | 687 |
| MS.gene23537.t1 | MTR_7g099160 | 97.231 | 325 | 9 | 0 | 92 | 416 | 213 | 537 | 0.0 | 657 |
| MS.gene23537.t1 | MTR_1g046230 | 72.642 | 424 | 107 | 2 | 1 | 416 | 1 | 423 | 0.0 | 637 |
| MS.gene23537.t1 | MTR_1g011630 | 58.268 | 381 | 156 | 2 | 17 | 395 | 9 | 388 | 5.10e-176 | 497 |
| MS.gene23537.t1 | MTR_1g008380 | 58.974 | 390 | 153 | 3 | 17 | 400 | 35 | 423 | 1.23e-173 | 492 |
| MS.gene23537.t1 | MTR_3g109520 | 59.536 | 388 | 149 | 3 | 19 | 399 | 34 | 420 | 9.19e-171 | 484 |
| MS.gene23537.t1 | MTR_6g086870 | 56.391 | 399 | 160 | 5 | 9 | 395 | 4 | 400 | 1.72e-167 | 476 |
| MS.gene23537.t1 | MTR_7g107710 | 45.953 | 383 | 195 | 4 | 25 | 400 | 7 | 384 | 7.49e-120 | 353 |
| MS.gene23537.t1 | MTR_7g107690 | 42.480 | 379 | 206 | 4 | 25 | 396 | 9 | 382 | 3.64e-114 | 339 |
| MS.gene23537.t1 | MTR_5g033260 | 45.093 | 377 | 195 | 4 | 25 | 394 | 7 | 378 | 1.07e-113 | 338 |
| MS.gene23537.t1 | MTR_8g432640 | 45.067 | 375 | 194 | 3 | 25 | 392 | 7 | 376 | 1.92e-112 | 335 |
| MS.gene23537.t1 | MTR_3g088955 | 43.850 | 374 | 196 | 4 | 25 | 390 | 8 | 375 | 2.88e-112 | 335 |
| MS.gene23537.t1 | MTR_3g088925 | 43.432 | 373 | 199 | 3 | 25 | 390 | 8 | 375 | 1.33e-111 | 333 |
| MS.gene23537.t1 | MTR_3g088945 | 43.164 | 373 | 200 | 3 | 25 | 390 | 8 | 375 | 5.72e-111 | 331 |
| MS.gene23537.t1 | MTR_4g051642 | 43.968 | 373 | 196 | 5 | 25 | 390 | 8 | 374 | 9.23e-109 | 326 |
| MS.gene23537.t1 | MTR_3g096030 | 38.068 | 176 | 79 | 2 | 25 | 194 | 7 | 158 | 6.27e-36 | 129 |
| MS.gene23537.t1 | MTR_3g437580 | 23.140 | 242 | 139 | 6 | 26 | 228 | 15 | 248 | 2.06e-11 | 65.5 |
| MS.gene23537.t1 | MTR_3g437580 | 23.140 | 242 | 139 | 6 | 26 | 228 | 15 | 248 | 3.28e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23537.t1 | AT4G28720 | 75.059 | 425 | 95 | 4 | 1 | 415 | 1 | 424 | 0.0 | 672 |
| MS.gene23537.t1 | AT5G43890 | 72.813 | 423 | 105 | 4 | 1 | 414 | 1 | 422 | 0.0 | 644 |
| MS.gene23537.t1 | AT1G04180 | 72.381 | 420 | 109 | 4 | 1 | 414 | 1 | 419 | 0.0 | 637 |
| MS.gene23537.t1 | AT1G04610 | 68.019 | 419 | 124 | 2 | 7 | 416 | 20 | 437 | 0.0 | 603 |
| MS.gene23537.t1 | AT2G33230 | 66.667 | 423 | 130 | 3 | 3 | 416 | 11 | 431 | 0.0 | 569 |
| MS.gene23537.t1 | AT5G25620 | 60.199 | 402 | 151 | 5 | 9 | 402 | 16 | 416 | 5.40e-178 | 503 |
| MS.gene23537.t1 | AT5G25620 | 60.150 | 399 | 150 | 5 | 9 | 399 | 16 | 413 | 6.02e-177 | 501 |
| MS.gene23537.t1 | AT5G11320 | 58.438 | 397 | 159 | 2 | 19 | 415 | 12 | 402 | 4.79e-173 | 490 |
| MS.gene23537.t1 | AT4G32540 | 56.589 | 387 | 165 | 3 | 15 | 399 | 12 | 397 | 1.32e-167 | 476 |
| MS.gene23537.t1 | AT4G32540 | 56.041 | 389 | 166 | 4 | 15 | 399 | 12 | 399 | 7.44e-166 | 472 |
| MS.gene23537.t1 | AT4G13260 | 57.218 | 381 | 155 | 3 | 17 | 390 | 21 | 400 | 3.43e-162 | 462 |
| MS.gene23537.t1 | AT5G11320 | 59.752 | 323 | 129 | 1 | 19 | 341 | 12 | 333 | 1.62e-144 | 416 |
| MS.gene23537.t1 | AT4G13260 | 56.897 | 290 | 119 | 1 | 17 | 300 | 21 | 310 | 4.34e-125 | 364 |
| MS.gene23537.t1 | AT1G48910 | 45.308 | 373 | 192 | 4 | 25 | 390 | 6 | 373 | 3.92e-119 | 352 |
| MS.gene23537.t1 | AT1G21430 | 47.467 | 375 | 180 | 7 | 25 | 390 | 10 | 376 | 4.73e-117 | 347 |
| MS.gene23537.t1 | AT4G13260 | 56.207 | 290 | 119 | 3 | 108 | 390 | 9 | 297 | 4.00e-110 | 326 |
| MS.gene23537.t1 | AT1G65860 | 26.201 | 229 | 129 | 7 | 26 | 222 | 15 | 235 | 5.85e-15 | 77.0 |
| MS.gene23537.t1 | AT5G07800 | 25.346 | 217 | 122 | 5 | 26 | 202 | 18 | 234 | 8.77e-13 | 70.1 |
| MS.gene23537.t1 | AT5G45180 | 25.501 | 349 | 197 | 12 | 25 | 332 | 14 | 340 | 5.87e-12 | 67.8 |
Find 93 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAAAGTCCTTCAATTTC+AGG | 0.167964 | 7.4:-11206262 | None:intergenic |
| TTCTCTCACGCCGTTGCATT+TGG | 0.196198 | 7.4:+11205831 | MS.gene23537:CDS |
| GTTAAAATTGCACAAGATAT+TGG | 0.210104 | 7.4:+11207349 | MS.gene23537:CDS |
| TGTTTCTTTGAAGGGTATTC+AGG | 0.234534 | 7.4:-11206058 | None:intergenic |
| CCATGTGGAAATGGCATCTT+TGG | 0.241543 | 7.4:-11207253 | None:intergenic |
| TTCACAAAGAGAGGGCTTTC+TGG | 0.253444 | 7.4:+11207310 | MS.gene23537:CDS |
| CAATGTCCCTTCTTGGCTTC+AGG | 0.262510 | 7.4:+11206906 | MS.gene23537:CDS |
| CACAAGATATTGGAAAAGTT+TGG | 0.264533 | 7.4:+11207359 | MS.gene23537:CDS |
| GTTGTTGGATGTGGAAATTC+TGG | 0.276886 | 7.4:+11206355 | MS.gene23537:CDS |
| ACCGCAGCAATGTCCCTTCT+TGG | 0.278978 | 7.4:+11206899 | MS.gene23537:CDS |
| GTGCTACCTAGAGAAATATT+TGG | 0.304479 | 7.4:+11206559 | MS.gene23537:CDS |
| GGTAGTTGACAGAATTGTTT+TGG | 0.312145 | 7.4:-11206010 | None:intergenic |
| TCTCTCACGCCGTTGCATTT+GGG | 0.312281 | 7.4:+11205832 | MS.gene23537:CDS |
| AGAAGGAAAGACACCGGTTT+TGG | 0.315038 | 7.4:+11206738 | MS.gene23537:CDS |
| GGTGAAGTTGAGCTTGTTAA+TGG | 0.336155 | 7.4:+11206835 | MS.gene23537:CDS |
| CGCCGTTGCATTTGGGTCAA+TGG | 0.349348 | 7.4:+11205839 | MS.gene23537:CDS |
| CCCTTCCAACCATGTGGAAA+TGG | 0.354454 | 7.4:-11207262 | None:intergenic |
| GAACACACTCGTTGAATTGC+GGG | 0.355699 | 7.4:-11206126 | None:intergenic |
| CATGGTTGGAAGGGAAATTC+AGG | 0.364067 | 7.4:+11207271 | MS.gene23537:CDS |
| TATGCTTGTGATTACAAGTC+AGG | 0.381966 | 7.4:+11206304 | MS.gene23537:CDS |
| GGAAAGAAAGTTCTTGTTGT+TGG | 0.397099 | 7.4:+11206340 | MS.gene23537:CDS |
| GGGTATTCAGGGAAATCTTC+AGG | 0.406351 | 7.4:-11206046 | None:intergenic |
| CTTATGAATTGTTTCTTTGA+AGG | 0.406911 | 7.4:-11206067 | None:intergenic |
| TCTTCAGGCATTGGAAGGTT+AGG | 0.415876 | 7.4:-11206031 | None:intergenic |
| TCATCATGCTTTACCTTCCA+TGG | 0.420618 | 7.4:+11206405 | MS.gene23537:CDS |
| TGGTATCAAAAGGCCTTCAA+TGG | 0.420704 | 7.4:+11206693 | MS.gene23537:CDS |
| AAAGTTCTTGTTGTTGGATG+TGG | 0.420882 | 7.4:+11206346 | MS.gene23537:CDS |
| ATCATAGGTGCAGGTCCATC+TGG | 0.430455 | 7.4:+11205869 | MS.gene23537:CDS |
| AGGGACATTGCTGCGGTAAC+CGG | 0.431024 | 7.4:-11206893 | None:intergenic |
| ATCAAAAGGTTTAATAATCA+TGG | 0.435107 | 7.4:+11206814 | MS.gene23537:CDS |
| TTCCATGGTTGTTCGTAGCT+CGG | 0.440887 | 7.4:+11206420 | MS.gene23537:CDS |
| ATGAAGTTGAGTACATTTGT+AGG | 0.449172 | 7.4:+11206197 | MS.gene23537:CDS |
| AACTTCAAAGGACCCATTGA+AGG | 0.449923 | 7.4:-11206706 | None:intergenic |
| TTATGAATTGTTTCTTTGAA+GGG | 0.463097 | 7.4:-11206066 | None:intergenic |
| CTGATTGCATAGCATCACTA+TGG | 0.465618 | 7.4:+11205951 | MS.gene23537:CDS |
| GTTTCTTTGAAGGGTATTCA+GGG | 0.466361 | 7.4:-11206057 | None:intergenic |
| TCAGGGAAATCTTCAGGCAT+TGG | 0.472081 | 7.4:-11206040 | None:intergenic |
| TGTTGAAGTGGTTACCACTT+TGG | 0.479523 | 7.4:+11206611 | MS.gene23537:CDS |
| GATATTCCAAATATTTCTCT+AGG | 0.498261 | 7.4:-11206565 | None:intergenic |
| TCTGTGTTCTTCAACTTCAA+AGG | 0.498901 | 7.4:-11206718 | None:intergenic |
| AGGTGGCTTGTTGTTGCTAC+CGG | 0.499132 | 7.4:+11206217 | MS.gene23537:CDS |
| GAAGGACTTTCTGAATTCAA+AGG | 0.499261 | 7.4:+11206271 | MS.gene23537:CDS |
| GCCATTTCCACATGGTTGGA+AGG | 0.503171 | 7.4:+11207261 | MS.gene23537:CDS |
| AGATGCCATTTCCACATGGT+TGG | 0.512278 | 7.4:+11207257 | MS.gene23537:CDS |
| GATGCAGTTGTTCTTGCTAC+CGG | 0.513400 | 7.4:+11206874 | MS.gene23537:CDS |
| AAAGCACCAATGTCCAAAAC+CGG | 0.515634 | 7.4:-11206751 | None:intergenic |
| GTCAATGGACCTGTGATCAT+AGG | 0.520464 | 7.4:+11205854 | MS.gene23537:CDS |
| CTTAACCCTCCACAATCCAC+TGG | 0.522153 | 7.4:-11206170 | None:intergenic |
| CATGTGGAAATGGCATCTTT+GGG | 0.531409 | 7.4:-11207252 | None:intergenic |
| AATTCAGGACTATATGCTGT+AGG | 0.534469 | 7.4:+11207286 | MS.gene23537:CDS |
| ATGCTTGTGATTACAAGTCA+GGG | 0.545079 | 7.4:+11206305 | MS.gene23537:CDS |
| TGTGTTACTCCTGAAATTGA+AGG | 0.546438 | 7.4:+11206253 | MS.gene23537:CDS |
| GGTATCAAAAGGCCTTCAAT+GGG | 0.549973 | 7.4:+11206694 | MS.gene23537:CDS |
| AGGTACAACATTTATGTCAC+CGG | 0.553155 | 7.4:-11206788 | None:intergenic |
| CCATTTCCACATGGTTGGAA+GGG | 0.558378 | 7.4:+11207262 | MS.gene23537:CDS |
| ATATTCACCTGAAGCCAAGA+AGG | 0.558667 | 7.4:-11206913 | None:intergenic |
| TGAACACACTCGTTGAATTG+CGG | 0.561991 | 7.4:-11206127 | None:intergenic |
| GGAAATCTTCAGGCATTGGA+AGG | 0.566772 | 7.4:-11206036 | None:intergenic |
| ATGTTGTACCTGGAATCAAA+AGG | 0.567602 | 7.4:+11206800 | MS.gene23537:CDS |
| GGACCTGTGATCATAGGTGC+AGG | 0.569251 | 7.4:+11205860 | MS.gene23537:CDS |
| TAGCGGTTATGATGTTGAAG+TGG | 0.573120 | 7.4:+11206599 | MS.gene23537:CDS |
| GCTTTGGAGAAAATTAGATC+CGG | 0.578995 | 7.4:+11206769 | MS.gene23537:CDS |
| GCTGTAGGGTTCACAAAGAG+AGG | 0.580060 | 7.4:+11207301 | MS.gene23537:CDS |
| GCTGCCGTTGCAAGACCAGA+TGG | 0.585259 | 7.4:-11205884 | None:intergenic |
| GTGAAGTTTCAATCTGTCGT+AGG | 0.589564 | 7.4:-11205984 | None:intergenic |
| ATTCAGGACTATATGCTGTA+GGG | 0.590290 | 7.4:+11207287 | MS.gene23537:CDS |
| TTGAAGTTGAAGAACACAGA+AGG | 0.590910 | 7.4:+11206721 | MS.gene23537:CDS |
| CCAAAGATGCCATTTCCACA+TGG | 0.597297 | 7.4:+11207253 | MS.gene23537:CDS |
| GCAGCATGTCTTAGAGAACA+AGG | 0.601445 | 7.4:+11205902 | MS.gene23537:CDS |
| TGGATGTGGAAATTCTGGAA+TGG | 0.605555 | 7.4:+11206360 | MS.gene23537:CDS |
| AAGTTGAGTACATTTGTAGG+TGG | 0.605781 | 7.4:+11206200 | MS.gene23537:CDS |
| GGTGACATAAATGTTGTACC+TGG | 0.608839 | 7.4:+11206790 | MS.gene23537:CDS |
| TATTCACCTGAAGCCAAGAA+GGG | 0.613263 | 7.4:-11206912 | None:intergenic |
| CTGTAGGGTTCACAAAGAGA+GGG | 0.613353 | 7.4:+11207302 | MS.gene23537:CDS |
| ATGATGAAACCAGTGGATTG+TGG | 0.614186 | 7.4:+11206161 | MS.gene23537:CDS |
| GGACCTGCACCTATGATCAC+AGG | 0.615165 | 7.4:-11205863 | None:intergenic |
| GTCCATTGACCCAAATGCAA+CGG | 0.615198 | 7.4:-11205841 | None:intergenic |
| GTGGTTACCACTTTGGATTG+TGG | 0.615333 | 7.4:+11206618 | MS.gene23537:CDS |
| AGCTCTTTCGAGAACAACGA+AGG | 0.625793 | 7.4:-11205930 | None:intergenic |
| AGGTCCATCTGGTCTTGCAA+CGG | 0.627266 | 7.4:+11205880 | MS.gene23537:CDS |
| GAATTTCCCTTCCAACCATG+TGG | 0.635313 | 7.4:-11207268 | None:intergenic |
| GAGCTACGAACAACCATGGA+AGG | 0.637115 | 7.4:-11206418 | None:intergenic |
| AGCTTGTCCACAATCCAAAG+TGG | 0.643807 | 7.4:-11206625 | None:intergenic |
| TACCGAGCTACGAACAACCA+TGG | 0.644442 | 7.4:-11206422 | None:intergenic |
| CAGCATGTCTTAGAGAACAA+GGG | 0.645300 | 7.4:+11205903 | MS.gene23537:CDS |
| AGCATGTCTTAGAGAACAAG+GGG | 0.647019 | 7.4:+11205904 | MS.gene23537:CDS |
| GCTAAGTATGATGAAACCAG+TGG | 0.647995 | 7.4:+11206154 | MS.gene23537:CDS |
| AACGGCGTGAGAGAAAGTCT+TGG | 0.654245 | 7.4:-11205823 | None:intergenic |
| GCCAAGAAGGGACATTGCTG+CGG | 0.662896 | 7.4:-11206900 | None:intergenic |
| GCTCTTTCGAGAACAACGAA+GGG | 0.679788 | 7.4:-11205929 | None:intergenic |
| ATGAAACCAGTGGATTGTGG+AGG | 0.691994 | 7.4:+11206164 | MS.gene23537:CDS |
| GAACACAGAAGGAAAGACAC+CGG | 0.709214 | 7.4:+11206732 | MS.gene23537:CDS |
| TGAAACCAGTGGATTGTGGA+GGG | 0.710675 | 7.4:+11206165 | MS.gene23537:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGTAAATTTTTTTAACTT+AGG | + | chr7.4:11206487-11206506 | MS.gene23537:intron | 10.0% |
| !!! | TCAAATTTAAAACTTTTTTA+AGG | + | chr7.4:11207104-11207123 | MS.gene23537:intron | 10.0% |
| !!! | ATCAAGTAACTAATTAATTT+TGG | + | chr7.4:11207187-11207206 | MS.gene23537:intron | 15.0% |
| !! | ATCAAAAGGTTTAATAATCA+TGG | + | chr7.4:11206814-11206833 | MS.gene23537:CDS | 20.0% |
| !!! | AATATCAACTTTTGAATTAG+CGG | + | chr7.4:11206582-11206601 | MS.gene23537:CDS | 20.0% |
| !!! | TAAAACTTTTTTAAGGCATA+TGG | + | chr7.4:11207111-11207130 | MS.gene23537:intron | 20.0% |
| !!! | TAATTTTGGTTATGTTATAC+AGG | + | chr7.4:11207201-11207220 | MS.gene23537:intron | 20.0% |
| !!! | TTATGAATTGTTTCTTTGAA+GGG | - | chr7.4:11206069-11206088 | None:intergenic | 20.0% |
| ! | AGGATGAAAAAAATCTAACT+GGG | + | chr7.4:11206507-11206526 | MS.gene23537:intron | 25.0% |
| ! | GATATTCCAAATATTTCTCT+AGG | - | chr7.4:11206568-11206587 | None:intergenic | 25.0% |
| ! | GTTAAAATTGCACAAGATAT+TGG | + | chr7.4:11207349-11207368 | MS.gene23537:CDS | 25.0% |
| ! | TAGGATGAAAAAAATCTAAC+TGG | + | chr7.4:11206506-11206525 | MS.gene23537:intron | 25.0% |
| ! | TGGAAAAATATGGTATCAAA+AGG | + | chr7.4:11206683-11206702 | MS.gene23537:CDS | 25.0% |
| !! | CTTATGAATTGTTTCTTTGA+AGG | - | chr7.4:11206070-11206089 | None:intergenic | 25.0% |
| !!! | ATTTGTTAGCATAGTTTTCA+AGG | - | chr7.4:11206096-11206115 | None:intergenic | 25.0% |
| !!! | ATTTTGACATGGTTCATTTT+GGG | + | chr7.4:11206655-11206674 | MS.gene23537:CDS | 25.0% |
| !!! | TGTTCTGTTTTTTTTACTAC+AGG | + | chr7.4:11206531-11206550 | MS.gene23537:intron | 25.0% |
| !!! | TTATTAAACCTTTTGATTCC+AGG | - | chr7.4:11206811-11206830 | None:intergenic | 25.0% |
| ATGAAGTTGAGTACATTTGT+AGG | + | chr7.4:11206197-11206216 | MS.gene23537:CDS | 30.0% | |
| ATTAATACTGACACAGATAC+CGG | - | chr7.4:11206464-11206483 | None:intergenic | 30.0% | |
| CACAAGATATTGGAAAAGTT+TGG | + | chr7.4:11207359-11207378 | MS.gene23537:CDS | 30.0% | |
| TTTGGTTATGTTATACAGGA+AGG | + | chr7.4:11207205-11207224 | MS.gene23537:intron | 30.0% | |
| ! | AAGTCAGGGAAAAATTTTGA+AGG | + | chr7.4:11206319-11206338 | MS.gene23537:CDS | 30.0% |
| ! | GGTGAATTTTTCTCCAAAAA+TGG | + | chr7.4:11207226-11207245 | MS.gene23537:CDS | 30.0% |
| !! | GATTTTGACATGGTTCATTT+TGG | + | chr7.4:11206654-11206673 | MS.gene23537:CDS | 30.0% |
| !!! | AGCTTTTGTTGATTTTGACA+TGG | + | chr7.4:11206644-11206663 | MS.gene23537:CDS | 30.0% |
| AAGTTGAGTACATTTGTAGG+TGG | + | chr7.4:11206200-11206219 | MS.gene23537:CDS | 35.0% | |
| AATTCAGGACTATATGCTGT+AGG | + | chr7.4:11207286-11207305 | MS.gene23537:CDS | 35.0% | |
| AGGTACAACATTTATGTCAC+CGG | - | chr7.4:11206791-11206810 | None:intergenic | 35.0% | |
| ATGCTTGTGATTACAAGTCA+GGG | + | chr7.4:11206305-11206324 | MS.gene23537:CDS | 35.0% | |
| ATGTTGTACCTGGAATCAAA+AGG | + | chr7.4:11206800-11206819 | MS.gene23537:CDS | 35.0% | |
| ATTCAGGACTATATGCTGTA+GGG | + | chr7.4:11207287-11207306 | MS.gene23537:CDS | 35.0% | |
| GAAGGACTTTCTGAATTCAA+AGG | + | chr7.4:11206271-11206290 | MS.gene23537:CDS | 35.0% | |
| GTGCTACCTAGAGAAATATT+TGG | + | chr7.4:11206559-11206578 | MS.gene23537:CDS | 35.0% | |
| TATGCTTGTGATTACAAGTC+AGG | + | chr7.4:11206304-11206323 | MS.gene23537:CDS | 35.0% | |
| TCAGAAAGTCCTTCAATTTC+AGG | - | chr7.4:11206265-11206284 | None:intergenic | 35.0% | |
| TCTGGCTAAATCTTAGTTGT+TGG | + | chr7.4:11206993-11207012 | MS.gene23537:intron | 35.0% | |
| TCTGTGTTCTTCAACTTCAA+AGG | - | chr7.4:11206721-11206740 | None:intergenic | 35.0% | |
| TTGAAGTTGAAGAACACAGA+AGG | + | chr7.4:11206721-11206740 | MS.gene23537:CDS | 35.0% | |
| TTGGGTGACATGGAAAAATA+TGG | + | chr7.4:11206673-11206692 | MS.gene23537:CDS | 35.0% | |
| ! | AACATGTCTTTTCTATCCTC+CGG | - | chr7.4:11207068-11207087 | None:intergenic | 35.0% |
| ! | CATCTTTGGGTATCCATTTT+TGG | - | chr7.4:11207242-11207261 | None:intergenic | 35.0% |
| ! | GGAAAGAAAGTTCTTGTTGT+TGG | + | chr7.4:11206340-11206359 | MS.gene23537:CDS | 35.0% |
| ! | GGTAGTTGACAGAATTGTTT+TGG | - | chr7.4:11206013-11206032 | None:intergenic | 35.0% |
| ! | TCCGACAACAAAGATTTTAC+CGG | + | chr7.4:11207046-11207065 | MS.gene23537:intron | 35.0% |
| ! | TCCGGTAAAATCTTTGTTGT+CGG | - | chr7.4:11207050-11207069 | None:intergenic | 35.0% |
| ! | TGTGTTACTCCTGAAATTGA+AGG | + | chr7.4:11206253-11206272 | MS.gene23537:CDS | 35.0% |
| !! | AAAGTTCTTGTTGTTGGATG+TGG | + | chr7.4:11206346-11206365 | MS.gene23537:CDS | 35.0% |
| !! | GCTTTGGAGAAAATTAGATC+CGG | + | chr7.4:11206769-11206788 | MS.gene23537:CDS | 35.0% |
| !! | GTTTCTTTGAAGGGTATTCA+GGG | - | chr7.4:11206060-11206079 | None:intergenic | 35.0% |
| !! | TGTTTCTTTGAAGGGTATTC+AGG | - | chr7.4:11206061-11206080 | None:intergenic | 35.0% |
| !!! | GTAAGTTCTTTTTCAGTGTC+CGG | + | chr7.4:11206442-11206461 | MS.gene23537:intron | 35.0% |
| !!! | GTTGACAGAATTGTTTTGGA+AGG | - | chr7.4:11206009-11206028 | None:intergenic | 35.0% |
| AACTTCAAAGGACCCATTGA+AGG | - | chr7.4:11206709-11206728 | None:intergenic | 40.0% | |
| AGCATGTCTTAGAGAACAAG+GGG | + | chr7.4:11205904-11205923 | MS.gene23537:CDS | 40.0% | |
| ATATTCACCTGAAGCCAAGA+AGG | - | chr7.4:11206916-11206935 | None:intergenic | 40.0% | |
| CAACTAAGATTTAGCCAGAG+CGG | - | chr7.4:11206992-11207011 | None:intergenic | 40.0% | |
| CAGCATGTCTTAGAGAACAA+GGG | + | chr7.4:11205903-11205922 | MS.gene23537:CDS | 40.0% | |
| CATGTGGAAATGGCATCTTT+GGG | - | chr7.4:11207255-11207274 | None:intergenic | 40.0% | |
| CTGATTGCATAGCATCACTA+TGG | + | chr7.4:11205951-11205970 | MS.gene23537:CDS | 40.0% | |
| GCTAAGTATGATGAAACCAG+TGG | + | chr7.4:11206154-11206173 | MS.gene23537:CDS | 40.0% | |
| GGTATCAAAAGGCCTTCAAT+GGG | + | chr7.4:11206694-11206713 | MS.gene23537:CDS | 40.0% | |
| GGTGACATAAATGTTGTACC+TGG | + | chr7.4:11206790-11206809 | MS.gene23537:CDS | 40.0% | |
| GTGAAGTTTCAATCTGTCGT+AGG | - | chr7.4:11205987-11206006 | None:intergenic | 40.0% | |
| GTTGTTGGATGTGGAAATTC+TGG | + | chr7.4:11206355-11206374 | MS.gene23537:CDS | 40.0% | |
| TAGCGGTTATGATGTTGAAG+TGG | + | chr7.4:11206599-11206618 | MS.gene23537:CDS | 40.0% | |
| TATTCACCTGAAGCCAAGAA+GGG | - | chr7.4:11206915-11206934 | None:intergenic | 40.0% | |
| TCATCATGCTTTACCTTCCA+TGG | + | chr7.4:11206405-11206424 | MS.gene23537:CDS | 40.0% | |
| TGAACACACTCGTTGAATTG+CGG | - | chr7.4:11206130-11206149 | None:intergenic | 40.0% | |
| TGGTATCAAAAGGCCTTCAA+TGG | + | chr7.4:11206693-11206712 | MS.gene23537:CDS | 40.0% | |
| TGTTGAAGTGGTTACCACTT+TGG | + | chr7.4:11206611-11206630 | MS.gene23537:CDS | 40.0% | |
| ! | AAAGCACCAATGTCCAAAAC+CGG | - | chr7.4:11206754-11206773 | None:intergenic | 40.0% |
| ! | AGTTGACTTAGATCCTCTTC+TGG | + | chr7.4:11206966-11206985 | MS.gene23537:intron | 40.0% |
| ! | GACAACAAAGATTTTACCGG+AGG | + | chr7.4:11207049-11207068 | MS.gene23537:intron | 40.0% |
| ! | TGGATGTGGAAATTCTGGAA+TGG | + | chr7.4:11206360-11206379 | MS.gene23537:CDS | 40.0% |
| !! | ATGATGAAACCAGTGGATTG+TGG | + | chr7.4:11206161-11206180 | MS.gene23537:CDS | 40.0% |
| !! | ATGGTTCATTTTGGGTGACA+TGG | + | chr7.4:11206663-11206682 | MS.gene23537:CDS | 40.0% |
| !! | GGTGAAGTTGAGCTTGTTAA+TGG | + | chr7.4:11206835-11206854 | MS.gene23537:CDS | 40.0% |
| AGCTCTTTCGAGAACAACGA+AGG | - | chr7.4:11205933-11205952 | None:intergenic | 45.0% | |
| AGCTTGTCCACAATCCAAAG+TGG | - | chr7.4:11206628-11206647 | None:intergenic | 45.0% | |
| CATGGTTGGAAGGGAAATTC+AGG | + | chr7.4:11207271-11207290 | MS.gene23537:CDS | 45.0% | |
| CCATGTGGAAATGGCATCTT+TGG | - | chr7.4:11207256-11207275 | None:intergenic | 45.0% | |
| CCATTTCCACATGGTTGGAA+GGG | + | chr7.4:11207262-11207281 | MS.gene23537:CDS | 45.0% | |
| CTGTAGGGTTCACAAAGAGA+GGG | + | chr7.4:11207302-11207321 | MS.gene23537:CDS | 45.0% | |
| GAACACACTCGTTGAATTGC+GGG | - | chr7.4:11206129-11206148 | None:intergenic | 45.0% | |
| GAACACAGAAGGAAAGACAC+CGG | + | chr7.4:11206732-11206751 | MS.gene23537:CDS | 45.0% | |
| GAATTTCCCTTCCAACCATG+TGG | - | chr7.4:11207271-11207290 | None:intergenic | 45.0% | |
| GATGCAGTTGTTCTTGCTAC+CGG | + | chr7.4:11206874-11206893 | MS.gene23537:CDS | 45.0% | |
| GCAGCATGTCTTAGAGAACA+AGG | + | chr7.4:11205902-11205921 | MS.gene23537:CDS | 45.0% | |
| GCTCTTTCGAGAACAACGAA+GGG | - | chr7.4:11205932-11205951 | None:intergenic | 45.0% | |
| GGGTATTCAGGGAAATCTTC+AGG | - | chr7.4:11206049-11206068 | None:intergenic | 45.0% | |
| GTCAATGGACCTGTGATCAT+AGG | + | chr7.4:11205854-11205873 | MS.gene23537:CDS | 45.0% | |
| GTCCATTGACCCAAATGCAA+CGG | - | chr7.4:11205844-11205863 | None:intergenic | 45.0% | |
| GTGGTTACCACTTTGGATTG+TGG | + | chr7.4:11206618-11206637 | MS.gene23537:CDS | 45.0% | |
| TCAGGGAAATCTTCAGGCAT+TGG | - | chr7.4:11206043-11206062 | None:intergenic | 45.0% | |
| TTCACAAAGAGAGGGCTTTC+TGG | + | chr7.4:11207310-11207329 | MS.gene23537:CDS | 45.0% | |
| TTCCATGGTTGTTCGTAGCT+CGG | + | chr7.4:11206420-11206439 | MS.gene23537:CDS | 45.0% | |
| ! | AACACACTCAGCATTTTCGC+CGG | - | chr7.4:11206239-11206258 | None:intergenic | 45.0% |
| ! | AGATGCCATTTCCACATGGT+TGG | + | chr7.4:11207257-11207276 | MS.gene23537:CDS | 45.0% |
| ! | CCAAAGATGCCATTTCCACA+TGG | + | chr7.4:11207253-11207272 | MS.gene23537:CDS | 45.0% |
| !! | ATGAAACCAGTGGATTGTGG+AGG | + | chr7.4:11206164-11206183 | MS.gene23537:CDS | 45.0% |
| !! | GGAAATCTTCAGGCATTGGA+AGG | - | chr7.4:11206039-11206058 | None:intergenic | 45.0% |
| !! | TCTTCAGGCATTGGAAGGTT+AGG | - | chr7.4:11206034-11206053 | None:intergenic | 45.0% |
| !! | TGAAACCAGTGGATTGTGGA+GGG | + | chr7.4:11206165-11206184 | MS.gene23537:CDS | 45.0% |
| !!! | AAGACACCGGTTTTGGACAT+TGG | + | chr7.4:11206745-11206764 | MS.gene23537:CDS | 45.0% |
| !!! | AGAAGGAAAGACACCGGTTT+TGG | + | chr7.4:11206738-11206757 | MS.gene23537:CDS | 45.0% |
| !!! | GGTTTTGGACATTGGTGCTT+TGG | + | chr7.4:11206753-11206772 | MS.gene23537:CDS | 45.0% |
| AACGGCGTGAGAGAAAGTCT+TGG | - | chr7.4:11205826-11205845 | None:intergenic | 50.0% | |
| ATCATAGGTGCAGGTCCATC+TGG | + | chr7.4:11205869-11205888 | MS.gene23537:CDS | 50.0% | |
| CAATGTCCCTTCTTGGCTTC+AGG | + | chr7.4:11206906-11206925 | MS.gene23537:CDS | 50.0% | |
| CCCTTCCAACCATGTGGAAA+TGG | - | chr7.4:11207265-11207284 | None:intergenic | 50.0% | |
| CTTAACCCTCCACAATCCAC+TGG | - | chr7.4:11206173-11206192 | None:intergenic | 50.0% | |
| GAGCTACGAACAACCATGGA+AGG | - | chr7.4:11206421-11206440 | None:intergenic | 50.0% | |
| GCCATTTCCACATGGTTGGA+AGG | + | chr7.4:11207261-11207280 | MS.gene23537:CDS | 50.0% | |
| GCTGTAGGGTTCACAAAGAG+AGG | + | chr7.4:11207301-11207320 | MS.gene23537:CDS | 50.0% | |
| TACCGAGCTACGAACAACCA+TGG | - | chr7.4:11206425-11206444 | None:intergenic | 50.0% | |
| TCTCTCACGCCGTTGCATTT+GGG | + | chr7.4:11205832-11205851 | MS.gene23537:CDS | 50.0% | |
| TTCTCTCACGCCGTTGCATT+TGG | + | chr7.4:11205831-11205850 | MS.gene23537:CDS | 50.0% | |
| !! | AGGTCCATCTGGTCTTGCAA+CGG | + | chr7.4:11205880-11205899 | MS.gene23537:CDS | 50.0% |
| !! | AGGTGGCTTGTTGTTGCTAC+CGG | + | chr7.4:11206217-11206236 | MS.gene23537:CDS | 50.0% |
| ACCGCAGCAATGTCCCTTCT+TGG | + | chr7.4:11206899-11206918 | MS.gene23537:CDS | 55.0% | |
| AGGGACATTGCTGCGGTAAC+CGG | - | chr7.4:11206896-11206915 | None:intergenic | 55.0% | |
| CGCCGTTGCATTTGGGTCAA+TGG | + | chr7.4:11205839-11205858 | MS.gene23537:CDS | 55.0% | |
| GCCAAGAAGGGACATTGCTG+CGG | - | chr7.4:11206903-11206922 | None:intergenic | 55.0% | |
| GGACCTGCACCTATGATCAC+AGG | - | chr7.4:11205866-11205885 | None:intergenic | 55.0% | |
| GGACCTGTGATCATAGGTGC+AGG | + | chr7.4:11205860-11205879 | MS.gene23537:CDS | 55.0% | |
| AGATCCTCTTCTGGCCGCTC+TGG | + | chr7.4:11206975-11206994 | MS.gene23537:intron | 60.0% | |
| GCTGCCGTTGCAAGACCAGA+TGG | - | chr7.4:11205887-11205906 | None:intergenic | 60.0% | |
| TTAGCCAGAGCGGCCAGAAG+AGG | - | chr7.4:11206982-11207001 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 11205794 | 11207450 | 11205794 | ID=MS.gene23537 |
| chr7.4 | mRNA | 11205794 | 11207450 | 11205794 | ID=MS.gene23537.t1;Parent=MS.gene23537 |
| chr7.4 | exon | 11205794 | 11206441 | 11205794 | ID=MS.gene23537.t1.exon1;Parent=MS.gene23537.t1 |
| chr7.4 | CDS | 11205794 | 11206441 | 11205794 | ID=cds.MS.gene23537.t1;Parent=MS.gene23537.t1 |
| chr7.4 | exon | 11206553 | 11206927 | 11206553 | ID=MS.gene23537.t1.exon2;Parent=MS.gene23537.t1 |
| chr7.4 | CDS | 11206553 | 11206927 | 11206553 | ID=cds.MS.gene23537.t1;Parent=MS.gene23537.t1 |
| chr7.4 | exon | 11207223 | 11207450 | 11207223 | ID=MS.gene23537.t1.exon3;Parent=MS.gene23537.t1 |
| chr7.4 | CDS | 11207223 | 11207450 | 11207223 | ID=cds.MS.gene23537.t1;Parent=MS.gene23537.t1 |
| Gene Sequence |
| Protein sequence |
