AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059136

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059136.t1 MTR_1g008380 98.144 431 7 1 1 431 1 430 0.0 868
MS.gene059136.t1 MTR_3g109520 76.000 425 97 2 1 424 1 421 0.0 667
MS.gene059136.t1 MTR_6g086870 66.339 407 130 4 22 423 1 405 0.0 562
MS.gene059136.t1 MTR_1g069275 61.353 414 157 3 19 431 1 412 0.0 523
MS.gene059136.t1 MTR_1g046230 59.796 393 154 2 35 424 16 407 9.60e-178 503
MS.gene059136.t1 MTR_1g011630 61.917 386 141 3 36 420 9 389 1.96e-176 499
MS.gene059136.t1 MTR_7g099330 58.145 399 160 3 34 431 15 407 2.99e-174 494
MS.gene059136.t1 MTR_7g099160 56.522 322 133 3 111 431 213 528 5.10e-128 380
MS.gene059136.t1 MTR_7g107690 45.308 373 197 3 44 414 9 376 1.82e-117 348
MS.gene059136.t1 MTR_7g107710 47.326 374 188 5 44 414 7 374 2.26e-114 340
MS.gene059136.t1 MTR_8g432640 43.200 375 206 3 44 416 7 376 1.67e-113 338
MS.gene059136.t1 MTR_5g033260 42.706 377 209 3 44 418 7 378 1.37e-111 333
MS.gene059136.t1 MTR_3g088925 42.711 391 214 5 44 431 8 391 2.35e-107 323
MS.gene059136.t1 MTR_3g088955 42.967 391 213 5 44 431 8 391 1.42e-106 321
MS.gene059136.t1 MTR_3g088945 43.048 374 206 3 44 415 8 376 2.85e-106 320
MS.gene059136.t1 MTR_4g051642 40.979 388 219 5 44 429 8 387 4.89e-102 309
MS.gene059136.t1 MTR_3g096030 35.227 176 89 2 44 218 7 158 1.77e-35 129
MS.gene059136.t1 MTR_8g037880 24.880 209 129 6 45 227 6 212 1.69e-13 72.4
MS.gene059136.t1 MTR_3g437580 23.978 367 172 12 45 373 15 312 2.75e-13 71.2
MS.gene059136.t1 MTR_3g437580 25.620 242 130 8 45 248 15 244 8.91e-13 70.1
MS.gene059136.t1 MTR_2g450310 25.403 248 142 11 45 252 7 251 9.34e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059136.t1 AT5G25620 66.905 420 124 4 6 423 7 413 0.0 571
MS.gene059136.t1 AT5G25620 66.905 420 124 4 6 423 7 413 0.0 571
MS.gene059136.t1 AT4G13260 66.102 413 125 2 4 415 3 401 0.0 559
MS.gene059136.t1 AT1G04610 60.253 395 152 2 34 424 28 421 1.91e-178 505
MS.gene059136.t1 AT4G28720 56.867 415 174 3 19 429 1 414 4.19e-177 501
MS.gene059136.t1 AT1G04180 58.354 413 169 3 19 430 1 411 3.06e-175 496
MS.gene059136.t1 AT5G43890 58.191 409 167 3 19 424 1 408 4.99e-175 496
MS.gene059136.t1 AT2G33230 58.993 417 155 3 22 424 1 415 2.64e-173 492
MS.gene059136.t1 AT5G11320 59.055 381 150 2 38 418 12 386 1.26e-165 472
MS.gene059136.t1 AT4G32540 56.566 396 166 3 29 423 7 397 8.92e-163 464
MS.gene059136.t1 AT4G32540 56.533 398 165 4 29 423 7 399 3.39e-161 461
MS.gene059136.t1 AT4G13260 64.396 323 100 2 4 325 3 311 2.29e-147 422
MS.gene059136.t1 AT5G11320 59.021 327 129 1 38 364 12 333 7.30e-141 407
MS.gene059136.t1 AT4G13260 67.354 291 94 1 126 415 8 298 2.71e-138 399
MS.gene059136.t1 AT1G21430 48.267 375 184 5 44 415 10 377 2.17e-120 356
MS.gene059136.t1 AT1G48910 44.772 373 199 3 44 414 6 373 1.17e-116 346
MS.gene059136.t1 AT5G61290 28.125 224 114 7 45 228 18 234 7.93e-14 73.6
MS.gene059136.t1 AT5G45180 24.789 355 194 14 45 355 15 340 1.48e-13 72.8
MS.gene059136.t1 AT5G07800 26.818 220 122 7 45 227 18 235 3.09e-13 71.6
MS.gene059136.t1 AT1G62560 22.511 231 141 5 45 246 15 236 5.62e-13 70.5
MS.gene059136.t1 AT1G62560 22.511 231 141 6 45 246 15 236 6.01e-13 70.9
MS.gene059136.t1 AT1G65860 21.834 229 144 4 45 246 15 235 7.38e-12 67.4
MS.gene059136.t1 AT1G12200 24.900 249 141 9 59 270 30 269 8.39e-12 67.0
MS.gene059136.t1 AT1G12200 25.523 239 132 9 59 260 30 259 1.01e-11 67.0

Find 112 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAACAATTCATAGAGTATT+TGG 0.149405 1.2:+11380840 MS.gene059136:CDS
CTTCAAGTGATAGATGTTTA+TGG 0.160401 1.2:+11380596 MS.gene059136:CDS
AGTTTGTGAGCTTCCTTTAA+TGG 0.176443 1.2:+11380783 MS.gene059136:CDS
ATGCTGGGAAAATCAACTTT+TGG 0.272060 1.2:+11383211 MS.gene059136:CDS
GGAAGCTCACAAACTTGTTT+TGG 0.287110 1.2:-11380775 None:intergenic
ATGAGTTTGGTGGTAGTATT+AGG 0.292739 1.2:+11381061 MS.gene059136:CDS
GTTGTTGGATGTGGAAATTC+AGG 0.297314 1.2:+11381135 MS.gene059136:CDS
GGTGAGGAGTGAGGGGAAGG+CGG 0.303591 1.2:+11380951 MS.gene059136:CDS
TCTATGAATTGTTGCTTTGT+TGG 0.308851 1.2:-11380832 None:intergenic
CCACTAGGGAATTCCATTAA+AGG 0.311291 1.2:-11380796 None:intergenic
TTCAGGTATGGAAGTTTGTT+TGG 0.318132 1.2:+11381152 MS.gene059136:CDS
ATAACTCACCTTTAACCAAT+AGG 0.321026 1.2:-11384424 None:intergenic
CGGTTTGGTTCGGCCTCGGT+TGG 0.332146 1.2:+11383330 MS.gene059136:CDS
TAATGTACCCTATTGGTTAA+AGG 0.334508 1.2:+11384416 MS.gene059136:CDS
GTTTAGAGGGAAGAAAGTTT+TGG 0.342078 1.2:+11381113 MS.gene059136:CDS
GTGAGGAGTGAGGGGAAGGC+GGG 0.346356 1.2:+11380952 MS.gene059136:CDS
TTTCACCTTTCCATCCATTA+GGG 0.348305 1.2:-11385181 None:intergenic
AATGGATGGAAAGGTGAAAA+TGG 0.349533 1.2:+11385185 MS.gene059136:CDS
GACGCCATCATATTGGCAAC+TGG 0.352332 1.2:+11384384 MS.gene059136:CDS
ATAGTAGGAGCAGGACCTTC+AGG 0.355072 1.2:+11380634 MS.gene059136:CDS
GATAGATGTTTATGGATTCC+AGG 0.359227 1.2:+11380604 MS.gene059136:CDS
GCAGCATATCTAAAACAAAA+AGG 0.363705 1.2:+11380667 MS.gene059136:CDS
AGCACATGATCCTTTATTCA+TGG 0.372272 1.2:+11380537 MS.gene059136:CDS
TGTTGCTTTGTTGGATATGT+TGG 0.373958 1.2:-11380823 None:intergenic
CCATTAGGGAATGGCTTCCT+AGG 0.378690 1.2:-11385167 None:intergenic
TAACTCACCTTTAACCAATA+GGG 0.380301 1.2:-11384423 None:intergenic
ATTGAAGGAGTTGATGAGTT+TGG 0.388219 1.2:+11381048 MS.gene059136:CDS
GGTTCGGTTTGGTTCGGCCT+CGG 0.399694 1.2:+11383326 MS.gene059136:CDS
GGATAAGGGTATGTTCTCTA+AGG 0.417839 1.2:+11385133 MS.gene059136:intron
CCTAGGAAGCCATTCCCTAA+TGG 0.421132 1.2:+11385167 MS.gene059136:CDS
TTCACTAAACGTGGACTACT+TGG 0.424605 1.2:+11385224 MS.gene059136:CDS
GAGGGTGAGGAGTGAGGGGA+AGG 0.436723 1.2:+11380948 MS.gene059136:CDS
GAATCTCTAACCACAATAGA+AGG 0.439167 1.2:-11381198 None:intergenic
CAATACAGAACGGTTCGGTT+TGG 0.439433 1.2:+11383315 MS.gene059136:CDS
TTCCCAGCATATCTCTTGGC+AGG 0.440777 1.2:-11383198 None:intergenic
ACAAAAGTAATGTACCCTAT+TGG 0.449367 1.2:+11384409 MS.gene059136:CDS
CAAATTGTATAGCTTCACTA+TGG 0.453940 1.2:+11380716 MS.gene059136:CDS
CATCCTGCCAAGAGATATGC+TGG 0.456200 1.2:+11383195 MS.gene059136:CDS
GAGTGAGGGGAAGGCGGGAA+TGG 0.461670 1.2:+11380957 MS.gene059136:CDS
ATGAAGACGAAGACGATCAT+AGG 0.471519 1.2:-11380749 None:intergenic
CGGTGGTTGATCGTTGCAAC+CGG 0.474729 1.2:+11380997 MS.gene059136:CDS
GTACCCAGTTGCCAATATGA+TGG 0.475832 1.2:-11384388 None:intergenic
ATGGTATATGTGCAGGATAA+GGG 0.476167 1.2:+11385119 MS.gene059136:intron
GAATGCTGAGGCGGTTGTGC+CGG 0.478192 1.2:+11381023 MS.gene059136:CDS
CAGAACGGTTCGGTTTGGTT+CGG 0.479807 1.2:+11383320 MS.gene059136:CDS
GGTCCTGCTCCTACTATCAA+TGG 0.486209 1.2:-11380628 None:intergenic
AAAAGTGGTGAAGAGTTTAG+AGG 0.487823 1.2:+11381099 MS.gene059136:CDS
AAAATTTCGATATTAGGCCT+TGG 0.488183 1.2:+11380875 MS.gene059136:CDS
TGTCCATGTGGTTGCTAAAG+TGG 0.490674 1.2:+11383236 MS.gene059136:CDS
CTGAAGATATTGAACGGTGT+TGG 0.492435 1.2:+11385273 MS.gene059136:CDS
CTTGGCAATACAGAACGGTT+CGG 0.494535 1.2:+11383310 MS.gene059136:CDS
GAAAATGGCCTCTTTGCTGT+TGG 0.494708 1.2:+11385200 MS.gene059136:CDS
TGGTTACCGAGTTTGTTTGT+CGG 0.495604 1.2:+11380977 MS.gene059136:CDS
TGGCAAGGGCACCCACATCT+AGG 0.496006 1.2:-11383393 None:intergenic
AAAGTGGTGAAGAGTTTAGA+GGG 0.496476 1.2:+11381100 MS.gene059136:CDS
AAAGTGGTTACCCGTGCAAC+TGG 0.496540 1.2:+11383252 MS.gene059136:CDS
CCTTTCCATCCATTAGGGAA+TGG 0.499153 1.2:-11385176 None:intergenic
GATCTTTCTAGTATTAAACT+TGG 0.510703 1.2:-11380694 None:intergenic
GGTTTGGTTCGGCCTCGGTT+GGG 0.511085 1.2:+11383331 MS.gene059136:CDS
GCGGTTGTGCCGGAGATTGA+AGG 0.514454 1.2:+11381033 MS.gene059136:CDS
AGTTATCTAAGAGAATTAGA+AGG 0.522034 1.2:+11380508 MS.gene059136:CDS
AACCGCCTCAGCATTCTCTC+CGG 0.523442 1.2:-11381016 None:intergenic
TCATCAACTCCTTCAATCTC+CGG 0.526332 1.2:-11381042 None:intergenic
GCTGAGTTTGATGCTACACT+TGG 0.526718 1.2:+11380919 MS.gene059136:CDS
TTTGGAGGGTGAGGAGTGAG+GGG 0.529144 1.2:+11380944 MS.gene059136:CDS
GGTATGTTCTCTAAGGAAGA+TGG 0.529812 1.2:+11385140 MS.gene059136:CDS
ATTCCAGGTCCATTGATAGT+AGG 0.534394 1.2:+11380619 MS.gene059136:CDS
CATACTAGTTTGTATAAAAG+TGG 0.538558 1.2:+11381084 MS.gene059136:CDS
TCCTTCGTTCAGGTACGTCC+AGG 0.542147 1.2:+11384303 MS.gene059136:intron
ATGTAATCCACCAGTTGCAC+GGG 0.546866 1.2:-11383262 None:intergenic
TGATGCTGCTCCTTCTATTG+TGG 0.549061 1.2:+11381188 MS.gene059136:CDS
TGGACTACTTGGTGCATCCA+TGG 0.549422 1.2:+11385235 MS.gene059136:CDS
ACATCCTTCTCACTGTGTCA+TGG 0.550548 1.2:+11383281 MS.gene059136:CDS
GGATATGTTGGAAAACCACT+AGG 0.555382 1.2:-11380811 None:intergenic
GATTAAAAGAGGAGACATCA+AGG 0.563954 1.2:+11383417 MS.gene059136:CDS
CCATTCCCTAATGGATGGAA+AGG 0.565023 1.2:+11385176 MS.gene059136:CDS
GCCCTTGCCAAGATTAAAAG+AGG 0.565947 1.2:+11383406 MS.gene059136:CDS
CCTTTAATGGAATTCCCTAG+TGG 0.567347 1.2:+11380796 MS.gene059136:CDS
GGAAGCCATTCCCTAATGGA+TGG 0.574345 1.2:+11385171 MS.gene059136:CDS
GCTGTTGGTTTCACTAAACG+TGG 0.576427 1.2:+11385215 MS.gene059136:CDS
GAAGGAGTTGATGAGTTTGG+TGG 0.576519 1.2:+11381051 MS.gene059136:CDS
AAAGACACCGGTCCTAGATG+TGG 0.578940 1.2:+11383381 MS.gene059136:CDS
GGTCCATTGATAGTAGGAGC+AGG 0.584095 1.2:+11380625 MS.gene059136:CDS
GATGTAATCCACCAGTTGCA+CGG 0.587259 1.2:-11383263 None:intergenic
GCTGCTACTGCTAGTCCTGA+AGG 0.587967 1.2:-11380649 None:intergenic
GTGGTTACCCGTGCAACTGG+TGG 0.590830 1.2:+11383255 MS.gene059136:CDS
AGGGCACCCACATCTAGGAC+CGG 0.591712 1.2:-11383388 None:intergenic
ACGCCATCATATTGGCAACT+GGG 0.591722 1.2:+11384385 MS.gene059136:CDS
CTAAGGAAGATGGATACCCT+AGG 0.600641 1.2:+11385150 MS.gene059136:CDS
TGGATGTGGAAATTCAGGTA+TGG 0.602948 1.2:+11381140 MS.gene059136:CDS
CATTAGGGAATGGCTTCCTA+GGG 0.603860 1.2:-11385166 None:intergenic
TGAACGGTGTTGGAAAGTTG+AGG 0.604949 1.2:+11385283 MS.gene059136:CDS
GCTCCTACTATCAATGGACC+TGG 0.607612 1.2:-11380622 None:intergenic
ACTGTGTCATGGTTAATGCT+TGG 0.622906 1.2:+11383292 MS.gene059136:CDS
AGGTACGTCCAGGCATCAAG+AGG 0.629400 1.2:+11384313 MS.gene059136:intron
TAATGCTTGGCAATACAGAA+CGG 0.631117 1.2:+11383305 MS.gene059136:CDS
TAGTGAAACCAACAGCAAAG+AGG 0.634282 1.2:-11385208 None:intergenic
AAGACACCGGTCCTAGATGT+GGG 0.638855 1.2:+11383382 MS.gene059136:CDS
TACACAGTGGAATTTGCTGA+TGG 0.646963 1.2:+11384345 MS.gene059136:CDS
TTACCGAGTTTGTTTGTCGG+TGG 0.653194 1.2:+11380980 MS.gene059136:CDS
TTAACCATGACACAGTGAGA+AGG 0.654806 1.2:-11383285 None:intergenic
CAACCACCGACAAACAAACT+CGG 0.654999 1.2:-11380983 None:intergenic
ATATAGCTGAAGATATTGAA+CGG 0.658373 1.2:+11385267 MS.gene059136:CDS
GATATGTTGGAAAACCACTA+GGG 0.658620 1.2:-11380810 None:intergenic
AACCGGAGAGAATGCTGAGG+CGG 0.661182 1.2:+11381014 MS.gene059136:CDS
TAACCACTTTAGCAACCACA+TGG 0.668567 1.2:-11383239 None:intergenic
AAAACTGTCTGGAAAGACAC+CGG 0.678715 1.2:+11383369 MS.gene059136:CDS
AGTTCTAGAGGACCCAACCG+AGG 0.681521 1.2:-11383343 None:intergenic
ATCCTGCCAAGAGATATGCT+GGG 0.697559 1.2:+11383196 MS.gene059136:CDS
ATAACTGTCTCATTGAACCA+AGG 0.702457 1.2:-11380892 None:intergenic
TGCAACCGGAGAGAATGCTG+AGG 0.712718 1.2:+11381011 MS.gene059136:CDS
GAGGTTAAAACGCTACACAG+TGG 0.723275 1.2:+11384332 MS.gene059136:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAATGTATAAATAAA+GGG - chr1.2:11383036-11383055 None:intergenic 10.0%
!! AATTAGAGTTATATTATATT+GGG - chr1.2:11382971-11382990 None:intergenic 10.0%
!! ACATTATAAAATATTTACAT+TGG + chr1.2:11382642-11382661 MS.gene059136:intron 10.0%
!! ATGCAAAAAAAAAAATTATA+CGG + chr1.2:11384691-11384710 MS.gene059136:intron 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - chr1.2:11383037-11383056 None:intergenic 10.0%
!! TAATTAGAGTTATATTATAT+TGG - chr1.2:11382972-11382991 None:intergenic 10.0%
!!! ATTTTTTACTAATAAATTGA+CGG + chr1.2:11383995-11384014 MS.gene059136:intron 10.0%
!!! TATAAAGTTGTTTTTATTTT+TGG + chr1.2:11381440-11381459 MS.gene059136:intron 10.0%
!! AAAAAACAAAAAAGAGAAAA+AGG - chr1.2:11382058-11382077 None:intergenic 15.0%
!! AATAATACAAATAACTGAAA+TGG + chr1.2:11385100-11385119 MS.gene059136:intron 15.0%
!! AATCAAATCATACTTTATTA+AGG + chr1.2:11383660-11383679 MS.gene059136:intron 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - chr1.2:11383035-11383054 None:intergenic 15.0%
!! TCTAATATAGCATATAAAAT+AGG + chr1.2:11381709-11381728 MS.gene059136:intron 15.0%
!!! AAATATTTTCAAGAGTTTAA+CGG - chr1.2:11384180-11384199 None:intergenic 15.0%
!!! ATTAGTTTTAAATAAGGATT+CGG + chr1.2:11383883-11383902 MS.gene059136:intron 15.0%
!!! ATTCAAAAATACTTTTGAAA+TGG - chr1.2:11381792-11381811 None:intergenic 15.0%
!!! GTAACTAATTTTTTTTAAGA+AGG - chr1.2:11381614-11381633 None:intergenic 15.0%
!!! TGCTATTTTTCATATTATTA+AGG - chr1.2:11382196-11382215 None:intergenic 15.0%
!! AAAGTGGAATATATTGTATT+GGG - chr1.2:11383012-11383031 None:intergenic 20.0%
!! AATTTCCATGTTTCTTAATT+AGG - chr1.2:11381582-11381601 None:intergenic 20.0%
!! AGAAAGAAAAACAAAGTAAA+AGG - chr1.2:11381247-11381266 None:intergenic 20.0%
!! AGAAATTAAAGAATGCATAA+TGG - chr1.2:11384461-11384480 None:intergenic 20.0%
!! ATCAAAAATCTTAAGATCTT+AGG - chr1.2:11382715-11382734 None:intergenic 20.0%
!! ATTCCAAAAATTTCGATATT+AGG + chr1.2:11380869-11380888 MS.gene059136:CDS 20.0%
!! ATTCTATGACTAAAAAGAAA+AGG - chr1.2:11383552-11383571 None:intergenic 20.0%
!! GAAAAATAGCACTTAAATTA+TGG + chr1.2:11382205-11382224 MS.gene059136:intron 20.0%
!! GAAATTAAAGAATGCATAAT+GGG - chr1.2:11384460-11384479 None:intergenic 20.0%
!! GTTGAAAATCTTTATGATAA+TGG + chr1.2:11382504-11382523 MS.gene059136:intron 20.0%
!! TATTTCGAATAAGGAAAATA+CGG + chr1.2:11384989-11385008 MS.gene059136:intron 20.0%
!!! AAGCTTTTTTATTTCGAATA+AGG + chr1.2:11384980-11384999 MS.gene059136:intron 20.0%
!!! AGTATGTTTTGAATAAAAAC+AGG - chr1.2:11381486-11381505 None:intergenic 20.0%
!!! ATATTGAATTTTATGCTACA+AGG - chr1.2:11381544-11381563 None:intergenic 20.0%
!!! ATCATTTTTTCCATGAATAA+AGG - chr1.2:11380550-11380569 None:intergenic 20.0%
!!! ATCTAACACTTAAAGATTTT+GGG + chr1.2:11382350-11382369 MS.gene059136:intron 20.0%
!!! ATTTTCAAAATTCAGATAGA+TGG - chr1.2:11385056-11385075 None:intergenic 20.0%
!!! CATGATATTTCACTTTTTTT+GGG + chr1.2:11381848-11381867 MS.gene059136:intron 20.0%
!!! GACACTTTTTTTTAGTAAAT+GGG - chr1.2:11382902-11382921 None:intergenic 20.0%
!!! GATGAAAATATGTTTTTACT+TGG + chr1.2:11384725-11384744 MS.gene059136:intron 20.0%
!!! GTATGTTTTGAATAAAAACA+GGG - chr1.2:11381485-11381504 None:intergenic 20.0%
!!! TATCTAACACTTAAAGATTT+TGG + chr1.2:11382349-11382368 MS.gene059136:intron 20.0%
!!! TTCGACATTAGTTTTAAATA+AGG + chr1.2:11383877-11383896 MS.gene059136:intron 20.0%
! AAAACAAAACACAACTTTGA+AGG - chr1.2:11381688-11381707 None:intergenic 25.0%
! AAAGTGACACTAAAATCTTA+AGG - chr1.2:11383478-11383497 None:intergenic 25.0%
! AAATAGCACTTAAATTATGG+CGG + chr1.2:11382208-11382227 MS.gene059136:intron 25.0%
! AGTTATCTAAGAGAATTAGA+AGG + chr1.2:11380508-11380527 MS.gene059136:CDS 25.0%
! ATATAGCTGAAGATATTGAA+CGG + chr1.2:11385267-11385286 MS.gene059136:CDS 25.0%
! ATCTTTCAAACAAGAAAGAA+AGG - chr1.2:11383616-11383635 None:intergenic 25.0%
! CTCTACTTGTAATAATACAA+GGG - chr1.2:11381975-11381994 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr1.2:11383013-11383032 None:intergenic 25.0%
! GTATTCATAATTTCATGTAG+TGG + chr1.2:11381736-11381755 MS.gene059136:intron 25.0%
! GTCAACTAAGATAAAACAAA+TGG - chr1.2:11384512-11384531 None:intergenic 25.0%
! TAAGAAACATGGAAATTTGT+CGG + chr1.2:11381585-11381604 MS.gene059136:intron 25.0%
! TATCTCCTAATTAAGAAACA+TGG + chr1.2:11381574-11381593 MS.gene059136:intron 25.0%
! TGAATTTACTTCAATATGTG+TGG - chr1.2:11383821-11383840 None:intergenic 25.0%
!! AAAGATTTTCCATGATCATT+AGG + chr1.2:11383630-11383649 MS.gene059136:intron 25.0%
!! CATACTAGTTTGTATAAAAG+TGG + chr1.2:11381084-11381103 MS.gene059136:CDS 25.0%
!! CGAAAACTTTGAAAAAAGAT+TGG + chr1.2:11384886-11384905 MS.gene059136:intron 25.0%
!! GATCTTTCTAGTATTAAACT+TGG - chr1.2:11380697-11380716 None:intergenic 25.0%
!! GTCCAAATAAACTTATTTCT+GGG - chr1.2:11383528-11383547 None:intergenic 25.0%
!! GTGGTAATTAAATCTTTTGT+AGG + chr1.2:11384067-11384086 MS.gene059136:intron 25.0%
!! TCATAAAGATTTTCAACACA+AGG - chr1.2:11382501-11382520 None:intergenic 25.0%
!!! ATGCTGATTTTCATAATCAT+AGG - chr1.2:11381407-11381426 None:intergenic 25.0%
!!! CTTTTTTAACTTTTCCGTTT+CGG + chr1.2:11381269-11381288 MS.gene059136:intron 25.0%
!!! GAGTACTTTTTCATAGAAAA+AGG + chr1.2:11383102-11383121 MS.gene059136:intron 25.0%
!!! GCATGATATTTCACTTTTTT+TGG + chr1.2:11381847-11381866 MS.gene059136:intron 25.0%
!!! GGACACTTTTTTTTAGTAAA+TGG - chr1.2:11382903-11382922 None:intergenic 25.0%
!!! GTTTTTTCCTTTCACTTTTT+TGG + chr1.2:11382079-11382098 MS.gene059136:intron 25.0%
!!! TATTTCCCTATTAGTCTTAA+TGG + chr1.2:11383795-11383814 MS.gene059136:intron 25.0%
!!! TCCAAATAAACTTATTTCTG+GGG - chr1.2:11383527-11383546 None:intergenic 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG - chr1.2:11382924-11382943 None:intergenic 25.0%
AAAAAGGTAAGAGCTTATGT+GGG - chr1.2:11382042-11382061 None:intergenic 30.0%
AAAATTTCGATATTAGGCCT+TGG + chr1.2:11380875-11380894 MS.gene059136:CDS 30.0%
AAGAAACATGGAAATTTGTC+GGG + chr1.2:11381586-11381605 MS.gene059136:intron 30.0%
ACAAAAGTAATGTACCCTAT+TGG + chr1.2:11384409-11384428 MS.gene059136:CDS 30.0%
ACACTAATTATAACTACACG+TGG + chr1.2:11384048-11384067 MS.gene059136:intron 30.0%
ACCCCAGAAATAAGTTTATT+TGG + chr1.2:11383523-11383542 MS.gene059136:intron 30.0%
ATAACTCACCTTTAACCAAT+AGG - chr1.2:11384427-11384446 None:intergenic 30.0%
ATATGATATCGTGATGAGAT+CGG - chr1.2:11384597-11384616 None:intergenic 30.0%
ATCCGTGTGAAAAATCAAAT+TGG + chr1.2:11383057-11383076 MS.gene059136:intron 30.0%
CAAAATTCAGATAGATGGAT+AGG - chr1.2:11385051-11385070 None:intergenic 30.0%
CAAATTGTATAGCTTCACTA+TGG + chr1.2:11380716-11380735 MS.gene059136:CDS 30.0%
CACAATCAAACAACTGTTAT+AGG + chr1.2:11383919-11383938 MS.gene059136:intron 30.0%
CGTCCAAATAAACTTATTTC+TGG - chr1.2:11383529-11383548 None:intergenic 30.0%
CTAGACTTAAAACTTAGTTG+TGG - chr1.2:11382150-11382169 None:intergenic 30.0%
CTTCAAGTGATAGATGTTTA+TGG + chr1.2:11380596-11380615 MS.gene059136:CDS 30.0%
GCTCTACTTGTAATAATACA+AGG - chr1.2:11381976-11381995 None:intergenic 30.0%
GTATTATTACAAGTAGAGCA+TGG + chr1.2:11381977-11381996 MS.gene059136:intron 30.0%
TAACTCACCTTTAACCAATA+GGG - chr1.2:11384426-11384445 None:intergenic 30.0%
TCCGTGTGAAAAATCAAATT+GGG + chr1.2:11383058-11383077 MS.gene059136:intron 30.0%
TGTATAAATAAAGGGGAAAG+TGG - chr1.2:11383028-11383047 None:intergenic 30.0%
! AGGCCTAATATCGAAATTTT+TGG - chr1.2:11380875-11380894 None:intergenic 30.0%
! ATTTTATGTCCCCTTTGTTA+CGG - chr1.2:11383945-11383964 None:intergenic 30.0%
! CTTTTGCAAAGAAACATCAT+GGG - chr1.2:11381941-11381960 None:intergenic 30.0%
! GCAACAATTCATAGAGTATT+TGG + chr1.2:11380840-11380859 MS.gene059136:CDS 30.0%
! GCAGCATATCTAAAACAAAA+AGG + chr1.2:11380667-11380686 MS.gene059136:CDS 30.0%
! GTGAAATGAGTCAGTTATTT+TGG - chr1.2:11382925-11382944 None:intergenic 30.0%
! TAATGTACCCTATTGGTTAA+AGG + chr1.2:11384416-11384435 MS.gene059136:CDS 30.0%
! TCTTTTGCAAAGAAACATCA+TGG - chr1.2:11381942-11381961 None:intergenic 30.0%
!! AAAGATTTTGGGTGAAGATA+TGG + chr1.2:11382361-11382380 MS.gene059136:intron 30.0%
!! TCTATGAATTGTTGCTTTGT+TGG - chr1.2:11380835-11380854 None:intergenic 30.0%
!! TGTTTTGAATAAAAACAGGG+AGG - chr1.2:11381482-11381501 None:intergenic 30.0%
!! TTCTCTATTGGTTTGATTGA+AGG + chr1.2:11383168-11383187 MS.gene059136:intron 30.0%
!!! AGCTATATTTTTTGCATCCA+TGG - chr1.2:11385255-11385274 None:intergenic 30.0%
!!! CTAAGTTTTAAGTCTAGTCA+TGG + chr1.2:11382153-11382172 MS.gene059136:intron 30.0%
!!! TGATGGTACTTTTTCTCTAT+TGG + chr1.2:11383156-11383175 MS.gene059136:intron 30.0%
AAAAGTGGTGAAGAGTTTAG+AGG + chr1.2:11381099-11381118 MS.gene059136:CDS 35.0%
AAACATCATGGGAAGGAAAA+AGG - chr1.2:11381930-11381949 None:intergenic 35.0%
AAAGTGGTGAAGAGTTTAGA+GGG + chr1.2:11381100-11381119 MS.gene059136:CDS 35.0%
AACACAATTAAGGCCTATCA+AGG + chr1.2:11382005-11382024 MS.gene059136:intron 35.0%
AACTGAAATGGTATATGTGC+AGG + chr1.2:11385112-11385131 MS.gene059136:intron 35.0%
AATAGTAGCATCAGAGCATA+TGG + chr1.2:11382452-11382471 MS.gene059136:intron 35.0%
AATGGATGGAAAGGTGAAAA+TGG + chr1.2:11385185-11385204 MS.gene059136:CDS 35.0%
AATGGTATATGTGCAGGATA+AGG + chr1.2:11385118-11385137 MS.gene059136:intron 35.0%
ACACAATTAAGGCCTATCAA+GGG + chr1.2:11382006-11382025 MS.gene059136:intron 35.0%
AGCACATGATCCTTTATTCA+TGG + chr1.2:11380537-11380556 MS.gene059136:CDS 35.0%
AGTTTGTGAGCTTCCTTTAA+TGG + chr1.2:11380783-11380802 MS.gene059136:CDS 35.0%
ATAACTGTCTCATTGAACCA+AGG - chr1.2:11380895-11380914 None:intergenic 35.0%
ATGGTATATGTGCAGGATAA+GGG + chr1.2:11385119-11385138 MS.gene059136:intron 35.0%
ATTGTGCAAATTCATGTGTG+TGG + chr1.2:11382741-11382760 MS.gene059136:intron 35.0%
CACTAACGACATGTGAAAAA+AGG + chr1.2:11384553-11384572 MS.gene059136:intron 35.0%
CCAAACACCAAAAAAGTGAA+AGG - chr1.2:11382089-11382108 None:intergenic 35.0%
CGACATAAAATGTTCTCACA+GGG + chr1.2:11383851-11383870 MS.gene059136:intron 35.0%
CTAGAACTCAAAAAACTGTC+TGG + chr1.2:11383358-11383377 MS.gene059136:CDS 35.0%
GAAAAAGGTAAGAGCTTATG+TGG - chr1.2:11382043-11382062 None:intergenic 35.0%
GAATCTCTAACCACAATAGA+AGG - chr1.2:11381201-11381220 None:intergenic 35.0%
GAATGAAGCTGTTATGTGAT+GGG + chr1.2:11382108-11382127 MS.gene059136:intron 35.0%
GATAGATGTTTATGGATTCC+AGG + chr1.2:11380604-11380623 MS.gene059136:CDS 35.0%
GATATGTTGGAAAACCACTA+GGG - chr1.2:11380813-11380832 None:intergenic 35.0%
GATTAAAAGAGGAGACATCA+AGG + chr1.2:11383417-11383436 MS.gene059136:CDS 35.0%
GCAAGAAAACAATCTCATGA+TGG + chr1.2:11383139-11383158 MS.gene059136:intron 35.0%
TAATGCTTGGCAATACAGAA+CGG + chr1.2:11383305-11383324 MS.gene059136:CDS 35.0%
TAATTTCATGTAGTGGCTAC+AGG + chr1.2:11381743-11381762 MS.gene059136:intron 35.0%
TCATGATGCGATTGTGATTA+AGG - chr1.2:11382241-11382260 None:intergenic 35.0%
TCGACATAAAATGTTCTCAC+AGG + chr1.2:11383850-11383869 MS.gene059136:intron 35.0%
TGCTACTATTGAATCATGAG+AGG - chr1.2:11382442-11382461 None:intergenic 35.0%
TGTGGCCATTAAGACTAATA+GGG - chr1.2:11383803-11383822 None:intergenic 35.0%
TTGATAGGCCTTAATTGTGT+TGG - chr1.2:11382006-11382025 None:intergenic 35.0%
TTTAAGTCTAGTCATGGTTG+AGG + chr1.2:11382159-11382178 MS.gene059136:intron 35.0%
TTTCACCTTTCCATCCATTA+GGG - chr1.2:11385184-11385203 None:intergenic 35.0%
! AGATTTTCAACACAAGGAGA+AGG - chr1.2:11382495-11382514 None:intergenic 35.0%
! ATGAGTTTGGTGGTAGTATT+AGG + chr1.2:11381061-11381080 MS.gene059136:CDS 35.0%
! ATGCTGGGAAAATCAACTTT+TGG + chr1.2:11383211-11383230 MS.gene059136:CDS 35.0%
! ATGTTACTACAACTGACTCA+AGG - chr1.2:11382817-11382836 None:intergenic 35.0%
! GATGTCTCCTCTTTTAATCT+TGG - chr1.2:11383416-11383435 None:intergenic 35.0%
! GATTTTCAACACAAGGAGAA+GGG - chr1.2:11382494-11382513 None:intergenic 35.0%
! GTTTAGAGGGAAGAAAGTTT+TGG + chr1.2:11381113-11381132 MS.gene059136:CDS 35.0%
! TCCTCTTTTAATCTTGGCAA+GGG - chr1.2:11383410-11383429 None:intergenic 35.0%
! TGCTGGGAAAATCAACTTTT+GGG + chr1.2:11383212-11383231 MS.gene059136:CDS 35.0%
! TTCAGGTATGGAAGTTTGTT+TGG + chr1.2:11381152-11381171 MS.gene059136:CDS 35.0%
! TTTTCACCTTTCCATCCATT+AGG - chr1.2:11385185-11385204 None:intergenic 35.0%
!! ATTGAAGGAGTTGATGAGTT+TGG + chr1.2:11381048-11381067 MS.gene059136:CDS 35.0%
!! GAATTTTGACGCCATCATAT+TGG + chr1.2:11384377-11384396 MS.gene059136:CDS 35.0%
!! GCCCAATTTGATTTTTCACA+CGG - chr1.2:11383062-11383081 None:intergenic 35.0%
!! TGTTGCTTTGTTGGATATGT+TGG - chr1.2:11380826-11380845 None:intergenic 35.0%
!! TTGAAAGCACCTAATGATCA+TGG - chr1.2:11383642-11383661 None:intergenic 35.0%
!! TTGATGCTACACTTGGTTTT+TGG + chr1.2:11380926-11380945 MS.gene059136:CDS 35.0%
!!! AAAGTTTTGGTTGTTGGATG+TGG + chr1.2:11381126-11381145 MS.gene059136:CDS 35.0%
!!! CCTTTCACTTTTTTGGTGTT+TGG + chr1.2:11382086-11382105 MS.gene059136:intron 35.0%
!!! GACAGTTTTTTGAGTTCTAG+AGG - chr1.2:11383358-11383377 None:intergenic 35.0%
AAAACTGTCTGGAAAGACAC+CGG + chr1.2:11383369-11383388 MS.gene059136:CDS 40.0%
ACTGTGTCATGGTTAATGCT+TGG + chr1.2:11383292-11383311 MS.gene059136:CDS 40.0%
ACTGTTATAGGCCGTAACAA+AGG + chr1.2:11383931-11383950 MS.gene059136:intron 40.0%
AGATAGATGGATAGGCTCAT+AGG - chr1.2:11385043-11385062 None:intergenic 40.0%
AGGAGGGAAAAAAAAGCAAC+TGG - chr1.2:11381910-11381929 None:intergenic 40.0%
ATAGGCCTTAATTGTGTTGG+TGG - chr1.2:11382003-11382022 None:intergenic 40.0%
ATCATGGGAAGGAAAAAGGA+GGG - chr1.2:11381926-11381945 None:intergenic 40.0%
ATGAAGACGAAGACGATCAT+AGG - chr1.2:11380752-11380771 None:intergenic 40.0%
CAAATTGGGCCAGATATTCT+GGG + chr1.2:11383072-11383091 MS.gene059136:intron 40.0%
CCACTAGGGAATTCCATTAA+AGG - chr1.2:11380799-11380818 None:intergenic 40.0%
CCTTTAATGGAATTCCCTAG+TGG + chr1.2:11380796-11380815 MS.gene059136:CDS 40.0%
CTGAAGATATTGAACGGTGT+TGG + chr1.2:11385273-11385292 MS.gene059136:CDS 40.0%
CTGTTATAGGCCGTAACAAA+GGG + chr1.2:11383932-11383951 MS.gene059136:intron 40.0%
GGAATGAAGCTGTTATGTGA+TGG + chr1.2:11382107-11382126 MS.gene059136:intron 40.0%
GGAGGGAAAAAAAAGCAACT+GGG - chr1.2:11381909-11381928 None:intergenic 40.0%
GGATATGTTGGAAAACCACT+AGG - chr1.2:11380814-11380833 None:intergenic 40.0%
GTGTGGCCATTAAGACTAAT+AGG - chr1.2:11383804-11383823 None:intergenic 40.0%
GTTGCGAGAATCGTTAGATT+TGG + chr1.2:11381318-11381337 MS.gene059136:intron 40.0%
GTTGTTGGATGTGGAAATTC+AGG + chr1.2:11381135-11381154 MS.gene059136:CDS 40.0%
TAACCACTTTAGCAACCACA+TGG - chr1.2:11383242-11383261 None:intergenic 40.0%
TAGCATCAGAGCATATGGTT+TGG + chr1.2:11382457-11382476 MS.gene059136:intron 40.0%
TAGTGAAACCAACAGCAAAG+AGG - chr1.2:11385211-11385230 None:intergenic 40.0%
TCAAATTGGGCCAGATATTC+TGG + chr1.2:11383071-11383090 MS.gene059136:intron 40.0%
TCATCAACTCCTTCAATCTC+CGG - chr1.2:11381045-11381064 None:intergenic 40.0%
TGCAAAGAAACATCATGGGA+AGG - chr1.2:11381937-11381956 None:intergenic 40.0%
TGGATGTGGAAATTCAGGTA+TGG + chr1.2:11381140-11381159 MS.gene059136:CDS 40.0%
TGTTATAGGCCGTAACAAAG+GGG + chr1.2:11383933-11383952 MS.gene059136:intron 40.0%
TGTTGACATTGTGTCAACAG+TGG + chr1.2:11382544-11382563 MS.gene059136:intron 40.0%
TTAACCATGACACAGTGAGA+AGG - chr1.2:11383288-11383307 None:intergenic 40.0%
! AGAGCATATGGTTTGGCTAA+AGG + chr1.2:11382464-11382483 MS.gene059136:intron 40.0%
! ATTCCAGGTCCATTGATAGT+AGG + chr1.2:11380619-11380638 MS.gene059136:CDS 40.0%
! CTCCTCTTTTAATCTTGGCA+AGG - chr1.2:11383411-11383430 None:intergenic 40.0%
! GATTTTCCCAGCATATCTCT+TGG - chr1.2:11383205-11383224 None:intergenic 40.0%
! GGATAAGGGTATGTTCTCTA+AGG + chr1.2:11385133-11385152 MS.gene059136:intron 40.0%
! GGTATGTTCTCTAAGGAAGA+TGG + chr1.2:11385140-11385159 MS.gene059136:CDS 40.0%
! TGGTTACCGAGTTTGTTTGT+CGG + chr1.2:11380977-11380996 MS.gene059136:CDS 40.0%
! TTCACTAAACGTGGACTACT+TGG + chr1.2:11385224-11385243 MS.gene059136:CDS 40.0%
!! ATGCTACACTTGGTTTTTGG+AGG + chr1.2:11380929-11380948 MS.gene059136:CDS 40.0%
!! CATCGGTTCTATTTCCGAAA+CGG - chr1.2:11381286-11381305 None:intergenic 40.0%
!! GGAAGCTCACAAACTTGTTT+TGG - chr1.2:11380778-11380797 None:intergenic 40.0%
!! TACACAGTGGAATTTGCTGA+TGG + chr1.2:11384345-11384364 MS.gene059136:CDS 40.0%
!! TGCTACACTTGGTTTTTGGA+GGG + chr1.2:11380930-11380949 MS.gene059136:CDS 40.0%
!!! GGGAAGAAAGTTTTGGTTGT+TGG + chr1.2:11381120-11381139 MS.gene059136:CDS 40.0%
AAGGTAAGAGCTTATGTGGG+AGG - chr1.2:11382039-11382058 None:intergenic 45.0%
ACATCCTTCTCACTGTGTCA+TGG + chr1.2:11383281-11383300 MS.gene059136:CDS 45.0%
ACGCCATCATATTGGCAACT+GGG + chr1.2:11384385-11384404 MS.gene059136:CDS 45.0%
ACTATATACTCCCTCCGTCA+CGG + chr1.2:11382867-11382886 MS.gene059136:intron 45.0%
ACTTAGTTGTGGAGATGCTG+TGG - chr1.2:11382139-11382158 None:intergenic 45.0%
ATCCTGCCAAGAGATATGCT+GGG + chr1.2:11383196-11383215 MS.gene059136:CDS 45.0%
ATGGGTCAGATATTCCGTGA+CGG - chr1.2:11382884-11382903 None:intergenic 45.0%
ATGTAATCCACCAGTTGCAC+GGG - chr1.2:11383265-11383284 None:intergenic 45.0%
ATTCTCAAGCATGCCTAGCA+TGG + chr1.2:11381871-11381890 MS.gene059136:intron 45.0%
CAACCACCGACAAACAAACT+CGG - chr1.2:11380986-11381005 None:intergenic 45.0%
CATCATGGGAAGGAAAAAGG+AGG - chr1.2:11381927-11381946 None:intergenic 45.0%
CATGGCCACCAACACAATTA+AGG + chr1.2:11381995-11382014 MS.gene059136:intron 45.0%
CATTAGGGAATGGCTTCCTA+GGG - chr1.2:11385169-11385188 None:intergenic 45.0%
CCTTTCCATCCATTAGGGAA+TGG - chr1.2:11385179-11385198 None:intergenic 45.0%
CTAAGGAAGATGGATACCCT+AGG + chr1.2:11385150-11385169 MS.gene059136:CDS 45.0%
CTTGGCAATACAGAACGGTT+CGG + chr1.2:11383310-11383329 MS.gene059136:CDS 45.0%
GAGGTTAAAACGCTACACAG+TGG + chr1.2:11384332-11384351 MS.gene059136:CDS 45.0%
GATGTAATCCACCAGTTGCA+CGG - chr1.2:11383266-11383285 None:intergenic 45.0%
GCCCTTGCCAAGATTAAAAG+AGG + chr1.2:11383406-11383425 MS.gene059136:CDS 45.0%
GCTGAGTTTGATGCTACACT+TGG + chr1.2:11380919-11380938 MS.gene059136:CDS 45.0%
GGATAGGCTCATAGGAAGAT+AGG - chr1.2:11385035-11385054 None:intergenic 45.0%
GTACCCAGTTGCCAATATGA+TGG - chr1.2:11384391-11384410 None:intergenic 45.0%
GTCATCTTCTATCCCATGCT+AGG - chr1.2:11381887-11381906 None:intergenic 45.0%
TGATGCTGCTCCTTCTATTG+TGG + chr1.2:11381188-11381207 MS.gene059136:CDS 45.0%
TGTCCATGTGGTTGCTAAAG+TGG + chr1.2:11383236-11383255 MS.gene059136:CDS 45.0%
TTCTCAAGCATGCCTAGCAT+GGG + chr1.2:11381872-11381891 MS.gene059136:intron 45.0%
! AACAGTGGTGCTAACGACAT+AGG + chr1.2:11382559-11382578 MS.gene059136:intron 45.0%
! ACGGAGGGAGTATATAGTAG+AGG - chr1.2:11382865-11382884 None:intergenic 45.0%
! CCATTCCCTAATGGATGGAA+AGG + chr1.2:11385176-11385195 MS.gene059136:CDS 45.0%
! GAAAATGGCCTCTTTGCTGT+TGG + chr1.2:11385200-11385219 MS.gene059136:CDS 45.0%
! GAGGGAGTATATAGTAGAGG+AGG - chr1.2:11382862-11382881 None:intergenic 45.0%
! GCATATGGTTTGGCTAAAGG+TGG + chr1.2:11382467-11382486 MS.gene059136:intron 45.0%
! TGAACGGTGTTGGAAAGTTG+AGG + chr1.2:11385283-11385302 MS.gene059136:CDS 45.0%
! TTACCGAGTTTGTTTGTCGG+TGG + chr1.2:11380980-11380999 MS.gene059136:CDS 45.0%
!! CAATACAGAACGGTTCGGTT+TGG + chr1.2:11383315-11383334 MS.gene059136:CDS 45.0%
!! CGTTTTAACCTCTTGATGCC+TGG - chr1.2:11384324-11384343 None:intergenic 45.0%
!! GAAGGAGTTGATGAGTTTGG+TGG + chr1.2:11381051-11381070 MS.gene059136:CDS 45.0%
!! GCTGTTGGTTTCACTAAACG+TGG + chr1.2:11385215-11385234 MS.gene059136:CDS 45.0%
!!! CAACTTTTGGGTTGTCCATG+TGG + chr1.2:11383224-11383243 MS.gene059136:CDS 45.0%
AAAGACACCGGTCCTAGATG+TGG + chr1.2:11383381-11383400 MS.gene059136:CDS 50.0%
AAAGTGGTTACCCGTGCAAC+TGG + chr1.2:11383252-11383271 MS.gene059136:CDS 50.0%
AAGACACCGGTCCTAGATGT+GGG + chr1.2:11383382-11383401 MS.gene059136:CDS 50.0%
ATAGTAGGAGCAGGACCTTC+AGG + chr1.2:11380634-11380653 MS.gene059136:CDS 50.0%
CATCCTGCCAAGAGATATGC+TGG + chr1.2:11383195-11383214 MS.gene059136:CDS 50.0%
CCATTAGGGAATGGCTTCCT+AGG - chr1.2:11385170-11385189 None:intergenic 50.0%
CCTAGGAAGCCATTCCCTAA+TGG + chr1.2:11385167-11385186 MS.gene059136:CDS 50.0%
CGCATCATGATCGTCGTTGT+TGG + chr1.2:11382251-11382270 MS.gene059136:intron 50.0%
GACGCCATCATATTGGCAAC+TGG + chr1.2:11384384-11384403 MS.gene059136:CDS 50.0%
GCAACTGCTGCATTGTGCAT+CGG - chr1.2:11381303-11381322 None:intergenic 50.0%
GCTCCTACTATCAATGGACC+TGG - chr1.2:11380625-11380644 None:intergenic 50.0%
GGAAGCCATTCCCTAATGGA+TGG + chr1.2:11385171-11385190 MS.gene059136:CDS 50.0%
GGTCCTGCTCCTACTATCAA+TGG - chr1.2:11380631-11380650 None:intergenic 50.0%
GTACCTGAACGAAGGAGCTA+TGG - chr1.2:11384299-11384318 None:intergenic 50.0%
TCCCTCTGTCCCAGAATATC+TGG - chr1.2:11383084-11383103 None:intergenic 50.0%
TCTCCATAGCTCCTTCGTTC+AGG + chr1.2:11384293-11384312 MS.gene059136:intron 50.0%
TTCCCAGCATATCTCTTGGC+AGG - chr1.2:11383201-11383220 None:intergenic 50.0%
! AGTGGTGCTAACGACATAGG+TGG + chr1.2:11382562-11382581 MS.gene059136:intron 50.0%
! GAGCTTATGTGGGAGGCTTT+TGG - chr1.2:11382032-11382051 None:intergenic 50.0%
! GGTCCATTGATAGTAGGAGC+AGG + chr1.2:11380625-11380644 MS.gene059136:CDS 50.0%
! GTCAGATATTCCGTGACGGA+GGG - chr1.2:11382880-11382899 None:intergenic 50.0%
! GTGGTGCTAACGACATAGGT+GGG + chr1.2:11382563-11382582 MS.gene059136:intron 50.0%
! TGGTGCTAACGACATAGGTG+GGG + chr1.2:11382564-11382583 MS.gene059136:intron 50.0%
!! CACTTGGTTTTTGGAGGGTG+AGG + chr1.2:11380935-11380954 MS.gene059136:CDS 50.0%
!! CAGAACGGTTCGGTTTGGTT+CGG + chr1.2:11383320-11383339 MS.gene059136:CDS 50.0%
!! GCCAGATATTCTGGGACAGA+GGG + chr1.2:11383080-11383099 MS.gene059136:intron 50.0%
!! TGGACTACTTGGTGCATCCA+TGG + chr1.2:11385235-11385254 MS.gene059136:CDS 50.0%
!! TTTTGGAGGGTGAGGAGTGA+GGG + chr1.2:11380943-11380962 MS.gene059136:CDS 50.0%
!! TTTTTGGAGGGTGAGGAGTG+AGG + chr1.2:11380942-11380961 MS.gene059136:CDS 50.0%
AACCGCCTCAGCATTCTCTC+CGG - chr1.2:11381019-11381038 None:intergenic 55.0%
AACCGGAGAGAATGCTGAGG+CGG + chr1.2:11381014-11381033 MS.gene059136:CDS 55.0%
AGGTACGTCCAGGCATCAAG+AGG + chr1.2:11384313-11384332 MS.gene059136:intron 55.0%
CGGTGGTTGATCGTTGCAAC+CGG + chr1.2:11380997-11381016 MS.gene059136:CDS 55.0%
GCTGCTACTGCTAGTCCTGA+AGG - chr1.2:11380652-11380671 None:intergenic 55.0%
GGTCAGATATTCCGTGACGG+AGG - chr1.2:11382881-11382900 None:intergenic 55.0%
GGTGCTAACGACATAGGTGG+GGG + chr1.2:11382565-11382584 MS.gene059136:intron 55.0%
TCCTTCGTTCAGGTACGTCC+AGG + chr1.2:11384303-11384322 MS.gene059136:intron 55.0%
TGCAACCGGAGAGAATGCTG+AGG + chr1.2:11381011-11381030 MS.gene059136:CDS 55.0%
TTTGGAGGGTGAGGAGTGAG+GGG + chr1.2:11380944-11380963 MS.gene059136:CDS 55.0%
! GGAGGCTTTTGGCCCTTGAT+AGG - chr1.2:11382021-11382040 None:intergenic 55.0%
!! AGTTCTAGAGGACCCAACCG+AGG - chr1.2:11383346-11383365 None:intergenic 55.0%
!! GGCCAGATATTCTGGGACAG+AGG + chr1.2:11383079-11383098 MS.gene059136:intron 55.0%
GAATGCTGAGGCGGTTGTGC+CGG + chr1.2:11381023-11381042 MS.gene059136:CDS 60.0%
GCCTGGACGTACCTGAACGA+AGG - chr1.2:11384307-11384326 None:intergenic 60.0%
GCGGTTGTGCCGGAGATTGA+AGG + chr1.2:11381033-11381052 MS.gene059136:CDS 60.0%
GTGGTTACCCGTGCAACTGG+TGG + chr1.2:11383255-11383274 MS.gene059136:CDS 60.0%
! AGGGCACCCACATCTAGGAC+CGG - chr1.2:11383391-11383410 None:intergenic 60.0%
! CGTTTTCCGCAGCTGCTGCA+GGG + chr1.2:11381371-11381390 MS.gene059136:intron 60.0%
! TCGTTTTCCGCAGCTGCTGC+AGG + chr1.2:11381370-11381389 MS.gene059136:intron 60.0%
!! GGTTCGGTTTGGTTCGGCCT+CGG + chr1.2:11383326-11383345 MS.gene059136:CDS 60.0%
!! GGTTTGGTTCGGCCTCGGTT+GGG + chr1.2:11383331-11383350 MS.gene059136:CDS 60.0%
!! TGGCAAGGGCACCCACATCT+AGG - chr1.2:11383396-11383415 None:intergenic 60.0%
CTACAGCCCTGCAGCAGCTG+CGG - chr1.2:11381380-11381399 None:intergenic 65.0%
GAGGGTGAGGAGTGAGGGGA+AGG + chr1.2:11380948-11380967 MS.gene059136:CDS 65.0%
GAGTGAGGGGAAGGCGGGAA+TGG + chr1.2:11380957-11380976 MS.gene059136:CDS 65.0%
GGTGAGGAGTGAGGGGAAGG+CGG + chr1.2:11380951-11380970 MS.gene059136:CDS 65.0%
GTGAGGAGTGAGGGGAAGGC+GGG + chr1.2:11380952-11380971 MS.gene059136:CDS 65.0%
!! CGGTTTGGTTCGGCCTCGGT+TGG + chr1.2:11383330-11383349 MS.gene059136:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 11380502 11385337 11380502 ID=MS.gene059136
chr1.2 mRNA 11380502 11385337 11380502 ID=MS.gene059136.t1;Parent=MS.gene059136
chr1.2 exon 11380502 11381221 11380502 ID=MS.gene059136.t1.exon1;Parent=MS.gene059136.t1
chr1.2 CDS 11380502 11381221 11380502 ID=cds.MS.gene059136.t1;Parent=MS.gene059136.t1
chr1.2 exon 11383190 11383438 11383190 ID=MS.gene059136.t1.exon2;Parent=MS.gene059136.t1
chr1.2 CDS 11383190 11383438 11383190 ID=cds.MS.gene059136.t1;Parent=MS.gene059136.t1
chr1.2 exon 11384315 11384437 11384315 ID=MS.gene059136.t1.exon3;Parent=MS.gene059136.t1
chr1.2 CDS 11384315 11384437 11384315 ID=cds.MS.gene059136.t1;Parent=MS.gene059136.t1
chr1.2 exon 11385134 11385337 11385134 ID=MS.gene059136.t1.exon4;Parent=MS.gene059136.t1
chr1.2 CDS 11385134 11385337 11385134 ID=cds.MS.gene059136.t1;Parent=MS.gene059136.t1
Gene Sequence

>MS.gene059136

ATGGACAGTTATCTAAGAGAATTAGAAGGAAAACAAGCACATGATCCTTTATTCATGGAAAAAATGATCAACAACAAGAACAAGAATTCAACTTCTTCAAGTGATAGATGTTTATGGATTCCAGGTCCATTGATAGTAGGAGCAGGACCTTCAGGACTAGCAGTAGCAGCATATCTAAAACAAAAAGGTGTTCCAAGTTTAATACTAGAAAGATCAAATTGTATAGCTTCACTATGGAAGCTAAAAACCTATGATCGTCTTCGTCTTCATTTACCAAAACAAGTTTGTGAGCTTCCTTTAATGGAATTCCCTAGTGGTTTTCCAACATATCCAACAAAGCAACAATTCATAGAGTATTTGGAAAGTTATTCCAAAAATTTCGATATTAGGCCTTGGTTCAATGAGACAGTTATGCATGCTGAGTTTGATGCTACACTTGGTTTTTGGAGGGTGAGGAGTGAGGGGAAGGCGGGAATGGTTACCGAGTTTGTTTGTCGGTGGTTGATCGTTGCAACCGGAGAGAATGCTGAGGCGGTTGTGCCGGAGATTGAAGGAGTTGATGAGTTTGGTGGTAGTATTAGGCATACTAGTTTGTATAAAAGTGGTGAAGAGTTTAGAGGGAAGAAAGTTTTGGTTGTTGGATGTGGAAATTCAGGTATGGAAGTTTGTTTGGATCTTTGTAATCATGATGCTGCTCCTTCTATTGTGGTTAGAGATTCAGTAAGTACTCACAAATCTTTCTCCTTTTACTTTGTTTTTCTTTCTTTCTTTTTTAACTTTTCCGTTTCGGAAATAGAACCGATGCACAATGCAGCAGTTGCGAGAATCGTTAGATTTGGAGAAGAATTTTTTTCTATCGCTAAATCTATCGTTTTCCGCAGCTGCTGCAGGGCTGTAGTGTGCCTATGATTATGAAAATCAGCATGTACTAAAAATACTATAAAGTTGTTTTTATTTTTGGTTAAAAGTTTTTACAACCTCCCTGTTTTTATTCAAAACATACTATATATGTTTACATAAACATAAAATATTTAAAGTTCCTTGTAGCATAAAATTCAATATTAGTAACTTCTATCTCCTAATTAAGAAACATGGAAATTTGTCGGGTTCCTTCTTAAAAAAAATTAGTTACAGTACTAAATAGATTATGATGTTGTGAGACAAAATATGCAAGTAAAATTCACCTTCAAAGTTGTGTTTTGTTTTTTCTAATATAGCATATAAAATAGGCAAAGTATTCATAATTTCATGTAGTGGCTACAGGTACAATGAATTGTTAATTTAGATCCATTTCAAAAGTATTTTTGAATATTTCATTTTTTTTTTAGCACTAGTATTATAAAAAGCATGATATTTCACTTTTTTTGGGATTCTCAAGCATGCCTAGCATGGGATAGAAGATGACCCAGTTGCTTTTTTTTCCCTCCTTTTTCCTTCCCATGATGTTTCTTTGCAAAAGAGATACTCTTTCCCTTGTATTATTACAAGTAGAGCATGGCCACCAACACAATTAAGGCCTATCAAGGGCCAAAAGCCTCCCACATAAGCTCTTACCTTTTTCTCTTTTTTGTTTTTTTGTTTTTTCCTTTCACTTTTTTGGTGTTTGGAATGAAGCTGTTATGTGATGGGAAACACCACAGCATCTCCACAACTAAGTTTTAAGTCTAGTCATGGTTGAGGTGACATCGCTTCCTTAATAATATGAAAAATAGCACTTAAATTATGGCGGAATGTGACCTTAATCACAATCGCATCATGATCGTCGTTGTTGGTATTTCAAGTGTGAATAAGAGTCTCACATTGAATGAAAAAGTAGATGTTGAGCAACATGTAAATGAGATGACTCATATCTAACACTTAAAGATTTTGGGTGAAGATATGGTGTTAAAACTCGCTTGTATGATTGTTCAAACTCTAAAGTGATGAACTTCTAAACTCCTCTCATGATTCAATAGTAGCATCAGAGCATATGGTTTGGCTAAAGGTGGACCCTTCTCCTTGTGTTGAAAATCTTTATGATAATGGTCGTCAGAATGTGTGCTTGTTGACATTGTGTCAACAGTGGTGCTAACGACATAGGTGGGGGATACGTAGATGAAAGATCAACTCACGCTTGATAGAGAGATTATTGATATTTCAAACATTATAAAATATTTACATTGGATAAAAAAATGAATGTCGAGCAATACTACAATGAAATAACTTATATACCTAAGATCTTAAGATTTTTGATAAAAATATTGTGCAAATTCATGTGTGTGGTTGCTTAAATTCACTTGATATTGTAACTTCAATAAACGAAATTCAAATTTCCTTGAGTCAGTTGTAGTAACATCACTTAATGTTAATAGTAATTTCCTCCTCTACTATATACTCCCTCCGTCACGGAATATCTGACCCATTTACTAAAAAAAAGTGTCCCAAAATAACTGACTCATTTCACTTTTCAATACAACTTTCATCATTCCCAATATAATATAACTCTAATTAATACTACTTTCATCATTCCCAATACAATATATTCCACTTTCCCCTTTATTTATACATTTTTCTTAATCCGTGTGAAAAATCAAATTGGGCCAGATATTCTGGGACAGAGGGAGTACTTTTTCATAGAAAAAGGTATACTCAAATTATGCAAGAAAACAATCTCATGATGGTACTTTTTCTCTATTGGTTTGATTGAAGGTACACATCCTGCCAAGAGATATGCTGGGAAAATCAACTTTTGGGTTGTCCATGTGGTTGCTAAAGTGGTTACCCGTGCAACTGGTGGATTACATCCTTCTCACTGTGTCATGGTTAATGCTTGGCAATACAGAACGGTTCGGTTTGGTTCGGCCTCGGTTGGGTCCTCTAGAACTCAAAAAACTGTCTGGAAAGACACCGGTCCTAGATGTGGGTGCCCTTGCCAAGATTAAAAGAGGAGACATCAAGGTACTTTCTATCAAATCAAATTCAACTTTTTTAAATCCTTAAGATTTTAGTGTCACTTTGAGTCTAAAAAATAGATTTTGTGTCACCCCAGAAATAAGTTTATTTGGACGCCTTTTCTTTTTAGTCATAGAATATTTTTAACTAATGAAAGTACTTCTGTATATTTTGTTTTCACCTTTCTTTCTTGTTTGAAAGATTTTCCATGATCATTAGGTGCTTTCAATCAAATCATACTTTATTAAGGCTCATAATCTGAGTTTACTTTCAATATAGTGTAAACGTGAAACATTTTATATTATTAAACAAAACAGTCATAATCAAGTGTATATTGACTTTTAACATAGTTATACTTTTTTTATTTCCCTATTAGTCTTAATGGCCACACATATTGAAGTAAATTCACACAAAGATTCGACATAAAATGTTCTCACAGGGATATTCGACATTAGTTTTAAATAAGGATTCGGCATAAAATGTTCTCACAATCAAACAACTGTTATAGGCCGTAACAAAGGGGACATAAAATTATAATTAATTAGTCAAAAATTTATTAATTATTTTTTACTAATAAATTGACGGTTATAATTAATTGATAATGTAAAATATTTTACACTAATTATAACTACACGTGGTAATTAAATCTTTTGTAGGAATTTCACAAAAGTTAATAGACAACGTCGTTATCATTGAAACTCACAATACTTCTTTTCTTTCTTCATATTTAGTGTGTAAGTTTTGCCGTTAAACTCTTGAAAATATTTAAAAGTAGCTAATAAATATAATATTTTATCACTGATTCTACATATTAATCATATCTTGAGTATAATTTATTTTTATCAAAATTGTTTGATTGATCTCCATAGCTCCTTCGTTCAGGTACGTCCAGGCATCAAGAGGTTAAAACGCTACACAGTGGAATTTGCTGATGGAAGTACAGAGAATTTTGACGCCATCATATTGGCAACTGGGTACAAAAGTAATGTACCCTATTGGTTAAAGGTGAGTTATAAATTATAATCCCATTATGCATTCTTTAATTTCTTTTTTTCTTCCAAACAATGAAAACGGCACCATTTGTTTTATCTTAGTTGACTTTAATAACTAATTAACTATGCACTAACGACATGTGAAAAAAGGTATACACTTGAGTTCAATCCGATCTCATCACGATATCATATTTGTAATATTATTTATTAATTAAATGCATGCACAAATATTCATTTTATAAAATATAATTAATTTGAATGTTTGCATGCAAAAAAAAAAATTATACGGTGATTCATCTTGATGAAAATATGTTTTTACTTGGTGTTATTTACTTCTACTTGCAAATTCTATCACTTTATTGTTTAAAATTTATTTTCTGTTTTCAAATGTTTATAATGAATCTGTCAAAAAAATATTTATAAACAAATAATGAGAACAATTTTTTTCACATATGAAGACACGAAAACTTTGAAAAAAGATTGGAAATTTTTGTACTTAGAATTGACAACAAAAAATCAAAACAAAAAACTTTTTATAATAACTAACATGTGCTAAAGCTTTTTTATTTCGAATAAGGAAAATACGGATATAGAATAATCTAAAGTACCTATCTTCCTATGAGCCTATCCATCTATCTGAATTTTGAAAATGATATAAAGCAAGAAAAAGAAACTAATAATACAAATAACTGAAATGGTATATGTGCAGGATAAGGGTATGTTCTCTAAGGAAGATGGATACCCTAGGAAGCCATTCCCTAATGGATGGAAAGGTGAAAATGGCCTCTTTGCTGTTGGTTTCACTAAACGTGGACTACTTGGTGCATCCATGGATGCAAAAAATATAGCTGAAGATATTGAACGGTGTTGGAAAGTTGAGGCAAAGCATATATTTCAACAATCAAATTCATGA
Protein sequence

>MS.gene059136.t1

MDSYLRELEGKQAHDPLFMEKMINNKNKNSTSSSDRCLWIPGPLIVGAGPSGLAVAAYLKQKGVPSLILERSNCIASLWKLKTYDRLRLHLPKQVCELPLMEFPSGFPTYPTKQQFIEYLESYSKNFDIRPWFNETVMHAEFDATLGFWRVRSEGKAGMVTEFVCRWLIVATGENAEAVVPEIEGVDEFGGSIRHTSLYKSGEEFRGKKVLVVGCGNSGMEVCLDLCNHDAAPSIVVRDSVHILPRDMLGKSTFGLSMWLLKWLPVQLVDYILLTVSWLMLGNTERFGLVRPRLGPLELKKLSGKTPVLDVGALAKIKRGDIKVRPGIKRLKRYTVEFADGSTENFDAIILATGYKSNVPYWLKDKGMFSKEDGYPRKPFPNGWKGENGLFAVGFTKRGLLGASMDAKNIAEDIERCWKVEAKHIFQQSNS