Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018590.t1 | XP_003625456.1 | 98.8 | 416 | 5 | 0 | 1 | 416 | 1 | 416 | 1.20E-242 | 848.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018590.t1 | Q9SVU0 | 75.1 | 425 | 95 | 4 | 1 | 415 | 1 | 424 | 1.0e-189 | 664.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018590.t1 | G7KZI9 | 98.8 | 416 | 5 | 0 | 1 | 416 | 1 | 416 | 8.9e-243 | 848.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064542 | MS.gene018590 | PPI |
| MS.gene018590 | MS.gene013322 | PPI |
| MS.gene018590 | MS.gene60245 | PPI |
| MS.gene049295 | MS.gene018590 | PPI |
| MS.gene51580 | MS.gene018590 | PPI |
| MS.gene57685 | MS.gene018590 | PPI |
| MS.gene019484 | MS.gene018590 | PPI |
| MS.gene027681 | MS.gene018590 | PPI |
| MS.gene61665 | MS.gene018590 | PPI |
| MS.gene29205 | MS.gene018590 | PPI |
| MS.gene035805 | MS.gene018590 | PPI |
| MS.gene31616 | MS.gene018590 | PPI |
| MS.gene015953 | MS.gene018590 | PPI |
| MS.gene018590 | MS.gene064951 | PPI |
| MS.gene018590 | MS.gene44331 | PPI |
| MS.gene018590 | MS.gene86173 | PPI |
| MS.gene018590 | MS.gene32792 | PPI |
| MS.gene018590 | MS.gene059136 | PPI |
| MS.gene018590 | MS.gene40340 | PPI |
| MS.gene031178 | MS.gene018590 | PPI |
| MS.gene018590 | MS.gene06418 | PPI |
| MS.gene018590 | MS.gene021474 | PPI |
| MS.gene018590 | MS.gene44332 | PPI |
| MS.gene018590 | MS.gene53594 | PPI |
| MS.gene018590 | MS.gene014685 | PPI |
| MS.gene64265 | MS.gene018590 | PPI |
| MS.gene36879 | MS.gene018590 | PPI |
| MS.gene018590 | MS.gene73119 | PPI |
| MS.gene018590 | MS.gene054944 | PPI |
| MS.gene56048 | MS.gene018590 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018590.t1 | MTR_7g099330 | 98.798 | 416 | 5 | 0 | 1 | 416 | 1 | 416 | 0.0 | 852 |
| MS.gene018590.t1 | MTR_1g069275 | 78.436 | 422 | 84 | 4 | 1 | 416 | 1 | 421 | 0.0 | 687 |
| MS.gene018590.t1 | MTR_7g099160 | 97.231 | 325 | 9 | 0 | 92 | 416 | 213 | 537 | 0.0 | 657 |
| MS.gene018590.t1 | MTR_1g046230 | 72.642 | 424 | 107 | 2 | 1 | 416 | 1 | 423 | 0.0 | 637 |
| MS.gene018590.t1 | MTR_1g011630 | 58.268 | 381 | 156 | 2 | 17 | 395 | 9 | 388 | 5.10e-176 | 497 |
| MS.gene018590.t1 | MTR_1g008380 | 58.974 | 390 | 153 | 3 | 17 | 400 | 35 | 423 | 1.23e-173 | 492 |
| MS.gene018590.t1 | MTR_3g109520 | 59.536 | 388 | 149 | 3 | 19 | 399 | 34 | 420 | 9.19e-171 | 484 |
| MS.gene018590.t1 | MTR_6g086870 | 56.391 | 399 | 160 | 5 | 9 | 395 | 4 | 400 | 1.72e-167 | 476 |
| MS.gene018590.t1 | MTR_7g107710 | 45.953 | 383 | 195 | 4 | 25 | 400 | 7 | 384 | 7.49e-120 | 353 |
| MS.gene018590.t1 | MTR_7g107690 | 42.480 | 379 | 206 | 4 | 25 | 396 | 9 | 382 | 3.64e-114 | 339 |
| MS.gene018590.t1 | MTR_5g033260 | 45.093 | 377 | 195 | 4 | 25 | 394 | 7 | 378 | 1.07e-113 | 338 |
| MS.gene018590.t1 | MTR_8g432640 | 45.067 | 375 | 194 | 3 | 25 | 392 | 7 | 376 | 1.92e-112 | 335 |
| MS.gene018590.t1 | MTR_3g088955 | 43.850 | 374 | 196 | 4 | 25 | 390 | 8 | 375 | 2.88e-112 | 335 |
| MS.gene018590.t1 | MTR_3g088925 | 43.432 | 373 | 199 | 3 | 25 | 390 | 8 | 375 | 1.33e-111 | 333 |
| MS.gene018590.t1 | MTR_3g088945 | 43.164 | 373 | 200 | 3 | 25 | 390 | 8 | 375 | 5.72e-111 | 331 |
| MS.gene018590.t1 | MTR_4g051642 | 43.968 | 373 | 196 | 5 | 25 | 390 | 8 | 374 | 9.23e-109 | 326 |
| MS.gene018590.t1 | MTR_3g096030 | 38.068 | 176 | 79 | 2 | 25 | 194 | 7 | 158 | 6.27e-36 | 129 |
| MS.gene018590.t1 | MTR_3g437580 | 23.140 | 242 | 139 | 6 | 26 | 228 | 15 | 248 | 2.06e-11 | 65.5 |
| MS.gene018590.t1 | MTR_3g437580 | 23.140 | 242 | 139 | 6 | 26 | 228 | 15 | 248 | 3.28e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018590.t1 | AT4G28720 | 75.059 | 425 | 95 | 4 | 1 | 415 | 1 | 424 | 0.0 | 672 |
| MS.gene018590.t1 | AT5G43890 | 72.813 | 423 | 105 | 4 | 1 | 414 | 1 | 422 | 0.0 | 644 |
| MS.gene018590.t1 | AT1G04180 | 72.381 | 420 | 109 | 4 | 1 | 414 | 1 | 419 | 0.0 | 637 |
| MS.gene018590.t1 | AT1G04610 | 68.019 | 419 | 124 | 2 | 7 | 416 | 20 | 437 | 0.0 | 603 |
| MS.gene018590.t1 | AT2G33230 | 66.667 | 423 | 130 | 3 | 3 | 416 | 11 | 431 | 0.0 | 569 |
| MS.gene018590.t1 | AT5G25620 | 60.199 | 402 | 151 | 5 | 9 | 402 | 16 | 416 | 5.40e-178 | 503 |
| MS.gene018590.t1 | AT5G25620 | 60.150 | 399 | 150 | 5 | 9 | 399 | 16 | 413 | 6.02e-177 | 501 |
| MS.gene018590.t1 | AT5G11320 | 58.438 | 397 | 159 | 2 | 19 | 415 | 12 | 402 | 4.79e-173 | 490 |
| MS.gene018590.t1 | AT4G32540 | 56.589 | 387 | 165 | 3 | 15 | 399 | 12 | 397 | 1.32e-167 | 476 |
| MS.gene018590.t1 | AT4G32540 | 56.041 | 389 | 166 | 4 | 15 | 399 | 12 | 399 | 7.44e-166 | 472 |
| MS.gene018590.t1 | AT4G13260 | 57.218 | 381 | 155 | 3 | 17 | 390 | 21 | 400 | 3.43e-162 | 462 |
| MS.gene018590.t1 | AT5G11320 | 59.752 | 323 | 129 | 1 | 19 | 341 | 12 | 333 | 1.62e-144 | 416 |
| MS.gene018590.t1 | AT4G13260 | 56.897 | 290 | 119 | 1 | 17 | 300 | 21 | 310 | 4.34e-125 | 364 |
| MS.gene018590.t1 | AT1G48910 | 45.308 | 373 | 192 | 4 | 25 | 390 | 6 | 373 | 3.92e-119 | 352 |
| MS.gene018590.t1 | AT1G21430 | 47.467 | 375 | 180 | 7 | 25 | 390 | 10 | 376 | 4.73e-117 | 347 |
| MS.gene018590.t1 | AT4G13260 | 56.207 | 290 | 119 | 3 | 108 | 390 | 9 | 297 | 4.00e-110 | 326 |
| MS.gene018590.t1 | AT1G65860 | 26.201 | 229 | 129 | 7 | 26 | 222 | 15 | 235 | 5.85e-15 | 77.0 |
| MS.gene018590.t1 | AT5G07800 | 25.346 | 217 | 122 | 5 | 26 | 202 | 18 | 234 | 8.77e-13 | 70.1 |
| MS.gene018590.t1 | AT5G45180 | 25.501 | 349 | 197 | 12 | 25 | 332 | 14 | 340 | 5.87e-12 | 67.8 |
Find 93 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAAAGTCCTTCAATTTC+AGG | 0.167964 | 7.4:+11218670 | None:intergenic |
| TTCTCTCACGCCGTTGCATT+TGG | 0.196198 | 7.4:-11219101 | MS.gene018590:CDS |
| GTTAAAATTGCACAAGATAT+TGG | 0.210104 | 7.4:-11217583 | MS.gene018590:CDS |
| TGTTTCTTTGAAGGGTATTC+AGG | 0.234534 | 7.4:+11218874 | None:intergenic |
| CCATGTGGAAATGGCATCTT+TGG | 0.241543 | 7.4:+11217679 | None:intergenic |
| TTCACAAAGAGAGGGCTTTC+TGG | 0.253444 | 7.4:-11217622 | MS.gene018590:CDS |
| CAATGTCCCTTCTTGGCTTC+AGG | 0.262510 | 7.4:-11218026 | MS.gene018590:intron |
| CACAAGATATTGGAAAAGTT+TGG | 0.264533 | 7.4:-11217573 | MS.gene018590:CDS |
| GTTGTTGGATGTGGAAATTC+TGG | 0.276886 | 7.4:-11218577 | MS.gene018590:CDS |
| ACCGCAGCAATGTCCCTTCT+TGG | 0.278978 | 7.4:-11218033 | MS.gene018590:CDS |
| GTGCTACCTAGAGAAATATT+TGG | 0.304479 | 7.4:-11218373 | MS.gene018590:CDS |
| GGTAGTTGACAGAATTGTTT+TGG | 0.312145 | 7.4:+11218922 | None:intergenic |
| TCTCTCACGCCGTTGCATTT+GGG | 0.312281 | 7.4:-11219100 | MS.gene018590:CDS |
| AGAAGGAAAGACACCGGTTT+TGG | 0.315038 | 7.4:-11218194 | MS.gene018590:CDS |
| GGTGAAGTTGAGCTTGTTAA+TGG | 0.336155 | 7.4:-11218097 | MS.gene018590:CDS |
| CGCCGTTGCATTTGGGTCAA+TGG | 0.349348 | 7.4:-11219093 | MS.gene018590:CDS |
| CCCTTCCAACCATGTGGAAA+TGG | 0.354454 | 7.4:+11217670 | None:intergenic |
| GAACACACTCGTTGAATTGC+GGG | 0.355699 | 7.4:+11218806 | None:intergenic |
| CATGGTTGGAAGGGAAATTC+AGG | 0.364067 | 7.4:-11217661 | MS.gene018590:CDS |
| TATGCTTGTGATTACAAGTC+AGG | 0.381966 | 7.4:-11218628 | MS.gene018590:CDS |
| GGAAAGAAAGTTCTTGTTGT+TGG | 0.397099 | 7.4:-11218592 | MS.gene018590:CDS |
| GGGTATTCAGGGAAATCTTC+AGG | 0.406351 | 7.4:+11218886 | None:intergenic |
| CTTATGAATTGTTTCTTTGA+AGG | 0.406911 | 7.4:+11218865 | None:intergenic |
| TCTTCAGGCATTGGAAGGTT+AGG | 0.415876 | 7.4:+11218901 | None:intergenic |
| TCATCATGCTTTACCTTCCA+TGG | 0.420618 | 7.4:-11218527 | MS.gene018590:CDS |
| TGGTATCAAAAGGCCTTCAA+TGG | 0.420704 | 7.4:-11218239 | MS.gene018590:CDS |
| AAAGTTCTTGTTGTTGGATG+TGG | 0.420882 | 7.4:-11218586 | MS.gene018590:CDS |
| ATCATAGGTGCAGGTCCATC+TGG | 0.430455 | 7.4:-11219063 | MS.gene018590:CDS |
| AGGGACATTGCTGCGGTAAC+CGG | 0.431024 | 7.4:+11218039 | None:intergenic |
| ATCAAAAGGTTTAATAATCA+TGG | 0.435107 | 7.4:-11218118 | MS.gene018590:CDS |
| TTCCATGGTTGTTCGTAGCT+CGG | 0.440887 | 7.4:-11218512 | MS.gene018590:intron |
| ATGAAGTTGAGTACATTTGT+AGG | 0.449172 | 7.4:-11218735 | MS.gene018590:CDS |
| AACTTCAAAGGACCCATTGA+AGG | 0.449923 | 7.4:+11218226 | None:intergenic |
| TTATGAATTGTTTCTTTGAA+GGG | 0.463097 | 7.4:+11218866 | None:intergenic |
| CTGATTGCATAGCATCACTA+TGG | 0.465618 | 7.4:-11218981 | MS.gene018590:CDS |
| GTTTCTTTGAAGGGTATTCA+GGG | 0.466361 | 7.4:+11218875 | None:intergenic |
| TCAGGGAAATCTTCAGGCAT+TGG | 0.472081 | 7.4:+11218892 | None:intergenic |
| TGTTGAAGTGGTTACCACTT+TGG | 0.479523 | 7.4:-11218321 | MS.gene018590:CDS |
| GATATTCCAAATATTTCTCT+AGG | 0.498261 | 7.4:+11218367 | None:intergenic |
| TCTGTGTTCTTCAACTTCAA+AGG | 0.498901 | 7.4:+11218214 | None:intergenic |
| AGGTGGCTTGTTGTTGCTAC+CGG | 0.499132 | 7.4:-11218715 | MS.gene018590:CDS |
| GAAGGACTTTCTGAATTCAA+AGG | 0.499261 | 7.4:-11218661 | MS.gene018590:CDS |
| GCCATTTCCACATGGTTGGA+AGG | 0.503171 | 7.4:-11217671 | MS.gene018590:CDS |
| AGATGCCATTTCCACATGGT+TGG | 0.512278 | 7.4:-11217675 | MS.gene018590:CDS |
| GATGCAGTTGTTCTTGCTAC+CGG | 0.513400 | 7.4:-11218058 | MS.gene018590:CDS |
| AAAGCACCAATGTCCAAAAC+CGG | 0.515634 | 7.4:+11218181 | None:intergenic |
| GTCAATGGACCTGTGATCAT+AGG | 0.520464 | 7.4:-11219078 | MS.gene018590:CDS |
| CTTAACCCTCCACAATCCAC+TGG | 0.522153 | 7.4:+11218762 | None:intergenic |
| CATGTGGAAATGGCATCTTT+GGG | 0.531409 | 7.4:+11217680 | None:intergenic |
| AATTCAGGACTATATGCTGT+AGG | 0.534469 | 7.4:-11217646 | MS.gene018590:CDS |
| ATGCTTGTGATTACAAGTCA+GGG | 0.545079 | 7.4:-11218627 | MS.gene018590:CDS |
| TGTGTTACTCCTGAAATTGA+AGG | 0.546438 | 7.4:-11218679 | MS.gene018590:CDS |
| GGTATCAAAAGGCCTTCAAT+GGG | 0.549973 | 7.4:-11218238 | MS.gene018590:CDS |
| AGGTACAACATTTATGTCAC+CGG | 0.553155 | 7.4:+11218144 | None:intergenic |
| CCATTTCCACATGGTTGGAA+GGG | 0.558378 | 7.4:-11217670 | MS.gene018590:CDS |
| ATATTCACCTGAAGCCAAGA+AGG | 0.558667 | 7.4:+11218019 | None:intergenic |
| TGAACACACTCGTTGAATTG+CGG | 0.561991 | 7.4:+11218805 | None:intergenic |
| GGAAATCTTCAGGCATTGGA+AGG | 0.566772 | 7.4:+11218896 | None:intergenic |
| ATGTTGTACCTGGAATCAAA+AGG | 0.567602 | 7.4:-11218132 | MS.gene018590:CDS |
| GGACCTGTGATCATAGGTGC+AGG | 0.569251 | 7.4:-11219072 | MS.gene018590:CDS |
| TAGCGGTTATGATGTTGAAG+TGG | 0.573120 | 7.4:-11218333 | MS.gene018590:CDS |
| GCTTTGGAGAAAATTAGATC+CGG | 0.578995 | 7.4:-11218163 | MS.gene018590:CDS |
| GCTGTAGGGTTCACAAAGAG+AGG | 0.580060 | 7.4:-11217631 | MS.gene018590:CDS |
| GCTGCCGTTGCAAGACCAGA+TGG | 0.585259 | 7.4:+11219048 | None:intergenic |
| GTGAAGTTTCAATCTGTCGT+AGG | 0.589564 | 7.4:+11218948 | None:intergenic |
| ATTCAGGACTATATGCTGTA+GGG | 0.590290 | 7.4:-11217645 | MS.gene018590:CDS |
| TTGAAGTTGAAGAACACAGA+AGG | 0.590910 | 7.4:-11218211 | MS.gene018590:CDS |
| CCAAAGATGCCATTTCCACA+TGG | 0.597297 | 7.4:-11217679 | MS.gene018590:CDS |
| GCAGCATGTCTTAGAGAACA+AGG | 0.601445 | 7.4:-11219030 | MS.gene018590:CDS |
| TGGATGTGGAAATTCTGGAA+TGG | 0.605555 | 7.4:-11218572 | MS.gene018590:CDS |
| AAGTTGAGTACATTTGTAGG+TGG | 0.605781 | 7.4:-11218732 | MS.gene018590:CDS |
| GGTGACATAAATGTTGTACC+TGG | 0.608839 | 7.4:-11218142 | MS.gene018590:CDS |
| TATTCACCTGAAGCCAAGAA+GGG | 0.613263 | 7.4:+11218020 | None:intergenic |
| CTGTAGGGTTCACAAAGAGA+GGG | 0.613353 | 7.4:-11217630 | MS.gene018590:CDS |
| ATGATGAAACCAGTGGATTG+TGG | 0.614186 | 7.4:-11218771 | MS.gene018590:CDS |
| GGACCTGCACCTATGATCAC+AGG | 0.615165 | 7.4:+11219069 | None:intergenic |
| GTCCATTGACCCAAATGCAA+CGG | 0.615198 | 7.4:+11219091 | None:intergenic |
| GTGGTTACCACTTTGGATTG+TGG | 0.615333 | 7.4:-11218314 | MS.gene018590:CDS |
| AGCTCTTTCGAGAACAACGA+AGG | 0.625793 | 7.4:+11219002 | None:intergenic |
| AGGTCCATCTGGTCTTGCAA+CGG | 0.627266 | 7.4:-11219052 | MS.gene018590:CDS |
| GAATTTCCCTTCCAACCATG+TGG | 0.635313 | 7.4:+11217664 | None:intergenic |
| GAGCTACGAACAACCATGGA+AGG | 0.637115 | 7.4:+11218514 | None:intergenic |
| AGCTTGTCCACAATCCAAAG+TGG | 0.643807 | 7.4:+11218307 | None:intergenic |
| TACCGAGCTACGAACAACCA+TGG | 0.644442 | 7.4:+11218510 | None:intergenic |
| CAGCATGTCTTAGAGAACAA+GGG | 0.645300 | 7.4:-11219029 | MS.gene018590:CDS |
| AGCATGTCTTAGAGAACAAG+GGG | 0.647019 | 7.4:-11219028 | MS.gene018590:CDS |
| GCTAAGTATGATGAAACCAG+TGG | 0.647995 | 7.4:-11218778 | MS.gene018590:CDS |
| AACGGCGTGAGAGAAAGTCT+TGG | 0.654245 | 7.4:+11219109 | None:intergenic |
| GCCAAGAAGGGACATTGCTG+CGG | 0.662896 | 7.4:+11218032 | None:intergenic |
| GCTCTTTCGAGAACAACGAA+GGG | 0.679788 | 7.4:+11219003 | None:intergenic |
| ATGAAACCAGTGGATTGTGG+AGG | 0.691994 | 7.4:-11218768 | MS.gene018590:CDS |
| GAACACAGAAGGAAAGACAC+CGG | 0.709214 | 7.4:-11218200 | MS.gene018590:CDS |
| TGAAACCAGTGGATTGTGGA+GGG | 0.710675 | 7.4:-11218767 | MS.gene018590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGTAAATTTTTTTAACTT+AGG | - | chr7.4:11218197-11218216 | MS.gene018590:CDS | 10.0% |
| !!! | TCAAATTTAAAACTTTTTTA+AGG | - | chr7.4:11218814-11218833 | MS.gene018590:CDS | 10.0% |
| !!! | ATCAAGTAACTAATTAATTT+TGG | - | chr7.4:11218897-11218916 | MS.gene018590:CDS | 15.0% |
| !! | ATCAAAAGGTTTAATAATCA+TGG | - | chr7.4:11218524-11218543 | MS.gene018590:CDS | 20.0% |
| !!! | AATATCAACTTTTGAATTAG+CGG | - | chr7.4:11218292-11218311 | MS.gene018590:CDS | 20.0% |
| !!! | TAAAACTTTTTTAAGGCATA+TGG | - | chr7.4:11218821-11218840 | MS.gene018590:CDS | 20.0% |
| !!! | TAATTTTGGTTATGTTATAC+AGG | - | chr7.4:11218911-11218930 | MS.gene018590:CDS | 20.0% |
| !!! | TTATGAATTGTTTCTTTGAA+GGG | + | chr7.4:11217779-11217798 | None:intergenic | 20.0% |
| ! | AGGATGAAAAAAATCTAACT+GGG | - | chr7.4:11218217-11218236 | MS.gene018590:CDS | 25.0% |
| ! | GATATTCCAAATATTTCTCT+AGG | + | chr7.4:11218278-11218297 | None:intergenic | 25.0% |
| ! | GTTAAAATTGCACAAGATAT+TGG | - | chr7.4:11219059-11219078 | MS.gene018590:CDS | 25.0% |
| ! | TAGGATGAAAAAAATCTAAC+TGG | - | chr7.4:11218216-11218235 | MS.gene018590:CDS | 25.0% |
| ! | TGGAAAAATATGGTATCAAA+AGG | - | chr7.4:11218393-11218412 | MS.gene018590:intron | 25.0% |
| !! | CTTATGAATTGTTTCTTTGA+AGG | + | chr7.4:11217780-11217799 | None:intergenic | 25.0% |
| !!! | ATTTGTTAGCATAGTTTTCA+AGG | + | chr7.4:11217806-11217825 | None:intergenic | 25.0% |
| !!! | ATTTTGACATGGTTCATTTT+GGG | - | chr7.4:11218365-11218384 | MS.gene018590:CDS | 25.0% |
| !!! | TGTTCTGTTTTTTTTACTAC+AGG | - | chr7.4:11218241-11218260 | MS.gene018590:CDS | 25.0% |
| !!! | TTATTAAACCTTTTGATTCC+AGG | + | chr7.4:11218521-11218540 | None:intergenic | 25.0% |
| ATGAAGTTGAGTACATTTGT+AGG | - | chr7.4:11217907-11217926 | MS.gene018590:intron | 30.0% | |
| ATTAATACTGACACAGATAC+CGG | + | chr7.4:11218174-11218193 | None:intergenic | 30.0% | |
| CACAAGATATTGGAAAAGTT+TGG | - | chr7.4:11219069-11219088 | MS.gene018590:CDS | 30.0% | |
| TTTGGTTATGTTATACAGGA+AGG | - | chr7.4:11218915-11218934 | MS.gene018590:CDS | 30.0% | |
| ! | AAGTCAGGGAAAAATTTTGA+AGG | - | chr7.4:11218029-11218048 | MS.gene018590:CDS | 30.0% |
| ! | GGTGAATTTTTCTCCAAAAA+TGG | - | chr7.4:11218936-11218955 | MS.gene018590:CDS | 30.0% |
| !! | GATTTTGACATGGTTCATTT+TGG | - | chr7.4:11218364-11218383 | MS.gene018590:CDS | 30.0% |
| !!! | AGCTTTTGTTGATTTTGACA+TGG | - | chr7.4:11218354-11218373 | MS.gene018590:CDS | 30.0% |
| AAGTTGAGTACATTTGTAGG+TGG | - | chr7.4:11217910-11217929 | MS.gene018590:intron | 35.0% | |
| AATTCAGGACTATATGCTGT+AGG | - | chr7.4:11218996-11219015 | MS.gene018590:CDS | 35.0% | |
| AGGTACAACATTTATGTCAC+CGG | + | chr7.4:11218501-11218520 | None:intergenic | 35.0% | |
| ATGCTTGTGATTACAAGTCA+GGG | - | chr7.4:11218015-11218034 | MS.gene018590:intron | 35.0% | |
| ATGTTGTACCTGGAATCAAA+AGG | - | chr7.4:11218510-11218529 | MS.gene018590:intron | 35.0% | |
| ATTCAGGACTATATGCTGTA+GGG | - | chr7.4:11218997-11219016 | MS.gene018590:CDS | 35.0% | |
| GAAGGACTTTCTGAATTCAA+AGG | - | chr7.4:11217981-11218000 | MS.gene018590:intron | 35.0% | |
| GTGCTACCTAGAGAAATATT+TGG | - | chr7.4:11218269-11218288 | MS.gene018590:CDS | 35.0% | |
| TATGCTTGTGATTACAAGTC+AGG | - | chr7.4:11218014-11218033 | MS.gene018590:intron | 35.0% | |
| TCAGAAAGTCCTTCAATTTC+AGG | + | chr7.4:11217975-11217994 | None:intergenic | 35.0% | |
| TCTGGCTAAATCTTAGTTGT+TGG | - | chr7.4:11218703-11218722 | MS.gene018590:CDS | 35.0% | |
| TCTGTGTTCTTCAACTTCAA+AGG | + | chr7.4:11218431-11218450 | None:intergenic | 35.0% | |
| TTGAAGTTGAAGAACACAGA+AGG | - | chr7.4:11218431-11218450 | MS.gene018590:intron | 35.0% | |
| TTGGGTGACATGGAAAAATA+TGG | - | chr7.4:11218383-11218402 | MS.gene018590:intron | 35.0% | |
| ! | AACATGTCTTTTCTATCCTC+CGG | + | chr7.4:11218778-11218797 | None:intergenic | 35.0% |
| ! | CATCTTTGGGTATCCATTTT+TGG | + | chr7.4:11218952-11218971 | None:intergenic | 35.0% |
| ! | GGAAAGAAAGTTCTTGTTGT+TGG | - | chr7.4:11218050-11218069 | MS.gene018590:CDS | 35.0% |
| ! | GGTAGTTGACAGAATTGTTT+TGG | + | chr7.4:11217723-11217742 | None:intergenic | 35.0% |
| ! | TCCGACAACAAAGATTTTAC+CGG | - | chr7.4:11218756-11218775 | MS.gene018590:CDS | 35.0% |
| ! | TCCGGTAAAATCTTTGTTGT+CGG | + | chr7.4:11218760-11218779 | None:intergenic | 35.0% |
| ! | TGTGTTACTCCTGAAATTGA+AGG | - | chr7.4:11217963-11217982 | MS.gene018590:intron | 35.0% |
| !! | AAAGTTCTTGTTGTTGGATG+TGG | - | chr7.4:11218056-11218075 | MS.gene018590:CDS | 35.0% |
| !! | GCTTTGGAGAAAATTAGATC+CGG | - | chr7.4:11218479-11218498 | MS.gene018590:intron | 35.0% |
| !! | GTTTCTTTGAAGGGTATTCA+GGG | + | chr7.4:11217770-11217789 | None:intergenic | 35.0% |
| !! | TGTTTCTTTGAAGGGTATTC+AGG | + | chr7.4:11217771-11217790 | None:intergenic | 35.0% |
| !!! | GTAAGTTCTTTTTCAGTGTC+CGG | - | chr7.4:11218152-11218171 | MS.gene018590:CDS | 35.0% |
| !!! | GTTGACAGAATTGTTTTGGA+AGG | + | chr7.4:11217719-11217738 | None:intergenic | 35.0% |
| AACTTCAAAGGACCCATTGA+AGG | + | chr7.4:11218419-11218438 | None:intergenic | 40.0% | |
| AGCATGTCTTAGAGAACAAG+GGG | - | chr7.4:11217614-11217633 | MS.gene018590:CDS | 40.0% | |
| ATATTCACCTGAAGCCAAGA+AGG | + | chr7.4:11218626-11218645 | None:intergenic | 40.0% | |
| CAACTAAGATTTAGCCAGAG+CGG | + | chr7.4:11218702-11218721 | None:intergenic | 40.0% | |
| CAGCATGTCTTAGAGAACAA+GGG | - | chr7.4:11217613-11217632 | MS.gene018590:CDS | 40.0% | |
| CATGTGGAAATGGCATCTTT+GGG | + | chr7.4:11218965-11218984 | None:intergenic | 40.0% | |
| CTGATTGCATAGCATCACTA+TGG | - | chr7.4:11217661-11217680 | MS.gene018590:CDS | 40.0% | |
| GCTAAGTATGATGAAACCAG+TGG | - | chr7.4:11217864-11217883 | MS.gene018590:intron | 40.0% | |
| GGTATCAAAAGGCCTTCAAT+GGG | - | chr7.4:11218404-11218423 | MS.gene018590:intron | 40.0% | |
| GGTGACATAAATGTTGTACC+TGG | - | chr7.4:11218500-11218519 | MS.gene018590:intron | 40.0% | |
| GTGAAGTTTCAATCTGTCGT+AGG | + | chr7.4:11217697-11217716 | None:intergenic | 40.0% | |
| GTTGTTGGATGTGGAAATTC+TGG | - | chr7.4:11218065-11218084 | MS.gene018590:CDS | 40.0% | |
| TAGCGGTTATGATGTTGAAG+TGG | - | chr7.4:11218309-11218328 | MS.gene018590:CDS | 40.0% | |
| TATTCACCTGAAGCCAAGAA+GGG | + | chr7.4:11218625-11218644 | None:intergenic | 40.0% | |
| TCATCATGCTTTACCTTCCA+TGG | - | chr7.4:11218115-11218134 | MS.gene018590:CDS | 40.0% | |
| TGAACACACTCGTTGAATTG+CGG | + | chr7.4:11217840-11217859 | None:intergenic | 40.0% | |
| TGGTATCAAAAGGCCTTCAA+TGG | - | chr7.4:11218403-11218422 | MS.gene018590:intron | 40.0% | |
| TGTTGAAGTGGTTACCACTT+TGG | - | chr7.4:11218321-11218340 | MS.gene018590:CDS | 40.0% | |
| ! | AAAGCACCAATGTCCAAAAC+CGG | + | chr7.4:11218464-11218483 | None:intergenic | 40.0% |
| ! | AGTTGACTTAGATCCTCTTC+TGG | - | chr7.4:11218676-11218695 | MS.gene018590:CDS | 40.0% |
| ! | GACAACAAAGATTTTACCGG+AGG | - | chr7.4:11218759-11218778 | MS.gene018590:CDS | 40.0% |
| ! | TGGATGTGGAAATTCTGGAA+TGG | - | chr7.4:11218070-11218089 | MS.gene018590:CDS | 40.0% |
| !! | ATGATGAAACCAGTGGATTG+TGG | - | chr7.4:11217871-11217890 | MS.gene018590:intron | 40.0% |
| !! | ATGGTTCATTTTGGGTGACA+TGG | - | chr7.4:11218373-11218392 | MS.gene018590:CDS | 40.0% |
| !! | GGTGAAGTTGAGCTTGTTAA+TGG | - | chr7.4:11218545-11218564 | MS.gene018590:CDS | 40.0% |
| AGCTCTTTCGAGAACAACGA+AGG | + | chr7.4:11217643-11217662 | None:intergenic | 45.0% | |
| AGCTTGTCCACAATCCAAAG+TGG | + | chr7.4:11218338-11218357 | None:intergenic | 45.0% | |
| CATGGTTGGAAGGGAAATTC+AGG | - | chr7.4:11218981-11219000 | MS.gene018590:CDS | 45.0% | |
| CCATGTGGAAATGGCATCTT+TGG | + | chr7.4:11218966-11218985 | None:intergenic | 45.0% | |
| CCATTTCCACATGGTTGGAA+GGG | - | chr7.4:11218972-11218991 | MS.gene018590:CDS | 45.0% | |
| CTGTAGGGTTCACAAAGAGA+GGG | - | chr7.4:11219012-11219031 | MS.gene018590:CDS | 45.0% | |
| GAACACACTCGTTGAATTGC+GGG | + | chr7.4:11217839-11217858 | None:intergenic | 45.0% | |
| GAACACAGAAGGAAAGACAC+CGG | - | chr7.4:11218442-11218461 | MS.gene018590:intron | 45.0% | |
| GAATTTCCCTTCCAACCATG+TGG | + | chr7.4:11218981-11219000 | None:intergenic | 45.0% | |
| GATGCAGTTGTTCTTGCTAC+CGG | - | chr7.4:11218584-11218603 | MS.gene018590:CDS | 45.0% | |
| GCAGCATGTCTTAGAGAACA+AGG | - | chr7.4:11217612-11217631 | MS.gene018590:CDS | 45.0% | |
| GCTCTTTCGAGAACAACGAA+GGG | + | chr7.4:11217642-11217661 | None:intergenic | 45.0% | |
| GGGTATTCAGGGAAATCTTC+AGG | + | chr7.4:11217759-11217778 | None:intergenic | 45.0% | |
| GTCAATGGACCTGTGATCAT+AGG | - | chr7.4:11217564-11217583 | MS.gene018590:CDS | 45.0% | |
| GTCCATTGACCCAAATGCAA+CGG | + | chr7.4:11217554-11217573 | None:intergenic | 45.0% | |
| GTGGTTACCACTTTGGATTG+TGG | - | chr7.4:11218328-11218347 | MS.gene018590:CDS | 45.0% | |
| TCAGGGAAATCTTCAGGCAT+TGG | + | chr7.4:11217753-11217772 | None:intergenic | 45.0% | |
| TTCACAAAGAGAGGGCTTTC+TGG | - | chr7.4:11219020-11219039 | MS.gene018590:CDS | 45.0% | |
| TTCCATGGTTGTTCGTAGCT+CGG | - | chr7.4:11218130-11218149 | MS.gene018590:CDS | 45.0% | |
| ! | AACACACTCAGCATTTTCGC+CGG | + | chr7.4:11217949-11217968 | None:intergenic | 45.0% |
| ! | AGATGCCATTTCCACATGGT+TGG | - | chr7.4:11218967-11218986 | MS.gene018590:CDS | 45.0% |
| ! | CCAAAGATGCCATTTCCACA+TGG | - | chr7.4:11218963-11218982 | MS.gene018590:CDS | 45.0% |
| !! | ATGAAACCAGTGGATTGTGG+AGG | - | chr7.4:11217874-11217893 | MS.gene018590:intron | 45.0% |
| !! | GGAAATCTTCAGGCATTGGA+AGG | + | chr7.4:11217749-11217768 | None:intergenic | 45.0% |
| !! | TCTTCAGGCATTGGAAGGTT+AGG | + | chr7.4:11217744-11217763 | None:intergenic | 45.0% |
| !! | TGAAACCAGTGGATTGTGGA+GGG | - | chr7.4:11217875-11217894 | MS.gene018590:intron | 45.0% |
| !!! | AAGACACCGGTTTTGGACAT+TGG | - | chr7.4:11218455-11218474 | MS.gene018590:intron | 45.0% |
| !!! | AGAAGGAAAGACACCGGTTT+TGG | - | chr7.4:11218448-11218467 | MS.gene018590:intron | 45.0% |
| !!! | GGTTTTGGACATTGGTGCTT+TGG | - | chr7.4:11218463-11218482 | MS.gene018590:intron | 45.0% |
| AACGGCGTGAGAGAAAGTCT+TGG | + | chr7.4:11217536-11217555 | None:intergenic | 50.0% | |
| ATCATAGGTGCAGGTCCATC+TGG | - | chr7.4:11217579-11217598 | MS.gene018590:CDS | 50.0% | |
| CAATGTCCCTTCTTGGCTTC+AGG | - | chr7.4:11218616-11218635 | MS.gene018590:CDS | 50.0% | |
| CCCTTCCAACCATGTGGAAA+TGG | + | chr7.4:11218975-11218994 | None:intergenic | 50.0% | |
| CTTAACCCTCCACAATCCAC+TGG | + | chr7.4:11217883-11217902 | None:intergenic | 50.0% | |
| GAGCTACGAACAACCATGGA+AGG | + | chr7.4:11218131-11218150 | None:intergenic | 50.0% | |
| GCCATTTCCACATGGTTGGA+AGG | - | chr7.4:11218971-11218990 | MS.gene018590:CDS | 50.0% | |
| GCTGTAGGGTTCACAAAGAG+AGG | - | chr7.4:11219011-11219030 | MS.gene018590:CDS | 50.0% | |
| TACCGAGCTACGAACAACCA+TGG | + | chr7.4:11218135-11218154 | None:intergenic | 50.0% | |
| TCTCTCACGCCGTTGCATTT+GGG | - | chr7.4:11217542-11217561 | MS.gene018590:CDS | 50.0% | |
| TTCTCTCACGCCGTTGCATT+TGG | - | chr7.4:11217541-11217560 | MS.gene018590:CDS | 50.0% | |
| !! | AGGTCCATCTGGTCTTGCAA+CGG | - | chr7.4:11217590-11217609 | MS.gene018590:CDS | 50.0% |
| !! | AGGTGGCTTGTTGTTGCTAC+CGG | - | chr7.4:11217927-11217946 | MS.gene018590:intron | 50.0% |
| ACCGCAGCAATGTCCCTTCT+TGG | - | chr7.4:11218609-11218628 | MS.gene018590:CDS | 55.0% | |
| AGGGACATTGCTGCGGTAAC+CGG | + | chr7.4:11218606-11218625 | None:intergenic | 55.0% | |
| CGCCGTTGCATTTGGGTCAA+TGG | - | chr7.4:11217549-11217568 | MS.gene018590:CDS | 55.0% | |
| GCCAAGAAGGGACATTGCTG+CGG | + | chr7.4:11218613-11218632 | None:intergenic | 55.0% | |
| GGACCTGCACCTATGATCAC+AGG | + | chr7.4:11217576-11217595 | None:intergenic | 55.0% | |
| GGACCTGTGATCATAGGTGC+AGG | - | chr7.4:11217570-11217589 | MS.gene018590:CDS | 55.0% | |
| AGATCCTCTTCTGGCCGCTC+TGG | - | chr7.4:11218685-11218704 | MS.gene018590:CDS | 60.0% | |
| GCTGCCGTTGCAAGACCAGA+TGG | + | chr7.4:11217597-11217616 | None:intergenic | 60.0% | |
| TTAGCCAGAGCGGCCAGAAG+AGG | + | chr7.4:11218692-11218711 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 11217504 | 11219160 | 11217504 | ID=MS.gene018590 |
| chr7.4 | mRNA | 11217504 | 11219160 | 11217504 | ID=MS.gene018590.t1;Parent=MS.gene018590 |
| chr7.4 | exon | 11218513 | 11219160 | 11218513 | ID=MS.gene018590.t1.exon1;Parent=MS.gene018590.t1 |
| chr7.4 | CDS | 11218513 | 11219160 | 11218513 | ID=cds.MS.gene018590.t1;Parent=MS.gene018590.t1 |
| chr7.4 | exon | 11218027 | 11218401 | 11218027 | ID=MS.gene018590.t1.exon2;Parent=MS.gene018590.t1 |
| chr7.4 | CDS | 11218027 | 11218401 | 11218027 | ID=cds.MS.gene018590.t1;Parent=MS.gene018590.t1 |
| chr7.4 | exon | 11217504 | 11217731 | 11217504 | ID=MS.gene018590.t1.exon3;Parent=MS.gene018590.t1 |
| chr7.4 | CDS | 11217504 | 11217731 | 11217504 | ID=cds.MS.gene018590.t1;Parent=MS.gene018590.t1 |
| Gene Sequence |
| Protein sequence |
