Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32792.t1 | XP_003603602.1 | 96.9 | 425 | 11 | 1 | 1 | 425 | 1 | 423 | 7.40E-243 | 849.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32792.t1 | Q8VZ59 | 69.2 | 419 | 114 | 4 | 1 | 416 | 1 | 407 | 2.0e-167 | 590.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32792.t1 | G7J3E6 | 96.9 | 425 | 11 | 1 | 1 | 425 | 1 | 423 | 5.4e-243 | 849.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32792 | MS.gene064951 | PPI |
| MS.gene32792 | MS.gene44331 | PPI |
| MS.gene64265 | MS.gene32792 | PPI |
| MS.gene32792 | MS.gene06418 | PPI |
| MS.gene36879 | MS.gene32792 | PPI |
| MS.gene09884 | MS.gene32792 | PPI |
| MS.gene32792 | MS.gene53594 | PPI |
| MS.gene32792 | MS.gene038029 | PPI |
| MS.gene059027 | MS.gene32792 | PPI |
| MS.gene44332 | MS.gene32792 | PPI |
| MS.gene049295 | MS.gene32792 | PPI |
| MS.gene51580 | MS.gene32792 | PPI |
| MS.gene57685 | MS.gene32792 | PPI |
| MS.gene019484 | MS.gene32792 | PPI |
| MS.gene32792 | MS.gene60245 | PPI |
| MS.gene027681 | MS.gene32792 | PPI |
| MS.gene32792 | MS.gene061851 | PPI |
| MS.gene61665 | MS.gene32792 | PPI |
| MS.gene24021 | MS.gene32792 | PPI |
| MS.gene013322 | MS.gene32792 | PPI |
| MS.gene018590 | MS.gene32792 | PPI |
| MS.gene29205 | MS.gene32792 | PPI |
| MS.gene32792 | MS.gene054944 | PPI |
| MS.gene23537 | MS.gene32792 | PPI |
| MS.gene015953 | MS.gene32792 | PPI |
| MS.gene94810 | MS.gene32792 | PPI |
| MS.gene86173 | MS.gene32792 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32792.t1 | MTR_3g109520 | 96.941 | 425 | 11 | 1 | 1 | 425 | 1 | 423 | 0.0 | 849 |
| MS.gene32792.t1 | MTR_1g008380 | 76.887 | 424 | 96 | 2 | 1 | 423 | 1 | 423 | 0.0 | 661 |
| MS.gene32792.t1 | MTR_6g086870 | 66.667 | 396 | 129 | 1 | 22 | 414 | 1 | 396 | 0.0 | 558 |
| MS.gene32792.t1 | MTR_1g069275 | 61.250 | 400 | 151 | 3 | 25 | 423 | 9 | 405 | 0.0 | 513 |
| MS.gene32792.t1 | MTR_1g046230 | 59.391 | 394 | 157 | 2 | 32 | 423 | 15 | 407 | 2.52e-173 | 491 |
| MS.gene32792.t1 | MTR_7g099330 | 59.694 | 392 | 150 | 3 | 33 | 423 | 16 | 400 | 2.82e-173 | 491 |
| MS.gene32792.t1 | MTR_1g011630 | 59.788 | 378 | 147 | 3 | 36 | 413 | 11 | 383 | 1.56e-170 | 484 |
| MS.gene32792.t1 | MTR_7g099160 | 57.595 | 316 | 126 | 3 | 109 | 423 | 213 | 521 | 7.90e-126 | 375 |
| MS.gene32792.t1 | MTR_8g432640 | 45.845 | 373 | 196 | 2 | 42 | 413 | 7 | 374 | 3.44e-120 | 355 |
| MS.gene32792.t1 | MTR_7g107690 | 44.974 | 378 | 202 | 2 | 42 | 418 | 9 | 381 | 3.56e-120 | 355 |
| MS.gene32792.t1 | MTR_7g107710 | 46.354 | 384 | 198 | 4 | 42 | 423 | 7 | 384 | 1.30e-118 | 351 |
| MS.gene32792.t1 | MTR_5g033260 | 45.576 | 373 | 197 | 2 | 42 | 413 | 7 | 374 | 1.58e-118 | 350 |
| MS.gene32792.t1 | MTR_3g088925 | 43.636 | 385 | 211 | 2 | 42 | 425 | 8 | 387 | 3.42e-115 | 343 |
| MS.gene32792.t1 | MTR_3g088945 | 43.377 | 385 | 212 | 2 | 42 | 425 | 8 | 387 | 2.10e-114 | 340 |
| MS.gene32792.t1 | MTR_3g088955 | 43.636 | 385 | 211 | 2 | 42 | 425 | 8 | 387 | 1.24e-113 | 338 |
| MS.gene32792.t1 | MTR_4g051642 | 43.421 | 380 | 208 | 3 | 42 | 420 | 8 | 381 | 4.46e-112 | 335 |
| MS.gene32792.t1 | MTR_3g096030 | 39.205 | 176 | 83 | 1 | 42 | 217 | 7 | 158 | 2.04e-39 | 139 |
| MS.gene32792.t1 | MTR_3g437580 | 25.969 | 258 | 149 | 7 | 43 | 267 | 15 | 263 | 3.97e-17 | 82.8 |
| MS.gene32792.t1 | MTR_8g037910 | 25.238 | 210 | 127 | 4 | 43 | 226 | 6 | 211 | 5.58e-17 | 80.9 |
| MS.gene32792.t1 | MTR_8g037880 | 25.943 | 212 | 124 | 6 | 43 | 226 | 6 | 212 | 6.45e-17 | 82.8 |
| MS.gene32792.t1 | MTR_3g437580 | 25.000 | 240 | 135 | 6 | 43 | 247 | 15 | 244 | 8.00e-17 | 82.4 |
| MS.gene32792.t1 | MTR_8g037910 | 25.238 | 210 | 127 | 4 | 43 | 226 | 6 | 211 | 1.12e-16 | 80.9 |
| MS.gene32792.t1 | MTR_8g037910 | 25.238 | 210 | 127 | 4 | 43 | 226 | 6 | 211 | 2.18e-16 | 81.3 |
| MS.gene32792.t1 | MTR_2g450310 | 28.800 | 250 | 132 | 13 | 43 | 251 | 7 | 251 | 7.27e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32792.t1 | AT5G25620 | 68.235 | 425 | 120 | 4 | 1 | 422 | 1 | 413 | 0.0 | 588 |
| MS.gene32792.t1 | AT5G25620 | 68.235 | 425 | 120 | 4 | 1 | 422 | 1 | 413 | 0.0 | 587 |
| MS.gene32792.t1 | AT4G13260 | 65.770 | 409 | 128 | 1 | 7 | 415 | 6 | 402 | 0.0 | 556 |
| MS.gene32792.t1 | AT4G28720 | 58.706 | 402 | 162 | 3 | 25 | 423 | 9 | 409 | 6.73e-177 | 501 |
| MS.gene32792.t1 | AT1G04610 | 57.107 | 401 | 168 | 2 | 26 | 423 | 22 | 421 | 6.60e-171 | 486 |
| MS.gene32792.t1 | AT5G11320 | 59.791 | 383 | 147 | 2 | 31 | 413 | 7 | 382 | 1.16e-170 | 484 |
| MS.gene32792.t1 | AT1G04180 | 60.305 | 393 | 152 | 4 | 31 | 422 | 15 | 404 | 1.80e-170 | 484 |
| MS.gene32792.t1 | AT5G43890 | 59.500 | 400 | 158 | 4 | 27 | 423 | 10 | 408 | 3.53e-170 | 484 |
| MS.gene32792.t1 | AT2G33230 | 60.560 | 393 | 150 | 2 | 34 | 423 | 25 | 415 | 1.24e-169 | 483 |
| MS.gene32792.t1 | AT4G32540 | 56.061 | 396 | 165 | 4 | 19 | 413 | 1 | 388 | 1.62e-162 | 464 |
| MS.gene32792.t1 | AT4G32540 | 56.030 | 398 | 164 | 5 | 19 | 413 | 1 | 390 | 9.54e-161 | 459 |
| MS.gene32792.t1 | AT4G13260 | 64.780 | 318 | 100 | 1 | 7 | 324 | 6 | 311 | 5.25e-148 | 423 |
| MS.gene32792.t1 | AT5G11320 | 59.760 | 333 | 128 | 1 | 31 | 363 | 7 | 333 | 2.53e-147 | 423 |
| MS.gene32792.t1 | AT4G13260 | 68.493 | 292 | 92 | 0 | 124 | 415 | 8 | 299 | 2.21e-142 | 409 |
| MS.gene32792.t1 | AT1G21430 | 49.202 | 376 | 180 | 5 | 42 | 414 | 10 | 377 | 9.12e-125 | 367 |
| MS.gene32792.t1 | AT1G48910 | 45.358 | 377 | 200 | 2 | 42 | 417 | 6 | 377 | 2.01e-120 | 355 |
| MS.gene32792.t1 | AT5G07800 | 26.840 | 231 | 135 | 6 | 30 | 226 | 5 | 235 | 2.00e-17 | 84.3 |
| MS.gene32792.t1 | AT5G61290 | 28.326 | 233 | 122 | 8 | 43 | 234 | 18 | 246 | 3.35e-17 | 84.0 |
| MS.gene32792.t1 | AT1G12140 | 26.160 | 237 | 130 | 8 | 57 | 259 | 29 | 254 | 7.60e-15 | 76.6 |
| MS.gene32792.t1 | AT1G12140 | 26.160 | 237 | 130 | 8 | 57 | 259 | 29 | 254 | 7.60e-15 | 76.6 |
| MS.gene32792.t1 | AT1G65860 | 27.103 | 214 | 122 | 7 | 43 | 226 | 15 | 224 | 6.70e-14 | 73.6 |
| MS.gene32792.t1 | AT1G62620 | 24.766 | 214 | 131 | 5 | 43 | 226 | 15 | 228 | 2.20e-13 | 71.6 |
| MS.gene32792.t1 | AT1G63370 | 24.299 | 214 | 132 | 5 | 43 | 226 | 15 | 228 | 4.78e-13 | 70.5 |
| MS.gene32792.t1 | AT1G62620 | 24.766 | 214 | 131 | 5 | 43 | 226 | 15 | 228 | 4.82e-13 | 70.9 |
| MS.gene32792.t1 | AT1G12130 | 27.564 | 156 | 102 | 5 | 81 | 226 | 73 | 227 | 8.02e-13 | 70.5 |
| MS.gene32792.t1 | AT1G63370 | 24.299 | 214 | 132 | 5 | 43 | 226 | 15 | 228 | 1.08e-12 | 70.1 |
| MS.gene32792.t1 | AT1G12200 | 25.490 | 204 | 117 | 6 | 57 | 227 | 30 | 231 | 2.20e-12 | 68.6 |
| MS.gene32792.t1 | AT1G12200 | 25.490 | 204 | 117 | 6 | 57 | 227 | 30 | 231 | 2.40e-12 | 68.9 |
| MS.gene32792.t1 | AT1G12160 | 23.750 | 240 | 145 | 8 | 43 | 254 | 14 | 243 | 8.94e-12 | 67.0 |
| MS.gene32792.t1 | AT1G12140 | 27.092 | 251 | 136 | 9 | 43 | 259 | 15 | 252 | 2.14e-11 | 65.9 |
Find 97 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTGTGAATTACCCTTTA+TGG | 0.057569 | 3.1:-82676379 | MS.gene32792:CDS |
| GTTGTTGGTTGTGGTAATTC+TGG | 0.228655 | 3.1:-82676024 | MS.gene32792:CDS |
| GCTGAATTTGATGGTAAAAT+TGG | 0.229798 | 3.1:-82676243 | MS.gene32792:CDS |
| ATTGAAGGTGTAGATGAATT+TGG | 0.230080 | 3.1:-82676111 | MS.gene32792:CDS |
| TGCTAGGAAAATCAACTTTC+GGG | 0.237487 | 3.1:-82675012 | MS.gene32792:CDS |
| GGTAATTCACAGAATTGTTT+TGG | 0.279240 | 3.1:+82676387 | None:intergenic |
| CTAATTGTGTGGCTTCATTA+TGG | 0.292482 | 3.1:-82676446 | MS.gene32792:CDS |
| AATGTGTCCACCTTTAATTT+TGG | 0.293841 | 3.1:+82674811 | None:intergenic |
| GAAGATTATGCAGAGAGTTT+TGG | 0.298205 | 3.1:-82676300 | MS.gene32792:CDS |
| ATGAATTTGGAGGGGTTATA+AGG | 0.303286 | 3.1:-82676098 | MS.gene32792:CDS |
| TGGGTTGGATCGTCCTCGTT+TGG | 0.307911 | 3.1:-82674894 | MS.gene32792:CDS |
| GGTACCCTTGCCAAAATTAA+AGG | 0.309195 | 3.1:-82674821 | MS.gene32792:CDS |
| AATTAAAGGTGGACACATTA+AGG | 0.324307 | 3.1:-82674807 | MS.gene32792:intron |
| TTCTCTTGTTGTTCGAGATT+CGG | 0.332436 | 3.1:-82675959 | MS.gene32792:intron |
| GGTTCTTGCTCATAGTTTCA+TGG | 0.338911 | 3.1:-82674943 | MS.gene32792:CDS |
| GTTTAGAGGGAAGAAAGTTT+TGG | 0.342078 | 3.1:-82676046 | MS.gene32792:CDS |
| TCATCTACACCTTCAATATT+AGG | 0.342806 | 3.1:+82676117 | None:intergenic |
| ATCGTAGGAGCAGGACCTTC+TGG | 0.343082 | 3.1:-82676528 | MS.gene32792:CDS |
| CCACTTGGAAATGGCTTCAT+AGG | 0.347378 | 3.1:+82672693 | None:intergenic |
| ATGCTAGGAAAATCAACTTT+CGG | 0.354338 | 3.1:-82675013 | MS.gene32792:CDS |
| GGGACTGCAAGGTGCCTCTA+TGG | 0.365215 | 3.1:-82672625 | MS.gene32792:CDS |
| CCTTTCCACCCACTTGGAAA+TGG | 0.368720 | 3.1:+82672684 | None:intergenic |
| ATCTGAGGGGAATTCCATAA+AGG | 0.386429 | 3.1:+82676365 | None:intergenic |
| ACAAAAGCAATGTTCCCTAT+TGG | 0.386603 | 3.1:-82673694 | MS.gene32792:CDS |
| GGGTTGGATCGTCCTCGTTT+GGG | 0.392628 | 3.1:-82674893 | MS.gene32792:CDS |
| ATATCATACCTTGAGCCAAT+AGG | 0.393501 | 3.1:+82673679 | None:intergenic |
| CTTGGTGACACTGCTCAACT+TGG | 0.407645 | 3.1:-82674914 | MS.gene32792:CDS |
| GGAAGAGGATATGTTCTCTA+AGG | 0.414461 | 3.1:-82672727 | MS.gene32792:CDS |
| TATCATACCTTGAGCCAATA+GGG | 0.429202 | 3.1:+82673680 | None:intergenic |
| GTTACTCAAGTGGTTTCCAT+TGG | 0.431641 | 3.1:-82674978 | MS.gene32792:CDS |
| TTACTCAAGTGGTTTCCATT+GGG | 0.437213 | 3.1:-82674977 | MS.gene32792:CDS |
| CGGAGAGGTTCTTGAGTTGA+AGG | 0.449506 | 3.1:+82674867 | None:intergenic |
| ATAGTTTCATGGCTTATGCT+TGG | 0.449906 | 3.1:-82674932 | MS.gene32792:CDS |
| TATTGCTTAAGAGAGTTAGA+AGG | 0.452128 | 3.1:-82676648 | MS.gene32792:CDS |
| TTCCATTGGGACTTGTCGAT+CGG | 0.454350 | 3.1:-82674964 | MS.gene32792:CDS |
| CACCGTCGCGTGTTTGTTCA+AGG | 0.458373 | 3.1:-82676558 | MS.gene32792:CDS |
| GATGGCATCATATTGGCAAC+CGG | 0.459043 | 3.1:-82673719 | MS.gene32792:CDS |
| GTGCAAAATGCTGAATTTGA+TGG | 0.462235 | 3.1:-82676252 | MS.gene32792:CDS |
| TTGATGGTAAAATTGGTTGT+TGG | 0.471687 | 3.1:-82676236 | MS.gene32792:CDS |
| CACACAGTGGAATTCGTAGA+TGG | 0.480947 | 3.1:-82673758 | MS.gene32792:CDS |
| AAAAGTGGTGAAGAGTTTAG+AGG | 0.487823 | 3.1:-82676060 | MS.gene32792:CDS |
| TCTGAGGGGAATTCCATAAA+GGG | 0.494865 | 3.1:+82676366 | None:intergenic |
| AAAGTGGTGAAGAGTTTAGA+GGG | 0.496476 | 3.1:-82676059 | MS.gene32792:CDS |
| TGACACTGCTCAACTTGGGT+TGG | 0.497517 | 3.1:-82674909 | MS.gene32792:CDS |
| AATGTCATCAGCTATTCTCT+TGG | 0.503005 | 3.1:+82672599 | None:intergenic |
| TGGTTGTGGTAATTCTGGTA+TGG | 0.510440 | 3.1:-82676019 | MS.gene32792:CDS |
| ACAACAGTTCATAAAGTACT+TGG | 0.510479 | 3.1:-82676322 | MS.gene32792:CDS |
| TGTCCATGTGGTTACTCAAG+TGG | 0.513763 | 3.1:-82674988 | MS.gene32792:CDS |
| GATATGTTCTCTAAGGAAGA+TGG | 0.515584 | 3.1:-82672720 | MS.gene32792:CDS |
| CGTTGGTTGATCGTTGCGAC+CGG | 0.515903 | 3.1:-82676162 | MS.gene32792:CDS |
| CTACGGAATATGTTTGTCGT+TGG | 0.522172 | 3.1:-82676179 | MS.gene32792:CDS |
| CATACAAGTTTGTATAAAAG+TGG | 0.522680 | 3.1:-82676075 | MS.gene32792:CDS |
| GAAGGTGTAGATGAATTTGG+AGG | 0.528940 | 3.1:-82676108 | MS.gene32792:CDS |
| AAGGTGTAGATGAATTTGGA+GGG | 0.531621 | 3.1:-82676107 | MS.gene32792:CDS |
| TCGCGTGTTTGTTCAAGGAC+CGG | 0.536784 | 3.1:-82676553 | MS.gene32792:CDS |
| CTTCAACTCAAGAACCTCTC+CGG | 0.537129 | 3.1:-82674866 | MS.gene32792:CDS |
| GGAGAGGTTCTTGAGTTGAA+GGG | 0.547836 | 3.1:+82674868 | None:intergenic |
| TTGGTGACACTGCTCAACTT+GGG | 0.549242 | 3.1:-82674913 | MS.gene32792:CDS |
| GCTGTTGTGCCTAATATTGA+AGG | 0.549425 | 3.1:-82676126 | MS.gene32792:CDS |
| TATTCTCTTGGCATCCATAG+AGG | 0.550970 | 3.1:+82672611 | None:intergenic |
| GGGTATGTTGGGAAATCTGA+GGG | 0.551955 | 3.1:+82676351 | None:intergenic |
| CCATTTCCAAGTGGGTGGAA+AGG | 0.556864 | 3.1:-82672684 | MS.gene32792:CDS |
| CAACTTTCGGGTTGTCCATG+TGG | 0.556906 | 3.1:-82675000 | MS.gene32792:CDS |
| AACAGCTTCTGCATTCTCAC+CGG | 0.560263 | 3.1:+82676143 | None:intergenic |
| TTCCTAGCATCTCTCGTGGT+AGG | 0.560936 | 3.1:+82675026 | None:intergenic |
| GGTCCTGCTCCTACGATCAC+CGG | 0.561323 | 3.1:+82676534 | None:intergenic |
| TAGTAAAGGGGATGTAACTA+CGG | 0.564472 | 3.1:-82676196 | MS.gene32792:CDS |
| AGGTACGACCAAGCATAAAA+CGG | 0.569581 | 3.1:-82673790 | MS.gene32792:CDS |
| GGACCGGTGATCGTAGGAGC+AGG | 0.570039 | 3.1:-82676537 | MS.gene32792:CDS |
| CTATGAAGCCATTTCCAAGT+GGG | 0.571956 | 3.1:-82672692 | MS.gene32792:CDS |
| AGGTGTAGATGAATTTGGAG+GGG | 0.583926 | 3.1:-82676106 | MS.gene32792:CDS |
| CAAGAGAAGGAGTAGCATCA+TGG | 0.589521 | 3.1:+82675974 | None:intergenic |
| AGGGTATGTTGGGAAATCTG+AGG | 0.590255 | 3.1:+82676350 | None:intergenic |
| GTTCAAGGACCGGTGATCGT+AGG | 0.596331 | 3.1:-82676543 | MS.gene32792:CDS |
| AGGGTACCCACATCTAAGAC+AGG | 0.599272 | 3.1:+82674836 | None:intergenic |
| GAGAGGTTCTTGAGTTGAAG+GGG | 0.600506 | 3.1:+82674869 | None:intergenic |
| AAAACTCCTGTCTTAGATGT+GGG | 0.603155 | 3.1:-82674842 | MS.gene32792:CDS |
| TGAAGCCATTTCCAAGTGGG+TGG | 0.610400 | 3.1:-82672689 | MS.gene32792:CDS |
| CAATGTTCCCTATTGGCTCA+AGG | 0.610422 | 3.1:-82673687 | MS.gene32792:intron |
| TGCACTGTCTCATTAAACCG+TGG | 0.610645 | 3.1:+82676270 | None:intergenic |
| AACCGATCGACAAGTCCCAA+TGG | 0.612719 | 3.1:+82674962 | None:intergenic |
| GAATCTCGAACAACAAGAGA+AGG | 0.614342 | 3.1:+82675961 | None:intergenic |
| ACCCTTGCCAAAATTAAAGG+TGG | 0.619165 | 3.1:-82674818 | MS.gene32792:CDS |
| ATGAAGACGTAATCGATCGT+AGG | 0.621938 | 3.1:+82676413 | None:intergenic |
| GATCTTTCTAGTATTACACA+TGG | 0.634588 | 3.1:+82676468 | None:intergenic |
| CAGTGGAATTCGTAGATGGA+AGG | 0.636435 | 3.1:-82673754 | MS.gene32792:CDS |
| TTAGAAGCTGAAGCAAAGCA+TGG | 0.637004 | 3.1:-82672567 | MS.gene32792:CDS |
| GTCCTACCACGAGAGATGCT+AGG | 0.644002 | 3.1:-82675028 | MS.gene32792:CDS |
| CAACAAATCATCATCAACAA+CGG | 0.644186 | 3.1:-82676583 | MS.gene32792:CDS |
| GCAGCTGCTGCTAAACCAGA+AGG | 0.646911 | 3.1:+82676513 | None:intergenic |
| ACTAGAAAGATCTAATTGTG+TGG | 0.651949 | 3.1:-82676457 | MS.gene32792:CDS |
| GTCCTTGAACAAACACGCGA+CGG | 0.653290 | 3.1:+82676556 | None:intergenic |
| CCTATGAAGCCATTTCCAAG+TGG | 0.662153 | 3.1:-82672693 | MS.gene32792:CDS |
| AGTTGAAGGGGACCCAAACG+AGG | 0.670978 | 3.1:+82674881 | None:intergenic |
| AAACCACTTGAGTAACCACA+TGG | 0.674308 | 3.1:+82674985 | None:intergenic |
| GGTATGTTGGGAAATCTGAG+GGG | 0.693219 | 3.1:+82676352 | None:intergenic |
| ACGGTTAAAACGTCACACAG+TGG | 0.719614 | 3.1:-82673771 | MS.gene32792:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAATTATATTATTT+TGG | + | chr3.1:82673621-82673640 | None:intergenic | 0.0% |
| !! | ATAAATTATATAATATATGC+AGG | - | chr3.1:82676466-82676485 | MS.gene32792:CDS | 10.0% |
| !! | TGAATAAAAAATTCTAAATA+AGG | + | chr3.1:82673420-82673439 | None:intergenic | 10.0% |
| !!! | TATCATTATTTAATTTACTA+TGG | - | chr3.1:82674139-82674158 | MS.gene32792:intron | 10.0% |
| !!! | TCAAAATTACATTTTTTATT+GGG | + | chr3.1:82673661-82673680 | None:intergenic | 10.0% |
| !!! | TGTACTAAATAAATTTTATT+TGG | - | chr3.1:82676431-82676450 | MS.gene32792:CDS | 10.0% |
| !!! | TTCAAAATTACATTTTTTAT+TGG | + | chr3.1:82673662-82673681 | None:intergenic | 10.0% |
| !! | AAAACATAAAGGAAATAATT+AGG | + | chr3.1:82674868-82674887 | None:intergenic | 15.0% |
| !! | AAATAAGAAACCTAAAAAAT+TGG | + | chr3.1:82673589-82673608 | None:intergenic | 15.0% |
| !! | AAATGGAAATTAATTAAACT+AGG | + | chr3.1:82673566-82673585 | None:intergenic | 15.0% |
| !! | AAATTAATTAAACTAGGTTT+GGG | + | chr3.1:82673560-82673579 | None:intergenic | 15.0% |
| !! | AATCTACTGAAAATAATAAT+GGG | + | chr3.1:82675321-82675340 | None:intergenic | 15.0% |
| !! | AGCTAATCAAAAAAAAAAAT+TGG | - | chr3.1:82675068-82675087 | MS.gene32792:intron | 15.0% |
| !! | ATAGTACAATAATTAAATGA+TGG | - | chr3.1:82676385-82676404 | MS.gene32792:CDS | 15.0% |
| !! | GAAAAAAATTAAAGTTGTAT+TGG | + | chr3.1:82675743-82675762 | None:intergenic | 15.0% |
| !! | TAATCTACTGAAAATAATAA+TGG | + | chr3.1:82675322-82675341 | None:intergenic | 15.0% |
| !! | TATAAATAAGAAACTAATAG+TGG | - | chr3.1:82674840-82674859 | MS.gene32792:CDS | 15.0% |
| !! | TTCAAATTTCAATGAAATAT+TGG | + | chr3.1:82674600-82674619 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr3.1:82675703-82675722 | None:intergenic | 15.0% |
| !!! | TTTTATAAATATTTTCTCGA+TGG | - | chr3.1:82674806-82674825 | MS.gene32792:intron | 15.0% |
| !!! | TTTTTTATTCAATTTGATGA+AGG | - | chr3.1:82673429-82673448 | MS.gene32792:intron | 15.0% |
| !!! | TTTTTTGAACAAATCTATTT+CGG | + | chr3.1:82673801-82673820 | None:intergenic | 15.0% |
| !! | AAAAAAACCTAAAAATCGAT+TGG | - | chr3.1:82675389-82675408 | MS.gene32792:intron | 20.0% |
| !! | AAATGGAATGAAATAATCAT+TGG | + | chr3.1:82675879-82675898 | None:intergenic | 20.0% |
| !! | AATTGTGACCAAATTAAAAT+AGG | + | chr3.1:82676319-82676338 | None:intergenic | 20.0% |
| !! | ATATATAAAAAAGAGAGAGA+AGG | + | chr3.1:82674913-82674932 | None:intergenic | 20.0% |
| !! | ATTAAAAATCAAATTTGTGG+AGG | + | chr3.1:82673693-82673712 | None:intergenic | 20.0% |
| !! | ATTGTGACCAAATTAAAATA+GGG | + | chr3.1:82676318-82676337 | None:intergenic | 20.0% |
| !! | ATTTCAGATATAAAGATGTT+TGG | - | chr3.1:82676336-82676355 | MS.gene32792:CDS | 20.0% |
| !! | GAAATTAATTAAACTAGGTT+TGG | + | chr3.1:82673561-82673580 | None:intergenic | 20.0% |
| !! | GAGATTAAAAATCAAATTTG+TGG | + | chr3.1:82673696-82673715 | None:intergenic | 20.0% |
| !! | TACAAAACAACCAATTAAAA+AGG | + | chr3.1:82673510-82673529 | None:intergenic | 20.0% |
| !!! | ACTAATTTGATTTGATAGAA+AGG | + | chr3.1:82674450-82674469 | None:intergenic | 20.0% |
| !!! | AGAAGAACATTTTTCTTAAA+GGG | + | chr3.1:82676062-82676081 | None:intergenic | 20.0% |
| !!! | ATGGTTAATTTTGTAAATGA+AGG | - | chr3.1:82674158-82674177 | MS.gene32792:intron | 20.0% |
| !!! | ATTTCCATTTCCAATTTTTT+AGG | - | chr3.1:82673576-82673595 | MS.gene32792:intron | 20.0% |
| !!! | ATTTCTACTTCCTTTTTAAT+TGG | - | chr3.1:82673497-82673516 | MS.gene32792:intron | 20.0% |
| !!! | CTAATTTGATTTGATAGAAA+GGG | + | chr3.1:82674449-82674468 | None:intergenic | 20.0% |
| !!! | GAGAAGAAAAAATTGTTTTA+TGG | - | chr3.1:82673335-82673354 | MS.gene32792:intron | 20.0% |
| !!! | TCCATTTCTTTATTTTTTCT+TGG | - | chr3.1:82674965-82674984 | MS.gene32792:CDS | 20.0% |
| !!! | TGAAGAGTTTTAATAGTAAA+GGG | - | chr3.1:82673005-82673024 | MS.gene32792:intron | 20.0% |
| !!! | TGTCTTTTTCTTATAAAGTA+GGG | - | chr3.1:82675830-82675849 | MS.gene32792:intron | 20.0% |
| !!! | TTATAACTGTCTTTTGAAAA+TGG | - | chr3.1:82673300-82673319 | MS.gene32792:intron | 20.0% |
| !!! | TTCATTGTTTTCATGAATAA+AGG | + | chr3.1:82672608-82672627 | None:intergenic | 20.0% |
| !!! | TTGAAGAGTTTTAATAGTAA+AGG | - | chr3.1:82673004-82673023 | MS.gene32792:intron | 20.0% |
| !!! | TTGTCTTTTTCTTATAAAGT+AGG | - | chr3.1:82675829-82675848 | MS.gene32792:intron | 20.0% |
| !!! | TTTTTAATCTCACAAATTCT+TGG | - | chr3.1:82673705-82673724 | MS.gene32792:CDS | 20.0% |
| ! | AAAAGGAAGTAGAAATCAAA+AGG | + | chr3.1:82673493-82673512 | None:intergenic | 25.0% |
| ! | AAATTATGTGAGAGAAAAGT+TGG | + | chr3.1:82675792-82675811 | None:intergenic | 25.0% |
| ! | AATCATTAACATGTGTCTTA+AGG | + | chr3.1:82675622-82675641 | None:intergenic | 25.0% |
| ! | ATGTGATTTCAATCAAATCA+TGG | - | chr3.1:82675005-82675024 | MS.gene32792:CDS | 25.0% |
| ! | CATACAAGTTTGTATAAAAG+TGG | - | chr3.1:82673139-82673158 | MS.gene32792:intron | 25.0% |
| ! | CCTTCAAAAAAAAAAAGCTT+TGG | + | chr3.1:82673375-82673394 | None:intergenic | 25.0% |
| ! | GAAACCTAAAAAATTGGAAA+TGG | + | chr3.1:82673583-82673602 | None:intergenic | 25.0% |
| ! | GCCAAGAAAAAATAAAGAAA+TGG | + | chr3.1:82674969-82674988 | None:intergenic | 25.0% |
| ! | TATATAATATATGCAGGAAG+AGG | - | chr3.1:82676472-82676491 | MS.gene32792:CDS | 25.0% |
| ! | TCCTTAAAAATTTCCACTTT+AGG | - | chr3.1:82675998-82676017 | MS.gene32792:CDS | 25.0% |
| ! | TTCAGTAGATTAGATTGTTA+GGG | - | chr3.1:82675330-82675349 | MS.gene32792:intron | 25.0% |
| ! | TTGATAGAAAGGGAAATATA+GGG | + | chr3.1:82674439-82674458 | None:intergenic | 25.0% |
| ! | TTTCAGTAGATTAGATTGTT+AGG | - | chr3.1:82675329-82675348 | MS.gene32792:intron | 25.0% |
| ! | TTTGATAGAAAGGGAAATAT+AGG | + | chr3.1:82674440-82674459 | None:intergenic | 25.0% |
| !! | AAAAGTTGGAGTATTTATTG+AGG | + | chr3.1:82675778-82675797 | None:intergenic | 25.0% |
| !! | AAAGTTGGAGTATTTATTGA+GGG | + | chr3.1:82675777-82675796 | None:intergenic | 25.0% |
| !! | ACCTAAAGTGGAAATTTTTA+AGG | + | chr3.1:82676002-82676021 | None:intergenic | 25.0% |
| !! | ATAAGAGAAATGTTAACTTG+TGG | + | chr3.1:82675275-82675294 | None:intergenic | 25.0% |
| !! | ATCATTTTATTGCACTTTCT+TGG | - | chr3.1:82673869-82673888 | MS.gene32792:intron | 25.0% |
| !! | CAACATAATGTTTCTATCTT+TGG | - | chr3.1:82675227-82675246 | MS.gene32792:intron | 25.0% |
| !! | GAGAAGAACATTTTTCTTAA+AGG | + | chr3.1:82676063-82676082 | None:intergenic | 25.0% |
| !! | GTCTTTTTCTTATAAAGTAG+GGG | - | chr3.1:82675831-82675850 | MS.gene32792:intron | 25.0% |
| !!! | AAGCGACACTAATTTTAAAA+CGG | + | chr3.1:82675677-82675696 | None:intergenic | 25.0% |
| !!! | AGGGAATTAATAGTTTTGAA+AGG | - | chr3.1:82676278-82676297 | MS.gene32792:CDS | 25.0% |
| !!! | ATGTTGATTCATGTACTAAA+TGG | - | chr3.1:82673920-82673939 | MS.gene32792:intron | 25.0% |
| !!! | CCAAAGCTTTTTTTTTTTGA+AGG | - | chr3.1:82673372-82673391 | MS.gene32792:intron | 25.0% |
| !!! | GAAGAGTTTTAATAGTAAAG+GGG | - | chr3.1:82673006-82673025 | MS.gene32792:intron | 25.0% |
| !!! | GAGATATTTTAACTGAGATT+TGG | - | chr3.1:82674528-82674547 | MS.gene32792:intron | 25.0% |
| !!! | GCAATTTCCCTATTTTAATT+TGG | - | chr3.1:82676308-82676327 | MS.gene32792:CDS | 25.0% |
| !!! | GGGAATTAATAGTTTTGAAA+GGG | - | chr3.1:82676279-82676298 | MS.gene32792:CDS | 25.0% |
| !!! | TTATGAACTGTTGTTTTGAA+GGG | + | chr3.1:82672886-82672905 | None:intergenic | 25.0% |
| !!! | TTGTTGTTTTAGAGTATGTT+CGG | + | chr3.1:82674679-82674698 | None:intergenic | 25.0% |
| !!! | TTTATGAACTGTTGTTTTGA+AGG | + | chr3.1:82672887-82672906 | None:intergenic | 25.0% |
| AAAACACCCAGAAAAATCAT+GGG | + | chr3.1:82673996-82674015 | None:intergenic | 30.0% | |
| AAATGTTAACTTATGCCCTT+AGG | + | chr3.1:82676039-82676058 | None:intergenic | 30.0% | |
| AATGTTAACTTATGCCCTTA+GGG | + | chr3.1:82676038-82676057 | None:intergenic | 30.0% | |
| AATTAAAGGTGGACACATTA+AGG | - | chr3.1:82674407-82674426 | MS.gene32792:intron | 30.0% | |
| ACAAATTCTTGGATTCTCAT+AGG | - | chr3.1:82673716-82673735 | MS.gene32792:CDS | 30.0% | |
| ACTAGAAAGATCTAATTGTG+TGG | - | chr3.1:82672757-82672776 | MS.gene32792:intron | 30.0% | |
| AGTTAACTCATGTTGAGTTA+AGG | - | chr3.1:82676258-82676277 | MS.gene32792:CDS | 30.0% | |
| AGTTCAATCACTTATTACGT+TGG | + | chr3.1:82676186-82676205 | None:intergenic | 30.0% | |
| ATCAGATGTAATGTGAGATT+TGG | - | chr3.1:82674727-82674746 | MS.gene32792:intron | 30.0% | |
| ATGCTAGGAAAATCAACTTT+CGG | - | chr3.1:82674201-82674220 | MS.gene32792:intron | 30.0% | |
| ATTCTGTGAATTACCCTTTA+TGG | - | chr3.1:82672835-82672854 | MS.gene32792:intron | 30.0% | |
| CAACAAATCATCATCAACAA+CGG | - | chr3.1:82672631-82672650 | MS.gene32792:CDS | 30.0% | |
| GCAAAGCAAGAATTAAACAA+GGG | + | chr3.1:82673756-82673775 | None:intergenic | 30.0% | |
| GCACTTGATGTAAAACATAA+AGG | + | chr3.1:82674879-82674898 | None:intergenic | 30.0% | |
| GTATTTATTGAGGGTAAAGT+TGG | + | chr3.1:82675768-82675787 | None:intergenic | 30.0% | |
| GTTAACTCATGTTGAGTTAA+GGG | - | chr3.1:82676259-82676278 | MS.gene32792:CDS | 30.0% | |
| TAACTCTTGTTCAACATTCT+TGG | + | chr3.1:82676243-82676262 | None:intergenic | 30.0% | |
| TATTGCTTAAGAGAGTTAGA+AGG | - | chr3.1:82672566-82672585 | MS.gene32792:CDS | 30.0% | |
| TCAGATGTAATGTGAGATTT+GGG | - | chr3.1:82674728-82674747 | MS.gene32792:intron | 30.0% | |
| TCATCTACACCTTCAATATT+AGG | + | chr3.1:82673100-82673119 | None:intergenic | 30.0% | |
| TGCAAAGCAAGAATTAAACA+AGG | + | chr3.1:82673757-82673776 | None:intergenic | 30.0% | |
| ! | ACAACAGTTCATAAAGTACT+TGG | - | chr3.1:82672892-82672911 | MS.gene32792:intron | 30.0% |
| ! | ATTGAAGGTGTAGATGAATT+TGG | - | chr3.1:82673103-82673122 | MS.gene32792:intron | 30.0% |
| ! | GATCTTTCTAGTATTACACA+TGG | + | chr3.1:82672749-82672768 | None:intergenic | 30.0% |
| ! | GCTGAATTTGATGGTAAAAT+TGG | - | chr3.1:82672971-82672990 | MS.gene32792:intron | 30.0% |
| ! | GGTAATTCACAGAATTGTTT+TGG | + | chr3.1:82672830-82672849 | None:intergenic | 30.0% |
| ! | TAACTTTCCTCGACATTTTT+CGG | - | chr3.1:82676120-82676139 | MS.gene32792:CDS | 30.0% |
| ! | TGAACTGATCTTAAAAGTGT+CGG | - | chr3.1:82676200-82676219 | MS.gene32792:CDS | 30.0% |
| ! | TTGATGGTAAAATTGGTTGT+TGG | - | chr3.1:82672978-82672997 | MS.gene32792:intron | 30.0% |
| !! | AATGTGTCCACCTTTAATTT+TGG | + | chr3.1:82674406-82674425 | None:intergenic | 30.0% |
| !! | GAATTTTGATGGCATCATAT+TGG | - | chr3.1:82675488-82675507 | MS.gene32792:intron | 30.0% |
| !!! | GACACTAATTTTAAAACGGA+GGG | + | chr3.1:82675673-82675692 | None:intergenic | 30.0% |
| AAAAACTCCTGTCTTAGATG+TGG | - | chr3.1:82674371-82674390 | MS.gene32792:intron | 35.0% | |
| AAAACTCCTGTCTTAGATGT+GGG | - | chr3.1:82674372-82674391 | MS.gene32792:intron | 35.0% | |
| AAAAGTGGTGAAGAGTTTAG+AGG | - | chr3.1:82673154-82673173 | MS.gene32792:intron | 35.0% | |
| AAAGTGGTGAAGAGTTTAGA+GGG | - | chr3.1:82673155-82673174 | MS.gene32792:intron | 35.0% | |
| AAGGTGTAGATGAATTTGGA+GGG | - | chr3.1:82673107-82673126 | MS.gene32792:intron | 35.0% | |
| AATGTCATCAGCTATTCTCT+TGG | + | chr3.1:82676618-82676637 | None:intergenic | 35.0% | |
| ACAAAAGCAATGTTCCCTAT+TGG | - | chr3.1:82675520-82675539 | MS.gene32792:intron | 35.0% | |
| ATAGTTTCATGGCTTATGCT+TGG | - | chr3.1:82674282-82674301 | MS.gene32792:intron | 35.0% | |
| ATATCATACCTTGAGCCAAT+AGG | + | chr3.1:82675538-82675557 | None:intergenic | 35.0% | |
| ATGAATTTGGAGGGGTTATA+AGG | - | chr3.1:82673116-82673135 | MS.gene32792:intron | 35.0% | |
| ATTTCGGAACTTGAAACCTA+TGG | + | chr3.1:82673785-82673804 | None:intergenic | 35.0% | |
| CTAATTGTGTGGCTTCATTA+TGG | - | chr3.1:82672768-82672787 | MS.gene32792:intron | 35.0% | |
| GAAAACACCCAGAAAAATCA+TGG | + | chr3.1:82673997-82674016 | None:intergenic | 35.0% | |
| GTCAAACCAAAAAAAGCAGT+GGG | + | chr3.1:82674083-82674102 | None:intergenic | 35.0% | |
| GTCAAGCCTAAGAATGATTA+TGG | - | chr3.1:82674569-82674588 | MS.gene32792:intron | 35.0% | |
| GTGCAAAATGCTGAATTTGA+TGG | - | chr3.1:82672962-82672981 | MS.gene32792:intron | 35.0% | |
| GTGTTGCCATAATCATTCTT+AGG | + | chr3.1:82674578-82674597 | None:intergenic | 35.0% | |
| TAGTAAAGGGGATGTAACTA+CGG | - | chr3.1:82673018-82673037 | MS.gene32792:intron | 35.0% | |
| TATCATACCTTGAGCCAATA+GGG | + | chr3.1:82675537-82675556 | None:intergenic | 35.0% | |
| TCAAACCAAAAAAAGCAGTG+GGG | + | chr3.1:82674082-82674101 | None:intergenic | 35.0% | |
| TCTTATAAAGCTAGCTAGCA+TGG | + | chr3.1:82674510-82674529 | None:intergenic | 35.0% | |
| TGCTAGGAAAATCAACTTTC+GGG | - | chr3.1:82674202-82674221 | MS.gene32792:intron | 35.0% | |
| TGTCAAACCAAAAAAAGCAG+TGG | + | chr3.1:82674084-82674103 | None:intergenic | 35.0% | |
| TTACTCAAGTGGTTTCCATT+GGG | - | chr3.1:82674237-82674256 | MS.gene32792:intron | 35.0% | |
| TTATTTGCATCATGCTTGGT+GGG | - | chr3.1:82675291-82675310 | MS.gene32792:intron | 35.0% | |
| TTGGCACACAGATTAAGAAA+TGG | + | chr3.1:82675896-82675915 | None:intergenic | 35.0% | |
| TTTCGGAACTTGAAACCTAT+GGG | + | chr3.1:82673784-82673803 | None:intergenic | 35.0% | |
| ! | ATGCGGTAGGTTTTACAAAA+AGG | - | chr3.1:82676567-82676586 | MS.gene32792:CDS | 35.0% |
| ! | CCTAAAAATCGATTGGTCAT+TGG | - | chr3.1:82675396-82675415 | MS.gene32792:intron | 35.0% |
| ! | GAAGATTATGCAGAGAGTTT+TGG | - | chr3.1:82672914-82672933 | MS.gene32792:intron | 35.0% |
| ! | GATATGTTCTCTAAGGAAGA+TGG | - | chr3.1:82676494-82676513 | MS.gene32792:CDS | 35.0% |
| ! | GTAATGTGAGATTTGGGTTA+TGG | - | chr3.1:82674734-82674753 | MS.gene32792:intron | 35.0% |
| ! | GTTTAGAGGGAAGAAAGTTT+TGG | - | chr3.1:82673168-82673187 | MS.gene32792:intron | 35.0% |
| ! | TCTCTTATTTGCATCATGCT+TGG | - | chr3.1:82675287-82675306 | MS.gene32792:intron | 35.0% |
| ! | TGCGGTAGGTTTTACAAAAA+GGG | - | chr3.1:82676568-82676587 | MS.gene32792:CDS | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr3.1:82675922-82675941 | MS.gene32792:intron | 35.0% |
| !! | ATCTAAGACAGGAGTTTTTC+CGG | + | chr3.1:82674370-82674389 | None:intergenic | 35.0% |
| !! | ATGCAGAGAGTTTTGGTATT+AGG | - | chr3.1:82672921-82672940 | MS.gene32792:intron | 35.0% |
| !! | ATTCTTAACTTGTGCCCAAA+GGG | + | chr3.1:82675128-82675147 | None:intergenic | 35.0% |
| !! | CCAATGACCAATCGATTTTT+AGG | + | chr3.1:82675399-82675418 | None:intergenic | 35.0% |
| !! | CGTTTTAACCGTTTTATGCT+TGG | + | chr3.1:82675435-82675454 | None:intergenic | 35.0% |
| !! | TCCACCTTTAATTTTGGCAA+GGG | + | chr3.1:82674400-82674419 | None:intergenic | 35.0% |
| !! | TTCAAAATGAGTGTCGCTTT+AGG | + | chr3.1:82675921-82675940 | None:intergenic | 35.0% |
| !! | TTCTCTTGTTGTTCGAGATT+CGG | - | chr3.1:82673255-82673274 | MS.gene32792:intron | 35.0% |
| !!! | AAAGTTTTGGTTGTTGGTTG+TGG | - | chr3.1:82673181-82673200 | MS.gene32792:intron | 35.0% |
| !!! | CGACACTAATTTTAAAACGG+AGG | + | chr3.1:82675674-82675693 | None:intergenic | 35.0% |
| !!! | GTTGTTTTGAAGGGTATGTT+GGG | + | chr3.1:82672877-82672896 | None:intergenic | 35.0% |
| !!! | TAACATTTTTTAAGTGCGCG+TGG | + | chr3.1:82676362-82676381 | None:intergenic | 35.0% |
| !!! | TACGCTGCAACTTTTAAGAT+CGG | - | chr3.1:82676155-82676174 | MS.gene32792:CDS | 35.0% |
| !!! | TGTTGTTTTGAAGGGTATGT+TGG | + | chr3.1:82672878-82672897 | None:intergenic | 35.0% |
| AAAAAAAGCAGTGGGGGAAA+AGG | + | chr3.1:82674075-82674094 | None:intergenic | 40.0% | |
| AAACCACTTGAGTAACCACA+TGG | + | chr3.1:82674232-82674251 | None:intergenic | 40.0% | |
| ACATGTTAGGGAACCTAAAG+TGG | + | chr3.1:82676014-82676033 | None:intergenic | 40.0% | |
| ACCCTTGCCAAAATTAAAGG+TGG | - | chr3.1:82674396-82674415 | MS.gene32792:intron | 40.0% | |
| AGGTACGACCAAGCATAAAA+CGG | - | chr3.1:82675424-82675443 | MS.gene32792:intron | 40.0% | |
| AGGTGTAGATGAATTTGGAG+GGG | - | chr3.1:82673108-82673127 | MS.gene32792:intron | 40.0% | |
| ATCTGAGGGGAATTCCATAA+AGG | + | chr3.1:82672852-82672871 | None:intergenic | 40.0% | |
| ATGAAGACGTAATCGATCGT+AGG | + | chr3.1:82672804-82672823 | None:intergenic | 40.0% | |
| CAAACCAAAAAAAGCAGTGG+GGG | + | chr3.1:82674081-82674100 | None:intergenic | 40.0% | |
| CTACGGAATATGTTTGTCGT+TGG | - | chr3.1:82673035-82673054 | MS.gene32792:intron | 40.0% | |
| CTATGAAGCCATTTCCAAGT+GGG | - | chr3.1:82676522-82676541 | MS.gene32792:CDS | 40.0% | |
| CTTATTTGCATCATGCTTGG+TGG | - | chr3.1:82675290-82675309 | MS.gene32792:intron | 40.0% | |
| GAAGCAAAGCATGGATCATA+AGG | - | chr3.1:82676656-82676675 | MS.gene32792:CDS | 40.0% | |
| GAATCTCGAACAACAAGAGA+AGG | + | chr3.1:82673256-82673275 | None:intergenic | 40.0% | |
| GCTGTTGTGCCTAATATTGA+AGG | - | chr3.1:82673088-82673107 | MS.gene32792:intron | 40.0% | |
| GGAAGAGGATATGTTCTCTA+AGG | - | chr3.1:82676487-82676506 | MS.gene32792:CDS | 40.0% | |
| GGTACCCTTGCCAAAATTAA+AGG | - | chr3.1:82674393-82674412 | MS.gene32792:intron | 40.0% | |
| GGTTCTTGCTCATAGTTTCA+TGG | - | chr3.1:82674271-82674290 | MS.gene32792:intron | 40.0% | |
| GTTACTCAAGTGGTTTCCAT+TGG | - | chr3.1:82674236-82674255 | MS.gene32792:intron | 40.0% | |
| TATTCTCTTGGCATCCATAG+AGG | + | chr3.1:82676606-82676625 | None:intergenic | 40.0% | |
| TATTGGGAGATAGTGCTTGA+TGG | + | chr3.1:82673645-82673664 | None:intergenic | 40.0% | |
| TCTGAGGGGAATTCCATAAA+GGG | + | chr3.1:82672851-82672870 | None:intergenic | 40.0% | |
| TGGTTGTGGTAATTCTGGTA+TGG | - | chr3.1:82673195-82673214 | MS.gene32792:intron | 40.0% | |
| TTAGAAGCTGAAGCAAAGCA+TGG | - | chr3.1:82676647-82676666 | MS.gene32792:CDS | 40.0% | |
| TTTACAAAAAGGGGACTGCA+AGG | - | chr3.1:82676578-82676597 | MS.gene32792:CDS | 40.0% | |
| ! | ACCACACCCATGATTTTTCT+GGG | - | chr3.1:82673987-82674006 | MS.gene32792:intron | 40.0% |
| ! | ATCATGGACGAAAGCACAAT+TGG | - | chr3.1:82675021-82675040 | MS.gene32792:CDS | 40.0% |
| ! | CTGAGATTTGGTCATGCAAA+TGG | - | chr3.1:82674540-82674559 | MS.gene32792:intron | 40.0% |
| ! | GAAGGTGTAGATGAATTTGG+AGG | - | chr3.1:82673106-82673125 | MS.gene32792:intron | 40.0% |
| ! | GCGGTAGGTTTTACAAAAAG+GGG | - | chr3.1:82676569-82676588 | MS.gene32792:CDS | 40.0% |
| ! | GGAAGGTCAGAGAATTTTGA+TGG | - | chr3.1:82675477-82675496 | MS.gene32792:intron | 40.0% |
| ! | GTTGTTGGTTGTGGTAATTC+TGG | - | chr3.1:82673190-82673209 | MS.gene32792:intron | 40.0% |
| ! | TTTTTACCTTTCCACCCACT+TGG | + | chr3.1:82676539-82676558 | None:intergenic | 40.0% |
| !! | AATGTTAACTTGTGGCCTCA+AGG | + | chr3.1:82675267-82675286 | None:intergenic | 40.0% |
| !! | AGAGTTTTGGTATTAGGCCA+CGG | - | chr3.1:82672927-82672946 | MS.gene32792:intron | 40.0% |
| !! | GATTCTTAACTTGTGCCCAA+AGG | + | chr3.1:82675129-82675148 | None:intergenic | 40.0% |
| !! | GGGAACATTGCTTTTGTAAC+CGG | + | chr3.1:82675517-82675536 | None:intergenic | 40.0% |
| !! | GTCCACCTTTAATTTTGGCA+AGG | + | chr3.1:82674401-82674420 | None:intergenic | 40.0% |
| !! | GTTTCTTAACTTGTGCCTTG+AGG | - | chr3.1:82675249-82675268 | MS.gene32792:intron | 40.0% |
| !!! | ATGGTAGCGCTAGTTTTAGT+TGG | - | chr3.1:82674753-82674772 | MS.gene32792:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr3.1:82675926-82675945 | MS.gene32792:intron | 40.0% |
| !!! | GGGAAGAAAGTTTTGGTTGT+TGG | - | chr3.1:82673175-82673194 | MS.gene32792:intron | 40.0% |
| !!! | TAGCGCTAGTTTTAGTTGGT+TGG | - | chr3.1:82674757-82674776 | MS.gene32792:intron | 40.0% |
| !!! | TTTTCCCCCACTGCTTTTTT+TGG | - | chr3.1:82674074-82674093 | MS.gene32792:intron | 40.0% |
| AACAGCTTCTGCATTCTCAC+CGG | + | chr3.1:82673074-82673093 | None:intergenic | 45.0% | |
| ACCCAGAAAAATCATGGGTG+TGG | + | chr3.1:82673991-82674010 | None:intergenic | 45.0% | |
| ACGGTTAAAACGTCACACAG+TGG | - | chr3.1:82675443-82675462 | MS.gene32792:intron | 45.0% | |
| ACTCATGCCGAAAAATGTCG+AGG | + | chr3.1:82676130-82676149 | None:intergenic | 45.0% | |
| AGGGTATGTTGGGAAATCTG+AGG | + | chr3.1:82672867-82672886 | None:intergenic | 45.0% | |
| ATTCTCAAGCATGCGCAACA+TGG | - | chr3.1:82673892-82673911 | MS.gene32792:intron | 45.0% | |
| CAAGAGAAGGAGTAGCATCA+TGG | + | chr3.1:82673243-82673262 | None:intergenic | 45.0% | |
| CACACAGTGGAATTCGTAGA+TGG | - | chr3.1:82675456-82675475 | MS.gene32792:intron | 45.0% | |
| CAGAAAAATCATGGGTGTGG+TGG | + | chr3.1:82673988-82674007 | None:intergenic | 45.0% | |
| CAGTGGAATTCGTAGATGGA+AGG | - | chr3.1:82675460-82675479 | MS.gene32792:intron | 45.0% | |
| CCACTTGGAAATGGCTTCAT+AGG | + | chr3.1:82676524-82676543 | None:intergenic | 45.0% | |
| CCTATGAAGCCATTTCCAAG+TGG | - | chr3.1:82676521-82676540 | MS.gene32792:CDS | 45.0% | |
| CTTCAACTCAAGAACCTCTC+CGG | - | chr3.1:82674348-82674367 | MS.gene32792:intron | 45.0% | |
| GATGGCATCATATTGGCAAC+CGG | - | chr3.1:82675495-82675514 | MS.gene32792:intron | 45.0% | |
| GGGTATGTTGGGAAATCTGA+GGG | + | chr3.1:82672866-82672885 | None:intergenic | 45.0% | |
| GGTATGTTGGGAAATCTGAG+GGG | + | chr3.1:82672865-82672884 | None:intergenic | 45.0% | |
| TGCACTGTCTCATTAAACCG+TGG | + | chr3.1:82672947-82672966 | None:intergenic | 45.0% | |
| TGTCCATGTGGTTACTCAAG+TGG | - | chr3.1:82674226-82674245 | MS.gene32792:intron | 45.0% | |
| TTCCATTGGGACTTGTCGAT+CGG | - | chr3.1:82674250-82674269 | MS.gene32792:intron | 45.0% | |
| TTCCCTAACATGTGCCCTAA+GGG | - | chr3.1:82676021-82676040 | MS.gene32792:CDS | 45.0% | |
| TTCTCAAGCATGCGCAACAT+GGG | - | chr3.1:82673893-82673912 | MS.gene32792:intron | 45.0% | |
| ! | CACCACACCCATGATTTTTC+TGG | - | chr3.1:82673986-82674005 | MS.gene32792:intron | 45.0% |
| ! | GATTTTCCTAGCATCTCTCG+TGG | + | chr3.1:82674195-82674214 | None:intergenic | 45.0% |
| ! | TCGATTGGTCATTGGTGTGT+AGG | - | chr3.1:82675404-82675423 | MS.gene32792:intron | 45.0% |
| ! | TGTTTTCCCCACATAGAGCA+TGG | - | chr3.1:82674010-82674029 | MS.gene32792:intron | 45.0% |
| ! | TTGGTGACACTGCTCAACTT+GGG | - | chr3.1:82674301-82674320 | MS.gene32792:intron | 45.0% |
| !! | AGTGTTGACTTGTGCCCTTT+GGG | - | chr3.1:82675111-82675130 | MS.gene32792:intron | 45.0% |
| !! | ATGAGTGTCGCTTTAGGCTT+TGG | + | chr3.1:82675915-82675934 | None:intergenic | 45.0% |
| !! | CAATGTTCCCTATTGGCTCA+AGG | - | chr3.1:82675527-82675546 | MS.gene32792:intron | 45.0% |
| !! | GAGAGGTTCTTGAGTTGAAG+GGG | + | chr3.1:82674348-82674367 | None:intergenic | 45.0% |
| !! | GGAGAGGTTCTTGAGTTGAA+GGG | + | chr3.1:82674349-82674368 | None:intergenic | 45.0% |
| !! | TAGTGTTGACTTGTGCCCTT+TGG | - | chr3.1:82675110-82675129 | MS.gene32792:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr3.1:82675925-82675944 | MS.gene32792:intron | 45.0% |
| AACCGATCGACAAGTCCCAA+TGG | + | chr3.1:82674255-82674274 | None:intergenic | 50.0% | |
| ATGCCCTTAGGGCACATGTT+AGG | + | chr3.1:82676027-82676046 | None:intergenic | 50.0% | |
| CCATTTCCAAGTGGGTGGAA+AGG | - | chr3.1:82676530-82676549 | MS.gene32792:CDS | 50.0% | |
| CCTTTCCACCCACTTGGAAA+TGG | + | chr3.1:82676533-82676552 | None:intergenic | 50.0% | |
| CTTGCTTTGCATGCACCCAT+AGG | - | chr3.1:82673766-82673785 | MS.gene32792:CDS | 50.0% | |
| GCCTAATGTTGTTGCAGGCT+AGG | + | chr3.1:82674036-82674055 | None:intergenic | 50.0% | |
| GCCTAGCCTGCAACAACATT+AGG | - | chr3.1:82674032-82674051 | MS.gene32792:intron | 50.0% | |
| GTCCTTGAACAAACACGCGA+CGG | + | chr3.1:82672661-82672680 | None:intergenic | 50.0% | |
| GTTCCCTAACATGTGCCCTA+AGG | - | chr3.1:82676020-82676039 | MS.gene32792:CDS | 50.0% | |
| TCGCGTGTTTGTTCAAGGAC+CGG | - | chr3.1:82672661-82672680 | MS.gene32792:CDS | 50.0% | |
| TGAAGCCATTTCCAAGTGGG+TGG | - | chr3.1:82676525-82676544 | MS.gene32792:CDS | 50.0% | |
| TGACACTGCTCAACTTGGGT+TGG | - | chr3.1:82674305-82674324 | MS.gene32792:intron | 50.0% | |
| TGCCCTTAGGGCACATGTTA+GGG | + | chr3.1:82676026-82676045 | None:intergenic | 50.0% | |
| TGGCTGCCTAATGTTGTTGC+AGG | + | chr3.1:82674041-82674060 | None:intergenic | 50.0% | |
| TTCCTAGCATCTCTCGTGGT+AGG | + | chr3.1:82674191-82674210 | None:intergenic | 50.0% | |
| ! | AGACAGGAGTTTTTCCGGAG+AGG | + | chr3.1:82674365-82674384 | None:intergenic | 50.0% |
| ! | AGGGTACCCACATCTAAGAC+AGG | + | chr3.1:82674381-82674400 | None:intergenic | 50.0% |
| ! | CTTGGTGACACTGCTCAACT+TGG | - | chr3.1:82674300-82674319 | MS.gene32792:intron | 50.0% |
| ! | GGGAAAAGGTACGAGGACTT+TGG | + | chr3.1:82674061-82674080 | None:intergenic | 50.0% |
| !! | CAACTTTCGGGTTGTCCATG+TGG | - | chr3.1:82674214-82674233 | MS.gene32792:intron | 50.0% |
| !! | CGGAGAGGTTCTTGAGTTGA+AGG | + | chr3.1:82674350-82674369 | None:intergenic | 50.0% |
| AGGCTAGGCCATGCTCTATG+TGG | + | chr3.1:82674021-82674040 | None:intergenic | 55.0% | |
| AGTTGAAGGGGACCCAAACG+AGG | + | chr3.1:82674336-82674355 | None:intergenic | 55.0% | |
| ATCGTAGGAGCAGGACCTTC+TGG | - | chr3.1:82672686-82672705 | MS.gene32792:CDS | 55.0% | |
| CACCGTCGCGTGTTTGTTCA+AGG | - | chr3.1:82672656-82672675 | MS.gene32792:CDS | 55.0% | |
| GCAGCTGCTGCTAAACCAGA+AGG | + | chr3.1:82672704-82672723 | None:intergenic | 55.0% | |
| GCTAGGCCATGCTCTATGTG+GGG | + | chr3.1:82674019-82674038 | None:intergenic | 55.0% | |
| GGCTAGGCCATGCTCTATGT+GGG | + | chr3.1:82674020-82674039 | None:intergenic | 55.0% | |
| GGGTTGGATCGTCCTCGTTT+GGG | - | chr3.1:82674321-82674340 | MS.gene32792:intron | 55.0% | |
| GTCCTACCACGAGAGATGCT+AGG | - | chr3.1:82674186-82674205 | MS.gene32792:intron | 55.0% | |
| GTTCAAGGACCGGTGATCGT+AGG | - | chr3.1:82672671-82672690 | MS.gene32792:CDS | 55.0% | |
| ! | CGTTGGTTGATCGTTGCGAC+CGG | - | chr3.1:82673052-82673071 | MS.gene32792:intron | 55.0% |
| ! | TGGGTTGGATCGTCCTCGTT+TGG | - | chr3.1:82674320-82674339 | MS.gene32792:intron | 55.0% |
| GGTCCTGCTCCTACGATCAC+CGG | + | chr3.1:82672683-82672702 | None:intergenic | 60.0% | |
| ! | GCAGTGGGGGAAAAGGTACG+AGG | + | chr3.1:82674068-82674087 | None:intergenic | 60.0% |
| ! | GGGACTGCAAGGTGCCTCTA+TGG | - | chr3.1:82676589-82676608 | MS.gene32792:CDS | 60.0% |
| GGACCGGTGATCGTAGGAGC+AGG | - | chr3.1:82672677-82672696 | MS.gene32792:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 82672560 | 82676676 | 82672560 | ID=MS.gene32792 |
| chr3.1 | mRNA | 82672560 | 82676676 | 82672560 | ID=MS.gene32792.t1;Parent=MS.gene32792 |
| chr3.1 | exon | 82675960 | 82676676 | 82675960 | ID=MS.gene32792.t1.exon1;Parent=MS.gene32792.t1 |
| chr3.1 | CDS | 82675960 | 82676676 | 82675960 | ID=cds.MS.gene32792.t1;Parent=MS.gene32792.t1 |
| chr3.1 | exon | 82674808 | 82675056 | 82674808 | ID=MS.gene32792.t1.exon2;Parent=MS.gene32792.t1 |
| chr3.1 | CDS | 82674808 | 82675056 | 82674808 | ID=cds.MS.gene32792.t1;Parent=MS.gene32792.t1 |
| chr3.1 | exon | 82673688 | 82673810 | 82673688 | ID=MS.gene32792.t1.exon3;Parent=MS.gene32792.t1 |
| chr3.1 | CDS | 82673688 | 82673810 | 82673688 | ID=cds.MS.gene32792.t1;Parent=MS.gene32792.t1 |
| chr3.1 | exon | 82672560 | 82672748 | 82672560 | ID=MS.gene32792.t1.exon4;Parent=MS.gene32792.t1 |
| chr3.1 | CDS | 82672560 | 82672748 | 82672560 | ID=cds.MS.gene32792.t1;Parent=MS.gene32792.t1 |
| Gene Sequence |
| Protein sequence |
