Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51580.t1 | XP_003588697.1 | 96.1 | 406 | 10 | 1 | 1 | 400 | 1 | 406 | 5.90E-234 | 819.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51580.t1 | Q9LFM5 | 70.6 | 398 | 105 | 3 | 11 | 398 | 12 | 407 | 3.8e-165 | 582.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51580.t1 | G7I6C3 | 96.1 | 406 | 10 | 1 | 1 | 400 | 1 | 406 | 4.3e-234 | 819.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05143 | MS.gene51580 | 0.808778 | 2.62E-50 | -1.69E-46 |
| MS.gene051789 | MS.gene51580 | 0.808402 | 3.15E-50 | -1.69E-46 |
| MS.gene053074 | MS.gene51580 | 0.828528 | 8.55E-55 | -1.69E-46 |
| MS.gene053383 | MS.gene51580 | 0.804177 | 2.45E-49 | -1.69E-46 |
| MS.gene05456 | MS.gene51580 | 0.819373 | 1.20E-52 | -1.69E-46 |
| MS.gene055359 | MS.gene51580 | 0.825054 | 5.78E-54 | -1.69E-46 |
| MS.gene059006 | MS.gene51580 | 0.848557 | 5.68E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51580 | MS.gene061851 | PPI |
| MS.gene51580 | MS.gene31616 | PPI |
| MS.gene51580 | MS.gene29205 | PPI |
| MS.gene51580 | MS.gene049295 | PPI |
| MS.gene51580 | MS.gene054944 | PPI |
| MS.gene94810 | MS.gene51580 | PPI |
| MS.gene51580 | MS.gene64265 | PPI |
| MS.gene51580 | MS.gene013322 | PPI |
| MS.gene51580 | MS.gene018590 | PPI |
| MS.gene51580 | MS.gene57685 | PPI |
| MS.gene51580 | MS.gene031178 | PPI |
| MS.gene51580 | MS.gene36879 | PPI |
| MS.gene51580 | MS.gene019484 | PPI |
| MS.gene51580 | MS.gene56048 | PPI |
| MS.gene51580 | MS.gene027681 | PPI |
| MS.gene51580 | MS.gene064951 | PPI |
| MS.gene51580 | MS.gene44331 | PPI |
| MS.gene51580 | MS.gene059027 | PPI |
| MS.gene51580 | MS.gene86173 | PPI |
| MS.gene51580 | MS.gene32792 | PPI |
| MS.gene51580 | MS.gene059136 | PPI |
| MS.gene51580 | MS.gene021474 | PPI |
| MS.gene51580 | MS.gene53594 | PPI |
| MS.gene51580 | MS.gene038029 | PPI |
| MS.gene51580 | MS.gene014685 | PPI |
| MS.gene51580 | MS.gene23537 | PPI |
| MS.gene51580 | MS.gene09884 | PPI |
| MS.gene24021 | MS.gene51580 | PPI |
| MS.gene51580 | MS.gene40340 | PPI |
| MS.gene51580 | MS.gene06418 | PPI |
| MS.gene51580 | MS.gene44332 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51580.t1 | MTR_1g011630 | 96.059 | 406 | 10 | 1 | 1 | 400 | 1 | 406 | 0.0 | 810 |
| MS.gene51580.t1 | MTR_6g086870 | 59.391 | 394 | 146 | 4 | 8 | 387 | 12 | 405 | 5.11e-176 | 497 |
| MS.gene51580.t1 | MTR_7g099330 | 57.218 | 381 | 154 | 3 | 9 | 382 | 17 | 395 | 4.40e-171 | 484 |
| MS.gene51580.t1 | MTR_1g008380 | 61.039 | 385 | 140 | 3 | 9 | 383 | 35 | 419 | 1.41e-170 | 484 |
| MS.gene51580.t1 | MTR_1g069275 | 56.345 | 394 | 162 | 4 | 9 | 392 | 18 | 411 | 2.33e-168 | 478 |
| MS.gene51580.t1 | MTR_1g046230 | 56.186 | 388 | 158 | 2 | 7 | 382 | 15 | 402 | 4.65e-168 | 477 |
| MS.gene51580.t1 | MTR_3g109520 | 58.995 | 378 | 144 | 4 | 11 | 377 | 34 | 411 | 1.21e-165 | 471 |
| MS.gene51580.t1 | MTR_7g099160 | 53.595 | 306 | 133 | 3 | 84 | 382 | 213 | 516 | 1.02e-118 | 355 |
| MS.gene51580.t1 | MTR_8g432640 | 44.920 | 374 | 189 | 4 | 17 | 378 | 7 | 375 | 2.70e-112 | 334 |
| MS.gene51580.t1 | MTR_7g107710 | 44.118 | 374 | 192 | 5 | 17 | 378 | 7 | 375 | 2.88e-111 | 331 |
| MS.gene51580.t1 | MTR_7g107690 | 42.105 | 380 | 203 | 4 | 17 | 384 | 9 | 383 | 3.78e-110 | 328 |
| MS.gene51580.t1 | MTR_5g033260 | 43.501 | 377 | 196 | 5 | 17 | 381 | 7 | 378 | 5.17e-109 | 325 |
| MS.gene51580.t1 | MTR_3g088925 | 42.025 | 395 | 211 | 6 | 17 | 398 | 8 | 397 | 1.24e-107 | 322 |
| MS.gene51580.t1 | MTR_3g088945 | 42.670 | 382 | 202 | 5 | 17 | 386 | 8 | 384 | 2.32e-107 | 322 |
| MS.gene51580.t1 | MTR_3g088955 | 41.266 | 395 | 214 | 6 | 17 | 398 | 8 | 397 | 8.52e-105 | 315 |
| MS.gene51580.t1 | MTR_4g051642 | 41.444 | 374 | 201 | 6 | 17 | 378 | 8 | 375 | 1.15e-101 | 307 |
| MS.gene51580.t1 | MTR_3g096030 | 35.795 | 176 | 85 | 3 | 17 | 188 | 7 | 158 | 3.76e-36 | 130 |
| MS.gene51580.t1 | MTR_8g037880 | 24.545 | 220 | 135 | 7 | 18 | 208 | 6 | 223 | 4.29e-17 | 83.2 |
| MS.gene51580.t1 | MTR_8g037910 | 23.301 | 206 | 132 | 4 | 18 | 197 | 6 | 211 | 1.93e-14 | 73.6 |
| MS.gene51580.t1 | MTR_2g450510 | 25.098 | 255 | 142 | 12 | 18 | 230 | 7 | 254 | 2.46e-14 | 75.1 |
| MS.gene51580.t1 | MTR_8g037910 | 23.301 | 206 | 132 | 4 | 18 | 197 | 6 | 211 | 3.26e-14 | 73.6 |
| MS.gene51580.t1 | MTR_8g037910 | 23.301 | 206 | 132 | 4 | 18 | 197 | 6 | 211 | 6.70e-14 | 73.2 |
| MS.gene51580.t1 | MTR_2g450310 | 26.772 | 254 | 137 | 11 | 18 | 229 | 7 | 253 | 8.24e-14 | 73.2 |
| MS.gene51580.t1 | MTR_2g020630 | 25.726 | 241 | 132 | 10 | 18 | 215 | 16 | 252 | 1.66e-11 | 66.2 |
| MS.gene51580.t1 | MTR_3g437580 | 20.961 | 229 | 144 | 6 | 18 | 209 | 15 | 243 | 8.25e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51580.t1 | AT5G11320 | 70.781 | 397 | 104 | 3 | 11 | 397 | 12 | 406 | 0.0 | 583 |
| MS.gene51580.t1 | AT4G32540 | 61.750 | 400 | 142 | 4 | 11 | 400 | 16 | 414 | 0.0 | 532 |
| MS.gene51580.t1 | AT4G32540 | 61.443 | 402 | 142 | 4 | 11 | 400 | 16 | 416 | 0.0 | 531 |
| MS.gene51580.t1 | AT4G13260 | 59.744 | 390 | 146 | 4 | 2 | 380 | 14 | 403 | 3.27e-172 | 487 |
| MS.gene51580.t1 | AT5G11320 | 71.296 | 324 | 85 | 2 | 11 | 328 | 12 | 333 | 8.76e-172 | 484 |
| MS.gene51580.t1 | AT1G04610 | 56.848 | 387 | 154 | 2 | 9 | 382 | 30 | 416 | 3.93e-169 | 480 |
| MS.gene51580.t1 | AT1G04180 | 57.990 | 388 | 153 | 4 | 4 | 382 | 14 | 400 | 1.18e-168 | 479 |
| MS.gene51580.t1 | AT5G43890 | 55.270 | 389 | 162 | 3 | 6 | 382 | 15 | 403 | 5.07e-165 | 469 |
| MS.gene51580.t1 | AT4G28720 | 55.297 | 387 | 160 | 3 | 9 | 382 | 18 | 404 | 1.57e-163 | 466 |
| MS.gene51580.t1 | AT5G25620 | 57.545 | 391 | 154 | 5 | 10 | 389 | 27 | 416 | 6.09e-162 | 462 |
| MS.gene51580.t1 | AT2G33230 | 57.474 | 388 | 149 | 4 | 9 | 382 | 25 | 410 | 8.23e-162 | 461 |
| MS.gene51580.t1 | AT5G25620 | 58.333 | 384 | 148 | 5 | 10 | 382 | 27 | 409 | 1.28e-161 | 461 |
| MS.gene51580.t1 | AT4G13260 | 60.068 | 293 | 113 | 1 | 2 | 290 | 14 | 306 | 1.76e-134 | 387 |
| MS.gene51580.t1 | AT4G13260 | 56.897 | 290 | 114 | 3 | 102 | 380 | 11 | 300 | 2.71e-112 | 331 |
| MS.gene51580.t1 | AT1G21430 | 44.355 | 372 | 191 | 5 | 17 | 377 | 10 | 376 | 1.42e-111 | 332 |
| MS.gene51580.t1 | AT1G48910 | 42.559 | 383 | 201 | 6 | 17 | 386 | 6 | 382 | 4.81e-111 | 331 |
| MS.gene51580.t1 | AT1G19250 | 24.874 | 398 | 199 | 17 | 18 | 328 | 15 | 399 | 1.45e-15 | 79.0 |
| MS.gene51580.t1 | AT1G65860 | 24.336 | 226 | 135 | 8 | 18 | 210 | 15 | 237 | 1.21e-12 | 69.7 |
| MS.gene51580.t1 | AT5G07800 | 21.739 | 230 | 142 | 6 | 18 | 209 | 18 | 247 | 1.62e-12 | 69.3 |
| MS.gene51580.t1 | AT1G62560 | 23.009 | 226 | 135 | 7 | 18 | 208 | 15 | 236 | 6.87e-12 | 67.4 |
| MS.gene51580.t1 | AT1G62560 | 23.009 | 226 | 135 | 7 | 18 | 208 | 15 | 236 | 9.90e-12 | 66.6 |
Find 62 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTCAAGTTCTCAAATT+TGG | 0.134264 | 3.1:-82931990 | MS.gene51580:CDS |
| GTCATTGGTTGTGGGAATTC+TGG | 0.224967 | 3.1:-82931790 | MS.gene51580:CDS |
| GTTAGTTTCAAGCTTCTTCT+TGG | 0.280395 | 3.1:-82930874 | MS.gene51580:CDS |
| TAGCTATGGGATTATATAAA+TGG | 0.285172 | 3.1:-82930929 | MS.gene51580:CDS |
| GTTGCAAGTTTGAGTTCTAT+TGG | 0.313027 | 3.1:+82930810 | None:intergenic |
| ATGTTTGGTTTCTCAACATA+TGG | 0.323559 | 3.1:-82930954 | MS.gene51580:CDS |
| TTCTGGAATGGAAGTCAGTT+TGG | 0.347203 | 3.1:-82931773 | MS.gene51580:CDS |
| CATACAAGTGATTATAAATC+TGG | 0.355020 | 3.1:-82931841 | MS.gene51580:CDS |
| CAAATAGCACAAATTAAATC+CGG | 0.380183 | 3.1:-82930759 | MS.gene51580:CDS |
| GATGCAATAATCTTAGCAAC+AGG | 0.380414 | 3.1:-82930549 | MS.gene51580:CDS |
| TAATCACTTGTATGAGCAAC+AGG | 0.388008 | 3.1:+82931850 | None:intergenic |
| GCAAAGTGTGTATGGATTCA+TGG | 0.396734 | 3.1:-82932312 | MS.gene51580:CDS |
| ATAGTAGGTGCTGGTCCTTC+AGG | 0.401110 | 3.1:-82932282 | MS.gene51580:CDS |
| ACACAATGCTATGCCTCATT+TGG | 0.405714 | 3.1:-82931740 | MS.gene51580:CDS |
| CCTTGGCTTATTGTTGCTAC+TGG | 0.412409 | 3.1:-82931928 | MS.gene51580:CDS |
| TTAGTTTCAAGCTTCTTCTT+GGG | 0.427173 | 3.1:-82930873 | MS.gene51580:CDS |
| TGTTCCATACCATGAATTGT+TGG | 0.436540 | 3.1:+82931883 | None:intergenic |
| ATTCTTCCAAGAGATATGTT+TGG | 0.437726 | 3.1:-82930969 | MS.gene51580:CDS |
| GGTATCAAGAGGCCTAAAAC+TGG | 0.451158 | 3.1:-82930834 | MS.gene51580:CDS |
| ACAAGAGCAATGTGCCTACT+TGG | 0.453063 | 3.1:-82930524 | MS.gene51580:CDS |
| GGACCAGCACCTACTATGAT+AGG | 0.457137 | 3.1:+82932288 | None:intergenic |
| GTTTGAGGAAAACTCATCAT+AGG | 0.461046 | 3.1:+82932120 | None:intergenic |
| GAGAAACCAAACATATCTCT+TGG | 0.462714 | 3.1:+82930963 | None:intergenic |
| TTGGGAAACACCAATCACTA+TGG | 0.465852 | 3.1:-82930855 | MS.gene51580:CDS |
| ATAGAACTCAAACTTGCAAC+AGG | 0.466421 | 3.1:-82930807 | MS.gene51580:CDS |
| TGGAAAGAGATAACAAGAAA+TGG | 0.467952 | 3.1:-82930606 | MS.gene51580:CDS |
| CTGAAGATATTACTAATCAA+TGG | 0.476187 | 3.1:-82929852 | MS.gene51580:CDS |
| GTGATTGCATAGCTTCACTA+TGG | 0.487978 | 3.1:-82932200 | MS.gene51580:CDS |
| ATCACTTTGATATTCATCCT+AGG | 0.490915 | 3.1:-82932041 | MS.gene51580:CDS |
| CCTCTTGATACCATAGTGAT+TGG | 0.496998 | 3.1:+82930845 | None:intergenic |
| CCCTTTCCTCATGGTTGGAA+AGG | 0.498580 | 3.1:-82929949 | MS.gene51580:CDS |
| CTCAACATATGGAATAGCTA+TGG | 0.500774 | 3.1:-82930943 | MS.gene51580:CDS |
| AAACACCCTTTCCTCATGGT+TGG | 0.503476 | 3.1:-82929954 | MS.gene51580:CDS |
| CCTTTCCAACCATGAGGAAA+GGG | 0.506085 | 3.1:+82929949 | None:intergenic |
| ACATCAGTTCATTTCCTACA+TGG | 0.512049 | 3.1:-82932076 | MS.gene51580:CDS |
| ATTCATGGACCTATCATAGT+AGG | 0.515217 | 3.1:-82932297 | MS.gene51580:CDS |
| TCAACATATGGAATAGCTAT+GGG | 0.521973 | 3.1:-82930942 | MS.gene51580:CDS |
| GAGTTTCGTGCAACCAAATG+AGG | 0.533241 | 3.1:+82931727 | None:intergenic |
| TTCAAGTTCTCAAATTTGGA+TGG | 0.536810 | 3.1:-82931986 | MS.gene51580:CDS |
| GGACCTATCATAGTAGGTGC+TGG | 0.547397 | 3.1:-82932291 | MS.gene51580:CDS |
| AAAACTCCTGTACTTGATGT+TGG | 0.551364 | 3.1:-82930783 | MS.gene51580:CDS |
| GGATACTTAGGAAATGTTTG+AGG | 0.552505 | 3.1:+82932105 | None:intergenic |
| ACCTTTCCAACCATGAGGAA+AGG | 0.554382 | 3.1:+82929948 | None:intergenic |
| AAATAGCACAAATTAAATCC+GGG | 0.560698 | 3.1:-82930758 | MS.gene51580:intron |
| GAGCAAGGATTGTATACAGT+GGG | 0.564264 | 3.1:-82929925 | MS.gene51580:CDS |
| CTTCTCTCAAGAATGAGACT+TGG | 0.577619 | 3.1:+82932222 | None:intergenic |
| TTCACAAGAAGAGGTCTACA+TGG | 0.580526 | 3.1:-82929901 | MS.gene51580:CDS |
| AATATCAAAGTGATCAGCAT+AGG | 0.584130 | 3.1:+82932050 | None:intergenic |
| ATTTGACCAACATCAAGTAC+AGG | 0.585749 | 3.1:+82930777 | None:intergenic |
| CAATGTGCCTACTTGGCTCA+AGG | 0.592907 | 3.1:-82930517 | MS.gene51580:intron |
| AGAACAGTTTGATTAAACCT+AGG | 0.595686 | 3.1:+82932024 | None:intergenic |
| ACAGTGGGTTTCACAAGAAG+AGG | 0.597945 | 3.1:-82929910 | MS.gene51580:CDS |
| CATGGTTGGAAAGGTGAGCA+AGG | 0.614511 | 3.1:-82929940 | MS.gene51580:CDS |
| TGGTTGTGGGAATTCTGGAA+TGG | 0.619937 | 3.1:-82931785 | MS.gene51580:CDS |
| GCTGCTTGTTTATCAGAACA+AGG | 0.634289 | 3.1:-82932249 | MS.gene51580:CDS |
| TGCTCACCTTTCCAACCATG+AGG | 0.637968 | 3.1:+82929943 | None:intergenic |
| CCAATCACTATGGTATCAAG+AGG | 0.641108 | 3.1:-82930845 | MS.gene51580:CDS |
| CCAGTAGCAACAATAAGCCA+AGG | 0.647996 | 3.1:+82931928 | None:intergenic |
| GCAGCTACTGCTATACCTGA+AGG | 0.661207 | 3.1:+82932267 | None:intergenic |
| ATGCAATAATCTTAGCAACA+GGG | 0.685349 | 3.1:-82930548 | MS.gene51580:CDS |
| ATCAGCATAGGATTCCATGT+AGG | 0.688016 | 3.1:+82932062 | None:intergenic |
| TGAGCAAGGATTGTATACAG+TGG | 0.697920 | 3.1:-82929926 | MS.gene51580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATTAATAAATTTATT+AGG | - | chr3.1:82931414-82931433 | MS.gene51580:intron | 0.0% |
| !! | AAATAAATATTAAATGATGA+AGG | + | chr3.1:82930755-82930774 | None:intergenic | 10.0% |
| !! | TTGATATTATAAAAAAAATG+CGG | - | chr3.1:82930466-82930485 | MS.gene51580:intron | 10.0% |
| !!! | ATATTTTTTTTTTATGATTC+AGG | - | chr3.1:82932115-82932134 | MS.gene51580:CDS | 10.0% |
| !!! | TATTTTTTTTTTATGATTCA+GGG | - | chr3.1:82932116-82932135 | MS.gene51580:CDS | 10.0% |
| !!! | TTTGATATGTATATTTTTTT+AGG | - | chr3.1:82931449-82931468 | MS.gene51580:intron | 10.0% |
| !!! | AAAAGAATAGTACTTTTAAA+AGG | + | chr3.1:82931994-82932013 | None:intergenic | 15.0% |
| !!! | AAAGAATAGTACTTTTAAAA+GGG | + | chr3.1:82931993-82932012 | None:intergenic | 15.0% |
| !!! | GCAATATTTTATATGATTTA+AGG | - | chr3.1:82931128-82931147 | MS.gene51580:intron | 15.0% |
| !! | AAAGAATAAAATCAGTTTCT+TGG | - | chr3.1:82931767-82931786 | MS.gene51580:CDS | 20.0% |
| !! | AAATGACAATTAAAAAGGAA+CGG | - | chr3.1:82930886-82930905 | MS.gene51580:CDS | 20.0% |
| !! | ATTGAAATTCGAAAGAAAAA+AGG | + | chr3.1:82930433-82930452 | None:intergenic | 20.0% |
| !! | ATTGTTTAGTACTTAAAATG+AGG | - | chr3.1:82931026-82931045 | MS.gene51580:intron | 20.0% |
| !! | GATTATTAAAATTACCCAAT+GGG | + | chr3.1:82931072-82931091 | None:intergenic | 20.0% |
| !! | TAAATAATCAAGGGTAATAA+AGG | - | chr3.1:82930795-82930814 | MS.gene51580:CDS | 20.0% |
| !! | TGATTATTAAAATTACCCAA+TGG | + | chr3.1:82931073-82931092 | None:intergenic | 20.0% |
| !! | TTCTGAGTACAAAAATAAAA+AGG | - | chr3.1:82930307-82930326 | MS.gene51580:intron | 20.0% |
| !! | TTGAAATTCGAAAGAAAAAA+GGG | + | chr3.1:82930432-82930451 | None:intergenic | 20.0% |
| !!! | AACTTGTCTACTAATTTTAA+TGG | + | chr3.1:82931225-82931244 | None:intergenic | 20.0% |
| !!! | AATGATTTTTTCACTAAAGA+TGG | - | chr3.1:82932140-82932159 | MS.gene51580:CDS | 20.0% |
| !!! | ATAAAACAGTACTAAACTTT+TGG | - | chr3.1:82932018-82932037 | MS.gene51580:CDS | 20.0% |
| !!! | ATATGTTATTTTTTCCCATT+GGG | - | chr3.1:82931055-82931074 | MS.gene51580:intron | 20.0% |
| !!! | GTACAAAAATAAAAAGGTTT+TGG | - | chr3.1:82930313-82930332 | MS.gene51580:intron | 20.0% |
| !!! | TAGGTAAATGAAGTTTTAAA+CGG | + | chr3.1:82929968-82929987 | None:intergenic | 20.0% |
| !!! | TATATGTTATTTTTTCCCAT+TGG | - | chr3.1:82931054-82931073 | MS.gene51580:intron | 20.0% |
| !!! | TATGTATATTTTTTTAGGCT+AGG | - | chr3.1:82931454-82931473 | MS.gene51580:intron | 20.0% |
| ! | AAAAAAAATGCGGTTTAATG+TGG | - | chr3.1:82930476-82930495 | MS.gene51580:intron | 25.0% |
| ! | AAAATCACGACAAAAAAAGA+TGG | + | chr3.1:82930582-82930601 | None:intergenic | 25.0% |
| ! | AAATAGCACAAATTAAATCC+GGG | - | chr3.1:82931367-82931386 | MS.gene51580:intron | 25.0% |
| ! | CAAATAGCACAAATTAAATC+CGG | - | chr3.1:82931366-82931385 | MS.gene51580:intron | 25.0% |
| ! | CATACAAGTGATTATAAATC+TGG | - | chr3.1:82930284-82930303 | MS.gene51580:intron | 25.0% |
| ! | CTGAAGATATTACTAATCAA+TGG | - | chr3.1:82932273-82932292 | MS.gene51580:CDS | 25.0% |
| ! | CTGCAAAATGACAATTAAAA+AGG | - | chr3.1:82930881-82930900 | MS.gene51580:CDS | 25.0% |
| ! | TAGCTATGGGATTATATAAA+TGG | - | chr3.1:82931196-82931215 | MS.gene51580:intron | 25.0% |
| ! | TCTCTGCAATAAATAATCAA+GGG | - | chr3.1:82930786-82930805 | MS.gene51580:CDS | 25.0% |
| ! | TGATTAATATTGTAGGTGAT+GGG | - | chr3.1:82931489-82931508 | MS.gene51580:intron | 25.0% |
| ! | TTAATACATGTTTCGATTCA+TGG | - | chr3.1:82930512-82930531 | MS.gene51580:intron | 25.0% |
| ! | TTGATTAATATTGTAGGTGA+TGG | - | chr3.1:82931488-82931507 | MS.gene51580:intron | 25.0% |
| ! | TTGGGATTGATTAATATTGT+AGG | - | chr3.1:82931482-82931501 | MS.gene51580:intron | 25.0% |
| ! | TTTAATAAGGTCACTCATAA+AGG | - | chr3.1:82930962-82930981 | MS.gene51580:CDS | 25.0% |
| !! | AAGAAATGGTGCAAAATTTT+TGG | - | chr3.1:82931533-82931552 | MS.gene51580:intron | 25.0% |
| !! | ATTTTCAGTATTTTTCACCT+TGG | - | chr3.1:82930180-82930199 | MS.gene51580:intron | 25.0% |
| !! | TGTTTTTCTCTTCTTTTACA+TGG | - | chr3.1:82932082-82932101 | MS.gene51580:CDS | 25.0% |
| !! | TTGATTCAAGTTCTCAAATT+TGG | - | chr3.1:82930135-82930154 | MS.gene51580:intron | 25.0% |
| !!! | AATAAAAAGGTTTTGGTCAT+TGG | - | chr3.1:82930320-82930339 | MS.gene51580:intron | 25.0% |
| !!! | AATATCTTCAGCTATTTTGA+TGG | + | chr3.1:82932264-82932283 | None:intergenic | 25.0% |
| !!! | TTTTTAGGCTAGGATTAATT+GGG | - | chr3.1:82931464-82931483 | MS.gene51580:intron | 25.0% |
| !!! | TTTTTTAGGCTAGGATTAAT+TGG | - | chr3.1:82931463-82931482 | MS.gene51580:intron | 25.0% |
| AAGAAAAAGCAAAGTGTGTA+TGG | - | chr3.1:82929805-82929824 | MS.gene51580:CDS | 30.0% | |
| AAGTGACCATTAAAAAGGAA+CGG | + | chr3.1:82930652-82930671 | None:intergenic | 30.0% | |
| AATATCAAAGTGATCAGCAT+AGG | + | chr3.1:82930078-82930097 | None:intergenic | 30.0% | |
| AGAACAGTTTGATTAAACCT+AGG | + | chr3.1:82930104-82930123 | None:intergenic | 30.0% | |
| ATCACTTTGATATTCATCCT+AGG | - | chr3.1:82930084-82930103 | MS.gene51580:intron | 30.0% | |
| ATGCAATAATCTTAGCAACA+GGG | - | chr3.1:82931577-82931596 | MS.gene51580:intron | 30.0% | |
| ATTAAATCCGGGTAACATTA+AGG | - | chr3.1:82931378-82931397 | MS.gene51580:intron | 30.0% | |
| ATTCTTCCAAGAGATATGTT+TGG | - | chr3.1:82931156-82931175 | MS.gene51580:intron | 30.0% | |
| CATGTATTAAAGATGCATCT+CGG | + | chr3.1:82930502-82930521 | None:intergenic | 30.0% | |
| CTCTCTGCAATAAATAATCA+AGG | - | chr3.1:82930785-82930804 | MS.gene51580:CDS | 30.0% | |
| GGTAGTTCACAAAAATGTTT+AGG | + | chr3.1:82929987-82930006 | None:intergenic | 30.0% | |
| TAACATACCTTAATGTTACC+CGG | + | chr3.1:82931388-82931407 | None:intergenic | 30.0% | |
| TCAACATATGGAATAGCTAT+GGG | - | chr3.1:82931183-82931202 | MS.gene51580:intron | 30.0% | |
| TGGAAAGAGATAACAAGAAA+TGG | - | chr3.1:82931519-82931538 | MS.gene51580:intron | 30.0% | |
| TTAGTTTCAAGCTTCTTCTT+GGG | - | chr3.1:82931252-82931271 | MS.gene51580:intron | 30.0% | |
| ! | ATGTTTGGTTTCTCAACATA+TGG | - | chr3.1:82931171-82931190 | MS.gene51580:intron | 30.0% |
| ! | GAAATGAACTGATGTTTTGT+AGG | + | chr3.1:82930044-82930063 | None:intergenic | 30.0% |
| ! | GATGGTTTTTGACAAAATTG+CGG | + | chr3.1:82930564-82930583 | None:intergenic | 30.0% |
| ! | TGATGTTTTGTAGGATACTT+AGG | + | chr3.1:82930035-82930054 | None:intergenic | 30.0% |
| ! | TTCAAGTTCTCAAATTTGGA+TGG | - | chr3.1:82930139-82930158 | MS.gene51580:intron | 30.0% |
| ! | TTTTCCAACAATTCATGGTA+TGG | - | chr3.1:82930238-82930257 | MS.gene51580:intron | 30.0% |
| !! | AATGGTGCAAAATTTTTGGA+TGG | - | chr3.1:82931537-82931556 | MS.gene51580:intron | 30.0% |
| !! | ACTTGTGAGTTTGTTCTTTT+TGG | - | chr3.1:82931094-82931113 | MS.gene51580:intron | 30.0% |
| !! | ATTTTTGGATGGACAAGAAA+AGG | - | chr3.1:82931548-82931567 | MS.gene51580:intron | 30.0% |
| !! | TAGCTAGAACTTTGAAATGA+CGG | + | chr3.1:82930615-82930634 | None:intergenic | 30.0% |
| !! | TCCTTTTTAATGGTCACTTT+TGG | - | chr3.1:82930653-82930672 | MS.gene51580:intron | 30.0% |
| !!! | ATGAAGTTTTAAACGGTCAT+AGG | + | chr3.1:82929961-82929980 | None:intergenic | 30.0% |
| !!! | CACTTTGCTTTTTCTTTGAA+AGG | + | chr3.1:82929801-82929820 | None:intergenic | 30.0% |
| !!! | CCTTTTTAATGGTCACTTTT+GGG | - | chr3.1:82930654-82930673 | MS.gene51580:intron | 30.0% |
| !!! | TTGTTCTTTTTGGCTAACTT+TGG | - | chr3.1:82931104-82931123 | MS.gene51580:intron | 30.0% |
| AAAACTCCTGTACTTGATGT+TGG | - | chr3.1:82931342-82931361 | MS.gene51580:intron | 35.0% | |
| ACATCAGTTCATTTCCTACA+TGG | - | chr3.1:82930049-82930068 | MS.gene51580:intron | 35.0% | |
| ATAGAACTCAAACTTGCAAC+AGG | - | chr3.1:82931318-82931337 | MS.gene51580:intron | 35.0% | |
| ATTCATGGACCTATCATAGT+AGG | - | chr3.1:82929828-82929847 | MS.gene51580:CDS | 35.0% | |
| ATTTGACCAACATCAAGTAC+AGG | + | chr3.1:82931351-82931370 | None:intergenic | 35.0% | |
| CCATGAATTGTTGGAAAAAC+AGG | + | chr3.1:82930236-82930255 | None:intergenic | 35.0% | |
| CCCAAAAGTGACCATTAAAA+AGG | + | chr3.1:82930657-82930676 | None:intergenic | 35.0% | |
| CTCAACATATGGAATAGCTA+TGG | - | chr3.1:82931182-82931201 | MS.gene51580:intron | 35.0% | |
| CTTATGACCTATCACTATCT+AGG | - | chr3.1:82931683-82931702 | MS.gene51580:intron | 35.0% | |
| GAGAAACCAAACATATCTCT+TGG | + | chr3.1:82931165-82931184 | None:intergenic | 35.0% | |
| GATGCAATAATCTTAGCAAC+AGG | - | chr3.1:82931576-82931595 | MS.gene51580:intron | 35.0% | |
| GGATACTTAGGAAATGTTTG+AGG | + | chr3.1:82930023-82930042 | None:intergenic | 35.0% | |
| GTTTGAGGAAAACTCATCAT+AGG | + | chr3.1:82930008-82930027 | None:intergenic | 35.0% | |
| TAATCACTTGTATGAGCAAC+AGG | + | chr3.1:82930278-82930297 | None:intergenic | 35.0% | |
| TGACAATTAAAAAGGAACGG+AGG | - | chr3.1:82930889-82930908 | MS.gene51580:CDS | 35.0% | |
| TGTTCCATACCATGAATTGT+TGG | + | chr3.1:82930245-82930264 | None:intergenic | 35.0% | |
| TTTGACAAAATTGCGGTCAT+AGG | + | chr3.1:82930557-82930576 | None:intergenic | 35.0% | |
| ! | AGTTCTATTGGACCAGTTTT+AGG | + | chr3.1:82931306-82931325 | None:intergenic | 35.0% |
| ! | CATGGTATGGAACATTTTCA+TGG | - | chr3.1:82930251-82930270 | MS.gene51580:intron | 35.0% |
| ! | GTTAGTTTCAAGCTTCTTCT+TGG | - | chr3.1:82931251-82931270 | MS.gene51580:intron | 35.0% |
| ! | GTTGCAAGTTTGAGTTCTAT+TGG | + | chr3.1:82931318-82931337 | None:intergenic | 35.0% |
| ! | TTTTTAACCTTGAGCCAAGT+AGG | + | chr3.1:82931618-82931637 | None:intergenic | 35.0% |
| !! | CCTGTTTTTCCAACAATTCA+TGG | - | chr3.1:82930233-82930252 | MS.gene51580:intron | 35.0% |
| !! | TAATATTGTAGGTGATGGGA+AGG | - | chr3.1:82931493-82931512 | MS.gene51580:intron | 35.0% |
| ACACAATGCTATGCCTCATT+TGG | - | chr3.1:82930385-82930404 | MS.gene51580:intron | 40.0% | |
| ACCTATCACTATCTAGGCTT+GGG | - | chr3.1:82931689-82931708 | MS.gene51580:intron | 40.0% | |
| ATCAGCATAGGATTCCATGT+AGG | + | chr3.1:82930066-82930085 | None:intergenic | 40.0% | |
| CCAATCACTATGGTATCAAG+AGG | - | chr3.1:82931280-82931299 | MS.gene51580:intron | 40.0% | |
| CCTCTTGATACCATAGTGAT+TGG | + | chr3.1:82931283-82931302 | None:intergenic | 40.0% | |
| CTTCTCTCAAGAATGAGACT+TGG | + | chr3.1:82929906-82929925 | None:intergenic | 40.0% | |
| GAGCAAGGATTGTATACAGT+GGG | - | chr3.1:82932200-82932219 | MS.gene51580:CDS | 40.0% | |
| GCAAAGTGTGTATGGATTCA+TGG | - | chr3.1:82929813-82929832 | MS.gene51580:CDS | 40.0% | |
| GCTGCTTGTTTATCAGAACA+AGG | - | chr3.1:82929876-82929895 | MS.gene51580:CDS | 40.0% | |
| GTGATTGCATAGCTTCACTA+TGG | - | chr3.1:82929925-82929944 | MS.gene51580:CDS | 40.0% | |
| TGACCATTAAAAAGGAACGG+AGG | + | chr3.1:82930649-82930668 | None:intergenic | 40.0% | |
| TGAGCAAGGATTGTATACAG+TGG | - | chr3.1:82932199-82932218 | MS.gene51580:CDS | 40.0% | |
| TTCACAAGAAGAGGTCTACA+TGG | - | chr3.1:82932224-82932243 | MS.gene51580:CDS | 40.0% | |
| TTGGGAAACACCAATCACTA+TGG | - | chr3.1:82931270-82931289 | MS.gene51580:intron | 40.0% | |
| ! | CTTCCTCCGTTCCTTTTTAA+TGG | - | chr3.1:82930643-82930662 | MS.gene51580:intron | 40.0% |
| !! | AAGGTTTTGGTCATTGGTTG+TGG | - | chr3.1:82930326-82930345 | MS.gene51580:intron | 40.0% |
| !! | AGGTTTTGGTCATTGGTTGT+GGG | - | chr3.1:82930327-82930346 | MS.gene51580:intron | 40.0% |
| !! | TTCTGGAATGGAAGTCAGTT+TGG | - | chr3.1:82930352-82930371 | MS.gene51580:intron | 40.0% |
| AAACACCCTTTCCTCATGGT+TGG | - | chr3.1:82932171-82932190 | MS.gene51580:CDS | 45.0% | |
| ACAAGAGCAATGTGCCTACT+TGG | - | chr3.1:82931601-82931620 | MS.gene51580:intron | 45.0% | |
| ACCTTTCCAACCATGAGGAA+AGG | + | chr3.1:82932180-82932199 | None:intergenic | 45.0% | |
| CCAAAAACACCCTTTCCTCA+TGG | - | chr3.1:82932167-82932186 | MS.gene51580:CDS | 45.0% | |
| CCAGTAGCAACAATAAGCCA+AGG | + | chr3.1:82930200-82930219 | None:intergenic | 45.0% | |
| CCTTGGCTTATTGTTGCTAC+TGG | - | chr3.1:82930197-82930216 | MS.gene51580:intron | 45.0% | |
| CCTTTCCAACCATGAGGAAA+GGG | + | chr3.1:82932179-82932198 | None:intergenic | 45.0% | |
| GACCTATCACTATCTAGGCT+TGG | - | chr3.1:82931688-82931707 | MS.gene51580:intron | 45.0% | |
| GAGTTTCGTGCAACCAAATG+AGG | + | chr3.1:82930401-82930420 | None:intergenic | 45.0% | |
| GGTATCAAGAGGCCTAAAAC+TGG | - | chr3.1:82931291-82931310 | MS.gene51580:intron | 45.0% | |
| TCCCAAGCCTAGATAGTGAT+AGG | + | chr3.1:82931693-82931712 | None:intergenic | 45.0% | |
| ! | ACAGTGGGTTTCACAAGAAG+AGG | - | chr3.1:82932215-82932234 | MS.gene51580:CDS | 45.0% |
| ! | GTCATTGGTTGTGGGAATTC+TGG | - | chr3.1:82930335-82930354 | MS.gene51580:intron | 45.0% |
| ! | TGGTTGTGGGAATTCTGGAA+TGG | - | chr3.1:82930340-82930359 | MS.gene51580:intron | 45.0% |
| !!! | CCATGAGGAAAGGGTGTTTT+TGG | + | chr3.1:82932170-82932189 | None:intergenic | 45.0% |
| !! | TATTTAAATATTAAAAAAAG+TGG | + | chr3.1:82931800-82931819 | None:intergenic | 5.0% |
| !!! | TTATATTAATACTTTTAATA+AGG | - | chr3.1:82930949-82930968 | MS.gene51580:CDS | 5.0% |
| CAATGTGCCTACTTGGCTCA+AGG | - | chr3.1:82931608-82931627 | MS.gene51580:intron | 50.0% | |
| CATGGTTGGAAAGGTGAGCA+AGG | - | chr3.1:82932185-82932204 | MS.gene51580:CDS | 50.0% | |
| CCCTTTCCTCATGGTTGGAA+AGG | - | chr3.1:82932176-82932195 | MS.gene51580:CDS | 50.0% | |
| GCAGCTACTGCTATACCTGA+AGG | + | chr3.1:82929861-82929880 | None:intergenic | 50.0% | |
| GGACCAGCACCTACTATGAT+AGG | + | chr3.1:82929840-82929859 | None:intergenic | 50.0% | |
| GGACCTATCATAGTAGGTGC+TGG | - | chr3.1:82929834-82929853 | MS.gene51580:CDS | 50.0% | |
| TGCTCACCTTTCCAACCATG+AGG | + | chr3.1:82932185-82932204 | None:intergenic | 50.0% | |
| !! | ATAGTAGGTGCTGGTCCTTC+AGG | - | chr3.1:82929843-82929862 | MS.gene51580:CDS | 50.0% |
| !! | TGTAGGTGATGGGAAGGTGT+TGG | - | chr3.1:82931499-82931518 | MS.gene51580:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 82929792 | 82932355 | 82929792 | ID=MS.gene51580 |
| chr3.1 | mRNA | 82929792 | 82932355 | 82929792 | ID=MS.gene51580.t1;Parent=MS.gene51580 |
| chr3.1 | exon | 82931726 | 82932355 | 82931726 | ID=MS.gene51580.t1.exon1;Parent=MS.gene51580.t1 |
| chr3.1 | CDS | 82931726 | 82932355 | 82931726 | ID=cds.MS.gene51580.t1;Parent=MS.gene51580.t1 |
| chr3.1 | exon | 82930759 | 82930997 | 82930759 | ID=MS.gene51580.t1.exon2;Parent=MS.gene51580.t1 |
| chr3.1 | CDS | 82930759 | 82930997 | 82930759 | ID=cds.MS.gene51580.t1;Parent=MS.gene51580.t1 |
| chr3.1 | exon | 82930518 | 82930632 | 82930518 | ID=MS.gene51580.t1.exon3;Parent=MS.gene51580.t1 |
| chr3.1 | CDS | 82930518 | 82930632 | 82930518 | ID=cds.MS.gene51580.t1;Parent=MS.gene51580.t1 |
| chr3.1 | exon | 82929792 | 82930010 | 82929792 | ID=MS.gene51580.t1.exon4;Parent=MS.gene51580.t1 |
| chr3.1 | CDS | 82929792 | 82930010 | 82929792 | ID=cds.MS.gene51580.t1;Parent=MS.gene51580.t1 |
| Gene Sequence |
| Protein sequence |
