AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015953

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015953.t1 MTR_1g011630 98.030 406 8 0 1 406 1 406 0.0 835
MS.gene015953.t1 MTR_6g086870 60.668 389 145 2 13 393 17 405 0.0 514
MS.gene015953.t1 MTR_7g099330 58.005 381 157 2 9 388 17 395 1.74e-177 501
MS.gene015953.t1 MTR_1g008380 62.078 385 142 2 9 389 35 419 2.55e-177 501
MS.gene015953.t1 MTR_1g069275 57.360 394 164 3 9 398 18 411 2.96e-175 496
MS.gene015953.t1 MTR_1g046230 57.216 388 160 1 7 388 15 402 8.58e-175 494
MS.gene015953.t1 MTR_3g109520 59.788 378 147 3 11 383 34 411 6.52e-171 484
MS.gene015953.t1 MTR_7g099160 54.575 306 136 2 84 388 213 516 7.78e-125 371
MS.gene015953.t1 MTR_7g107710 44.652 374 196 5 17 384 7 375 1.13e-114 340
MS.gene015953.t1 MTR_8g432640 45.213 376 195 4 17 386 7 377 1.19e-114 340
MS.gene015953.t1 MTR_7g107690 42.632 380 207 4 17 390 9 383 6.72e-113 335
MS.gene015953.t1 MTR_5g033260 44.032 377 200 5 17 387 7 378 3.39e-112 334
MS.gene015953.t1 MTR_3g088925 42.278 395 216 5 17 404 8 397 5.74e-112 333
MS.gene015953.t1 MTR_3g088945 42.932 382 207 4 17 392 8 384 1.53e-111 332
MS.gene015953.t1 MTR_3g088955 41.519 395 219 5 17 404 8 397 3.50e-109 327
MS.gene015953.t1 MTR_4g051642 41.711 374 206 5 17 384 8 375 3.27e-105 317
MS.gene015953.t1 MTR_3g096030 35.795 176 85 3 17 188 7 158 2.85e-36 130
MS.gene015953.t1 MTR_8g037880 24.545 220 135 7 18 208 6 223 6.59e-17 82.4
MS.gene015953.t1 MTR_8g037910 23.558 208 129 6 18 197 6 211 2.35e-14 73.2
MS.gene015953.t1 MTR_2g450510 25.098 255 142 12 18 230 7 254 2.53e-14 75.1
MS.gene015953.t1 MTR_8g037910 23.301 206 132 4 18 197 6 211 3.81e-14 73.2
MS.gene015953.t1 MTR_8g037910 23.301 206 132 4 18 197 6 211 8.08e-14 73.2
MS.gene015953.t1 MTR_2g450310 26.772 254 137 11 18 229 7 253 9.26e-14 73.2
MS.gene015953.t1 MTR_4g124800 25.000 356 188 18 40 325 38 384 3.29e-12 68.6
MS.gene015953.t1 MTR_2g020630 25.726 241 132 10 18 215 16 252 1.82e-11 66.2
MS.gene015953.t1 MTR_3g437580 20.961 229 144 6 18 209 15 243 7.51e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015953.t1 AT5G11320 71.788 397 106 2 11 403 12 406 0.0 599
MS.gene015953.t1 AT4G32540 63.000 400 143 3 11 406 16 414 0.0 551
MS.gene015953.t1 AT4G32540 62.935 402 142 4 11 406 16 416 0.0 546
MS.gene015953.t1 AT5G11320 72.531 324 87 1 11 334 12 333 7.27e-178 499
MS.gene015953.t1 AT4G13260 60.256 390 150 2 2 386 14 403 4.17e-177 500
MS.gene015953.t1 AT1G04610 57.364 387 158 1 9 388 30 416 1.37e-174 494
MS.gene015953.t1 AT1G04180 57.990 388 159 3 4 388 14 400 2.27e-173 491
MS.gene015953.t1 AT5G43890 55.527 389 167 2 6 388 15 403 8.07e-171 484
MS.gene015953.t1 AT4G28720 56.072 387 163 2 9 388 18 404 1.42e-169 481
MS.gene015953.t1 AT5G25620 58.312 391 157 4 10 395 27 416 8.00e-169 480
MS.gene015953.t1 AT5G25620 59.115 384 151 4 10 388 27 409 2.04e-168 478
MS.gene015953.t1 AT2G33230 57.106 387 158 2 9 388 25 410 5.56e-167 475
MS.gene015953.t1 AT4G13260 60.269 297 114 1 2 294 14 310 1.21e-136 393
MS.gene015953.t1 AT4G13260 57.931 290 117 2 102 386 11 300 7.18e-117 343
MS.gene015953.t1 AT1G21430 44.892 372 195 4 17 383 10 376 3.35e-116 344
MS.gene015953.t1 AT1G48910 42.820 383 206 5 17 392 6 382 8.00e-115 340
MS.gene015953.t1 AT1G19250 24.181 397 209 16 18 334 15 399 1.03e-15 79.3
MS.gene015953.t1 AT1G65860 24.336 226 135 8 18 210 15 237 1.51e-12 69.3
MS.gene015953.t1 AT5G07800 21.739 230 142 6 18 209 18 247 2.43e-12 68.6
MS.gene015953.t1 AT1G62560 23.009 226 135 7 18 208 15 236 8.24e-12 67.0
MS.gene015953.t1 AT1G62560 23.009 226 135 7 18 208 15 236 1.09e-11 66.6

Find 64 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATTCAAGTTCTCAAATT+TGG 0.134264 1.2:+9503792 MS.gene015953:CDS
GTCATTGGTTGTGGGAATTC+TGG 0.224967 1.2:+9503992 MS.gene015953:CDS
TTCTGGAATGGAAGTTAGTT+TGG 0.279463 1.2:+9504009 MS.gene015953:CDS
GTTAGTTTCAAGCTTCTTCT+TGG 0.280395 1.2:+9504958 MS.gene015953:CDS
TAGCTATGGGATTATATAAA+TGG 0.285172 1.2:+9504903 MS.gene015953:CDS
AATTAAATCCGGTAACATTA+AGG 0.303146 1.2:+9505084 MS.gene015953:CDS
GTTGCAAGTTTGAGTTCTAT+TGG 0.313027 1.2:-9505022 None:intergenic
ATGTTTGGTTTCTCAACATA+TGG 0.323559 1.2:+9504878 MS.gene015953:CDS
CATACAAGTGATTATAAATC+TGG 0.355020 1.2:+9503941 MS.gene015953:CDS
GATGCAATAATCTTAGCAAC+AGG 0.380414 1.2:+9505279 MS.gene015953:CDS
TAATCACTTGTATGAGCAAC+AGG 0.388008 1.2:-9503932 None:intergenic
GCAAAGTGTGTATGGATTCA+TGG 0.396734 1.2:+9503470 MS.gene015953:CDS
GTAACATACCTTAATGTTAC+CGG 0.400738 1.2:-9505092 None:intergenic
ATAGTAGGTGCTGGTCCTTC+AGG 0.401110 1.2:+9503500 MS.gene015953:CDS
ACACAATGCTATGCCTCATT+TGG 0.405714 1.2:+9504042 MS.gene015953:CDS
CCTTGGCTTATTGTTGCTAC+TGG 0.412409 1.2:+9503854 MS.gene015953:CDS
TTAGTTTCAAGCTTCTTCTT+GGG 0.427173 1.2:+9504959 MS.gene015953:CDS
TGTTCCATACCATGAATTGT+TGG 0.436540 1.2:-9503899 None:intergenic
ATTCTTCCAAGAGATATGTT+TGG 0.437726 1.2:+9504863 MS.gene015953:CDS
GGTATCAAGAGGCCTAAAAC+TGG 0.451158 1.2:+9504998 MS.gene015953:CDS
ACAAGAGCAATGTGCCTACT+TGG 0.453063 1.2:+9505304 MS.gene015953:CDS
GGACCAGCACCTACTATGAT+AGG 0.457137 1.2:-9503494 None:intergenic
GTTTGAGGAAAACTCATCAT+AGG 0.461046 1.2:-9503662 None:intergenic
GAGAAACCAAACATATCTCT+TGG 0.462714 1.2:-9504869 None:intergenic
TTGGGAAACACCAATCACTA+TGG 0.465852 1.2:+9504977 MS.gene015953:CDS
ATAGAACTCAAACTTGCAAC+AGG 0.466421 1.2:+9505025 MS.gene015953:CDS
CAAATAGCACAAATTAAATC+CGG 0.476052 1.2:+9505073 MS.gene015953:CDS
CTGAAGATATTACTAATCAA+TGG 0.476187 1.2:+9505980 MS.gene015953:CDS
GTGAAAGAGATAACAAGAAA+TGG 0.481980 1.2:+9505222 MS.gene015953:CDS
GTGATTGCATAGCTTCACTA+TGG 0.487978 1.2:+9503582 MS.gene015953:CDS
ATCACTTTGATATTCATCCT+AGG 0.490915 1.2:+9503741 MS.gene015953:CDS
CCTCTTGATACCATAGTGAT+TGG 0.496998 1.2:-9504987 None:intergenic
CCCTTTCCTCATGGTTGGAA+AGG 0.498580 1.2:+9505883 MS.gene015953:CDS
CTCAACATATGGAATAGCTA+TGG 0.500774 1.2:+9504889 MS.gene015953:CDS
AAACACCCTTTCCTCATGGT+TGG 0.503476 1.2:+9505878 MS.gene015953:CDS
CCTTTCCAACCATGAGGAAA+GGG 0.506085 1.2:-9505883 None:intergenic
ACATCAGTTCATTTCCTACA+TGG 0.512049 1.2:+9503706 MS.gene015953:CDS
ATTCATGGACCTATCATAGT+AGG 0.515217 1.2:+9503485 MS.gene015953:CDS
TCAACATATGGAATAGCTAT+GGG 0.521973 1.2:+9504890 MS.gene015953:CDS
GAGTTTCGTGCAACCAAATG+AGG 0.533241 1.2:-9504055 None:intergenic
TTCAAGTTCTCAAATTTGGA+TGG 0.536810 1.2:+9503796 MS.gene015953:CDS
GGACCTATCATAGTAGGTGC+TGG 0.547397 1.2:+9503491 MS.gene015953:CDS
AAAACTCCTGTACTTGATGT+TGG 0.551364 1.2:+9505049 MS.gene015953:CDS
GGATACTTAGGAAATGTTTG+AGG 0.552505 1.2:-9503677 None:intergenic
ACCTTTCCAACCATGAGGAA+AGG 0.554382 1.2:-9505884 None:intergenic
GAGCAAGGATTGTATACAGT+GGG 0.564264 1.2:+9505907 MS.gene015953:CDS
TTCACAAGAAGAGGTCTACA+TGG 0.580526 1.2:+9505931 MS.gene015953:CDS
AATATCAAAGTGATCAGCAT+AGG 0.584130 1.2:-9503732 None:intergenic
ATTTGACCAACATCAAGTAC+AGG 0.585749 1.2:-9505055 None:intergenic
CAATGTGCCTACTTGGCTCA+AGG 0.592907 1.2:+9505311 MS.gene015953:CDS
AGAACAGTTTGATTAAACCT+AGG 0.595686 1.2:-9503758 None:intergenic
ACAGTGGGTTTCACAAGAAG+AGG 0.597945 1.2:+9505922 MS.gene015953:CDS
CATGGTTGGAAAGGTGAGCA+AGG 0.614511 1.2:+9505892 MS.gene015953:CDS
TGGTTGTGGGAATTCTGGAA+TGG 0.619937 1.2:+9503997 MS.gene015953:CDS
GCTGCTTGTTTATCAGAACA+AGG 0.634289 1.2:+9503533 MS.gene015953:CDS
CTTCTCTCAAGAATGAGACT+CGG 0.636587 1.2:-9503560 None:intergenic
TGCTCACCTTTCCAACCATG+AGG 0.637968 1.2:-9505889 None:intergenic
TTAATATTGTAGGTGATGGA+AGG 0.640132 1.2:+9505198 MS.gene015953:intron
CCAATCACTATGGTATCAAG+AGG 0.641108 1.2:+9504987 MS.gene015953:CDS
CCAGTAGCAACAATAAGCCA+AGG 0.647996 1.2:-9503854 None:intergenic
GCAGCTACTGCTATACCTGA+AGG 0.661207 1.2:-9503515 None:intergenic
ATGCAATAATCTTAGCAACA+GGG 0.685349 1.2:+9505280 MS.gene015953:CDS
ATCAGCATAGGATTCCATGT+AGG 0.688016 1.2:-9503720 None:intergenic
TGAGCAAGGATTGTATACAG+TGG 0.697920 1.2:+9505906 MS.gene015953:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATTAATAAATTTATT+AGG + chr1.2:9505120-9505139 MS.gene015953:intron 0.0%
!! TGATATTATAAAAAAAAATG+CGG + chr1.2:9504124-9504143 MS.gene015953:intron 10.0%
!!! ATTTTTTTTTTTATTGATTC+AGG + chr1.2:9505822-9505841 MS.gene015953:intron 10.0%
!!! TTTGATATGTATATTTTTTT+AGG + chr1.2:9505155-9505174 MS.gene015953:intron 10.0%
!!! TTTTTTTTTTTATTGATTCA+GGG + chr1.2:9505823-9505842 MS.gene015953:intron 10.0%
!! AAAGAAATATTAAATGATGA+AGG - chr1.2:9504461-9504480 None:intergenic 15.0%
!! ATTATTAAAATTACCCAAAT+GGG - chr1.2:9504778-9504797 None:intergenic 15.0%
!!! AAAGAATAGTACTTTTTAAA+AGG - chr1.2:9505698-9505717 None:intergenic 15.0%
!!! AAGAATAGTACTTTTTAAAA+GGG - chr1.2:9505697-9505716 None:intergenic 15.0%
!!! GCAATATTTTATATGATTTA+AGG + chr1.2:9504835-9504854 MS.gene015953:intron 15.0%
!! AAAGAATAAAATCAGTTTCT+TGG + chr1.2:9505472-9505491 MS.gene015953:intron 20.0%
!! AAATGACAATTAAAAAGGAA+CGG + chr1.2:9504592-9504611 MS.gene015953:intron 20.0%
!! ATTGAAATTCGAAAGAAAAA+AGG - chr1.2:9504090-9504109 None:intergenic 20.0%
!! ATTGTTTAGTACTTAAAATG+AGG + chr1.2:9504732-9504751 MS.gene015953:intron 20.0%
!! GATTATTAAAATTACCCAAA+TGG - chr1.2:9504779-9504798 None:intergenic 20.0%
!! TAAATAATCAAGGGTAATAA+AGG + chr1.2:9504501-9504520 MS.gene015953:intron 20.0%
!! TTCTGAGTACAAAAATAAAA+AGG + chr1.2:9503964-9503983 MS.gene015953:CDS 20.0%
!! TTGAAATTCGAAAGAAAAAA+GGG - chr1.2:9504089-9504108 None:intergenic 20.0%
!!! AACTTGTCTACTAATTTTAA+TGG - chr1.2:9504932-9504951 None:intergenic 20.0%
!!! AATGATTTTTTCACTAAAGA+TGG + chr1.2:9505847-9505866 MS.gene015953:CDS 20.0%
!!! ATAAAACAGTACTAAACTTT+TGG + chr1.2:9505723-9505742 MS.gene015953:intron 20.0%
!!! ATATGTTATTTTTTCCCATT+TGG + chr1.2:9504761-9504780 MS.gene015953:intron 20.0%
!!! GTACAAAAATAAAAAGGTTT+TGG + chr1.2:9503970-9503989 MS.gene015953:CDS 20.0%
!!! TAGGTAAATGAAGTTTTAAA+CGG - chr1.2:9503625-9503644 None:intergenic 20.0%
!!! TATGTATATTTTTTTAGGCT+AGG + chr1.2:9505160-9505179 MS.gene015953:intron 20.0%
!!! TATGTTATTTTTTCCCATTT+GGG + chr1.2:9504762-9504781 MS.gene015953:intron 20.0%
! AAAAAAAATGCGGTTTAATG+TGG + chr1.2:9504134-9504153 MS.gene015953:intron 25.0%
! AAATCACGACAAAAAAATGA+TGG - chr1.2:9504287-9504306 None:intergenic 25.0%
! AATTAAATCCGGTAACATTA+AGG + chr1.2:9505084-9505103 MS.gene015953:CDS 25.0%
! CAAATAGCACAAATTAAATC+CGG + chr1.2:9505073-9505092 MS.gene015953:CDS 25.0%
! CATACAAGTGATTATAAATC+TGG + chr1.2:9503941-9503960 MS.gene015953:CDS 25.0%
! CTGAAGATATTACTAATCAA+TGG + chr1.2:9505980-9505999 MS.gene015953:CDS 25.0%
! CTGCAAAATGACAATTAAAA+AGG + chr1.2:9504587-9504606 MS.gene015953:intron 25.0%
! TAGCTATGGGATTATATAAA+TGG + chr1.2:9504903-9504922 MS.gene015953:CDS 25.0%
! TCTCTGCAATAAATAATCAA+GGG + chr1.2:9504492-9504511 MS.gene015953:intron 25.0%
! TTAATACATGTTTCGATTCA+TGG + chr1.2:9504217-9504236 MS.gene015953:intron 25.0%
! TTGATTAATATTGTAGGTGA+TGG + chr1.2:9505194-9505213 MS.gene015953:intron 25.0%
! TTGGGATTGATTAATATTGT+AGG + chr1.2:9505188-9505207 MS.gene015953:intron 25.0%
! TTTAATAAGGTCACTCATAA+AGG + chr1.2:9504668-9504687 MS.gene015953:intron 25.0%
!! AAGAAATGGTGCAAAATTTT+TGG + chr1.2:9505236-9505255 MS.gene015953:CDS 25.0%
!! ATTTTCAGTATTTTTCACCT+TGG + chr1.2:9503837-9503856 MS.gene015953:CDS 25.0%
!! TGTTTTTCTCTTCTTTTACA+TGG + chr1.2:9505787-9505806 MS.gene015953:intron 25.0%
!! TTGATTCAAGTTCTCAAATT+TGG + chr1.2:9503792-9503811 MS.gene015953:CDS 25.0%
!!! AATAAAAAGGTTTTGGTCAT+TGG + chr1.2:9503977-9503996 MS.gene015953:CDS 25.0%
!!! AATATCTTCAGCTATTTTGA+TGG - chr1.2:9505971-9505990 None:intergenic 25.0%
!!! TTTTTAGGCTAGGATTAATT+GGG + chr1.2:9505170-9505189 MS.gene015953:intron 25.0%
!!! TTTTTTAGGCTAGGATTAAT+TGG + chr1.2:9505169-9505188 MS.gene015953:intron 25.0%
AAAAAAAAGAAGCTGAACAC+AGG - chr1.2:9505571-9505590 None:intergenic 30.0%
AAGAAAAAGCAAAGTGTGTA+TGG + chr1.2:9503462-9503481 MS.gene015953:CDS 30.0%
AAGTGACCATTAAAAAGGAA+CGG - chr1.2:9504358-9504377 None:intergenic 30.0%
AATATCAAAGTGATCAGCAT+AGG - chr1.2:9503735-9503754 None:intergenic 30.0%
AGAACAGTTTGATTAAACCT+AGG - chr1.2:9503761-9503780 None:intergenic 30.0%
ATCACTTTGATATTCATCCT+AGG + chr1.2:9503741-9503760 MS.gene015953:CDS 30.0%
ATGCAATAATCTTAGCAACA+GGG + chr1.2:9505280-9505299 MS.gene015953:CDS 30.0%
ATTCTTCCAAGAGATATGTT+TGG + chr1.2:9504863-9504882 MS.gene015953:CDS 30.0%
CTCTCTGCAATAAATAATCA+AGG + chr1.2:9504491-9504510 MS.gene015953:intron 30.0%
GGTAGTTCACAAAAATGTTT+AGG - chr1.2:9503644-9503663 None:intergenic 30.0%
GTAACATACCTTAATGTTAC+CGG - chr1.2:9505095-9505114 None:intergenic 30.0%
GTGAAAGAGATAACAAGAAA+TGG + chr1.2:9505222-9505241 MS.gene015953:CDS 30.0%
TCAACATATGGAATAGCTAT+GGG + chr1.2:9504890-9504909 MS.gene015953:CDS 30.0%
TTAGTTTCAAGCTTCTTCTT+GGG + chr1.2:9504959-9504978 MS.gene015953:CDS 30.0%
! ATGTTTGGTTTCTCAACATA+TGG + chr1.2:9504878-9504897 MS.gene015953:CDS 30.0%
! GAAATGAACTGATGTTTTGT+AGG - chr1.2:9503701-9503720 None:intergenic 30.0%
! GATGGTTTTTGACAAAATTG+CGG - chr1.2:9504269-9504288 None:intergenic 30.0%
! TGATGTTTTGTAGGATACTT+AGG - chr1.2:9503692-9503711 None:intergenic 30.0%
! TTCAAGTTCTCAAATTTGGA+TGG + chr1.2:9503796-9503815 MS.gene015953:CDS 30.0%
! TTTTCCAACAATTCATGGTA+TGG + chr1.2:9503895-9503914 MS.gene015953:CDS 30.0%
!! AATGGTGCAAAATTTTTGGA+TGG + chr1.2:9505240-9505259 MS.gene015953:CDS 30.0%
!! ACTTGTGAGTTTGTTCTTTT+TGG + chr1.2:9504801-9504820 MS.gene015953:intron 30.0%
!! ATTTTTGGATGGACAAGAAA+AGG + chr1.2:9505251-9505270 MS.gene015953:CDS 30.0%
!! TAGCTAGAACTTTGAAATGA+CGG - chr1.2:9504321-9504340 None:intergenic 30.0%
!! TCCTTTTTAATGGTCACTTT+TGG + chr1.2:9504359-9504378 MS.gene015953:intron 30.0%
!! TTAATATTGTAGGTGATGGA+AGG + chr1.2:9505198-9505217 MS.gene015953:intron 30.0%
!!! ATGAAGTTTTAAACGGTCAT+AGG - chr1.2:9503618-9503637 None:intergenic 30.0%
!!! CACTTTGCTTTTTCTTTGAA+AGG - chr1.2:9503458-9503477 None:intergenic 30.0%
!!! CCTTTTTAATGGTCACTTTT+GGG + chr1.2:9504360-9504379 MS.gene015953:intron 30.0%
!!! TTGTTCTTTTTGGCTAACTT+TGG + chr1.2:9504811-9504830 MS.gene015953:intron 30.0%
AAAACTCCTGTACTTGATGT+TGG + chr1.2:9505049-9505068 MS.gene015953:CDS 35.0%
ACATCAGTTCATTTCCTACA+TGG + chr1.2:9503706-9503725 MS.gene015953:CDS 35.0%
ATAGAACTCAAACTTGCAAC+AGG + chr1.2:9505025-9505044 MS.gene015953:CDS 35.0%
ATTCATGGACCTATCATAGT+AGG + chr1.2:9503485-9503504 MS.gene015953:CDS 35.0%
ATTTGACCAACATCAAGTAC+AGG - chr1.2:9505058-9505077 None:intergenic 35.0%
CCATGAATTGTTGGAAAAAC+AGG - chr1.2:9503893-9503912 None:intergenic 35.0%
CCCAAAAGTGACCATTAAAA+AGG - chr1.2:9504363-9504382 None:intergenic 35.0%
CTCAACATATGGAATAGCTA+TGG + chr1.2:9504889-9504908 MS.gene015953:CDS 35.0%
CTTATGACCTATCACTATCT+AGG + chr1.2:9505387-9505406 MS.gene015953:intron 35.0%
GAGAAACCAAACATATCTCT+TGG - chr1.2:9504872-9504891 None:intergenic 35.0%
GATGCAATAATCTTAGCAAC+AGG + chr1.2:9505279-9505298 MS.gene015953:CDS 35.0%
GGATACTTAGGAAATGTTTG+AGG - chr1.2:9503680-9503699 None:intergenic 35.0%
GTTTGAGGAAAACTCATCAT+AGG - chr1.2:9503665-9503684 None:intergenic 35.0%
TAATCACTTGTATGAGCAAC+AGG - chr1.2:9503935-9503954 None:intergenic 35.0%
TGACAATTAAAAAGGAACGG+AGG + chr1.2:9504595-9504614 MS.gene015953:intron 35.0%
TGTTCCATACCATGAATTGT+TGG - chr1.2:9503902-9503921 None:intergenic 35.0%
TTTGACAAAATTGCGGTCAT+AGG - chr1.2:9504262-9504281 None:intergenic 35.0%
! AGTTCTATTGGACCAGTTTT+AGG - chr1.2:9505013-9505032 None:intergenic 35.0%
! CACATCGATTAAAGATGCAT+CGG - chr1.2:9504160-9504179 None:intergenic 35.0%
! CATGGTATGGAACATTTTCA+TGG + chr1.2:9503908-9503927 MS.gene015953:CDS 35.0%
! GTTAGTTTCAAGCTTCTTCT+TGG + chr1.2:9504958-9504977 MS.gene015953:CDS 35.0%
! GTTGCAAGTTTGAGTTCTAT+TGG - chr1.2:9505025-9505044 None:intergenic 35.0%
! TTTTTAACCTTGAGCCAAGT+AGG - chr1.2:9505321-9505340 None:intergenic 35.0%
!! CCTGTTTTTCCAACAATTCA+TGG + chr1.2:9503890-9503909 MS.gene015953:CDS 35.0%
!! TTCTGGAATGGAAGTTAGTT+TGG + chr1.2:9504009-9504028 MS.gene015953:CDS 35.0%
ACACAATGCTATGCCTCATT+TGG + chr1.2:9504042-9504061 MS.gene015953:CDS 40.0%
ACCTATCACTATCTAGGCTT+GGG + chr1.2:9505393-9505412 MS.gene015953:intron 40.0%
ATCAGCATAGGATTCCATGT+AGG - chr1.2:9503723-9503742 None:intergenic 40.0%
CCAATCACTATGGTATCAAG+AGG + chr1.2:9504987-9505006 MS.gene015953:CDS 40.0%
CCTCTTGATACCATAGTGAT+TGG - chr1.2:9504990-9505009 None:intergenic 40.0%
CTTCTCTCAAGAATGAGACT+CGG - chr1.2:9503563-9503582 None:intergenic 40.0%
GAGCAAGGATTGTATACAGT+GGG + chr1.2:9505907-9505926 MS.gene015953:CDS 40.0%
GCAAAGTGTGTATGGATTCA+TGG + chr1.2:9503470-9503489 MS.gene015953:CDS 40.0%
GCTGCTTGTTTATCAGAACA+AGG + chr1.2:9503533-9503552 MS.gene015953:CDS 40.0%
GTGATTGCATAGCTTCACTA+TGG + chr1.2:9503582-9503601 MS.gene015953:CDS 40.0%
TGACCATTAAAAAGGAACGG+AGG - chr1.2:9504355-9504374 None:intergenic 40.0%
TGAGCAAGGATTGTATACAG+TGG + chr1.2:9505906-9505925 MS.gene015953:CDS 40.0%
TTCACAAGAAGAGGTCTACA+TGG + chr1.2:9505931-9505950 MS.gene015953:CDS 40.0%
TTGGGAAACACCAATCACTA+TGG + chr1.2:9504977-9504996 MS.gene015953:CDS 40.0%
! CTTCCTCCGTTCCTTTTTAA+TGG + chr1.2:9504349-9504368 MS.gene015953:intron 40.0%
!! AAGGTTTTGGTCATTGGTTG+TGG + chr1.2:9503983-9504002 MS.gene015953:CDS 40.0%
!! AGGTTTTGGTCATTGGTTGT+GGG + chr1.2:9503984-9504003 MS.gene015953:CDS 40.0%
AAACACCCTTTCCTCATGGT+TGG + chr1.2:9505878-9505897 MS.gene015953:CDS 45.0%
ACAAGAGCAATGTGCCTACT+TGG + chr1.2:9505304-9505323 MS.gene015953:CDS 45.0%
ACCTTTCCAACCATGAGGAA+AGG - chr1.2:9505887-9505906 None:intergenic 45.0%
CCAAAAACACCCTTTCCTCA+TGG + chr1.2:9505874-9505893 MS.gene015953:CDS 45.0%
CCAGTAGCAACAATAAGCCA+AGG - chr1.2:9503857-9503876 None:intergenic 45.0%
CCTTGGCTTATTGTTGCTAC+TGG + chr1.2:9503854-9503873 MS.gene015953:CDS 45.0%
CCTTTCCAACCATGAGGAAA+GGG - chr1.2:9505886-9505905 None:intergenic 45.0%
GACCTATCACTATCTAGGCT+TGG + chr1.2:9505392-9505411 MS.gene015953:intron 45.0%
GAGTTTCGTGCAACCAAATG+AGG - chr1.2:9504058-9504077 None:intergenic 45.0%
GGTATCAAGAGGCCTAAAAC+TGG + chr1.2:9504998-9505017 MS.gene015953:CDS 45.0%
TCCCAAGCCTAGATAGTGAT+AGG - chr1.2:9505397-9505416 None:intergenic 45.0%
! ACAGTGGGTTTCACAAGAAG+AGG + chr1.2:9505922-9505941 MS.gene015953:CDS 45.0%
! GTCATTGGTTGTGGGAATTC+TGG + chr1.2:9503992-9504011 MS.gene015953:CDS 45.0%
! TGGTTGTGGGAATTCTGGAA+TGG + chr1.2:9503997-9504016 MS.gene015953:CDS 45.0%
!!! CCATGAGGAAAGGGTGTTTT+TGG - chr1.2:9505877-9505896 None:intergenic 45.0%
!! TATTTAAATATTAAAAAAAG+TGG - chr1.2:9505505-9505524 None:intergenic 5.0%
!!! TTATATTAATACTTTTAATA+AGG + chr1.2:9504655-9504674 MS.gene015953:intron 5.0%
CAATGTGCCTACTTGGCTCA+AGG + chr1.2:9505311-9505330 MS.gene015953:CDS 50.0%
CATGGTTGGAAAGGTGAGCA+AGG + chr1.2:9505892-9505911 MS.gene015953:CDS 50.0%
CCCTTTCCTCATGGTTGGAA+AGG + chr1.2:9505883-9505902 MS.gene015953:CDS 50.0%
GCAGCTACTGCTATACCTGA+AGG - chr1.2:9503518-9503537 None:intergenic 50.0%
GGACCAGCACCTACTATGAT+AGG - chr1.2:9503497-9503516 None:intergenic 50.0%
GGACCTATCATAGTAGGTGC+TGG + chr1.2:9503491-9503510 MS.gene015953:CDS 50.0%
TGCTCACCTTTCCAACCATG+AGG - chr1.2:9505892-9505911 None:intergenic 50.0%
!! ATAGTAGGTGCTGGTCCTTC+AGG + chr1.2:9503500-9503519 MS.gene015953:CDS 50.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 9503449 9506062 9503449 ID=MS.gene015953
chr1.2 mRNA 9503449 9506062 9503449 ID=MS.gene015953.t1;Parent=MS.gene015953
chr1.2 exon 9503449 9504078 9503449 ID=MS.gene015953.t1.exon1;Parent=MS.gene015953.t1
chr1.2 CDS 9503449 9504078 9503449 ID=cds.MS.gene015953.t1;Parent=MS.gene015953.t1
chr1.2 exon 9504857 9505105 9504857 ID=MS.gene015953.t1.exon2;Parent=MS.gene015953.t1
chr1.2 CDS 9504857 9505105 9504857 ID=cds.MS.gene015953.t1;Parent=MS.gene015953.t1
chr1.2 exon 9505210 9505332 9505210 ID=MS.gene015953.t1.exon3;Parent=MS.gene015953.t1
chr1.2 CDS 9505210 9505332 9505210 ID=cds.MS.gene015953.t1;Parent=MS.gene015953.t1
chr1.2 exon 9505844 9506062 9505844 ID=MS.gene015953.t1.exon4;Parent=MS.gene015953.t1
chr1.2 CDS 9505844 9506062 9505844 ID=cds.MS.gene015953.t1;Parent=MS.gene015953.t1
Gene Sequence

>MS.gene015953

ATGGATCCTTTCAAAGAAAAAGCAAAGTGTGTATGGATTCATGGACCTATCATAGTAGGTGCTGGTCCTTCAGGTATAGCAGTAGCTGCTTGTTTATCAGAACAAGGAGTACCGAGTCTCATTCTTGAGAGAAGTGATTGCATAGCTTCACTATGGCAAAATAGAACCTATGACCGTTTAAAACTTCATTTACCTAAACATTTTTGTGAACTACCTATGATGAGTTTTCCTCAAACATTTCCTAAGTATCCTACAAAACATCAGTTCATTTCCTACATGGAATCCTATGCTGATCACTTTGATATTCATCCTAGGTTTAATCAAACTGTTCTTAGTGCTGAGTTTGATTCAAGTTCTCAAATTTGGATGGTTAGAACTAAAGAAGCTGATTTTCAGTATTTTTCACCTTGGCTTATTGTTGCTACTGGTGAAAATGCTGAACCTGTTTTTCCAACAATTCATGGTATGGAACATTTTCATGGTCCTGTTGCTCATACAAGTGATTATAAATCTGGTTCTGAGTACAAAAATAAAAAGGTTTTGGTCATTGGTTGTGGGAATTCTGGAATGGAAGTTAGTTTGGATCTTTGTAGACACAATGCTATGCCTCATTTGGTTGCACGAAACTCAGTAAGTTCCCTTTTTTCTTTCGAATTTCAATTGCGTCACAATCTTTGATATTATAAAAAAAAATGCGGTTTAATGTGGCCGATGCATCTTTAATCGATGTGACATGCACAAATCTTTTGAGTTAAAATATCAAAAAATTTAATACATGTTTCGATTCATGGTGAGTTTGATAAGATTAGACCTATGACCGCAATTTTGTCAAAAACCATCATTTTTTTGTCGTGATTTTGCTAAATTCACCGTCATTTCAAAGTTCTAGCTAAGTTTGTACTTCCTCCGTTCCTTTTTAATGGTCACTTTTGGGTTTTTTTACACAAACTAAGACAGCAATTACATTTTACTACTTTTGATACAACAATTTATCTTTCTTCTATAATAACCTTCATCATTTAATATTTCTTTTCATATATTTCTCTCTGCAATAAATAATCAAGGGTAATAAAGGCAAAACAACATTTAATGTTGTATTGAATTTTGAAAGTGACAGTTAATTAGAAACAAAAAAATTCTGCAAAATGACAATTAAAAAGGAACGGAGGAGTAGTACAATTTTATGTTGTGAAACTTTTTTTTATATTATATTAATACTTTTAATAAGGTCACTCATAAAGGTAATTGTTTAATATGTAATCATAGATCATGATAGATATATAATTGTTTAGTACTTAAAATGAGGTCATGTATATGTTATTTTTTCCCATTTGGGTAATTTTAATAATCAAACTTGTGAGTTTGTTCTTTTTGGCTAACTTTGGTGCAATATTTTATATGATTTAAGGTACATATTCTTCCAAGAGATATGTTTGGTTTCTCAACATATGGAATAGCTATGGGATTATATAAATGGCTTCCATTAAAATTAGTAGACAAGTTTCTCTTGTTAGTTTCAAGCTTCTTCTTGGGAAACACCAATCACTATGGTATCAAGAGGCCTAAAACTGGTCCAATAGAACTCAAACTTGCAACAGGAAAAACTCCTGTACTTGATGTTGGTCAAATAGCACAAATTAAATCCGGTAACATTAAGGTATGTTACTATTTTTTATATTAATAAATTTATTAGGTTTGAATTTAAATTTGATATGTATATTTTTTTAGGCTAGGATTAATTGGGATTGATTAATATTGTAGGTGATGGAAGGTGTGAAAGAGATAACAAGAAATGGTGCAAAATTTTTGGATGGACAAGAAAAGGAATTTGATGCAATAATCTTAGCAACAGGGTACAAGAGCAATGTGCCTACTTGGCTCAAGGTTAAAAATTGATCTGTTATGTTACGTTTTTAGCTTTATCTTATTATTGAAACACTTATGACCTATCACTATCTAGGCTTGGGACACATGCAGAGAGCAGAAACATACAAATGTCTTCTTTTCTTCATGCAAAACGATCAAAGAATAAAATCAGTTTCTTGGTTCTCTACCACTTTTTTTAATATTTAAATAATTTTTTCACTAATTAAAATATTATATATAAAAAATAAAAAAACCTGTGTTCAGCTTCTTTTTTTTTTTTTTTCATTTTAATATATAACTCTGCATTCATTTCATTGTGACGTTCTATGATGTGTAATAATCTGATGAAATATCTATCTTGCAAGCAACTTGTGAAAGACCCTTTTAAAAAGTACTATTCTTTTTGTCATAAAACAGTACTAAACTTTTGGTCAATTCTTTTTGCATCAAACTAATTATTTAATTCAACTTTTGTTTTTCTCTTCTTTTACATGGCTTATTTTAAATATTTTTTTTTTTATTGATTCAGGGTAATGATTTTTTCACTAAAGATGGAATGCCAAAAACACCCTTTCCTCATGGTTGGAAAGGTGAGCAAGGATTGTATACAGTGGGTTTCACAAGAAGAGGTCTACATGGAACATACTTTGATGCCATCAAAATAGCTGAAGATATTACTAATCAATGGAAAGCATTAAAGAACAAGAGTTGTTGTGATTCACATATCATACTACTCAATAATTCATAA
Protein sequence

>MS.gene015953.t1

MDPFKEKAKCVWIHGPIIVGAGPSGIAVAACLSEQGVPSLILERSDCIASLWQNRTYDRLKLHLPKHFCELPMMSFPQTFPKYPTKHQFISYMESYADHFDIHPRFNQTVLSAEFDSSSQIWMVRTKEADFQYFSPWLIVATGENAEPVFPTIHGMEHFHGPVAHTSDYKSGSEYKNKKVLVIGCGNSGMEVSLDLCRHNAMPHLVARNSVHILPRDMFGFSTYGIAMGLYKWLPLKLVDKFLLLVSSFFLGNTNHYGIKRPKTGPIELKLATGKTPVLDVGQIAQIKSGNIKVMEGVKEITRNGAKFLDGQEKEFDAIILATGYKSNVPTWLKGNDFFTKDGMPKTPFPHGWKGEQGLYTVGFTRRGLHGTYFDAIKIAEDITNQWKALKNKSCCDSHIILLNNS