Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031178.t1 | XP_003603602.1 | 96.9 | 425 | 11 | 1 | 1 | 425 | 1 | 423 | 9.70E-243 | 849 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031178.t1 | Q8VZ59 | 69.5 | 419 | 113 | 4 | 1 | 416 | 1 | 407 | 5.1e-168 | 592.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031178.t1 | G7J3E6 | 96.9 | 425 | 11 | 1 | 1 | 425 | 1 | 423 | 7.0e-243 | 849.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene031178 | MS.gene027681 | PPI |
| MS.gene031178 | MS.gene064951 | PPI |
| MS.gene031178 | MS.gene44331 | PPI |
| MS.gene031178 | MS.gene059027 | PPI |
| MS.gene031178 | MS.gene86173 | PPI |
| MS.gene24021 | MS.gene031178 | PPI |
| MS.gene031178 | MS.gene61665 | PPI |
| MS.gene031178 | MS.gene53594 | PPI |
| MS.gene51580 | MS.gene031178 | PPI |
| MS.gene031178 | MS.gene038029 | PPI |
| MS.gene031178 | MS.gene23537 | PPI |
| MS.gene031178 | MS.gene09884 | PPI |
| MS.gene94810 | MS.gene031178 | PPI |
| MS.gene031178 | MS.gene06418 | PPI |
| MS.gene031178 | MS.gene44332 | PPI |
| MS.gene031178 | MS.gene60245 | PPI |
| MS.gene031178 | MS.gene061851 | PPI |
| MS.gene031178 | MS.gene29205 | PPI |
| MS.gene031178 | MS.gene049295 | PPI |
| MS.gene031178 | MS.gene054944 | PPI |
| MS.gene031178 | MS.gene64265 | PPI |
| MS.gene031178 | MS.gene013322 | PPI |
| MS.gene031178 | MS.gene018590 | PPI |
| MS.gene031178 | MS.gene57685 | PPI |
| MS.gene031178 | MS.gene015953 | PPI |
| MS.gene031178 | MS.gene36879 | PPI |
| MS.gene031178 | MS.gene019484 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031178.t1 | MTR_3g109520 | 96.941 | 425 | 11 | 1 | 1 | 425 | 1 | 423 | 0.0 | 849 |
| MS.gene031178.t1 | MTR_1g008380 | 76.887 | 424 | 96 | 2 | 1 | 423 | 1 | 423 | 0.0 | 661 |
| MS.gene031178.t1 | MTR_6g086870 | 66.667 | 396 | 129 | 1 | 22 | 414 | 1 | 396 | 0.0 | 559 |
| MS.gene031178.t1 | MTR_1g069275 | 61.000 | 400 | 152 | 3 | 25 | 423 | 9 | 405 | 0.0 | 510 |
| MS.gene031178.t1 | MTR_7g099330 | 59.949 | 392 | 149 | 3 | 33 | 423 | 16 | 400 | 3.78e-174 | 493 |
| MS.gene031178.t1 | MTR_1g046230 | 59.391 | 394 | 157 | 2 | 32 | 423 | 15 | 407 | 4.64e-173 | 491 |
| MS.gene031178.t1 | MTR_1g011630 | 59.788 | 378 | 147 | 3 | 36 | 413 | 11 | 383 | 9.83e-171 | 484 |
| MS.gene031178.t1 | MTR_7g099160 | 57.595 | 316 | 126 | 3 | 109 | 423 | 213 | 521 | 9.50e-126 | 374 |
| MS.gene031178.t1 | MTR_7g107690 | 44.974 | 378 | 202 | 2 | 42 | 418 | 9 | 381 | 2.63e-120 | 355 |
| MS.gene031178.t1 | MTR_8g432640 | 45.845 | 373 | 196 | 2 | 42 | 413 | 7 | 374 | 2.68e-120 | 355 |
| MS.gene031178.t1 | MTR_5g033260 | 45.576 | 373 | 197 | 2 | 42 | 413 | 7 | 374 | 9.80e-119 | 351 |
| MS.gene031178.t1 | MTR_7g107710 | 46.354 | 384 | 198 | 4 | 42 | 423 | 7 | 384 | 9.91e-119 | 351 |
| MS.gene031178.t1 | MTR_3g088925 | 43.636 | 385 | 211 | 2 | 42 | 425 | 8 | 387 | 3.14e-115 | 343 |
| MS.gene031178.t1 | MTR_3g088945 | 43.377 | 385 | 212 | 2 | 42 | 425 | 8 | 387 | 1.90e-114 | 340 |
| MS.gene031178.t1 | MTR_3g088955 | 43.636 | 385 | 211 | 2 | 42 | 425 | 8 | 387 | 1.15e-113 | 339 |
| MS.gene031178.t1 | MTR_4g051642 | 43.421 | 380 | 208 | 3 | 42 | 420 | 8 | 381 | 4.92e-112 | 335 |
| MS.gene031178.t1 | MTR_3g096030 | 39.205 | 176 | 83 | 1 | 42 | 217 | 7 | 158 | 1.94e-39 | 139 |
| MS.gene031178.t1 | MTR_3g437580 | 25.769 | 260 | 147 | 7 | 43 | 267 | 15 | 263 | 3.86e-17 | 82.8 |
| MS.gene031178.t1 | MTR_8g037880 | 25.943 | 212 | 124 | 6 | 43 | 226 | 6 | 212 | 5.32e-17 | 83.2 |
| MS.gene031178.t1 | MTR_8g037910 | 25.238 | 210 | 127 | 4 | 43 | 226 | 6 | 211 | 5.58e-17 | 80.9 |
| MS.gene031178.t1 | MTR_3g437580 | 25.000 | 240 | 135 | 6 | 43 | 247 | 15 | 244 | 8.37e-17 | 82.4 |
| MS.gene031178.t1 | MTR_8g037910 | 25.238 | 210 | 127 | 4 | 43 | 226 | 6 | 211 | 9.23e-17 | 81.3 |
| MS.gene031178.t1 | MTR_8g037910 | 25.238 | 210 | 127 | 4 | 43 | 226 | 6 | 211 | 2.05e-16 | 81.3 |
| MS.gene031178.t1 | MTR_2g450310 | 28.800 | 250 | 132 | 13 | 43 | 251 | 7 | 251 | 7.08e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031178.t1 | AT5G25620 | 68.471 | 425 | 119 | 4 | 1 | 422 | 1 | 413 | 0.0 | 590 |
| MS.gene031178.t1 | AT5G25620 | 68.471 | 425 | 119 | 4 | 1 | 422 | 1 | 413 | 0.0 | 589 |
| MS.gene031178.t1 | AT4G13260 | 65.770 | 409 | 128 | 1 | 7 | 415 | 6 | 402 | 0.0 | 557 |
| MS.gene031178.t1 | AT4G28720 | 58.706 | 402 | 162 | 3 | 25 | 423 | 9 | 409 | 1.11e-176 | 500 |
| MS.gene031178.t1 | AT1G04610 | 57.357 | 401 | 167 | 2 | 26 | 423 | 22 | 421 | 8.02e-172 | 488 |
| MS.gene031178.t1 | AT1G04180 | 60.560 | 393 | 151 | 4 | 31 | 422 | 15 | 404 | 2.07e-171 | 486 |
| MS.gene031178.t1 | AT5G43890 | 59.750 | 400 | 157 | 4 | 27 | 423 | 10 | 408 | 5.88e-171 | 486 |
| MS.gene031178.t1 | AT5G11320 | 59.791 | 383 | 147 | 2 | 31 | 413 | 7 | 382 | 1.18e-170 | 484 |
| MS.gene031178.t1 | AT2G33230 | 60.660 | 394 | 150 | 2 | 33 | 423 | 24 | 415 | 1.90e-170 | 484 |
| MS.gene031178.t1 | AT4G32540 | 56.061 | 396 | 165 | 4 | 19 | 413 | 1 | 388 | 1.16e-162 | 464 |
| MS.gene031178.t1 | AT4G32540 | 56.030 | 398 | 164 | 5 | 19 | 413 | 1 | 390 | 3.00e-161 | 461 |
| MS.gene031178.t1 | AT4G13260 | 64.780 | 318 | 100 | 1 | 7 | 324 | 6 | 311 | 4.86e-148 | 423 |
| MS.gene031178.t1 | AT5G11320 | 59.760 | 333 | 128 | 1 | 31 | 363 | 7 | 333 | 3.15e-147 | 423 |
| MS.gene031178.t1 | AT4G13260 | 68.493 | 292 | 92 | 0 | 124 | 415 | 8 | 299 | 2.36e-142 | 409 |
| MS.gene031178.t1 | AT1G21430 | 49.202 | 376 | 180 | 5 | 42 | 414 | 10 | 377 | 1.01e-124 | 367 |
| MS.gene031178.t1 | AT1G48910 | 45.358 | 377 | 200 | 2 | 42 | 417 | 6 | 377 | 1.94e-120 | 355 |
| MS.gene031178.t1 | AT5G07800 | 26.840 | 231 | 135 | 6 | 30 | 226 | 5 | 235 | 1.70e-17 | 84.7 |
| MS.gene031178.t1 | AT5G61290 | 28.326 | 233 | 122 | 8 | 43 | 234 | 18 | 246 | 3.00e-17 | 84.0 |
| MS.gene031178.t1 | AT1G12140 | 27.586 | 261 | 144 | 8 | 33 | 259 | 5 | 254 | 1.55e-14 | 75.5 |
| MS.gene031178.t1 | AT1G12140 | 27.586 | 261 | 144 | 8 | 33 | 259 | 5 | 254 | 1.55e-14 | 75.5 |
| MS.gene031178.t1 | AT1G65860 | 27.103 | 214 | 122 | 7 | 43 | 226 | 15 | 224 | 7.33e-14 | 73.6 |
| MS.gene031178.t1 | AT1G62620 | 24.766 | 214 | 131 | 5 | 43 | 226 | 15 | 228 | 2.48e-13 | 71.6 |
| MS.gene031178.t1 | AT1G62620 | 24.766 | 214 | 131 | 5 | 43 | 226 | 15 | 228 | 5.18e-13 | 70.9 |
| MS.gene031178.t1 | AT1G63370 | 24.299 | 214 | 132 | 5 | 43 | 226 | 15 | 228 | 5.33e-13 | 70.1 |
| MS.gene031178.t1 | AT1G12130 | 25.000 | 200 | 119 | 6 | 57 | 226 | 29 | 227 | 7.67e-13 | 70.5 |
| MS.gene031178.t1 | AT1G63370 | 24.299 | 214 | 132 | 5 | 43 | 226 | 15 | 228 | 1.13e-12 | 69.7 |
| MS.gene031178.t1 | AT1G12200 | 25.490 | 204 | 117 | 6 | 57 | 227 | 30 | 231 | 2.14e-12 | 68.6 |
| MS.gene031178.t1 | AT1G12200 | 25.490 | 204 | 117 | 6 | 57 | 227 | 30 | 231 | 2.55e-12 | 68.9 |
| MS.gene031178.t1 | AT1G12140 | 27.203 | 261 | 143 | 9 | 33 | 259 | 5 | 252 | 6.73e-12 | 67.4 |
| MS.gene031178.t1 | AT1G12160 | 23.750 | 240 | 145 | 8 | 43 | 254 | 14 | 243 | 8.18e-12 | 67.4 |
Find 96 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTGTGAATTACCCTTTA+TGG | 0.057569 | 3.4:+94615641 | MS.gene031178:CDS |
| GTTGTTGGTTGTGGTAATTC+TGG | 0.228655 | 3.4:+94615996 | MS.gene031178:CDS |
| GCTGAATTTGATGGTAAAAT+TGG | 0.229798 | 3.4:+94615777 | MS.gene031178:CDS |
| ATTGAAGGTGTAGATGAATT+TGG | 0.230080 | 3.4:+94615909 | MS.gene031178:CDS |
| TGCTAGGAAAATCAACTTTC+GGG | 0.237487 | 3.4:+94616986 | MS.gene031178:CDS |
| GGTAATTCACAGAATTGTTT+TGG | 0.279240 | 3.4:-94615633 | None:intergenic |
| CTAATTGTGTGGCTTCATTA+TGG | 0.292482 | 3.4:+94615574 | MS.gene031178:CDS |
| AATGTGTCCACCTTTAATTT+TGG | 0.293841 | 3.4:-94617187 | None:intergenic |
| GAAGATTATGCAGAGAGTTT+TGG | 0.298205 | 3.4:+94615720 | MS.gene031178:CDS |
| ATGAATTTGGAGGGGTTATA+AGG | 0.303286 | 3.4:+94615922 | MS.gene031178:CDS |
| TGGGTTGGATCGTCCTCGTT+TGG | 0.307911 | 3.4:+94617104 | MS.gene031178:CDS |
| GGTACCCTTGCCAAAATTAA+AGG | 0.309195 | 3.4:+94617177 | MS.gene031178:CDS |
| AATTAAAGGTGGACACATTA+AGG | 0.324307 | 3.4:+94617191 | MS.gene031178:CDS |
| TTCTCTTGTTGTTCGAGATT+CGG | 0.332436 | 3.4:+94616061 | MS.gene031178:CDS |
| GGTTCTTGCTCATAGTTTCA+TGG | 0.338911 | 3.4:+94617055 | MS.gene031178:CDS |
| GTTTAGAGGGAAGAAAGTTT+TGG | 0.342078 | 3.4:+94615974 | MS.gene031178:CDS |
| TCATCTACACCTTCAATATT+AGG | 0.342806 | 3.4:-94615903 | None:intergenic |
| ATCGTAGGAGCAGGACCTTC+TGG | 0.343082 | 3.4:+94615492 | MS.gene031178:CDS |
| CCACTTGGAAATGGCTTCAT+AGG | 0.347378 | 3.4:-94619685 | None:intergenic |
| ATGCTAGGAAAATCAACTTT+CGG | 0.354338 | 3.4:+94616985 | MS.gene031178:CDS |
| GGGACTGCAAGGTGCCTCTA+TGG | 0.365215 | 3.4:+94619753 | MS.gene031178:CDS |
| CCTTTCCACCCACTTGGAAA+TGG | 0.368720 | 3.4:-94619694 | None:intergenic |
| ATCTGAGGGGAATTCCATAA+AGG | 0.386429 | 3.4:-94615655 | None:intergenic |
| ACAAAAGCAATGTTCCCTAT+TGG | 0.386603 | 3.4:+94618305 | MS.gene031178:CDS |
| GGGTTGGATCGTCCTCGTTT+GGG | 0.392628 | 3.4:+94617105 | MS.gene031178:CDS |
| ATATCATACCTTGAGCCAAT+AGG | 0.393501 | 3.4:-94618320 | None:intergenic |
| CTTGGTGACACTGCTCAACT+TGG | 0.407645 | 3.4:+94617084 | MS.gene031178:CDS |
| GGAAGAGGATATGTTCTCTA+AGG | 0.414461 | 3.4:+94619651 | MS.gene031178:intron |
| TATCATACCTTGAGCCAATA+GGG | 0.429202 | 3.4:-94618319 | None:intergenic |
| GTTACTCAAGTGGTTTCCAT+TGG | 0.431641 | 3.4:+94617020 | MS.gene031178:CDS |
| TTACTCAAGTGGTTTCCATT+GGG | 0.437213 | 3.4:+94617021 | MS.gene031178:CDS |
| CGTCGTCGCGTGTTTGTTCA+AGG | 0.449077 | 3.4:+94615462 | MS.gene031178:CDS |
| CGGAGAGGTTCTTGAGTTGA+AGG | 0.449506 | 3.4:-94617131 | None:intergenic |
| ATAGTTTCATGGCTTATGCT+TGG | 0.449906 | 3.4:+94617066 | MS.gene031178:CDS |
| TATTGCTTAAGAGAGTTAGA+AGG | 0.452128 | 3.4:+94615372 | MS.gene031178:CDS |
| TTCCATTGGGACTTGTCGAT+CGG | 0.454350 | 3.4:+94617034 | MS.gene031178:CDS |
| GATGGCATCATATTGGCAAC+CGG | 0.459043 | 3.4:+94618280 | MS.gene031178:CDS |
| GTGCAAAATGCTGAATTTGA+TGG | 0.462235 | 3.4:+94615768 | MS.gene031178:CDS |
| TTGATGGTAAAATTGGTTGT+TGG | 0.471687 | 3.4:+94615784 | MS.gene031178:CDS |
| CACACAGTGGAATTCGTAGA+TGG | 0.480947 | 3.4:+94618241 | MS.gene031178:CDS |
| AAAAGTGGTGAAGAGTTTAG+AGG | 0.487823 | 3.4:+94615960 | MS.gene031178:CDS |
| TCTGAGGGGAATTCCATAAA+GGG | 0.494865 | 3.4:-94615654 | None:intergenic |
| AAAGTGGTGAAGAGTTTAGA+GGG | 0.496476 | 3.4:+94615961 | MS.gene031178:CDS |
| TGACACTGCTCAACTTGGGT+TGG | 0.497517 | 3.4:+94617089 | MS.gene031178:CDS |
| AATGTCATCAGCTATTCTCT+TGG | 0.503005 | 3.4:-94619779 | None:intergenic |
| TGGTTGTGGTAATTCTGGTA+TGG | 0.510440 | 3.4:+94616001 | MS.gene031178:CDS |
| ACAACAGTTCATAAAGTACT+TGG | 0.510479 | 3.4:+94615698 | MS.gene031178:CDS |
| TGTCCATGTGGTTACTCAAG+TGG | 0.513763 | 3.4:+94617010 | MS.gene031178:CDS |
| GATATGTTCTCTAAGGAAGA+TGG | 0.515584 | 3.4:+94619658 | MS.gene031178:CDS |
| CGTTGGTTGATCGTTGCGAC+CGG | 0.515903 | 3.4:+94615858 | MS.gene031178:CDS |
| CTACGGAATATGTTTGTCGT+TGG | 0.522172 | 3.4:+94615841 | MS.gene031178:CDS |
| CATACAAGTTTGTATAAAAG+TGG | 0.522680 | 3.4:+94615945 | MS.gene031178:CDS |
| TCGCGTGTTTGTTCAAGGAC+CGG | 0.525756 | 3.4:+94615467 | MS.gene031178:CDS |
| GAAGGTGTAGATGAATTTGG+AGG | 0.528940 | 3.4:+94615912 | MS.gene031178:CDS |
| AAGGTGTAGATGAATTTGGA+GGG | 0.531621 | 3.4:+94615913 | MS.gene031178:CDS |
| CTTCAACTCAAGAACCTCTC+CGG | 0.537129 | 3.4:+94617132 | MS.gene031178:CDS |
| GGAGAGGTTCTTGAGTTGAA+GGG | 0.547836 | 3.4:-94617130 | None:intergenic |
| TTGGTGACACTGCTCAACTT+GGG | 0.549242 | 3.4:+94617085 | MS.gene031178:CDS |
| GCTGTTGTGCCTAATATTGA+AGG | 0.549425 | 3.4:+94615894 | MS.gene031178:CDS |
| TATTCTCTTGGCATCCATAG+AGG | 0.550970 | 3.4:-94619767 | None:intergenic |
| GGGTATGTTGGGAAATCTGA+GGG | 0.551955 | 3.4:-94615669 | None:intergenic |
| CCATTTCCAAGTGGGTGGAA+AGG | 0.556864 | 3.4:+94619694 | MS.gene031178:CDS |
| CAACTTTCGGGTTGTCCATG+TGG | 0.556906 | 3.4:+94616998 | MS.gene031178:CDS |
| AACAGCTTCTGCATTCTCAC+CGG | 0.560263 | 3.4:-94615877 | None:intergenic |
| TTCCTAGCATCTCTCGTGGT+AGG | 0.560936 | 3.4:-94616972 | None:intergenic |
| GGTCCTGCTCCTACGATCAC+CGG | 0.561323 | 3.4:-94615486 | None:intergenic |
| TAGTAAAGGGGATGTAACTA+CGG | 0.564472 | 3.4:+94615824 | MS.gene031178:CDS |
| AGGTACGACCAAGCATAAAA+CGG | 0.569581 | 3.4:+94618209 | MS.gene031178:intron |
| GGACCGGTGATCGTAGGAGC+AGG | 0.570039 | 3.4:+94615483 | MS.gene031178:CDS |
| CTATGAAGCCATTTCCAAGT+GGG | 0.571956 | 3.4:+94619686 | MS.gene031178:CDS |
| AGGTGTAGATGAATTTGGAG+GGG | 0.583926 | 3.4:+94615914 | MS.gene031178:CDS |
| CAAGAGAAGGAGTAGCATCA+TGG | 0.589521 | 3.4:-94616046 | None:intergenic |
| AGGGTATGTTGGGAAATCTG+AGG | 0.590255 | 3.4:-94615670 | None:intergenic |
| GTTCAAGGACCGGTGATCGT+AGG | 0.596331 | 3.4:+94615477 | MS.gene031178:CDS |
| AGGGTACCCACATCTAAGAC+AGG | 0.599272 | 3.4:-94617162 | None:intergenic |
| GAGAGGTTCTTGAGTTGAAG+GGG | 0.600506 | 3.4:-94617129 | None:intergenic |
| AAAACTCCTGTCTTAGATGT+GGG | 0.603155 | 3.4:+94617156 | MS.gene031178:CDS |
| TGAAGCCATTTCCAAGTGGG+TGG | 0.610400 | 3.4:+94619689 | MS.gene031178:CDS |
| CAATGTTCCCTATTGGCTCA+AGG | 0.610422 | 3.4:+94618312 | MS.gene031178:CDS |
| TGCACTGTCTCATTAAACCG+TGG | 0.610645 | 3.4:-94615750 | None:intergenic |
| AACCGATCGACAAGTCCCAA+TGG | 0.612719 | 3.4:-94617036 | None:intergenic |
| GAATCTCGAACAACAAGAGA+AGG | 0.614342 | 3.4:-94616059 | None:intergenic |
| ACCCTTGCCAAAATTAAAGG+TGG | 0.619165 | 3.4:+94617180 | MS.gene031178:CDS |
| ATGAAGACGTAATCGATCGT+AGG | 0.621938 | 3.4:-94615607 | None:intergenic |
| GATCTTTCTAGTATTACACA+TGG | 0.634588 | 3.4:-94615552 | None:intergenic |
| CAGTGGAATTCGTAGATGGA+AGG | 0.636435 | 3.4:+94618245 | MS.gene031178:CDS |
| TTAGAAGCTGAAGCAAAGCA+TGG | 0.637004 | 3.4:+94619811 | MS.gene031178:CDS |
| GTCCTACCACGAGAGATGCT+AGG | 0.644002 | 3.4:+94616970 | MS.gene031178:CDS |
| CAACAAATCATCATCAACAA+CGG | 0.644186 | 3.4:+94615437 | MS.gene031178:CDS |
| GCAGCTGCTGCTAAACCAGA+AGG | 0.646911 | 3.4:-94615507 | None:intergenic |
| ACTAGAAAGATCTAATTGTG+TGG | 0.651949 | 3.4:+94615563 | MS.gene031178:CDS |
| CCTATGAAGCCATTTCCAAG+TGG | 0.662153 | 3.4:+94619685 | MS.gene031178:CDS |
| AGTTGAAGGGGACCCAAACG+AGG | 0.670978 | 3.4:-94617117 | None:intergenic |
| AAACCACTTGAGTAACCACA+TGG | 0.674308 | 3.4:-94617013 | None:intergenic |
| GGTATGTTGGGAAATCTGAG+GGG | 0.693219 | 3.4:-94615668 | None:intergenic |
| ACGGTTAAAACGTCACACAG+TGG | 0.719614 | 3.4:+94618228 | MS.gene031178:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAATTATATTATTT+TGG | - | chr3.4:94616409-94616428 | None:intergenic | 0.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr3.4:94618487-94618506 | MS.gene031178:intron | 10.0% |
| !! | AATCTAATGAAAATAATAAT+GGG | - | chr3.4:94618106-94618125 | None:intergenic | 10.0% |
| !! | ATAAATTATATAATATATGC+AGG | + | chr3.4:94619630-94619649 | MS.gene031178:intron | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr3.4:94618486-94618505 | MS.gene031178:intron | 10.0% |
| !! | TAATCTAATGAAAATAATAA+TGG | - | chr3.4:94618107-94618126 | None:intergenic | 10.0% |
| !!! | ATTAATTGTTTCTTATAATA+AGG | + | chr3.4:94618662-94618681 | MS.gene031178:intron | 10.0% |
| !!! | TAAGAAACAATTAATTTTTT+TGG | - | chr3.4:94618657-94618676 | None:intergenic | 10.0% |
| !!! | TATCATTATTTAATTTACTA+TGG | + | chr3.4:94616923-94616942 | MS.gene031178:intron | 10.0% |
| !!! | TCAAAATTACATTTTTTATT+GGG | - | chr3.4:94616449-94616468 | None:intergenic | 10.0% |
| !!! | TGTACTAAATAAATTTTATT+TGG | + | chr3.4:94619595-94619614 | MS.gene031178:intron | 10.0% |
| !!! | TTCAAAATTACATTTTTTAT+TGG | - | chr3.4:94616450-94616469 | None:intergenic | 10.0% |
| !! | AAAATTGTGTCAATTAAATT+GGG | - | chr3.4:94618451-94618470 | None:intergenic | 15.0% |
| !! | AAATAAGAAACCTAAAAAAT+TGG | - | chr3.4:94616377-94616396 | None:intergenic | 15.0% |
| !! | AAATGGAAATTAATTAAACT+AGG | - | chr3.4:94616354-94616373 | None:intergenic | 15.0% |
| !! | AAATTAATTAAACTAGGTTT+GGG | - | chr3.4:94616348-94616367 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr3.4:94618488-94618507 | MS.gene031178:intron | 15.0% |
| !! | ATAGTACAATAATTAAATGA+TGG | + | chr3.4:94619549-94619568 | MS.gene031178:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr3.4:94618700-94618719 | MS.gene031178:intron | 15.0% |
| !! | GAAAAAAATTAAAGTTGTAT+TGG | - | chr3.4:94618907-94618926 | None:intergenic | 15.0% |
| !! | TATAAATAAGAAACTAATAG+TGG | + | chr3.4:94617624-94617643 | MS.gene031178:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr3.4:94618699-94618718 | MS.gene031178:intron | 15.0% |
| !! | TGAACAAAAAATTCTAAATA+AGG | - | chr3.4:94616209-94616228 | None:intergenic | 15.0% |
| !! | TTCAAATTTCAATGAAATAT+TGG | - | chr3.4:94617384-94617403 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | - | chr3.4:94618867-94618886 | None:intergenic | 15.0% |
| !!! | TTTTATAAATATTTTCTCGA+TGG | + | chr3.4:94617590-94617609 | MS.gene031178:intron | 15.0% |
| !!! | TTTTTTGAACAAATCTATTT+CGG | - | chr3.4:94616582-94616601 | None:intergenic | 15.0% |
| !! | AAAAAAACCTAAAAATCGAT+TGG | + | chr3.4:94618174-94618193 | MS.gene031178:intron | 20.0% |
| !! | AAAGCATAAAGGAAATAATT+AGG | - | chr3.4:94617652-94617671 | None:intergenic | 20.0% |
| !! | AAATGGAATGAAATAATCAT+TGG | - | chr3.4:94619043-94619062 | None:intergenic | 20.0% |
| !! | AATTGTGACCAAATTAAAAT+AGG | - | chr3.4:94619483-94619502 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr3.4:94618732-94618751 | MS.gene031178:intron | 20.0% |
| !! | ATATATAAAAAAGAGAGAGA+AGG | - | chr3.4:94617697-94617716 | None:intergenic | 20.0% |
| !! | ATTAAAAATCAAATTTGTGG+AGG | - | chr3.4:94616481-94616500 | None:intergenic | 20.0% |
| !! | ATTGTGACCAAATTAAAATA+GGG | - | chr3.4:94619482-94619501 | None:intergenic | 20.0% |
| !! | ATTTCAGATATAAAGATGTT+TGG | + | chr3.4:94619500-94619519 | MS.gene031178:intron | 20.0% |
| !! | CAAAATTGTGTCAATTAAAT+TGG | - | chr3.4:94618452-94618471 | None:intergenic | 20.0% |
| !! | GAAATTAATTAAACTAGGTT+TGG | - | chr3.4:94616349-94616368 | None:intergenic | 20.0% |
| !! | GAGATTAAAAATCAAATTTG+TGG | - | chr3.4:94616484-94616503 | None:intergenic | 20.0% |
| !! | GCTAATCAACAAAAAAAAAT+TGG | + | chr3.4:94617853-94617872 | MS.gene031178:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | + | chr3.4:94618733-94618752 | MS.gene031178:intron | 20.0% |
| !! | TACAAAACAACCAATTAAAA+AGG | - | chr3.4:94616298-94616317 | None:intergenic | 20.0% |
| !! | TTCATTAGATTAGATTGTTA+GGG | + | chr3.4:94618115-94618134 | MS.gene031178:intron | 20.0% |
| !! | TTTCATTAGATTAGATTGTT+AGG | + | chr3.4:94618114-94618133 | MS.gene031178:intron | 20.0% |
| !!! | ACATAAAGTGGAAATTTTTA+AGG | - | chr3.4:94619166-94619185 | None:intergenic | 20.0% |
| !!! | ACTAATTTGATTTGATAGAA+AGG | - | chr3.4:94617234-94617253 | None:intergenic | 20.0% |
| !!! | AGAAGAACATTTTTCTTAAA+GGG | - | chr3.4:94619226-94619245 | None:intergenic | 20.0% |
| !!! | ATGGTTAATTTTGTAAATGA+AGG | + | chr3.4:94616942-94616961 | MS.gene031178:intron | 20.0% |
| !!! | ATTTCCATTTCCAATTTTTT+AGG | + | chr3.4:94616364-94616383 | MS.gene031178:intron | 20.0% |
| !!! | ATTTCTACTTCCTTTTTAAT+TGG | + | chr3.4:94616285-94616304 | MS.gene031178:intron | 20.0% |
| !!! | CTAATTTGATTTGATAGAAA+GGG | - | chr3.4:94617233-94617252 | None:intergenic | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr3.4:94618769-94618788 | MS.gene031178:intron | 20.0% |
| !!! | GAGAAGAAAAAATTGTTTTA+TGG | + | chr3.4:94616141-94616160 | MS.gene031178:intron | 20.0% |
| !!! | GTCAACTTTTTCTTATAATA+AGG | - | chr3.4:94618563-94618582 | None:intergenic | 20.0% |
| !!! | TAAGAAAAAGTTGACTTTTT+AGG | + | chr3.4:94618568-94618587 | MS.gene031178:intron | 20.0% |
| !!! | TCCATTTCTTTATTTTTTCT+TGG | + | chr3.4:94617749-94617768 | MS.gene031178:intron | 20.0% |
| !!! | TGAAGAGTTTTAATAGTAAA+GGG | + | chr3.4:94615811-94615830 | MS.gene031178:CDS | 20.0% |
| !!! | TGGAAGTTTTTATTTTTTGA+AGG | + | chr3.4:94616161-94616180 | MS.gene031178:intron | 20.0% |
| !!! | TGTCTTTTTCTTATAAAGTA+GGG | + | chr3.4:94618994-94619013 | MS.gene031178:intron | 20.0% |
| !!! | TTATAACTGTCTTTTGAAAA+TGG | + | chr3.4:94616106-94616125 | MS.gene031178:intron | 20.0% |
| !!! | TTCATTGTTTTCATGAATAA+AGG | - | chr3.4:94615414-94615433 | None:intergenic | 20.0% |
| !!! | TTGAAGAGTTTTAATAGTAA+AGG | + | chr3.4:94615810-94615829 | MS.gene031178:CDS | 20.0% |
| !!! | TTGTCTTTTTCTTATAAAGT+AGG | + | chr3.4:94618993-94619012 | MS.gene031178:intron | 20.0% |
| !!! | TTTTTTGTTCAATTTGATGA+AGG | + | chr3.4:94616218-94616237 | MS.gene031178:intron | 20.0% |
| ! | AAAAGGAAGTAGAAATCAAA+AGG | - | chr3.4:94616281-94616300 | None:intergenic | 25.0% |
| ! | AATCATTAACATGTGTCTTA+AGG | - | chr3.4:94618406-94618425 | None:intergenic | 25.0% |
| ! | AATGTATAAATAAAGGGGAA+AGG | + | chr3.4:94618493-94618512 | MS.gene031178:intron | 25.0% |
| ! | ATGTATAAATAAAGGGGAAA+GGG | + | chr3.4:94618494-94618513 | MS.gene031178:intron | 25.0% |
| ! | ATGTGATTTCAATCAAATCA+TGG | + | chr3.4:94617789-94617808 | MS.gene031178:intron | 25.0% |
| ! | CATACAAGTTTGTATAAAAG+TGG | + | chr3.4:94615945-94615964 | MS.gene031178:CDS | 25.0% |
| ! | GAAACCTAAAAAATTGGAAA+TGG | - | chr3.4:94616371-94616390 | None:intergenic | 25.0% |
| ! | GAAAGGGAATATATTGTATT+GGG | + | chr3.4:94618510-94618529 | MS.gene031178:intron | 25.0% |
| ! | GCCAAGAAAAAATAAAGAAA+TGG | - | chr3.4:94617753-94617772 | None:intergenic | 25.0% |
| ! | TATATAATATATGCAGGAAG+AGG | + | chr3.4:94619636-94619655 | MS.gene031178:intron | 25.0% |
| ! | TTGATAGAAAGGGAAATATA+GGG | - | chr3.4:94617223-94617242 | None:intergenic | 25.0% |
| ! | TTTGATAGAAAGGGAAATAT+AGG | - | chr3.4:94617224-94617243 | None:intergenic | 25.0% |
| !! | AAATGTTGGAGTATTTATTG+AGG | - | chr3.4:94618942-94618961 | None:intergenic | 25.0% |
| !! | AATGTTGGAGTATTTATTGA+GGG | - | chr3.4:94618941-94618960 | None:intergenic | 25.0% |
| !! | ATAAGAGAAATGTTAACTTG+TGG | - | chr3.4:94618060-94618079 | None:intergenic | 25.0% |
| !! | ATCATTTTATTGCACTTTCT+TGG | + | chr3.4:94616650-94616669 | MS.gene031178:intron | 25.0% |
| !! | CAACAGAATATTTCTATCTT+TGG | + | chr3.4:94618012-94618031 | MS.gene031178:intron | 25.0% |
| !! | CTTTTTCTTATAATAAGGAC+CGG | - | chr3.4:94618558-94618577 | None:intergenic | 25.0% |
| !! | GAGAAGAACATTTTTCTTAA+AGG | - | chr3.4:94619227-94619246 | None:intergenic | 25.0% |
| !! | GTCTTTTTCTTATAAAGTAG+GGG | + | chr3.4:94618995-94619014 | MS.gene031178:intron | 25.0% |
| !! | TTGTTTCTTATAATAAGGAC+CGG | + | chr3.4:94618667-94618686 | MS.gene031178:intron | 25.0% |
| !!! | AAGCGACACTAATTTTAAAA+CGG | - | chr3.4:94618841-94618860 | None:intergenic | 25.0% |
| !!! | AGGGAATTAATAGTTTTGAA+AGG | + | chr3.4:94619442-94619461 | MS.gene031178:intron | 25.0% |
| !!! | ATGTTGATTCATGTACTAAA+TGG | + | chr3.4:94616701-94616720 | MS.gene031178:intron | 25.0% |
| !!! | GAAGAGTTTTAATAGTAAAG+GGG | + | chr3.4:94615812-94615831 | MS.gene031178:CDS | 25.0% |
| !!! | GCAATTTCCCTATTTTAATT+TGG | + | chr3.4:94619472-94619491 | MS.gene031178:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr3.4:94618768-94618787 | MS.gene031178:intron | 25.0% |
| !!! | GGGAATTAATAGTTTTGAAA+GGG | + | chr3.4:94619443-94619462 | MS.gene031178:intron | 25.0% |
| !!! | TTATGAACTGTTGTTTTGAA+GGG | - | chr3.4:94615692-94615711 | None:intergenic | 25.0% |
| !!! | TTGTTGTTTTAGAGTATGTT+CGG | - | chr3.4:94617463-94617482 | None:intergenic | 25.0% |
| !!! | TTTATGAACTGTTGTTTTGA+AGG | - | chr3.4:94615693-94615712 | None:intergenic | 25.0% |
| AAAACACCCAGAAAAATCAT+GGG | - | chr3.4:94616777-94616796 | None:intergenic | 30.0% | |
| AAATGTTAACTTATGCCCTT+AGG | - | chr3.4:94619203-94619222 | None:intergenic | 30.0% | |
| AAATTGTGTGAGAGAAATGT+TGG | - | chr3.4:94618956-94618975 | None:intergenic | 30.0% | |
| AATGTTAACTTATGCCCTTA+GGG | - | chr3.4:94619202-94619221 | None:intergenic | 30.0% | |
| AATTAAAGGTGGACACATTA+AGG | + | chr3.4:94617191-94617210 | MS.gene031178:CDS | 30.0% | |
| ACTAGAAAGATCTAATTGTG+TGG | + | chr3.4:94615563-94615582 | MS.gene031178:CDS | 30.0% | |
| AGTTAACTCATGTTGAGTTA+AGG | + | chr3.4:94619422-94619441 | MS.gene031178:intron | 30.0% | |
| ATCAGATGTAATGTGAGATT+TGG | + | chr3.4:94617511-94617530 | MS.gene031178:intron | 30.0% | |
| ATGCTAGGAAAATCAACTTT+CGG | + | chr3.4:94616985-94617004 | MS.gene031178:CDS | 30.0% | |
| ATTCTGTGAATTACCCTTTA+TGG | + | chr3.4:94615641-94615660 | MS.gene031178:CDS | 30.0% | |
| CAACAAATCATCATCAACAA+CGG | + | chr3.4:94615437-94615456 | MS.gene031178:CDS | 30.0% | |
| GCAAAGCAAGAATTAAACAA+GGG | - | chr3.4:94616537-94616556 | None:intergenic | 30.0% | |
| GGAAAGGGAATATATTGTAT+TGG | + | chr3.4:94618509-94618528 | MS.gene031178:intron | 30.0% | |
| GTATTTATTGAGGGTAAAGT+TGG | - | chr3.4:94618932-94618951 | None:intergenic | 30.0% | |
| GTTAACTCATGTTGAGTTAA+GGG | + | chr3.4:94619423-94619442 | MS.gene031178:intron | 30.0% | |
| TATTGCTTAAGAGAGTTAGA+AGG | + | chr3.4:94615372-94615391 | MS.gene031178:CDS | 30.0% | |
| TCAGATGTAATGTGAGATTT+GGG | + | chr3.4:94617512-94617531 | MS.gene031178:intron | 30.0% | |
| TCATCTACACCTTCAATATT+AGG | - | chr3.4:94615906-94615925 | None:intergenic | 30.0% | |
| TGCAAAGCAAGAATTAAACA+AGG | - | chr3.4:94616538-94616557 | None:intergenic | 30.0% | |
| TTATTTGAATCATGCTTGGT+GGG | + | chr3.4:94618076-94618095 | MS.gene031178:intron | 30.0% | |
| TTGACACACAGATTAAGAAA+TGG | - | chr3.4:94619060-94619079 | None:intergenic | 30.0% | |
| TTGTGTCAATTAAATTGGGA+CGG | - | chr3.4:94618447-94618466 | None:intergenic | 30.0% | |
| ! | ACAACAGTTCATAAAGTACT+TGG | + | chr3.4:94615698-94615717 | MS.gene031178:CDS | 30.0% |
| ! | ATTGAAGGTGTAGATGAATT+TGG | + | chr3.4:94615909-94615928 | MS.gene031178:CDS | 30.0% |
| ! | GATCTTTCTAGTATTACACA+TGG | - | chr3.4:94615555-94615574 | None:intergenic | 30.0% |
| ! | GCTGAATTTGATGGTAAAAT+TGG | + | chr3.4:94615777-94615796 | MS.gene031178:CDS | 30.0% |
| ! | GGTAATTCACAGAATTGTTT+TGG | - | chr3.4:94615636-94615655 | None:intergenic | 30.0% |
| ! | TAACTTTCCTCGACATTTTT+CGG | + | chr3.4:94619284-94619303 | MS.gene031178:intron | 30.0% |
| ! | TCTCTTATTTGAATCATGCT+TGG | + | chr3.4:94618072-94618091 | MS.gene031178:intron | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | + | chr3.4:94618746-94618765 | MS.gene031178:intron | 30.0% |
| ! | TTGATGGTAAAATTGGTTGT+TGG | + | chr3.4:94615784-94615803 | MS.gene031178:CDS | 30.0% |
| !! | AATGTGTCCACCTTTAATTT+TGG | - | chr3.4:94617190-94617209 | None:intergenic | 30.0% |
| !! | GAATTTTGATGGCATCATAT+TGG | + | chr3.4:94618273-94618292 | MS.gene031178:CDS | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | + | chr3.4:94618747-94618766 | MS.gene031178:intron | 30.0% |
| !!! | GAGATATTTTAACTGAGATC+TGG | + | chr3.4:94617312-94617331 | MS.gene031178:intron | 30.0% |
| AAAAACTCCTGTCTTAGATG+TGG | + | chr3.4:94617155-94617174 | MS.gene031178:CDS | 35.0% | |
| AAAACTCCTGTCTTAGATGT+GGG | + | chr3.4:94617156-94617175 | MS.gene031178:CDS | 35.0% | |
| AAAAGTGGTGAAGAGTTTAG+AGG | + | chr3.4:94615960-94615979 | MS.gene031178:CDS | 35.0% | |
| AAAGTGGTGAAGAGTTTAGA+GGG | + | chr3.4:94615961-94615980 | MS.gene031178:CDS | 35.0% | |
| AAGGTGTAGATGAATTTGGA+GGG | + | chr3.4:94615913-94615932 | MS.gene031178:CDS | 35.0% | |
| AATGTCATCAGCTATTCTCT+TGG | - | chr3.4:94619782-94619801 | None:intergenic | 35.0% | |
| ACAAAAGCAATGTTCCCTAT+TGG | + | chr3.4:94618305-94618324 | MS.gene031178:CDS | 35.0% | |
| ACACTAAATAATACTCCCTC+CGG | - | chr3.4:94618689-94618708 | None:intergenic | 35.0% | |
| ACATGTTAGGGAACATAAAG+TGG | - | chr3.4:94619178-94619197 | None:intergenic | 35.0% | |
| ATAGTTTCATGGCTTATGCT+TGG | + | chr3.4:94617066-94617085 | MS.gene031178:CDS | 35.0% | |
| ATATCATACCTTGAGCCAAT+AGG | - | chr3.4:94618323-94618342 | None:intergenic | 35.0% | |
| ATGAATTTGGAGGGGTTATA+AGG | + | chr3.4:94615922-94615941 | MS.gene031178:CDS | 35.0% | |
| ATTTCGGAACTTGAAACCTA+TGG | - | chr3.4:94616566-94616585 | None:intergenic | 35.0% | |
| CTAATTGTGTGGCTTCATTA+TGG | + | chr3.4:94615574-94615593 | MS.gene031178:CDS | 35.0% | |
| CTTATTTGAATCATGCTTGG+TGG | + | chr3.4:94618075-94618094 | MS.gene031178:intron | 35.0% | |
| GAAAACACCCAGAAAAATCA+TGG | - | chr3.4:94616778-94616797 | None:intergenic | 35.0% | |
| GATAAAAATAGTACTCCCTC+CGG | + | chr3.4:94618536-94618555 | MS.gene031178:intron | 35.0% | |
| GCACTTGATGTAAAGCATAA+AGG | - | chr3.4:94617663-94617682 | None:intergenic | 35.0% | |
| GTCAAACCAAAAAAAGCAGT+GGG | - | chr3.4:94616864-94616883 | None:intergenic | 35.0% | |
| GTCAAGCCTAAGAATGATTA+TGG | + | chr3.4:94617353-94617372 | MS.gene031178:intron | 35.0% | |
| GTGCAAAATGCTGAATTTGA+TGG | + | chr3.4:94615768-94615787 | MS.gene031178:CDS | 35.0% | |
| GTGTTGCCATAATCATTCTT+AGG | - | chr3.4:94617362-94617381 | None:intergenic | 35.0% | |
| TAACTCTTGTTCGACATTCT+TGG | - | chr3.4:94619407-94619426 | None:intergenic | 35.0% | |
| TAGTAAAGGGGATGTAACTA+CGG | + | chr3.4:94615824-94615843 | MS.gene031178:CDS | 35.0% | |
| TATCATACCTTGAGCCAATA+GGG | - | chr3.4:94618322-94618341 | None:intergenic | 35.0% | |
| TCAAACCAAAAAAAGCAGTG+GGG | - | chr3.4:94616863-94616882 | None:intergenic | 35.0% | |
| TGCTAGGAAAATCAACTTTC+GGG | + | chr3.4:94616986-94617005 | MS.gene031178:CDS | 35.0% | |
| TGTCAAACCAAAAAAAGCAG+TGG | - | chr3.4:94616865-94616884 | None:intergenic | 35.0% | |
| TTACTCAAGTGGTTTCCATT+GGG | + | chr3.4:94617021-94617040 | MS.gene031178:CDS | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | + | chr3.4:94618671-94618690 | MS.gene031178:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | - | chr3.4:94618690-94618671 | None:intergenic | 35.0% | |
| TTTCGGAACTTGAAACCTAT+GGG | - | chr3.4:94616565-94616584 | None:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | + | chr3.4:94618670-94618689 | MS.gene031178:intron | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | - | chr3.4:94618689-94618670 | None:intergenic | 35.0% | |
| ! | AGGTAAAAATGGACTCTATG+CGG | + | chr3.4:94619714-94619733 | MS.gene031178:CDS | 35.0% |
| ! | ATGCGGTAGGTTTTACAAAA+AGG | + | chr3.4:94619731-94619750 | MS.gene031178:CDS | 35.0% |
| ! | CCTAAAAATCGATTGGTCAT+TGG | + | chr3.4:94618181-94618200 | MS.gene031178:intron | 35.0% |
| ! | GAAGATTATGCAGAGAGTTT+TGG | + | chr3.4:94615720-94615739 | MS.gene031178:CDS | 35.0% |
| ! | GATATGTTCTCTAAGGAAGA+TGG | + | chr3.4:94619658-94619677 | MS.gene031178:CDS | 35.0% |
| ! | GTAATGTGAGATTTGGGTTA+TGG | + | chr3.4:94617518-94617537 | MS.gene031178:intron | 35.0% |
| ! | GTTTAGAGGGAAGAAAGTTT+TGG | + | chr3.4:94615974-94615993 | MS.gene031178:CDS | 35.0% |
| ! | TGCGGTAGGTTTTACAAAAA+GGG | + | chr3.4:94619732-94619751 | MS.gene031178:CDS | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr3.4:94619086-94619105 | MS.gene031178:intron | 35.0% |
| !! | ATCTAAGACAGGAGTTTTTC+CGG | - | chr3.4:94617154-94617173 | None:intergenic | 35.0% |
| !! | ATGCAGAGAGTTTTGGTATT+AGG | + | chr3.4:94615727-94615746 | MS.gene031178:CDS | 35.0% |
| !! | ATTCTTAACTTGTGCCCTTT+GGG | - | chr3.4:94617913-94617932 | None:intergenic | 35.0% |
| !! | CCAATGACCAATCGATTTTT+AGG | - | chr3.4:94618184-94618203 | None:intergenic | 35.0% |
| !! | CGTTTTAACCGTTTTATGCT+TGG | - | chr3.4:94618220-94618239 | None:intergenic | 35.0% |
| !! | TCCACCTTTAATTTTGGCAA+GGG | - | chr3.4:94617184-94617203 | None:intergenic | 35.0% |
| !! | TTCAAAATGAGTGTCGCTTT+AGG | - | chr3.4:94619085-94619104 | None:intergenic | 35.0% |
| !! | TTCTCTTGTTGTTCGAGATT+CGG | + | chr3.4:94616061-94616080 | MS.gene031178:CDS | 35.0% |
| !!! | AAAGTTTTGGTTGTTGGTTG+TGG | + | chr3.4:94615987-94616006 | MS.gene031178:CDS | 35.0% |
| !!! | CGACACTAATTTTAAAACGG+AGG | - | chr3.4:94618838-94618857 | None:intergenic | 35.0% |
| !!! | GTTGTTTTGAAGGGTATGTT+GGG | - | chr3.4:94615683-94615702 | None:intergenic | 35.0% |
| !!! | TAACATTTTTTAAGTGCGCG+TGG | - | chr3.4:94619526-94619545 | None:intergenic | 35.0% |
| !!! | TACGCTGCAACTTTTAAGAT+CGG | + | chr3.4:94619319-94619338 | MS.gene031178:intron | 35.0% |
| !!! | TGTTGTTTTGAAGGGTATGT+TGG | - | chr3.4:94615684-94615703 | None:intergenic | 35.0% |
| AAAAAAAGCAGTGGGGGAAA+AGG | - | chr3.4:94616856-94616875 | None:intergenic | 40.0% | |
| AAACCACTTGAGTAACCACA+TGG | - | chr3.4:94617016-94617035 | None:intergenic | 40.0% | |
| ACCCTTGCCAAAATTAAAGG+TGG | + | chr3.4:94617180-94617199 | MS.gene031178:CDS | 40.0% | |
| AGGTACGACCAAGCATAAAA+CGG | + | chr3.4:94618209-94618228 | MS.gene031178:intron | 40.0% | |
| AGGTGTAGATGAATTTGGAG+GGG | + | chr3.4:94615914-94615933 | MS.gene031178:CDS | 40.0% | |
| AGTGGGTGGAAAGGTAAAAA+TGG | + | chr3.4:94619703-94619722 | MS.gene031178:CDS | 40.0% | |
| ATCTGAGGGGAATTCCATAA+AGG | - | chr3.4:94615658-94615677 | None:intergenic | 40.0% | |
| ATGAAGACGTAATCGATCGT+AGG | - | chr3.4:94615610-94615629 | None:intergenic | 40.0% | |
| CAAACCAAAAAAAGCAGTGG+GGG | - | chr3.4:94616862-94616881 | None:intergenic | 40.0% | |
| CTACGGAATATGTTTGTCGT+TGG | + | chr3.4:94615841-94615860 | MS.gene031178:CDS | 40.0% | |
| CTATGAAGCCATTTCCAAGT+GGG | + | chr3.4:94619686-94619705 | MS.gene031178:CDS | 40.0% | |
| GAAAATGGGTCAGTTATTCC+CGG | + | chr3.4:94618783-94618802 | MS.gene031178:intron | 40.0% | |
| GAATCTCGAACAACAAGAGA+AGG | - | chr3.4:94616062-94616081 | None:intergenic | 40.0% | |
| GCTGTTGTGCCTAATATTGA+AGG | + | chr3.4:94615894-94615913 | MS.gene031178:CDS | 40.0% | |
| GGAAGAGGATATGTTCTCTA+AGG | + | chr3.4:94619651-94619670 | MS.gene031178:intron | 40.0% | |
| GGTACCCTTGCCAAAATTAA+AGG | + | chr3.4:94617177-94617196 | MS.gene031178:CDS | 40.0% | |
| GGTTCTTGCTCATAGTTTCA+TGG | + | chr3.4:94617055-94617074 | MS.gene031178:CDS | 40.0% | |
| GTTACTCAAGTGGTTTCCAT+TGG | + | chr3.4:94617020-94617039 | MS.gene031178:CDS | 40.0% | |
| TAGCGCTAGTATTAGTTGGT+TGG | + | chr3.4:94617541-94617560 | MS.gene031178:intron | 40.0% | |
| TATTCTCTTGGCATCCATAG+AGG | - | chr3.4:94619770-94619789 | None:intergenic | 40.0% | |
| TATTGGGAGATAGTGCTTGA+TGG | - | chr3.4:94616433-94616452 | None:intergenic | 40.0% | |
| TCTGAGGGGAATTCCATAAA+GGG | - | chr3.4:94615657-94615676 | None:intergenic | 40.0% | |
| TCTTATAGAGCTAGCTAGCA+TGG | - | chr3.4:94617294-94617313 | None:intergenic | 40.0% | |
| TGGTTGTGGTAATTCTGGTA+TGG | + | chr3.4:94616001-94616020 | MS.gene031178:CDS | 40.0% | |
| TGTCAATTAAATTGGGACGG+AGG | - | chr3.4:94618444-94618463 | None:intergenic | 40.0% | |
| TTAGAAGCTGAAGCAAAGCA+TGG | + | chr3.4:94619811-94619830 | MS.gene031178:CDS | 40.0% | |
| TTTACAAAAAGGGGACTGCA+AGG | + | chr3.4:94619742-94619761 | MS.gene031178:CDS | 40.0% | |
| ! | AAAAATGGACTCTATGCGGT+AGG | + | chr3.4:94619718-94619737 | MS.gene031178:CDS | 40.0% |
| ! | ACCACACCCATGATTTTTCT+GGG | + | chr3.4:94616768-94616787 | MS.gene031178:intron | 40.0% |
| ! | ATCATGGACGAAAGCACAAT+TGG | + | chr3.4:94617805-94617824 | MS.gene031178:intron | 40.0% |
| ! | ATGGTAGCGCTAGTATTAGT+TGG | + | chr3.4:94617537-94617556 | MS.gene031178:intron | 40.0% |
| ! | GAAGGTGTAGATGAATTTGG+AGG | + | chr3.4:94615912-94615931 | MS.gene031178:CDS | 40.0% |
| ! | GCGGTAGGTTTTACAAAAAG+GGG | + | chr3.4:94619733-94619752 | MS.gene031178:CDS | 40.0% |
| ! | GGAAGGTCAGAGAATTTTGA+TGG | + | chr3.4:94618262-94618281 | MS.gene031178:CDS | 40.0% |
| ! | GTTGTTGGTTGTGGTAATTC+TGG | + | chr3.4:94615996-94616015 | MS.gene031178:CDS | 40.0% |
| ! | TTTTTACCTTTCCACCCACT+TGG | - | chr3.4:94619703-94619722 | None:intergenic | 40.0% |
| !! | AATGTTAACTTGTGGCCTCA+AGG | - | chr3.4:94618052-94618071 | None:intergenic | 40.0% |
| !! | AGAGTTTTGGTATTAGGCCA+CGG | + | chr3.4:94615733-94615752 | MS.gene031178:CDS | 40.0% |
| !! | AGTGTTAACTTGTGCCCAAA+GGG | + | chr3.4:94617896-94617915 | MS.gene031178:intron | 40.0% |
| !! | GATTCTTAACTTGTGCCCTT+TGG | - | chr3.4:94617914-94617933 | None:intergenic | 40.0% |
| !! | GGGAACATTGCTTTTGTAAC+CGG | - | chr3.4:94618302-94618321 | None:intergenic | 40.0% |
| !! | GTCCACCTTTAATTTTGGCA+AGG | - | chr3.4:94617185-94617204 | None:intergenic | 40.0% |
| !! | GTTTCTTAACTTGTGCCTTG+AGG | + | chr3.4:94618034-94618053 | MS.gene031178:intron | 40.0% |
| !! | TAGTGTTAACTTGTGCCCAA+AGG | + | chr3.4:94617895-94617914 | MS.gene031178:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr3.4:94619090-94619109 | MS.gene031178:intron | 40.0% |
| !!! | GGGAAGAAAGTTTTGGTTGT+TGG | + | chr3.4:94615981-94616000 | MS.gene031178:CDS | 40.0% |
| !!! | TTTTCCCCCACTGCTTTTTT+TGG | + | chr3.4:94616855-94616874 | MS.gene031178:intron | 40.0% |
| AACAGCTTCTGCATTCTCAC+CGG | - | chr3.4:94615880-94615899 | None:intergenic | 45.0% | |
| ACCCAGAAAAATCATGGGTG+TGG | - | chr3.4:94616772-94616791 | None:intergenic | 45.0% | |
| ACGGTTAAAACGTCACACAG+TGG | + | chr3.4:94618228-94618247 | MS.gene031178:CDS | 45.0% | |
| ACTCATGCCGAAAAATGTCG+AGG | - | chr3.4:94619294-94619313 | None:intergenic | 45.0% | |
| AGGGTATGTTGGGAAATCTG+AGG | - | chr3.4:94615673-94615692 | None:intergenic | 45.0% | |
| ATTCTCAAGCATGCGCAACA+TGG | + | chr3.4:94616673-94616692 | MS.gene031178:intron | 45.0% | |
| CAAGAGAAGGAGTAGCATCA+TGG | - | chr3.4:94616049-94616068 | None:intergenic | 45.0% | |
| CACACAGTGGAATTCGTAGA+TGG | + | chr3.4:94618241-94618260 | MS.gene031178:CDS | 45.0% | |
| CAGAAAAATCATGGGTGTGG+TGG | - | chr3.4:94616769-94616788 | None:intergenic | 45.0% | |
| CAGTGGAATTCGTAGATGGA+AGG | + | chr3.4:94618245-94618264 | MS.gene031178:CDS | 45.0% | |
| CCACTTGGAAATGGCTTCAT+AGG | - | chr3.4:94619688-94619707 | None:intergenic | 45.0% | |
| CCTATGAAGCCATTTCCAAG+TGG | + | chr3.4:94619685-94619704 | MS.gene031178:CDS | 45.0% | |
| CTGAGATCTGGTCATGCAAA+TGG | + | chr3.4:94617324-94617343 | MS.gene031178:intron | 45.0% | |
| CTTCAACTCAAGAACCTCTC+CGG | + | chr3.4:94617132-94617151 | MS.gene031178:CDS | 45.0% | |
| GATGGCATCATATTGGCAAC+CGG | + | chr3.4:94618280-94618299 | MS.gene031178:CDS | 45.0% | |
| GGGTATGTTGGGAAATCTGA+GGG | - | chr3.4:94615672-94615691 | None:intergenic | 45.0% | |
| GGTATGTTGGGAAATCTGAG+GGG | - | chr3.4:94615671-94615690 | None:intergenic | 45.0% | |
| TATTTACTACTCCCTCCGTC+CGG | - | chr3.4:94618805-94618824 | None:intergenic | 45.0% | |
| TGCACTGTCTCATTAAACCG+TGG | - | chr3.4:94615753-94615772 | None:intergenic | 45.0% | |
| TGTCCATGTGGTTACTCAAG+TGG | + | chr3.4:94617010-94617029 | MS.gene031178:CDS | 45.0% | |
| TTCCATTGGGACTTGTCGAT+CGG | + | chr3.4:94617034-94617053 | MS.gene031178:CDS | 45.0% | |
| TTCCCTAACATGTGCCCTAA+GGG | + | chr3.4:94619185-94619204 | MS.gene031178:intron | 45.0% | |
| TTCTCAAGCATGCGCAACAT+GGG | + | chr3.4:94616674-94616693 | MS.gene031178:intron | 45.0% | |
| ! | CACCACACCCATGATTTTTC+TGG | + | chr3.4:94616767-94616786 | MS.gene031178:intron | 45.0% |
| ! | GATTTTCCTAGCATCTCTCG+TGG | - | chr3.4:94616979-94616998 | None:intergenic | 45.0% |
| ! | TCGATTGGTCATTGGTGTGT+AGG | + | chr3.4:94618189-94618208 | MS.gene031178:intron | 45.0% |
| ! | TGTTTTCCCCACATAGAGCA+TGG | + | chr3.4:94616791-94616810 | MS.gene031178:intron | 45.0% |
| ! | TTGGTGACACTGCTCAACTT+GGG | + | chr3.4:94617085-94617104 | MS.gene031178:CDS | 45.0% |
| !! | CAATGTTCCCTATTGGCTCA+AGG | + | chr3.4:94618312-94618331 | MS.gene031178:CDS | 45.0% |
| !! | GAGAGGTTCTTGAGTTGAAG+GGG | - | chr3.4:94617132-94617151 | None:intergenic | 45.0% |
| !! | GGAGAGGTTCTTGAGTTGAA+GGG | - | chr3.4:94617133-94617152 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr3.4:94619089-94619108 | MS.gene031178:intron | 45.0% |
| AACCGATCGACAAGTCCCAA+TGG | - | chr3.4:94617039-94617058 | None:intergenic | 50.0% | |
| ATGCCCTTAGGGCACATGTT+AGG | - | chr3.4:94619191-94619210 | None:intergenic | 50.0% | |
| ATGGGTCAGTTATTCCCGGA+CGG | + | chr3.4:94618787-94618806 | MS.gene031178:intron | 50.0% | |
| ATTTACTACTCCCTCCGTCC+GGG | - | chr3.4:94618804-94618823 | None:intergenic | 50.0% | |
| CCATTTCCAAGTGGGTGGAA+AGG | + | chr3.4:94619694-94619713 | MS.gene031178:CDS | 50.0% | |
| CCTTTCCACCCACTTGGAAA+TGG | - | chr3.4:94619697-94619716 | None:intergenic | 50.0% | |
| CTTGCTTTGCATGCACCCAT+AGG | + | chr3.4:94616547-94616566 | MS.gene031178:intron | 50.0% | |
| GCCTAATGTTGTTGCAGGCT+AGG | - | chr3.4:94616817-94616836 | None:intergenic | 50.0% | |
| GCCTAGCCTGCAACAACATT+AGG | + | chr3.4:94616813-94616832 | MS.gene031178:intron | 50.0% | |
| GTTCCCTAACATGTGCCCTA+AGG | + | chr3.4:94619184-94619203 | MS.gene031178:intron | 50.0% | |
| TCGCGTGTTTGTTCAAGGAC+CGG | + | chr3.4:94615467-94615486 | MS.gene031178:CDS | 50.0% | |
| TGAAGCCATTTCCAAGTGGG+TGG | + | chr3.4:94619689-94619708 | MS.gene031178:CDS | 50.0% | |
| TGACACTGCTCAACTTGGGT+TGG | + | chr3.4:94617089-94617108 | MS.gene031178:CDS | 50.0% | |
| TGCCCTTAGGGCACATGTTA+GGG | - | chr3.4:94619190-94619209 | None:intergenic | 50.0% | |
| TGGCTGCCTAATGTTGTTGC+AGG | - | chr3.4:94616822-94616841 | None:intergenic | 50.0% | |
| TTCCTAGCATCTCTCGTGGT+AGG | - | chr3.4:94616975-94616994 | None:intergenic | 50.0% | |
| ! | AGACAGGAGTTTTTCCGGAG+AGG | - | chr3.4:94617149-94617168 | None:intergenic | 50.0% |
| ! | AGGGTACCCACATCTAAGAC+AGG | - | chr3.4:94617165-94617184 | None:intergenic | 50.0% |
| ! | CTTGGTGACACTGCTCAACT+TGG | + | chr3.4:94617084-94617103 | MS.gene031178:CDS | 50.0% |
| ! | GGGAAAAGGTACGAGGACTT+TGG | - | chr3.4:94616842-94616861 | None:intergenic | 50.0% |
| !! | CAACTTTCGGGTTGTCCATG+TGG | + | chr3.4:94616998-94617017 | MS.gene031178:CDS | 50.0% |
| !! | CGGAGAGGTTCTTGAGTTGA+AGG | - | chr3.4:94617134-94617153 | None:intergenic | 50.0% |
| AGGCTAGGCCATGCTCTATG+TGG | - | chr3.4:94616802-94616821 | None:intergenic | 55.0% | |
| AGTTGAAGGGGACCCAAACG+AGG | - | chr3.4:94617120-94617139 | None:intergenic | 55.0% | |
| ATCGTAGGAGCAGGACCTTC+TGG | + | chr3.4:94615492-94615511 | MS.gene031178:CDS | 55.0% | |
| CGTCGTCGCGTGTTTGTTCA+AGG | + | chr3.4:94615462-94615481 | MS.gene031178:CDS | 55.0% | |
| GCAGCTGCTGCTAAACCAGA+AGG | - | chr3.4:94615510-94615529 | None:intergenic | 55.0% | |
| GCTAGGCCATGCTCTATGTG+GGG | - | chr3.4:94616800-94616819 | None:intergenic | 55.0% | |
| GGCTAGGCCATGCTCTATGT+GGG | - | chr3.4:94616801-94616820 | None:intergenic | 55.0% | |
| GGGTTGGATCGTCCTCGTTT+GGG | + | chr3.4:94617105-94617124 | MS.gene031178:CDS | 55.0% | |
| GTCAGTTATTCCCGGACGGA+GGG | + | chr3.4:94618791-94618810 | MS.gene031178:intron | 55.0% | |
| GTCCTACCACGAGAGATGCT+AGG | + | chr3.4:94616970-94616989 | MS.gene031178:CDS | 55.0% | |
| GTTCAAGGACCGGTGATCGT+AGG | + | chr3.4:94615477-94615496 | MS.gene031178:CDS | 55.0% | |
| ! | CGTTGGTTGATCGTTGCGAC+CGG | + | chr3.4:94615858-94615877 | MS.gene031178:CDS | 55.0% |
| ! | TGGGTTGGATCGTCCTCGTT+TGG | + | chr3.4:94617104-94617123 | MS.gene031178:CDS | 55.0% |
| GGTCAGTTATTCCCGGACGG+AGG | + | chr3.4:94618790-94618809 | MS.gene031178:intron | 60.0% | |
| GGTCCTGCTCCTACGATCAC+CGG | - | chr3.4:94615489-94615508 | None:intergenic | 60.0% | |
| ! | GCAGTGGGGGAAAAGGTACG+AGG | - | chr3.4:94616849-94616868 | None:intergenic | 60.0% |
| ! | GGGACTGCAAGGTGCCTCTA+TGG | + | chr3.4:94619753-94619772 | MS.gene031178:CDS | 60.0% |
| GGACCGGTGATCGTAGGAGC+AGG | + | chr3.4:94615483-94615502 | MS.gene031178:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 94615366 | 94619840 | 94615366 | ID=MS.gene031178 |
| chr3.4 | mRNA | 94615366 | 94619840 | 94615366 | ID=MS.gene031178.t1;Parent=MS.gene031178 |
| chr3.4 | exon | 94615366 | 94616082 | 94615366 | ID=MS.gene031178.t1.exon1;Parent=MS.gene031178.t1 |
| chr3.4 | CDS | 94615366 | 94616082 | 94615366 | ID=cds.MS.gene031178.t1;Parent=MS.gene031178.t1 |
| chr3.4 | exon | 94616964 | 94617212 | 94616964 | ID=MS.gene031178.t1.exon2;Parent=MS.gene031178.t1 |
| chr3.4 | CDS | 94616964 | 94617212 | 94616964 | ID=cds.MS.gene031178.t1;Parent=MS.gene031178.t1 |
| chr3.4 | exon | 94618211 | 94618333 | 94618211 | ID=MS.gene031178.t1.exon3;Parent=MS.gene031178.t1 |
| chr3.4 | CDS | 94618211 | 94618333 | 94618211 | ID=cds.MS.gene031178.t1;Parent=MS.gene031178.t1 |
| chr3.4 | exon | 94619652 | 94619840 | 94619652 | ID=MS.gene031178.t1.exon4;Parent=MS.gene031178.t1 |
| chr3.4 | CDS | 94619652 | 94619840 | 94619652 | ID=cds.MS.gene031178.t1;Parent=MS.gene031178.t1 |
| Gene Sequence |
| Protein sequence |
