Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061851.t1 | XP_003625456.1 | 98.8 | 416 | 5 | 0 | 1 | 416 | 1 | 416 | 1.20E-242 | 848.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061851.t1 | Q9SVU0 | 75.1 | 425 | 95 | 4 | 1 | 415 | 1 | 424 | 1.0e-189 | 664.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061851.t1 | G7KZI9 | 98.8 | 416 | 5 | 0 | 1 | 416 | 1 | 416 | 8.9e-243 | 848.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052494 | MS.gene061851 | 0.804454 | 2.14E-49 | -1.69E-46 |
| MS.gene052606 | MS.gene061851 | 0.816415 | 5.59E-52 | -1.69E-46 |
| MS.gene053097 | MS.gene061851 | 0.800615 | 1.33E-48 | -1.69E-46 |
| MS.gene057768 | MS.gene061851 | 0.802758 | 4.82E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene53594 | MS.gene061851 | PPI |
| MS.gene035805 | MS.gene061851 | PPI |
| MS.gene31616 | MS.gene061851 | PPI |
| MS.gene51580 | MS.gene061851 | PPI |
| MS.gene019484 | MS.gene061851 | PPI |
| MS.gene027681 | MS.gene061851 | PPI |
| MS.gene61665 | MS.gene061851 | PPI |
| MS.gene061851 | MS.gene06418 | PPI |
| MS.gene014685 | MS.gene061851 | PPI |
| MS.gene29205 | MS.gene061851 | PPI |
| MS.gene60245 | MS.gene061851 | PPI |
| MS.gene015953 | MS.gene061851 | PPI |
| MS.gene86173 | MS.gene061851 | PPI |
| MS.gene36879 | MS.gene061851 | PPI |
| MS.gene064542 | MS.gene061851 | PPI |
| MS.gene061851 | MS.gene054944 | PPI |
| MS.gene031178 | MS.gene061851 | PPI |
| MS.gene021474 | MS.gene061851 | PPI |
| MS.gene32792 | MS.gene061851 | PPI |
| MS.gene64265 | MS.gene061851 | PPI |
| MS.gene049295 | MS.gene061851 | PPI |
| MS.gene56048 | MS.gene061851 | PPI |
| MS.gene57685 | MS.gene061851 | PPI |
| MS.gene40340 | MS.gene061851 | PPI |
| MS.gene013322 | MS.gene061851 | PPI |
| MS.gene059136 | MS.gene061851 | PPI |
| MS.gene061851 | MS.gene064951 | PPI |
| MS.gene44332 | MS.gene061851 | PPI |
| MS.gene061851 | MS.gene44331 | PPI |
| MS.gene73119 | MS.gene061851 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061851.t1 | MTR_7g099330 | 98.798 | 416 | 5 | 0 | 1 | 416 | 1 | 416 | 0.0 | 852 |
| MS.gene061851.t1 | MTR_1g069275 | 78.436 | 422 | 84 | 4 | 1 | 416 | 1 | 421 | 0.0 | 687 |
| MS.gene061851.t1 | MTR_7g099160 | 97.231 | 325 | 9 | 0 | 92 | 416 | 213 | 537 | 0.0 | 657 |
| MS.gene061851.t1 | MTR_1g046230 | 72.642 | 424 | 107 | 2 | 1 | 416 | 1 | 423 | 0.0 | 637 |
| MS.gene061851.t1 | MTR_1g011630 | 58.268 | 381 | 156 | 2 | 17 | 395 | 9 | 388 | 5.10e-176 | 497 |
| MS.gene061851.t1 | MTR_1g008380 | 58.974 | 390 | 153 | 3 | 17 | 400 | 35 | 423 | 1.23e-173 | 492 |
| MS.gene061851.t1 | MTR_3g109520 | 59.536 | 388 | 149 | 3 | 19 | 399 | 34 | 420 | 9.19e-171 | 484 |
| MS.gene061851.t1 | MTR_6g086870 | 56.391 | 399 | 160 | 5 | 9 | 395 | 4 | 400 | 1.72e-167 | 476 |
| MS.gene061851.t1 | MTR_7g107710 | 45.953 | 383 | 195 | 4 | 25 | 400 | 7 | 384 | 7.49e-120 | 353 |
| MS.gene061851.t1 | MTR_7g107690 | 42.480 | 379 | 206 | 4 | 25 | 396 | 9 | 382 | 3.64e-114 | 339 |
| MS.gene061851.t1 | MTR_5g033260 | 45.093 | 377 | 195 | 4 | 25 | 394 | 7 | 378 | 1.07e-113 | 338 |
| MS.gene061851.t1 | MTR_8g432640 | 45.067 | 375 | 194 | 3 | 25 | 392 | 7 | 376 | 1.92e-112 | 335 |
| MS.gene061851.t1 | MTR_3g088955 | 43.850 | 374 | 196 | 4 | 25 | 390 | 8 | 375 | 2.88e-112 | 335 |
| MS.gene061851.t1 | MTR_3g088925 | 43.432 | 373 | 199 | 3 | 25 | 390 | 8 | 375 | 1.33e-111 | 333 |
| MS.gene061851.t1 | MTR_3g088945 | 43.164 | 373 | 200 | 3 | 25 | 390 | 8 | 375 | 5.72e-111 | 331 |
| MS.gene061851.t1 | MTR_4g051642 | 43.968 | 373 | 196 | 5 | 25 | 390 | 8 | 374 | 9.23e-109 | 326 |
| MS.gene061851.t1 | MTR_3g096030 | 38.068 | 176 | 79 | 2 | 25 | 194 | 7 | 158 | 6.27e-36 | 129 |
| MS.gene061851.t1 | MTR_3g437580 | 23.140 | 242 | 139 | 6 | 26 | 228 | 15 | 248 | 2.06e-11 | 65.5 |
| MS.gene061851.t1 | MTR_3g437580 | 23.140 | 242 | 139 | 6 | 26 | 228 | 15 | 248 | 3.28e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061851.t1 | AT4G28720 | 75.059 | 425 | 95 | 4 | 1 | 415 | 1 | 424 | 0.0 | 672 |
| MS.gene061851.t1 | AT5G43890 | 72.813 | 423 | 105 | 4 | 1 | 414 | 1 | 422 | 0.0 | 644 |
| MS.gene061851.t1 | AT1G04180 | 72.381 | 420 | 109 | 4 | 1 | 414 | 1 | 419 | 0.0 | 637 |
| MS.gene061851.t1 | AT1G04610 | 68.019 | 419 | 124 | 2 | 7 | 416 | 20 | 437 | 0.0 | 603 |
| MS.gene061851.t1 | AT2G33230 | 66.667 | 423 | 130 | 3 | 3 | 416 | 11 | 431 | 0.0 | 569 |
| MS.gene061851.t1 | AT5G25620 | 60.199 | 402 | 151 | 5 | 9 | 402 | 16 | 416 | 5.40e-178 | 503 |
| MS.gene061851.t1 | AT5G25620 | 60.150 | 399 | 150 | 5 | 9 | 399 | 16 | 413 | 6.02e-177 | 501 |
| MS.gene061851.t1 | AT5G11320 | 58.438 | 397 | 159 | 2 | 19 | 415 | 12 | 402 | 4.79e-173 | 490 |
| MS.gene061851.t1 | AT4G32540 | 56.589 | 387 | 165 | 3 | 15 | 399 | 12 | 397 | 1.32e-167 | 476 |
| MS.gene061851.t1 | AT4G32540 | 56.041 | 389 | 166 | 4 | 15 | 399 | 12 | 399 | 7.44e-166 | 472 |
| MS.gene061851.t1 | AT4G13260 | 57.218 | 381 | 155 | 3 | 17 | 390 | 21 | 400 | 3.43e-162 | 462 |
| MS.gene061851.t1 | AT5G11320 | 59.752 | 323 | 129 | 1 | 19 | 341 | 12 | 333 | 1.62e-144 | 416 |
| MS.gene061851.t1 | AT4G13260 | 56.897 | 290 | 119 | 1 | 17 | 300 | 21 | 310 | 4.34e-125 | 364 |
| MS.gene061851.t1 | AT1G48910 | 45.308 | 373 | 192 | 4 | 25 | 390 | 6 | 373 | 3.92e-119 | 352 |
| MS.gene061851.t1 | AT1G21430 | 47.467 | 375 | 180 | 7 | 25 | 390 | 10 | 376 | 4.73e-117 | 347 |
| MS.gene061851.t1 | AT4G13260 | 56.207 | 290 | 119 | 3 | 108 | 390 | 9 | 297 | 4.00e-110 | 326 |
| MS.gene061851.t1 | AT1G65860 | 26.201 | 229 | 129 | 7 | 26 | 222 | 15 | 235 | 5.85e-15 | 77.0 |
| MS.gene061851.t1 | AT5G07800 | 25.346 | 217 | 122 | 5 | 26 | 202 | 18 | 234 | 8.77e-13 | 70.1 |
| MS.gene061851.t1 | AT5G45180 | 25.501 | 349 | 197 | 12 | 25 | 332 | 14 | 340 | 5.87e-12 | 67.8 |
Find 94 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAAAGTCCTTCAATTTC+AGG | 0.167964 | 7.4:+11114012 | None:intergenic |
| TTCTCTCACGCCGTTGCATT+TGG | 0.196198 | 7.4:-11114443 | MS.gene061851:CDS |
| GTTAAAATTGCACAAGATAT+TGG | 0.210104 | 7.4:-11112955 | MS.gene061851:CDS |
| TGTTTCTTTGAAGGGTATTC+AGG | 0.234534 | 7.4:+11114216 | None:intergenic |
| CCATGTGGAAATGGCATCTT+TGG | 0.241543 | 7.4:+11113051 | None:intergenic |
| TTCACAAAGAGAGGGCTTTC+TGG | 0.253444 | 7.4:-11112994 | MS.gene061851:CDS |
| CAATGTCCCTTCTTGGCTTC+AGG | 0.262510 | 7.4:-11113368 | MS.gene061851:intron |
| CACAAGATATTGGAAAAGTT+TGG | 0.264533 | 7.4:-11112945 | MS.gene061851:CDS |
| GTTGTTGGATGTGGAAATTC+TGG | 0.276886 | 7.4:-11113919 | MS.gene061851:CDS |
| ACCGCAGCAATGTCCCTTCT+TGG | 0.278978 | 7.4:-11113375 | MS.gene061851:CDS |
| GTGCTACCTAGAGAAATATT+TGG | 0.304479 | 7.4:-11113715 | MS.gene061851:CDS |
| GGTAGTTGACAGAATTGTTT+TGG | 0.312145 | 7.4:+11114264 | None:intergenic |
| TCTCTCACGCCGTTGCATTT+GGG | 0.312281 | 7.4:-11114442 | MS.gene061851:CDS |
| AGAAGGAAAGACACCGGTTT+TGG | 0.315038 | 7.4:-11113536 | MS.gene061851:CDS |
| GGTGAAGTTGAGCTTGTTAA+TGG | 0.336155 | 7.4:-11113439 | MS.gene061851:CDS |
| CGCCGTTGCATTTGGGTCAA+TGG | 0.349348 | 7.4:-11114435 | MS.gene061851:CDS |
| CCCTTCCAACCATGTGGAAA+TGG | 0.354454 | 7.4:+11113042 | None:intergenic |
| GAACACACTCGTTGAATTGC+GGG | 0.355699 | 7.4:+11114148 | None:intergenic |
| CATGGTTGGAAGGGAAATTC+AGG | 0.364067 | 7.4:-11113033 | MS.gene061851:CDS |
| TATGCTTGTGATTACAAGTC+AGG | 0.381966 | 7.4:-11113970 | MS.gene061851:CDS |
| GGAAAGAAAGTTCTTGTTGT+TGG | 0.397099 | 7.4:-11113934 | MS.gene061851:CDS |
| GGGTATTCAGGGAAATCTTC+AGG | 0.406351 | 7.4:+11114228 | None:intergenic |
| CTTATGAATTGTTTCTTTGA+AGG | 0.406911 | 7.4:+11114207 | None:intergenic |
| AGGTGGCTTGTTGTTGCTAC+TGG | 0.408473 | 7.4:-11114057 | MS.gene061851:CDS |
| TCTTCAGGCATTGGAAGGTT+AGG | 0.415876 | 7.4:+11114243 | None:intergenic |
| TCATCATGCTTTACCTTCCA+TGG | 0.420618 | 7.4:-11113869 | MS.gene061851:CDS |
| TGGTATCAAAAGGCCTTCAA+TGG | 0.420704 | 7.4:-11113581 | MS.gene061851:CDS |
| AAAGTTCTTGTTGTTGGATG+TGG | 0.420882 | 7.4:-11113928 | MS.gene061851:CDS |
| ATCATAGGTGCAGGTCCATC+TGG | 0.430455 | 7.4:-11114405 | MS.gene061851:CDS |
| AGGGACATTGCTGCGGTAAC+CGG | 0.431024 | 7.4:+11113381 | None:intergenic |
| ATCAAAAGGTTTAATAATCA+TGG | 0.435107 | 7.4:-11113460 | MS.gene061851:CDS |
| TTCCATGGTTGTTCGTAGCT+CGG | 0.440887 | 7.4:-11113854 | MS.gene061851:intron |
| ATGAAGTTGAGTACATTTGT+AGG | 0.449172 | 7.4:-11114077 | MS.gene061851:CDS |
| AACTTCAAAGGACCCATTGA+AGG | 0.449923 | 7.4:+11113568 | None:intergenic |
| TTATGAATTGTTTCTTTGAA+GGG | 0.463097 | 7.4:+11114208 | None:intergenic |
| CTGATTGCATAGCATCACTA+TGG | 0.465618 | 7.4:-11114323 | MS.gene061851:CDS |
| GTTTCTTTGAAGGGTATTCA+GGG | 0.466361 | 7.4:+11114217 | None:intergenic |
| TCAGGGAAATCTTCAGGCAT+TGG | 0.472081 | 7.4:+11114234 | None:intergenic |
| TGTTGAAGTGGTTACCACTT+TGG | 0.479523 | 7.4:-11113663 | MS.gene061851:CDS |
| GATATTCCAAATATTTCTCT+AGG | 0.498261 | 7.4:+11113709 | None:intergenic |
| TCTGTGTTCTTCAACTTCAA+AGG | 0.498901 | 7.4:+11113556 | None:intergenic |
| GAAGGACTTTCTGAATTCAA+AGG | 0.499261 | 7.4:-11114003 | MS.gene061851:CDS |
| GCCATTTCCACATGGTTGGA+AGG | 0.503171 | 7.4:-11113043 | MS.gene061851:CDS |
| AGATGCCATTTCCACATGGT+TGG | 0.512278 | 7.4:-11113047 | MS.gene061851:CDS |
| GATGCAGTTGTTCTTGCTAC+CGG | 0.513400 | 7.4:-11113400 | MS.gene061851:CDS |
| AAAGCACCAATGTCCAAAAC+CGG | 0.515634 | 7.4:+11113523 | None:intergenic |
| GTCAATGGACCTGTGATCAT+AGG | 0.520464 | 7.4:-11114420 | MS.gene061851:CDS |
| CTTAACCCTCCACAATCCAC+TGG | 0.522153 | 7.4:+11114104 | None:intergenic |
| CATGTGGAAATGGCATCTTT+GGG | 0.531409 | 7.4:+11113052 | None:intergenic |
| AATTCAGGACTATATGCTGT+AGG | 0.534469 | 7.4:-11113018 | MS.gene061851:CDS |
| ATGCTTGTGATTACAAGTCA+GGG | 0.545079 | 7.4:-11113969 | MS.gene061851:CDS |
| TGTGTTACTCCTGAAATTGA+AGG | 0.546438 | 7.4:-11114021 | MS.gene061851:CDS |
| GGTATCAAAAGGCCTTCAAT+GGG | 0.549973 | 7.4:-11113580 | MS.gene061851:CDS |
| AGGTACAACATTTATGTCAC+CGG | 0.553155 | 7.4:+11113486 | None:intergenic |
| CCATTTCCACATGGTTGGAA+GGG | 0.558378 | 7.4:-11113042 | MS.gene061851:CDS |
| ATATTCACCTGAAGCCAAGA+AGG | 0.558667 | 7.4:+11113361 | None:intergenic |
| TGAACACACTCGTTGAATTG+CGG | 0.561991 | 7.4:+11114147 | None:intergenic |
| GGAAATCTTCAGGCATTGGA+AGG | 0.566772 | 7.4:+11114238 | None:intergenic |
| ATGTTGTACCTGGAATCAAA+AGG | 0.567602 | 7.4:-11113474 | MS.gene061851:CDS |
| GGACCTGTGATCATAGGTGC+AGG | 0.569251 | 7.4:-11114414 | MS.gene061851:CDS |
| TAGCGGTTATGATGTTGAAG+TGG | 0.573120 | 7.4:-11113675 | MS.gene061851:CDS |
| GCTTTGGAGAAAATTAGATC+CGG | 0.578995 | 7.4:-11113505 | MS.gene061851:CDS |
| GCTGTAGGGTTCACAAAGAG+AGG | 0.580060 | 7.4:-11113003 | MS.gene061851:CDS |
| GCTGCCGTTGCAAGACCAGA+TGG | 0.585259 | 7.4:+11114390 | None:intergenic |
| GTGAAGTTTCAATCTGTCGT+AGG | 0.589564 | 7.4:+11114290 | None:intergenic |
| ATTCAGGACTATATGCTGTA+GGG | 0.590290 | 7.4:-11113017 | MS.gene061851:CDS |
| TTGAAGTTGAAGAACACAGA+AGG | 0.590910 | 7.4:-11113553 | MS.gene061851:CDS |
| CCAAAGATGCCATTTCCACA+TGG | 0.597297 | 7.4:-11113051 | MS.gene061851:CDS |
| GCAGCATGTCTTAGAGAACA+AGG | 0.601445 | 7.4:-11114372 | MS.gene061851:CDS |
| TGGATGTGGAAATTCTGGAA+TGG | 0.605555 | 7.4:-11113914 | MS.gene061851:CDS |
| AAGTTGAGTACATTTGTAGG+TGG | 0.605781 | 7.4:-11114074 | MS.gene061851:CDS |
| GGTGACATAAATGTTGTACC+TGG | 0.608839 | 7.4:-11113484 | MS.gene061851:CDS |
| TATTCACCTGAAGCCAAGAA+GGG | 0.613263 | 7.4:+11113362 | None:intergenic |
| CTGTAGGGTTCACAAAGAGA+GGG | 0.613353 | 7.4:-11113002 | MS.gene061851:CDS |
| ATGATGAAACCAGTGGATTG+TGG | 0.614186 | 7.4:-11114113 | MS.gene061851:CDS |
| GGACCTGCACCTATGATCAC+AGG | 0.615165 | 7.4:+11114411 | None:intergenic |
| GTCCATTGACCCAAATGCAA+CGG | 0.615198 | 7.4:+11114433 | None:intergenic |
| GTGGTTACCACTTTGGATTG+TGG | 0.615333 | 7.4:-11113656 | MS.gene061851:CDS |
| AGCTCTTTCGAGAACAACGA+AGG | 0.625793 | 7.4:+11114344 | None:intergenic |
| AGGTCCATCTGGTCTTGCAA+CGG | 0.627266 | 7.4:-11114394 | MS.gene061851:CDS |
| GAATTTCCCTTCCAACCATG+TGG | 0.635313 | 7.4:+11113036 | None:intergenic |
| GAGCTACGAACAACCATGGA+AGG | 0.637115 | 7.4:+11113856 | None:intergenic |
| GCAACGTCTATGACAAGCAG+TGG | 0.639607 | 7.4:+11112891 | None:intergenic |
| AGCTTGTCCACAATCCAAAG+TGG | 0.643807 | 7.4:+11113649 | None:intergenic |
| TACCGAGCTACGAACAACCA+TGG | 0.644442 | 7.4:+11113852 | None:intergenic |
| CAGCATGTCTTAGAGAACAA+GGG | 0.645300 | 7.4:-11114371 | MS.gene061851:CDS |
| AGCATGTCTTAGAGAACAAG+GGG | 0.647019 | 7.4:-11114370 | MS.gene061851:CDS |
| GCTAAGTATGATGAAACCAG+TGG | 0.647995 | 7.4:-11114120 | MS.gene061851:CDS |
| AACGGCGTGAGAGAAAGTCT+TGG | 0.654245 | 7.4:+11114451 | None:intergenic |
| GCCAAGAAGGGACATTGCTG+CGG | 0.662896 | 7.4:+11113374 | None:intergenic |
| GCTCTTTCGAGAACAACGAA+GGG | 0.679788 | 7.4:+11114345 | None:intergenic |
| ATGAAACCAGTGGATTGTGG+AGG | 0.691994 | 7.4:-11114110 | MS.gene061851:CDS |
| GAACACAGAAGGAAAGACAC+CGG | 0.709214 | 7.4:-11113542 | MS.gene061851:CDS |
| TGAAACCAGTGGATTGTGGA+GGG | 0.710675 | 7.4:-11114109 | MS.gene061851:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGTAAATTCTTTTAACTT+AGG | - | chr7.4:11113569-11113588 | MS.gene061851:CDS | 15.0% |
| !!! | ATCAAGTAACTAATTAATTT+TGG | - | chr7.4:11114239-11114258 | MS.gene061851:CDS | 15.0% |
| !! | ATCAAAAGGTTTAATAATCA+TGG | - | chr7.4:11113896-11113915 | MS.gene061851:CDS | 20.0% |
| !!! | AATATCAACTTTTGAATTAG+CGG | - | chr7.4:11113664-11113683 | MS.gene061851:CDS | 20.0% |
| !!! | TAATTTTGGTTATGTTATAC+AGG | - | chr7.4:11114253-11114272 | MS.gene061851:CDS | 20.0% |
| !!! | TTATGAATTGTTTCTTTGAA+GGG | + | chr7.4:11113151-11113170 | None:intergenic | 20.0% |
| ! | AGGATGAAAAAAATCTAACT+GGG | - | chr7.4:11113589-11113608 | MS.gene061851:CDS | 25.0% |
| ! | GATATTCCAAATATTTCTCT+AGG | + | chr7.4:11113650-11113669 | None:intergenic | 25.0% |
| ! | GTTAAAATTGCACAAGATAT+TGG | - | chr7.4:11114401-11114420 | MS.gene061851:CDS | 25.0% |
| ! | TAGGATGAAAAAAATCTAAC+TGG | - | chr7.4:11113588-11113607 | MS.gene061851:CDS | 25.0% |
| ! | TGGAAAAATATGGTATCAAA+AGG | - | chr7.4:11113765-11113784 | MS.gene061851:intron | 25.0% |
| !! | CTTATGAATTGTTTCTTTGA+AGG | + | chr7.4:11113152-11113171 | None:intergenic | 25.0% |
| !!! | ATTTGTTAGCATAGTTTTCA+AGG | + | chr7.4:11113178-11113197 | None:intergenic | 25.0% |
| !!! | ATTTTGACATGGTTCATTTT+GGG | - | chr7.4:11113737-11113756 | MS.gene061851:intron | 25.0% |
| !!! | TGTTCTGTTTTTTTTACTAC+AGG | - | chr7.4:11113613-11113632 | MS.gene061851:CDS | 25.0% |
| !!! | TTATTAAACCTTTTGATTCC+AGG | + | chr7.4:11113893-11113912 | None:intergenic | 25.0% |
| ATGAAGTTGAGTACATTTGT+AGG | - | chr7.4:11113279-11113298 | MS.gene061851:intron | 30.0% | |
| ATTAATACTGACACAGATAC+CGG | + | chr7.4:11113546-11113565 | None:intergenic | 30.0% | |
| CACAAGATATTGGAAAAGTT+TGG | - | chr7.4:11114411-11114430 | MS.gene061851:CDS | 30.0% | |
| TTTGGTTATGTTATACAGGA+AGG | - | chr7.4:11114257-11114276 | MS.gene061851:CDS | 30.0% | |
| ! | AAGTCAGGGAAAAATTTTGA+AGG | - | chr7.4:11113401-11113420 | MS.gene061851:CDS | 30.0% |
| ! | GGTGAATTTTTCTCCAAAAA+TGG | - | chr7.4:11114278-11114297 | MS.gene061851:CDS | 30.0% |
| !! | GATTTTGACATGGTTCATTT+TGG | - | chr7.4:11113736-11113755 | MS.gene061851:intron | 30.0% |
| !!! | AGCTTTTGTTGATTTTGACA+TGG | - | chr7.4:11113726-11113745 | MS.gene061851:intron | 30.0% |
| AAGTTGAGTACATTTGTAGG+TGG | - | chr7.4:11113282-11113301 | MS.gene061851:intron | 35.0% | |
| AATTCAGGACTATATGCTGT+AGG | - | chr7.4:11114338-11114357 | MS.gene061851:CDS | 35.0% | |
| AGGTACAACATTTATGTCAC+CGG | + | chr7.4:11113873-11113892 | None:intergenic | 35.0% | |
| ATGCTTGTGATTACAAGTCA+GGG | - | chr7.4:11113387-11113406 | MS.gene061851:CDS | 35.0% | |
| ATGTTGTACCTGGAATCAAA+AGG | - | chr7.4:11113882-11113901 | MS.gene061851:CDS | 35.0% | |
| ATTCAGGACTATATGCTGTA+GGG | - | chr7.4:11114339-11114358 | MS.gene061851:CDS | 35.0% | |
| GAAGGACTTTCTGAATTCAA+AGG | - | chr7.4:11113353-11113372 | MS.gene061851:intron | 35.0% | |
| GTGCTACCTAGAGAAATATT+TGG | - | chr7.4:11113641-11113660 | MS.gene061851:CDS | 35.0% | |
| TATGCTTGTGATTACAAGTC+AGG | - | chr7.4:11113386-11113405 | MS.gene061851:CDS | 35.0% | |
| TCAGAAAGTCCTTCAATTTC+AGG | + | chr7.4:11113347-11113366 | None:intergenic | 35.0% | |
| TCTGGCTAAATCTTAGTTGT+TGG | - | chr7.4:11114075-11114094 | MS.gene061851:CDS | 35.0% | |
| TCTGTGTTCTTCAACTTCAA+AGG | + | chr7.4:11113803-11113822 | None:intergenic | 35.0% | |
| TTGAAGTTGAAGAACACAGA+AGG | - | chr7.4:11113803-11113822 | MS.gene061851:intron | 35.0% | |
| TTGGGTGACATGGAAAAATA+TGG | - | chr7.4:11113755-11113774 | MS.gene061851:intron | 35.0% | |
| ! | ACATGTCTTTTTCTATCCTC+CGG | + | chr7.4:11114150-11114169 | None:intergenic | 35.0% |
| ! | CATCTTTGGGTATCCATTTT+TGG | + | chr7.4:11114294-11114313 | None:intergenic | 35.0% |
| ! | GGAAAGAAAGTTCTTGTTGT+TGG | - | chr7.4:11113422-11113441 | MS.gene061851:CDS | 35.0% |
| ! | GGTAGTTGACAGAATTGTTT+TGG | + | chr7.4:11113095-11113114 | None:intergenic | 35.0% |
| ! | TCCGACAACAAAGATTTTAC+CGG | - | chr7.4:11114128-11114147 | MS.gene061851:CDS | 35.0% |
| ! | TCCGGTAAAATCTTTGTTGT+CGG | + | chr7.4:11114132-11114151 | None:intergenic | 35.0% |
| ! | TGTGTTACTCCTGAAATTGA+AGG | - | chr7.4:11113335-11113354 | MS.gene061851:intron | 35.0% |
| !! | AAAGTTCTTGTTGTTGGATG+TGG | - | chr7.4:11113428-11113447 | MS.gene061851:CDS | 35.0% |
| !! | GCTTTGGAGAAAATTAGATC+CGG | - | chr7.4:11113851-11113870 | MS.gene061851:intron | 35.0% |
| !! | GTTTCTTTGAAGGGTATTCA+GGG | + | chr7.4:11113142-11113161 | None:intergenic | 35.0% |
| !! | TGTTTCTTTGAAGGGTATTC+AGG | + | chr7.4:11113143-11113162 | None:intergenic | 35.0% |
| !!! | GTAAGTTCTTTTTCAGTGTC+CGG | - | chr7.4:11113524-11113543 | MS.gene061851:CDS | 35.0% |
| !!! | GTTGACAGAATTGTTTTGGA+AGG | + | chr7.4:11113091-11113110 | None:intergenic | 35.0% |
| AACTTCAAAGGACCCATTGA+AGG | + | chr7.4:11113791-11113810 | None:intergenic | 40.0% | |
| AGCATGTCTTAGAGAACAAG+GGG | - | chr7.4:11112986-11113005 | MS.gene061851:CDS | 40.0% | |
| ATATTCACCTGAAGCCAAGA+AGG | + | chr7.4:11113998-11114017 | None:intergenic | 40.0% | |
| CAACTAAGATTTAGCCAGAG+CGG | + | chr7.4:11114074-11114093 | None:intergenic | 40.0% | |
| CAGCATGTCTTAGAGAACAA+GGG | - | chr7.4:11112985-11113004 | MS.gene061851:CDS | 40.0% | |
| CATGTGGAAATGGCATCTTT+GGG | + | chr7.4:11114307-11114326 | None:intergenic | 40.0% | |
| CTGATTGCATAGCATCACTA+TGG | - | chr7.4:11113033-11113052 | MS.gene061851:CDS | 40.0% | |
| GCTAAGTATGATGAAACCAG+TGG | - | chr7.4:11113236-11113255 | MS.gene061851:intron | 40.0% | |
| GGTATCAAAAGGCCTTCAAT+GGG | - | chr7.4:11113776-11113795 | MS.gene061851:intron | 40.0% | |
| GGTGACATAAATGTTGTACC+TGG | - | chr7.4:11113872-11113891 | MS.gene061851:CDS | 40.0% | |
| GTGAAGTTTCAATCTGTCGT+AGG | + | chr7.4:11113069-11113088 | None:intergenic | 40.0% | |
| GTTGTTGGATGTGGAAATTC+TGG | - | chr7.4:11113437-11113456 | MS.gene061851:CDS | 40.0% | |
| TAGCGGTTATGATGTTGAAG+TGG | - | chr7.4:11113681-11113700 | MS.gene061851:CDS | 40.0% | |
| TATTCACCTGAAGCCAAGAA+GGG | + | chr7.4:11113997-11114016 | None:intergenic | 40.0% | |
| TCATCATGCTTTACCTTCCA+TGG | - | chr7.4:11113487-11113506 | MS.gene061851:CDS | 40.0% | |
| TGAACACACTCGTTGAATTG+CGG | + | chr7.4:11113212-11113231 | None:intergenic | 40.0% | |
| TGGTATCAAAAGGCCTTCAA+TGG | - | chr7.4:11113775-11113794 | MS.gene061851:intron | 40.0% | |
| TGTTGAAGTGGTTACCACTT+TGG | - | chr7.4:11113693-11113712 | MS.gene061851:CDS | 40.0% | |
| ! | AAAGCACCAATGTCCAAAAC+CGG | + | chr7.4:11113836-11113855 | None:intergenic | 40.0% |
| ! | AGTTGACTTAGATCCTCTTC+TGG | - | chr7.4:11114048-11114067 | MS.gene061851:CDS | 40.0% |
| ! | GACAACAAAGATTTTACCGG+AGG | - | chr7.4:11114131-11114150 | MS.gene061851:CDS | 40.0% |
| ! | TGGATGTGGAAATTCTGGAA+TGG | - | chr7.4:11113442-11113461 | MS.gene061851:CDS | 40.0% |
| !! | ATGATGAAACCAGTGGATTG+TGG | - | chr7.4:11113243-11113262 | MS.gene061851:intron | 40.0% |
| !! | ATGGTTCATTTTGGGTGACA+TGG | - | chr7.4:11113745-11113764 | MS.gene061851:intron | 40.0% |
| !! | GGTGAAGTTGAGCTTGTTAA+TGG | - | chr7.4:11113917-11113936 | MS.gene061851:CDS | 40.0% |
| AGCTCTTTCGAGAACAACGA+AGG | + | chr7.4:11113015-11113034 | None:intergenic | 45.0% | |
| AGCTTGTCCACAATCCAAAG+TGG | + | chr7.4:11113710-11113729 | None:intergenic | 45.0% | |
| CATGGTTGGAAGGGAAATTC+AGG | - | chr7.4:11114323-11114342 | MS.gene061851:CDS | 45.0% | |
| CCATGTGGAAATGGCATCTT+TGG | + | chr7.4:11114308-11114327 | None:intergenic | 45.0% | |
| CCATTTCCACATGGTTGGAA+GGG | - | chr7.4:11114314-11114333 | MS.gene061851:CDS | 45.0% | |
| CTGTAGGGTTCACAAAGAGA+GGG | - | chr7.4:11114354-11114373 | MS.gene061851:CDS | 45.0% | |
| GAACACACTCGTTGAATTGC+GGG | + | chr7.4:11113211-11113230 | None:intergenic | 45.0% | |
| GAACACAGAAGGAAAGACAC+CGG | - | chr7.4:11113814-11113833 | MS.gene061851:intron | 45.0% | |
| GAATTTCCCTTCCAACCATG+TGG | + | chr7.4:11114323-11114342 | None:intergenic | 45.0% | |
| GATGCAGTTGTTCTTGCTAC+CGG | - | chr7.4:11113956-11113975 | MS.gene061851:CDS | 45.0% | |
| GCAGCATGTCTTAGAGAACA+AGG | - | chr7.4:11112984-11113003 | MS.gene061851:CDS | 45.0% | |
| GCTCTTTCGAGAACAACGAA+GGG | + | chr7.4:11113014-11113033 | None:intergenic | 45.0% | |
| GGGTATTCAGGGAAATCTTC+AGG | + | chr7.4:11113131-11113150 | None:intergenic | 45.0% | |
| GTCAATGGACCTGTGATCAT+AGG | - | chr7.4:11112936-11112955 | MS.gene061851:CDS | 45.0% | |
| GTCCATTGACCCAAATGCAA+CGG | + | chr7.4:11112926-11112945 | None:intergenic | 45.0% | |
| GTGGTTACCACTTTGGATTG+TGG | - | chr7.4:11113700-11113719 | MS.gene061851:CDS | 45.0% | |
| TCAGGGAAATCTTCAGGCAT+TGG | + | chr7.4:11113125-11113144 | None:intergenic | 45.0% | |
| TTCACAAAGAGAGGGCTTTC+TGG | - | chr7.4:11114362-11114381 | MS.gene061851:CDS | 45.0% | |
| TTCCATGGTTGTTCGTAGCT+CGG | - | chr7.4:11113502-11113521 | MS.gene061851:CDS | 45.0% | |
| ! | AGATGCCATTTCCACATGGT+TGG | - | chr7.4:11114309-11114328 | MS.gene061851:CDS | 45.0% |
| ! | CCAAAGATGCCATTTCCACA+TGG | - | chr7.4:11114305-11114324 | MS.gene061851:CDS | 45.0% |
| !! | ATGAAACCAGTGGATTGTGG+AGG | - | chr7.4:11113246-11113265 | MS.gene061851:intron | 45.0% |
| !! | GGAAATCTTCAGGCATTGGA+AGG | + | chr7.4:11113121-11113140 | None:intergenic | 45.0% |
| !! | TCTTCAGGCATTGGAAGGTT+AGG | + | chr7.4:11113116-11113135 | None:intergenic | 45.0% |
| !! | TGAAACCAGTGGATTGTGGA+GGG | - | chr7.4:11113247-11113266 | MS.gene061851:intron | 45.0% |
| !!! | AAGACACCGGTTTTGGACAT+TGG | - | chr7.4:11113827-11113846 | MS.gene061851:intron | 45.0% |
| !!! | AGAAGGAAAGACACCGGTTT+TGG | - | chr7.4:11113820-11113839 | MS.gene061851:intron | 45.0% |
| !!! | GGTTTTGGACATTGGTGCTT+TGG | - | chr7.4:11113835-11113854 | MS.gene061851:intron | 45.0% |
| AACGGCGTGAGAGAAAGTCT+TGG | + | chr7.4:11112908-11112927 | None:intergenic | 50.0% | |
| ATCATAGGTGCAGGTCCATC+TGG | - | chr7.4:11112951-11112970 | MS.gene061851:CDS | 50.0% | |
| CAATGTCCCTTCTTGGCTTC+AGG | - | chr7.4:11113988-11114007 | MS.gene061851:CDS | 50.0% | |
| CCCTTCCAACCATGTGGAAA+TGG | + | chr7.4:11114317-11114336 | None:intergenic | 50.0% | |
| CTTAACCCTCCACAATCCAC+TGG | + | chr7.4:11113255-11113274 | None:intergenic | 50.0% | |
| GAGCTACGAACAACCATGGA+AGG | + | chr7.4:11113503-11113522 | None:intergenic | 50.0% | |
| GCAACGTCTATGACAAGCAG+TGG | + | chr7.4:11114468-11114487 | None:intergenic | 50.0% | |
| GCCATTTCCACATGGTTGGA+AGG | - | chr7.4:11114313-11114332 | MS.gene061851:CDS | 50.0% | |
| GCTGTAGGGTTCACAAAGAG+AGG | - | chr7.4:11114353-11114372 | MS.gene061851:CDS | 50.0% | |
| TACCGAGCTACGAACAACCA+TGG | + | chr7.4:11113507-11113526 | None:intergenic | 50.0% | |
| TCTCTCACGCCGTTGCATTT+GGG | - | chr7.4:11112914-11112933 | MS.gene061851:CDS | 50.0% | |
| TTCTCTCACGCCGTTGCATT+TGG | - | chr7.4:11112913-11112932 | MS.gene061851:CDS | 50.0% | |
| !! | AGGTCCATCTGGTCTTGCAA+CGG | - | chr7.4:11112962-11112981 | MS.gene061851:CDS | 50.0% |
| !! | AGGTGGCTTGTTGTTGCTAC+TGG | - | chr7.4:11113299-11113318 | MS.gene061851:intron | 50.0% |
| ACCGCAGCAATGTCCCTTCT+TGG | - | chr7.4:11113981-11114000 | MS.gene061851:CDS | 55.0% | |
| AGGGACATTGCTGCGGTAAC+CGG | + | chr7.4:11113978-11113997 | None:intergenic | 55.0% | |
| CGCCGTTGCATTTGGGTCAA+TGG | - | chr7.4:11112921-11112940 | MS.gene061851:CDS | 55.0% | |
| GCCAAGAAGGGACATTGCTG+CGG | + | chr7.4:11113985-11114004 | None:intergenic | 55.0% | |
| GGACCTGCACCTATGATCAC+AGG | + | chr7.4:11112948-11112967 | None:intergenic | 55.0% | |
| GGACCTGTGATCATAGGTGC+AGG | - | chr7.4:11112942-11112961 | MS.gene061851:CDS | 55.0% | |
| AGATCCTCTTCTGGCCGCTC+TGG | - | chr7.4:11114057-11114076 | MS.gene061851:CDS | 60.0% | |
| GCTGCCGTTGCAAGACCAGA+TGG | + | chr7.4:11112969-11112988 | None:intergenic | 60.0% | |
| TTAGCCAGAGCGGCCAGAAG+AGG | + | chr7.4:11114064-11114083 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 11112876 | 11114502 | 11112876 | ID=MS.gene061851 |
| chr7.4 | mRNA | 11112876 | 11114502 | 11112876 | ID=MS.gene061851.t1;Parent=MS.gene061851 |
| chr7.4 | exon | 11113855 | 11114502 | 11113855 | ID=MS.gene061851.t1.exon1;Parent=MS.gene061851.t1 |
| chr7.4 | CDS | 11113855 | 11114502 | 11113855 | ID=cds.MS.gene061851.t1;Parent=MS.gene061851.t1 |
| chr7.4 | exon | 11113369 | 11113743 | 11113369 | ID=MS.gene061851.t1.exon2;Parent=MS.gene061851.t1 |
| chr7.4 | CDS | 11113369 | 11113743 | 11113369 | ID=cds.MS.gene061851.t1;Parent=MS.gene061851.t1 |
| chr7.4 | exon | 11112876 | 11113103 | 11112876 | ID=MS.gene061851.t1.exon3;Parent=MS.gene061851.t1 |
| chr7.4 | CDS | 11112876 | 11113103 | 11112876 | ID=cds.MS.gene061851.t1;Parent=MS.gene061851.t1 |
| Gene Sequence |
| Protein sequence |
