Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014609.t1 | XP_013462048.1 | 96.2 | 364 | 14 | 0 | 1 | 364 | 1 | 364 | 3.20E-202 | 714.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014609.t1 | O81862 | 51.1 | 364 | 165 | 6 | 11 | 365 | 9 | 368 | 6.1e-93 | 342.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014609.t1 | I3STX0 | 96.2 | 364 | 14 | 0 | 1 | 364 | 1 | 364 | 2.3e-202 | 714.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014609 | MS.gene72022 | PPI |
| MS.gene53841 | MS.gene014609 | PPI |
| MS.gene40706 | MS.gene014609 | PPI |
| MS.gene014609 | MS.gene48549 | PPI |
| MS.gene014609 | MS.gene44679 | PPI |
| MS.gene014609 | MS.gene57747 | PPI |
| MS.gene014609 | MS.gene014611 | PPI |
| MS.gene014609 | MS.gene014610 | PPI |
| MS.gene014609 | MS.gene036626 | PPI |
| MS.gene014609 | MS.gene40705 | PPI |
| MS.gene014609 | MS.gene44682 | PPI |
| MS.gene014609 | MS.gene40257 | PPI |
| MS.gene58750 | MS.gene014609 | PPI |
| MS.gene055584 | MS.gene014609 | PPI |
| MS.gene014609 | MS.gene72023 | PPI |
| MS.gene014609 | MS.gene40707 | PPI |
| MS.gene014609 | MS.gene041428 | PPI |
| MS.gene014609 | MS.gene58750 | PPI |
| MS.gene014609 | MS.gene021944 | PPI |
| MS.gene014609 | MS.gene72024 | PPI |
| MS.gene014609 | MS.gene40256 | PPI |
| MS.gene014609 | MS.gene43244 | PPI |
| MS.gene014609 | MS.gene021954 | PPI |
| MS.gene40255 | MS.gene014609 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014609.t1 | MTR_3g110320 | 96.154 | 364 | 14 | 0 | 1 | 364 | 1 | 364 | 0.0 | 721 |
| MS.gene014609.t1 | MTR_3g110320 | 96.089 | 358 | 14 | 0 | 1 | 358 | 1 | 358 | 0.0 | 708 |
| MS.gene014609.t1 | MTR_3g110280 | 84.958 | 359 | 53 | 1 | 1 | 358 | 1 | 359 | 0.0 | 618 |
| MS.gene014609.t1 | MTR_4g116920 | 75.209 | 359 | 73 | 3 | 1 | 358 | 1 | 344 | 0.0 | 536 |
| MS.gene014609.t1 | MTR_4g117040 | 37.197 | 371 | 205 | 10 | 9 | 361 | 6 | 366 | 1.57e-63 | 216 |
| MS.gene014609.t1 | MTR_4g117020 | 35.580 | 371 | 215 | 9 | 3 | 359 | 2 | 362 | 2.02e-62 | 213 |
| MS.gene014609.t1 | MTR_1g013150 | 34.770 | 348 | 210 | 5 | 30 | 364 | 40 | 383 | 2.35e-62 | 204 |
| MS.gene014609.t1 | MTR_4g117030 | 36.637 | 333 | 189 | 8 | 41 | 359 | 1 | 325 | 2.31e-59 | 204 |
| MS.gene014609.t1 | MTR_4g117000 | 33.526 | 346 | 214 | 7 | 30 | 363 | 35 | 376 | 5.02e-57 | 190 |
| MS.gene014609.t1 | MTR_4g116990 | 34.857 | 350 | 208 | 7 | 30 | 363 | 37 | 382 | 9.13e-55 | 184 |
| MS.gene014609.t1 | MTR_4g117800 | 35.227 | 176 | 110 | 2 | 6 | 180 | 4 | 176 | 8.78e-26 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014609.t1 | AT4G19810 | 52.473 | 364 | 160 | 6 | 11 | 365 | 9 | 368 | 1.08e-121 | 356 |
| MS.gene014609.t1 | AT4G19810 | 52.473 | 364 | 160 | 6 | 11 | 365 | 9 | 368 | 1.08e-121 | 356 |
| MS.gene014609.t1 | AT4G19820 | 48.493 | 365 | 175 | 6 | 10 | 365 | 6 | 366 | 7.33e-107 | 318 |
| MS.gene014609.t1 | AT4G19800 | 45.349 | 344 | 176 | 5 | 25 | 360 | 2 | 341 | 4.54e-96 | 291 |
| MS.gene014609.t1 | AT4G19750 | 45.429 | 361 | 171 | 10 | 17 | 360 | 1 | 352 | 5.95e-93 | 282 |
| MS.gene014609.t1 | AT4G19760 | 44.744 | 371 | 175 | 10 | 17 | 363 | 1 | 365 | 1.94e-92 | 281 |
| MS.gene014609.t1 | AT4G19720 | 42.254 | 355 | 180 | 7 | 29 | 365 | 5 | 352 | 2.40e-86 | 265 |
| MS.gene014609.t1 | AT4G19730 | 40.588 | 340 | 169 | 8 | 17 | 331 | 1 | 332 | 1.51e-69 | 221 |
| MS.gene014609.t1 | AT4G19770 | 42.969 | 256 | 136 | 4 | 113 | 360 | 1 | 254 | 9.77e-60 | 194 |
| MS.gene014609.t1 | AT4G19740 | 35.897 | 195 | 103 | 6 | 136 | 316 | 24 | 210 | 3.60e-29 | 112 |
Find 92 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATGAAAGTTGTTATTTC+TGG | 0.111144 | 3.1:+88333229 | None:intergenic |
| CTATAAATTCTACGGTTATT+AGG | 0.196560 | 3.1:+88332804 | None:intergenic |
| CAGATGAAGGTATCAATAAA+TGG | 0.236425 | 3.1:-88332902 | MS.gene014609:CDS |
| GCCAAGCAAAATGGATTGTT+TGG | 0.270489 | 3.1:-88332621 | MS.gene014609:CDS |
| TCTACAAAAGCTATCATTAA+AGG | 0.274441 | 3.1:-88333548 | MS.gene014609:CDS |
| GTTATTTATGCCAAGCAAAA+TGG | 0.277191 | 3.1:-88332630 | MS.gene014609:CDS |
| ACTCAAAATTACTGCTTCAT+AGG | 0.281254 | 3.1:-88332699 | MS.gene014609:CDS |
| GCACTTGGCTTACCCTACTA+TGG | 0.305005 | 3.1:-88332849 | MS.gene014609:CDS |
| TCTCCACTTGTAACCATAGT+AGG | 0.337636 | 3.1:+88332836 | None:intergenic |
| ACCACAGAGGCTAGGAGTTC+CGG | 0.350008 | 3.1:-88333122 | MS.gene014609:CDS |
| TACTCTTTGCCTGAACAGTT+TGG | 0.353606 | 3.1:+88333375 | None:intergenic |
| GTGAAAACCCTTCTATCAAT+TGG | 0.372121 | 3.1:-88333347 | MS.gene014609:CDS |
| ATATTGAACAAGACAGCAAC+TGG | 0.377045 | 3.1:-88332584 | MS.gene014609:CDS |
| CACCACCACCAATTGATAGA+AGG | 0.385809 | 3.1:+88333339 | None:intergenic |
| ACTCTTTGCCTGAACAGTTT+GGG | 0.393044 | 3.1:+88333376 | None:intergenic |
| TAACAACAGTGCCGGCTTGC+CGG | 0.396736 | 3.1:+88333103 | None:intergenic |
| TTCATGGCCTTGATCTTGAC+TGG | 0.404722 | 3.1:-88333214 | MS.gene014609:CDS |
| GCCAGAAATAACAACTTTCA+TGG | 0.408115 | 3.1:-88333230 | MS.gene014609:CDS |
| AGTAAAGCTACGCAGGGACT+AGG | 0.428936 | 3.1:-88332783 | MS.gene014609:CDS |
| TGTTGCAAACAACTTGGATT+GGG | 0.430200 | 3.1:-88333021 | MS.gene014609:CDS |
| GTAAAGCTACGCAGGGACTA+GGG | 0.431578 | 3.1:-88332782 | MS.gene014609:CDS |
| ATCAATAAATGGGTAGGGTT+AGG | 0.436423 | 3.1:-88332891 | MS.gene014609:CDS |
| TGCTGCGTTTGCAGAAGAAA+TGG | 0.447121 | 3.1:+88333415 | None:intergenic |
| GACGCAGAAAAGGCCAACTT+TGG | 0.449817 | 3.1:-88333176 | MS.gene014609:CDS |
| AACCTTCACCCAAACTGTTC+AGG | 0.452083 | 3.1:-88333384 | MS.gene014609:CDS |
| CTATCATTAAAGGTGGCTAT+TGG | 0.455710 | 3.1:-88333538 | MS.gene014609:CDS |
| CTGCACTGAACAAGCCAGTT+GGG | 0.459093 | 3.1:+88332922 | None:intergenic |
| CTCAAAATTACTGCTTCATA+GGG | 0.461311 | 3.1:-88332698 | MS.gene014609:CDS |
| AACTGGGCTCTTTCTGAAGC+AGG | 0.469880 | 3.1:-88332567 | MS.gene014609:intron |
| ATGTTGCAAACAACTTGGAT+TGG | 0.470996 | 3.1:-88333022 | MS.gene014609:CDS |
| ACTGCTTCATAGGGACAGAT+TGG | 0.474272 | 3.1:-88332689 | MS.gene014609:CDS |
| TCTGATTAGTGAACCAAAGT+TGG | 0.474919 | 3.1:+88333163 | None:intergenic |
| ACCAGGTGTGCTAGCCATGT+TGG | 0.477903 | 3.1:+88333289 | None:intergenic |
| TCAAGATGTTGCAAACAACT+TGG | 0.478830 | 3.1:-88333027 | MS.gene014609:CDS |
| CTATCAATTGGTGGTGGTGG+TGG | 0.478983 | 3.1:-88333335 | MS.gene014609:CDS |
| TCCATCCTCTGACGCAGAAA+AGG | 0.482858 | 3.1:-88333186 | MS.gene014609:CDS |
| GCGGGTGGTTGTGTTTGAGT+TGG | 0.482952 | 3.1:+88332957 | None:intergenic |
| GATAACTATCTGAAATGAAA+AGG | 0.483356 | 3.1:+88332979 | None:intergenic |
| TTGGTTCACTAATCAGAGAA+TGG | 0.486996 | 3.1:-88333157 | MS.gene014609:CDS |
| GGCTATTGGTATTCTGATAG+TGG | 0.488891 | 3.1:-88333524 | MS.gene014609:CDS |
| TAGCTTTACTATAAATTCTA+CGG | 0.491563 | 3.1:+88332796 | None:intergenic |
| GCCAACATGGCTAGCACACC+TGG | 0.491851 | 3.1:-88333290 | MS.gene014609:CDS |
| CTATGGTTACAAGTGGAGAT+TGG | 0.494965 | 3.1:-88332832 | MS.gene014609:CDS |
| TCATGGCCTTGATCTTGACT+GGG | 0.503034 | 3.1:-88333213 | MS.gene014609:CDS |
| TGGTGGTGGTGGTCCTACTT+TGG | 0.504618 | 3.1:-88333324 | MS.gene014609:CDS |
| AGATGAAGGTATCAATAAAT+GGG | 0.508361 | 3.1:-88332901 | MS.gene014609:CDS |
| GGCTAGGAGTTCCGGCAAGC+CGG | 0.510084 | 3.1:-88333114 | MS.gene014609:CDS |
| GAAGGTATCAATAAATGGGT+AGG | 0.514625 | 3.1:-88332897 | MS.gene014609:CDS |
| CTTCTATCAATTGGTGGTGG+TGG | 0.515237 | 3.1:-88333338 | MS.gene014609:CDS |
| TTGGAGAATCATGAGGAGAG+TGG | 0.515988 | 3.1:+88333583 | None:intergenic |
| AGTTGTTATTTCTGGCTACT+CGG | 0.517027 | 3.1:+88333237 | None:intergenic |
| AACAAGTGGGTGAAATAAGA+AGG | 0.524356 | 3.1:+88333479 | None:intergenic |
| TGCCTGAACAGTTTGGGTGA+AGG | 0.526889 | 3.1:+88333382 | None:intergenic |
| TTGCAGCTTCTCGAAACTGG+GGG | 0.527885 | 3.1:-88331531 | MS.gene014609:intron |
| CACTCAAAGTATAGCTAACA+AGG | 0.528080 | 3.1:-88332652 | MS.gene014609:CDS |
| TTGTAGAGGAAAATTGGAGT+TGG | 0.544691 | 3.1:+88333564 | None:intergenic |
| TTGTTTGCAACATCTTGACC+TGG | 0.548598 | 3.1:+88333032 | None:intergenic |
| TTGTTATCTGCTGCAGTAGG+TGG | 0.549211 | 3.1:-88333086 | MS.gene014609:CDS |
| CTGCCGTGACCACAGAGGCT+AGG | 0.554571 | 3.1:-88333130 | MS.gene014609:CDS |
| ACCACCACCAATTGATAGAA+GGG | 0.556168 | 3.1:+88333340 | None:intergenic |
| CTGTTGTTATCTGCTGCAGT+AGG | 0.558516 | 3.1:-88333089 | MS.gene014609:CDS |
| AATTTATAGTAAAGCTACGC+AGG | 0.562146 | 3.1:-88332790 | MS.gene014609:CDS |
| CAGCAAATGCACAGAACAAG+TGG | 0.562193 | 3.1:+88333465 | None:intergenic |
| GATACTCCCAGTCAAGATCA+AGG | 0.567638 | 3.1:+88333207 | None:intergenic |
| CTCCACTTGTAACCATAGTA+GGG | 0.567864 | 3.1:+88332837 | None:intergenic |
| TCTGCACTGAACAAGCCAGT+TGG | 0.568233 | 3.1:+88332921 | None:intergenic |
| AAGGTATCAATAAATGGGTA+GGG | 0.575326 | 3.1:-88332896 | MS.gene014609:CDS |
| GGCTTGTTCAGTGCAGATGA+AGG | 0.580026 | 3.1:-88332915 | MS.gene014609:CDS |
| ACTCCTAGCCTCTGTGGTCA+CGG | 0.583379 | 3.1:+88333127 | None:intergenic |
| TTTGCAGCTTCTCGAAACTG+GGG | 0.587515 | 3.1:-88331532 | MS.gene014609:intron |
| GCAGCAGATAACAACAGTGC+CGG | 0.602120 | 3.1:+88333095 | None:intergenic |
| AAAACCCTTCTATCAATTGG+TGG | 0.603268 | 3.1:-88333344 | MS.gene014609:CDS |
| ACCCTTCTATCAATTGGTGG+TGG | 0.603753 | 3.1:-88333341 | MS.gene014609:CDS |
| CTGTGTTGGTAGCAGTGTCA+AGG | 0.605213 | 3.1:+88333441 | None:intergenic |
| TTCATAGGGACAGATTGGTA+TGG | 0.606399 | 3.1:-88332684 | MS.gene014609:CDS |
| TACCCTACTATGGTTACAAG+TGG | 0.610838 | 3.1:-88332839 | MS.gene014609:CDS |
| ATTTATAGTAAAGCTACGCA+GGG | 0.611007 | 3.1:-88332789 | MS.gene014609:CDS |
| GATTAATATCAGAAGCTGCA+AGG | 0.615788 | 3.1:+88333501 | None:intergenic |
| AGAAGAAATGGTCACTGTGT+TGG | 0.625292 | 3.1:+88333427 | None:intergenic |
| TGCAGCTTCTCGAAACTGGG+GGG | 0.625304 | 3.1:-88331530 | MS.gene014609:intron |
| TAAAGCTACGCAGGGACTAG+GGG | 0.627917 | 3.1:-88332781 | MS.gene014609:CDS |
| ACTAGGGGCAGTGAAGTACA+AGG | 0.628451 | 3.1:-88332766 | MS.gene014609:CDS |
| ATTGGAGTTGGAGAATCATG+AGG | 0.636575 | 3.1:+88333576 | None:intergenic |
| ACAAAAGCTATCATTAAAGG+TGG | 0.641041 | 3.1:-88333545 | MS.gene014609:CDS |
| GCCGGAACTCCTAGCCTCTG+TGG | 0.649064 | 3.1:+88333121 | None:intergenic |
| TGTTTGCAACATCTTGACCT+GGG | 0.652675 | 3.1:+88333033 | None:intergenic |
| TATTGAACAAGACAGCAACT+GGG | 0.675280 | 3.1:-88332583 | MS.gene014609:CDS |
| TGAGGAGAGTGGAAACCAAG+AGG | 0.680560 | 3.1:+88333594 | None:intergenic |
| AGCAAATGCACAGAACAAGT+GGG | 0.684809 | 3.1:+88333466 | None:intergenic |
| ACTCCACTAAAATACTACCC+AGG | 0.700599 | 3.1:-88333050 | MS.gene014609:CDS |
| AACATGGCTAGCACACCTGG+TGG | 0.701611 | 3.1:-88333287 | MS.gene014609:CDS |
| GAGAGCTGCCGTGACCACAG+AGG | 0.748821 | 3.1:-88333135 | MS.gene014609:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTGTTTGTTTTAAAAT+GGG | - | chr3.1:88333494-88333513 | MS.gene014609:CDS | 10.0% |
| !!! | TTTTATTGTTTGTTTTAAAA+TGG | - | chr3.1:88333493-88333512 | MS.gene014609:CDS | 10.0% |
| !! | GAACTAAAAAAAAACTAATA+AGG | + | chr3.1:88333256-88333275 | None:intergenic | 15.0% |
| !! | TATATTGTAAAAACAAAACT+AGG | - | chr3.1:88333420-88333439 | MS.gene014609:CDS | 15.0% |
| !!! | ATTGATTAATTTGTTTTTTG+AGG | + | chr3.1:88333364-88333383 | None:intergenic | 15.0% |
| !!! | TTGATTAATTTGTTTTTTGA+GGG | + | chr3.1:88333363-88333382 | None:intergenic | 15.0% |
| !! | AAAACAAACAATAAAATCAG+TGG | + | chr3.1:88333489-88333508 | None:intergenic | 20.0% |
| !! | GAGTGAAATTTATAACTATA+AGG | + | chr3.1:88333278-88333297 | None:intergenic | 20.0% |
| !! | TACAAGGATATAAAAAATAC+TGG | - | chr3.1:88332395-88332414 | MS.gene014609:intron | 20.0% |
| !!! | AAGAATCTATGAATGATTTT+CGG | + | chr3.1:88331884-88331903 | None:intergenic | 20.0% |
| !!! | TAGCTTTACTATAAATTCTA+CGG | + | chr3.1:88332352-88332371 | None:intergenic | 20.0% |
| !!! | TGATTAATTTGTTTTTTGAG+GGG | + | chr3.1:88333362-88333381 | None:intergenic | 20.0% |
| !!! | TTTTCATAAAGATATTAGCA+GGG | + | chr3.1:88332837-88332856 | None:intergenic | 20.0% |
| !!! | TTTTTACTCAAGTAATAAGT+GGG | + | chr3.1:88333462-88333481 | None:intergenic | 20.0% |
| !!! | TTTTTTACTCAAGTAATAAG+TGG | + | chr3.1:88333463-88333482 | None:intergenic | 20.0% |
| ! | AAGGATATAAAAAATACTGG+AGG | - | chr3.1:88332398-88332417 | MS.gene014609:intron | 25.0% |
| ! | AGGATATAAAAAATACTGGA+GGG | - | chr3.1:88332399-88332418 | MS.gene014609:intron | 25.0% |
| ! | CAATGAAACTGTGTTTAATT+AGG | + | chr3.1:88332625-88332644 | None:intergenic | 25.0% |
| ! | CTATAAATTCTACGGTTATT+AGG | + | chr3.1:88332344-88332363 | None:intergenic | 25.0% |
| ! | TAATTCGTGCATATATAACT+AGG | - | chr3.1:88332693-88332712 | MS.gene014609:CDS | 25.0% |
| ! | TACTTATTCAACTAAGCAAA+AGG | + | chr3.1:88333054-88333073 | None:intergenic | 25.0% |
| ! | TCTACAAAAGCTATCATTAA+AGG | - | chr3.1:88331597-88331616 | MS.gene014609:intron | 25.0% |
| !! | CTTTTCATAAAGATATTAGC+AGG | + | chr3.1:88332838-88332857 | None:intergenic | 25.0% |
| !! | GATAACTATCTGAAATGAAA+AGG | + | chr3.1:88332169-88332188 | None:intergenic | 25.0% |
| !! | TTTAATGATAGCTTTTGTAG+AGG | + | chr3.1:88331598-88331617 | None:intergenic | 25.0% |
| !!! | AGATGAAGGTATCAATAAAT+GGG | - | chr3.1:88332244-88332263 | MS.gene014609:intron | 25.0% |
| AAAAAAAGAGTCACATGGTT+TGG | - | chr3.1:88333538-88333557 | MS.gene014609:CDS | 30.0% | |
| AAGTAATAAGTGGGATGTTT+AGG | + | chr3.1:88333453-88333472 | None:intergenic | 30.0% | |
| AATTTATAGTAAAGCTACGC+AGG | - | chr3.1:88332355-88332374 | MS.gene014609:intron | 30.0% | |
| ACAAAAGCTATCATTAAAGG+TGG | - | chr3.1:88331600-88331619 | MS.gene014609:intron | 30.0% | |
| ACTCAAAATTACTGCTTCAT+AGG | - | chr3.1:88332446-88332465 | MS.gene014609:intron | 30.0% | |
| ATGCACCAGAATTATTTACT+TGG | - | chr3.1:88332865-88332884 | MS.gene014609:CDS | 30.0% | |
| ATTTATAGTAAAGCTACGCA+GGG | - | chr3.1:88332356-88332375 | MS.gene014609:intron | 30.0% | |
| CCAAAAAATAAACTTGCACT+TGG | - | chr3.1:88332281-88332300 | MS.gene014609:intron | 30.0% | |
| CTAGGAGTAATTAGTTAAAG+AGG | - | chr3.1:88332711-88332730 | MS.gene014609:CDS | 30.0% | |
| CTCAAAATTACTGCTTCATA+GGG | - | chr3.1:88332447-88332466 | MS.gene014609:intron | 30.0% | |
| GCTTAAATAAGACTCATTCT+TGG | - | chr3.1:88333016-88333035 | MS.gene014609:CDS | 30.0% | |
| GTTATTTATGCCAAGCAAAA+TGG | - | chr3.1:88332515-88332534 | MS.gene014609:intron | 30.0% | |
| TGTGACCAAGTAAATAATTC+TGG | + | chr3.1:88332873-88332892 | None:intergenic | 30.0% | |
| ! | AAACAACACAACACTTTTGT+CGG | + | chr3.1:88333085-88333104 | None:intergenic | 30.0% |
| ! | AAGGTATCAATAAATGGGTA+GGG | - | chr3.1:88332249-88332268 | MS.gene014609:intron | 30.0% |
| ! | GATTGTTTGGATATTTTGCT+TGG | - | chr3.1:88332537-88332556 | MS.gene014609:intron | 30.0% |
| ! | TAGCTTTTGTAGAGGAAAAT+TGG | + | chr3.1:88331590-88331609 | None:intergenic | 30.0% |
| !! | CAGATGAAGGTATCAATAAA+TGG | - | chr3.1:88332243-88332262 | MS.gene014609:intron | 30.0% |
| !! | GCAGTAATTTTGAGTATATG+TGG | + | chr3.1:88332441-88332460 | None:intergenic | 30.0% |
| !!! | AAACCATGTGACTCTTTTTT+TGG | + | chr3.1:88333539-88333558 | None:intergenic | 30.0% |
| !!! | AACCATGTGACTCTTTTTTT+GGG | + | chr3.1:88333538-88333557 | None:intergenic | 30.0% |
| !!! | CCAAGTGCAAGTTTATTTTT+TGG | + | chr3.1:88332284-88332303 | None:intergenic | 30.0% |
| !!! | TTGTTTTAAAATGGGTCACA+CGG | - | chr3.1:88333502-88333521 | MS.gene014609:CDS | 30.0% |
| AAAACCCTTCTATCAATTGG+TGG | - | chr3.1:88331801-88331820 | MS.gene014609:intron | 35.0% | |
| AAAATTGACGCCAAAATGAC+TGG | + | chr3.1:88333195-88333214 | None:intergenic | 35.0% | |
| AACAAGTGGGTGAAATAAGA+AGG | + | chr3.1:88331669-88331688 | None:intergenic | 35.0% | |
| ATATTGAACAAGACAGCAAC+TGG | - | chr3.1:88332561-88332580 | MS.gene014609:intron | 35.0% | |
| ATCAATAAATGGGTAGGGTT+AGG | - | chr3.1:88332254-88332273 | MS.gene014609:intron | 35.0% | |
| ATGTTGCAAACAACTTGGAT+TGG | - | chr3.1:88332123-88332142 | MS.gene014609:intron | 35.0% | |
| CACTCAAAGTATAGCTAACA+AGG | - | chr3.1:88332493-88332512 | MS.gene014609:intron | 35.0% | |
| CTATCATTAAAGGTGGCTAT+TGG | - | chr3.1:88331607-88331626 | MS.gene014609:intron | 35.0% | |
| CTTAACCGACACTATATCTA+GGG | - | chr3.1:88333145-88333164 | MS.gene014609:CDS | 35.0% | |
| GATTAATATCAGAAGCTGCA+AGG | + | chr3.1:88331647-88331666 | None:intergenic | 35.0% | |
| GCCAGAAATAACAACTTTCA+TGG | - | chr3.1:88331915-88331934 | MS.gene014609:intron | 35.0% | |
| GTGAAAACCCTTCTATCAAT+TGG | - | chr3.1:88331798-88331817 | MS.gene014609:intron | 35.0% | |
| TAGAGTGACTCATTGTTAGT+CGG | + | chr3.1:88333572-88333591 | None:intergenic | 35.0% | |
| TATTGAACAAGACAGCAACT+GGG | - | chr3.1:88332562-88332581 | MS.gene014609:intron | 35.0% | |
| TCAAGATGTTGCAAACAACT+TGG | - | chr3.1:88332118-88332137 | MS.gene014609:intron | 35.0% | |
| TCTGATTAGTGAACCAAAGT+TGG | + | chr3.1:88331985-88332004 | None:intergenic | 35.0% | |
| TGTTGCAAACAACTTGGATT+GGG | - | chr3.1:88332124-88332143 | MS.gene014609:intron | 35.0% | |
| TTGGTTCACTAATCAGAGAA+TGG | - | chr3.1:88331988-88332007 | MS.gene014609:intron | 35.0% | |
| TTGTAGAGGAAAATTGGAGT+TGG | + | chr3.1:88331584-88331603 | None:intergenic | 35.0% | |
| ! | TCCAAACAATCCATTTTGCT+TGG | + | chr3.1:88332528-88332547 | None:intergenic | 35.0% |
| ! | TGCAAGTAAACCAGTCATTT+TGG | - | chr3.1:88333182-88333201 | MS.gene014609:CDS | 35.0% |
| !! | AAGAGGCTTGCTAATCTTTA+AGG | - | chr3.1:88332728-88332747 | MS.gene014609:CDS | 35.0% |
| !! | AGTTGTTATTTCTGGCTACT+CGG | + | chr3.1:88331911-88331930 | None:intergenic | 35.0% |
| !! | CTAGATATAGTGTCGGTTAA+GGG | + | chr3.1:88333146-88333165 | None:intergenic | 35.0% |
| !! | GAAGGTATCAATAAATGGGT+AGG | - | chr3.1:88332248-88332267 | MS.gene014609:intron | 35.0% |
| !! | GCATATTTTTGTGCCAAAGT+AGG | + | chr3.1:88331837-88331856 | None:intergenic | 35.0% |
| !! | GCCATGAAAGTTGTTATTTC+TGG | + | chr3.1:88331919-88331938 | None:intergenic | 35.0% |
| !! | TAGATATAGTGTCGGTTAAG+GGG | + | chr3.1:88333145-88333164 | None:intergenic | 35.0% |
| ACCACCACCAATTGATAGAA+GGG | + | chr3.1:88331808-88331827 | None:intergenic | 40.0% | |
| ACTCCACTAAAATACTACCC+AGG | - | chr3.1:88332095-88332114 | MS.gene014609:intron | 40.0% | |
| ACTCTTTGCCTGAACAGTTT+GGG | + | chr3.1:88331772-88331791 | None:intergenic | 40.0% | |
| AGAAGAAATGGTCACTGTGT+TGG | + | chr3.1:88331721-88331740 | None:intergenic | 40.0% | |
| AGAGTGACTCATTGTTAGTC+GGG | + | chr3.1:88333571-88333590 | None:intergenic | 40.0% | |
| AGCAAATGCACAGAACAAGT+GGG | + | chr3.1:88331682-88331701 | None:intergenic | 40.0% | |
| ATTGGAGTTGGAGAATCATG+AGG | + | chr3.1:88331572-88331591 | None:intergenic | 40.0% | |
| CACCCAAAAAAAGAGTCACA+TGG | - | chr3.1:88333533-88333552 | MS.gene014609:CDS | 40.0% | |
| CCTTAACCGACACTATATCT+AGG | - | chr3.1:88333144-88333163 | MS.gene014609:CDS | 40.0% | |
| CTATGGTTACAAGTGGAGAT+TGG | - | chr3.1:88332313-88332332 | MS.gene014609:intron | 40.0% | |
| CTCCACTTGTAACCATAGTA+GGG | + | chr3.1:88332311-88332330 | None:intergenic | 40.0% | |
| GGCACAAAAATATGCCAACA+TGG | - | chr3.1:88331842-88331861 | MS.gene014609:intron | 40.0% | |
| GGCTATTGGTATTCTGATAG+TGG | - | chr3.1:88331621-88331640 | MS.gene014609:intron | 40.0% | |
| TACCCTACTATGGTTACAAG+TGG | - | chr3.1:88332306-88332325 | MS.gene014609:intron | 40.0% | |
| TACTCTTTGCCTGAACAGTT+TGG | + | chr3.1:88331773-88331792 | None:intergenic | 40.0% | |
| TCTCCACTTGTAACCATAGT+AGG | + | chr3.1:88332312-88332331 | None:intergenic | 40.0% | |
| TGTTTGCAACATCTTGACCT+GGG | + | chr3.1:88332115-88332134 | None:intergenic | 40.0% | |
| TTCATAGGGACAGATTGGTA+TGG | - | chr3.1:88332461-88332480 | MS.gene014609:intron | 40.0% | |
| TTGTTTGCAACATCTTGACC+TGG | + | chr3.1:88332116-88332135 | None:intergenic | 40.0% | |
| ! | CAAGAGGAACGAATGCTTTT+TGG | + | chr3.1:88331538-88331557 | None:intergenic | 40.0% |
| ! | TTTTGCAGCTTCTCGAAACT+GGG | - | chr3.1:88333612-88333631 | MS.gene014609:CDS | 40.0% |
| ! | TTTTTGCAGCTTCTCGAAAC+TGG | - | chr3.1:88333611-88333630 | MS.gene014609:CDS | 40.0% |
| !! | AAGCCAGTTGGGTTTTTCAA+AGG | + | chr3.1:88332215-88332234 | None:intergenic | 40.0% |
| !! | AGTTGGGTTTTTCAAAGGAG+CGG | + | chr3.1:88332210-88332229 | None:intergenic | 40.0% |
| !! | CAAAAAGCATTCGTTCCTCT+TGG | - | chr3.1:88331536-88331555 | MS.gene014609:intron | 40.0% |
| !! | CCTAGATATAGTGTCGGTTA+AGG | + | chr3.1:88333147-88333166 | None:intergenic | 40.0% |
| !! | GCCAAGCAAAATGGATTGTT+TGG | - | chr3.1:88332524-88332543 | MS.gene014609:intron | 40.0% |
| !! | TGACCTGGGTAGTATTTTAG+TGG | + | chr3.1:88332101-88332120 | None:intergenic | 40.0% |
| !!! | CATGTGACTCTTTTTTTGGG+TGG | + | chr3.1:88333535-88333554 | None:intergenic | 40.0% |
| AACCTTCACCCAAACTGTTC+AGG | - | chr3.1:88331761-88331780 | MS.gene014609:intron | 45.0% | |
| ACCCTTCTATCAATTGGTGG+TGG | - | chr3.1:88331804-88331823 | MS.gene014609:intron | 45.0% | |
| ACTGCTTCATAGGGACAGAT+TGG | - | chr3.1:88332456-88332475 | MS.gene014609:intron | 45.0% | |
| CACCACCACCAATTGATAGA+AGG | + | chr3.1:88331809-88331828 | None:intergenic | 45.0% | |
| CAGCAAATGCACAGAACAAG+TGG | + | chr3.1:88331683-88331702 | None:intergenic | 45.0% | |
| CTGTTGTTATCTGCTGCAGT+AGG | - | chr3.1:88332056-88332075 | MS.gene014609:intron | 45.0% | |
| GAGTGACTCATTGTTAGTCG+GGG | + | chr3.1:88333570-88333589 | None:intergenic | 45.0% | |
| GATACTCCCAGTCAAGATCA+AGG | + | chr3.1:88331941-88331960 | None:intergenic | 45.0% | |
| TGCTGCGTTTGCAGAAGAAA+TGG | + | chr3.1:88331733-88331752 | None:intergenic | 45.0% | |
| TTGGAGAATCATGAGGAGAG+TGG | + | chr3.1:88331565-88331584 | None:intergenic | 45.0% | |
| TTGTTATCTGCTGCAGTAGG+TGG | - | chr3.1:88332059-88332078 | MS.gene014609:intron | 45.0% | |
| TTTGCAGCTTCTCGAAACTG+GGG | - | chr3.1:88333613-88333632 | MS.gene014609:CDS | 45.0% | |
| ! | ATGAATGATTTTCGGCCACC+AGG | + | chr3.1:88331876-88331895 | None:intergenic | 45.0% |
| ! | CAACACAACACTTTTGTCGG+TGG | + | chr3.1:88333082-88333101 | None:intergenic | 45.0% |
| ! | GCTCCTTTGAAAAACCCAAC+TGG | - | chr3.1:88332209-88332228 | MS.gene014609:intron | 45.0% |
| ! | TCATGGCCTTGATCTTGACT+GGG | - | chr3.1:88331932-88331951 | MS.gene014609:intron | 45.0% |
| ! | TTCATGGCCTTGATCTTGAC+TGG | - | chr3.1:88331931-88331950 | MS.gene014609:intron | 45.0% |
| !! | CTTCTATCAATTGGTGGTGG+TGG | - | chr3.1:88331807-88331826 | MS.gene014609:intron | 45.0% |
| !! | GTTGGGTTTTTCAAAGGAGC+GGG | + | chr3.1:88332209-88332228 | None:intergenic | 45.0% |
| ACTAGGGGCAGTGAAGTACA+AGG | - | chr3.1:88332379-88332398 | MS.gene014609:intron | 50.0% | |
| AGTAAAGCTACGCAGGGACT+AGG | - | chr3.1:88332362-88332381 | MS.gene014609:intron | 50.0% | |
| CTGCACTGAACAAGCCAGTT+GGG | + | chr3.1:88332226-88332245 | None:intergenic | 50.0% | |
| GACGCAGAAAAGGCCAACTT+TGG | - | chr3.1:88331969-88331988 | MS.gene014609:intron | 50.0% | |
| GACTCATTGTTAGTCGGGGA+TGG | + | chr3.1:88333566-88333585 | None:intergenic | 50.0% | |
| GAGATGAGAGATGAGTTGCC+TGG | - | chr3.1:88333116-88333135 | MS.gene014609:CDS | 50.0% | |
| GCACTTGGCTTACCCTACTA+TGG | - | chr3.1:88332296-88332315 | MS.gene014609:intron | 50.0% | |
| GCAGCAGATAACAACAGTGC+CGG | + | chr3.1:88332053-88332072 | None:intergenic | 50.0% | |
| GCCAGCCCTAGATATAGTGT+CGG | + | chr3.1:88333153-88333172 | None:intergenic | 50.0% | |
| GTAAAGCTACGCAGGGACTA+GGG | - | chr3.1:88332363-88332382 | MS.gene014609:intron | 50.0% | |
| TAAAGCTACGCAGGGACTAG+GGG | - | chr3.1:88332364-88332383 | MS.gene014609:intron | 50.0% | |
| TCCATCCTCTGACGCAGAAA+AGG | - | chr3.1:88331959-88331978 | MS.gene014609:intron | 50.0% | |
| TCTGCACTGAACAAGCCAGT+TGG | + | chr3.1:88332227-88332246 | None:intergenic | 50.0% | |
| TGAGGAGAGTGGAAACCAAG+AGG | + | chr3.1:88331554-88331573 | None:intergenic | 50.0% | |
| TGCCTGAACAGTTTGGGTGA+AGG | + | chr3.1:88331766-88331785 | None:intergenic | 50.0% | |
| TTGCAGCTTCTCGAAACTGG+GGG | - | chr3.1:88333614-88333633 | MS.gene014609:CDS | 50.0% | |
| ! | ACCGACACTATATCTAGGGC+TGG | - | chr3.1:88333149-88333168 | MS.gene014609:CDS | 50.0% |
| ! | ATATCTAGGGCTGGCACATG+AGG | - | chr3.1:88333158-88333177 | MS.gene014609:CDS | 50.0% |
| ! | GGCTTGTTCAGTGCAGATGA+AGG | - | chr3.1:88332230-88332249 | MS.gene014609:intron | 50.0% |
| ! | TCTGAAGCAGGTCGGTACAT+AGG | - | chr3.1:88332590-88332609 | MS.gene014609:CDS | 50.0% |
| !! | AACTGGGCTCTTTCTGAAGC+AGG | - | chr3.1:88332578-88332597 | MS.gene014609:CDS | 50.0% |
| !! | CTATCAATTGGTGGTGGTGG+TGG | - | chr3.1:88331810-88331829 | MS.gene014609:intron | 50.0% |
| !! | CTGTGTTGGTAGCAGTGTCA+AGG | + | chr3.1:88331707-88331726 | None:intergenic | 50.0% |
| AACATGGCTAGCACACCTGG+TGG | - | chr3.1:88331858-88331877 | MS.gene014609:intron | 55.0% | |
| ACCACAGAGGCTAGGAGTTC+CGG | - | chr3.1:88332023-88332042 | MS.gene014609:intron | 55.0% | |
| ACCAGGTGTGCTAGCCATGT+TGG | + | chr3.1:88331859-88331878 | None:intergenic | 55.0% | |
| ACTCCTAGCCTCTGTGGTCA+CGG | + | chr3.1:88332021-88332040 | None:intergenic | 55.0% | |
| GCGGGTGGTTGTGTTTGAGT+TGG | + | chr3.1:88332191-88332210 | None:intergenic | 55.0% | |
| TGCAGCTTCTCGAAACTGGG+GGG | - | chr3.1:88333615-88333634 | MS.gene014609:CDS | 55.0% | |
| ! | GCCTTTTCTGCGTCAGAGGA+TGG | + | chr3.1:88331963-88331982 | None:intergenic | 55.0% |
| !! | GGGCTCTTTCTGAAGCAGGT+CGG | - | chr3.1:88332582-88332601 | MS.gene014609:CDS | 55.0% |
| !! | GGGTTTTTCAAAGGAGCGGG+TGG | + | chr3.1:88332206-88332225 | None:intergenic | 55.0% |
| !! | TAACAACAGTGCCGGCTTGC+CGG | + | chr3.1:88332045-88332064 | None:intergenic | 55.0% |
| !! | TGGTGGTGGTGGTCCTACTT+TGG | - | chr3.1:88331821-88331840 | MS.gene014609:intron | 55.0% |
| !!! | GTTGGCCTTTTCTGCGTCAG+AGG | + | chr3.1:88331967-88331986 | None:intergenic | 55.0% |
| GCCAACATGGCTAGCACACC+TGG | - | chr3.1:88331855-88331874 | MS.gene014609:intron | 60.0% | |
| CTGCCGTGACCACAGAGGCT+AGG | - | chr3.1:88332015-88332034 | MS.gene014609:intron | 65.0% | |
| GAGAGCTGCCGTGACCACAG+AGG | - | chr3.1:88332010-88332029 | MS.gene014609:intron | 65.0% | |
| GCCGGAACTCCTAGCCTCTG+TGG | + | chr3.1:88332027-88332046 | None:intergenic | 65.0% | |
| GGCTAGGAGTTCCGGCAAGC+CGG | - | chr3.1:88332031-88332050 | MS.gene014609:intron | 65.0% | |
| !! | GTGTCGGTTAAGGGGCAGCC+AGG | + | chr3.1:88333137-88333156 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 88331525 | 88333642 | 88331525 | ID=MS.gene014609 |
| chr3.1 | mRNA | 88331525 | 88333642 | 88331525 | ID=MS.gene014609.t1;Parent=MS.gene014609 |
| chr3.1 | exon | 88332568 | 88333642 | 88332568 | ID=MS.gene014609.t1.exon1;Parent=MS.gene014609.t1 |
| chr3.1 | CDS | 88332568 | 88333642 | 88332568 | ID=cds.MS.gene014609.t1;Parent=MS.gene014609.t1 |
| chr3.1 | exon | 88331525 | 88331547 | 88331525 | ID=MS.gene014609.t1.exon2;Parent=MS.gene014609.t1 |
| chr3.1 | CDS | 88331525 | 88331547 | 88331525 | ID=cds.MS.gene014609.t1;Parent=MS.gene014609.t1 |
| Gene Sequence |
| Protein sequence |
