Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40256.t1 | KEH36081.1 | 96.9 | 360 | 11 | 0 | 1 | 360 | 1 | 360 | 2.80E-198 | 701 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40256.t1 | O81862 | 49.4 | 358 | 167 | 6 | 11 | 359 | 9 | 361 | 3.5e-88 | 326.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40256.t1 | A0A072V330 | 96.9 | 360 | 11 | 0 | 1 | 360 | 1 | 360 | 2.0e-198 | 701.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene53841 | MS.gene40256 | PPI |
| MS.gene40256 | MS.gene57747 | PPI |
| MS.gene40256 | MS.gene014610 | PPI |
| MS.gene40256 | MS.gene036626 | PPI |
| MS.gene40256 | MS.gene40705 | PPI |
| MS.gene40706 | MS.gene40256 | PPI |
| MS.gene40256 | MS.gene041428 | PPI |
| MS.gene40256 | MS.gene72023 | PPI |
| MS.gene40256 | MS.gene40707 | PPI |
| MS.gene40256 | MS.gene021944 | PPI |
| MS.gene72024 | MS.gene40256 | PPI |
| MS.gene58750 | MS.gene40256 | PPI |
| MS.gene40256 | MS.gene43244 | PPI |
| MS.gene40256 | MS.gene021954 | PPI |
| MS.gene40257 | MS.gene40256 | PPI |
| MS.gene40256 | MS.gene72022 | PPI |
| MS.gene44682 | MS.gene40256 | PPI |
| MS.gene055584 | MS.gene40256 | PPI |
| MS.gene014609 | MS.gene40256 | PPI |
| MS.gene014611 | MS.gene40256 | PPI |
| MS.gene40255 | MS.gene40256 | PPI |
| MS.gene44679 | MS.gene40256 | PPI |
| MS.gene40256 | MS.gene48549 | PPI |
| MS.gene40256 | MS.gene40257 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40256.t1 | MTR_3g110280 | 96.944 | 360 | 11 | 0 | 1 | 360 | 1 | 360 | 0.0 | 717 |
| MS.gene40256.t1 | MTR_3g110320 | 85.556 | 360 | 51 | 1 | 1 | 360 | 1 | 359 | 0.0 | 637 |
| MS.gene40256.t1 | MTR_3g110320 | 85.515 | 359 | 51 | 1 | 1 | 359 | 1 | 358 | 0.0 | 635 |
| MS.gene40256.t1 | MTR_4g116920 | 79.121 | 364 | 59 | 3 | 1 | 363 | 1 | 348 | 0.0 | 570 |
| MS.gene40256.t1 | MTR_1g013150 | 35.143 | 350 | 209 | 5 | 22 | 358 | 32 | 376 | 2.27e-65 | 212 |
| MS.gene40256.t1 | MTR_4g117040 | 36.461 | 373 | 208 | 10 | 9 | 363 | 6 | 367 | 1.00e-64 | 219 |
| MS.gene40256.t1 | MTR_4g117020 | 33.422 | 377 | 226 | 8 | 3 | 365 | 2 | 367 | 1.91e-61 | 210 |
| MS.gene40256.t1 | MTR_4g117000 | 35.061 | 328 | 197 | 6 | 30 | 346 | 35 | 357 | 2.03e-59 | 196 |
| MS.gene40256.t1 | MTR_4g117030 | 34.911 | 338 | 197 | 7 | 41 | 364 | 1 | 329 | 2.47e-58 | 201 |
| MS.gene40256.t1 | MTR_4g116990 | 36.337 | 344 | 198 | 7 | 30 | 357 | 37 | 375 | 9.15e-57 | 190 |
| MS.gene40256.t1 | MTR_4g117800 | 35.227 | 176 | 111 | 1 | 6 | 181 | 4 | 176 | 1.06e-25 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40256.t1 | AT4G19810 | 50.975 | 359 | 162 | 6 | 11 | 360 | 9 | 362 | 2.21e-116 | 343 |
| MS.gene40256.t1 | AT4G19810 | 50.975 | 359 | 162 | 6 | 11 | 360 | 9 | 362 | 2.21e-116 | 343 |
| MS.gene40256.t1 | AT4G19820 | 47.778 | 360 | 174 | 6 | 10 | 360 | 6 | 360 | 9.48e-105 | 313 |
| MS.gene40256.t1 | AT4G19800 | 44.928 | 345 | 175 | 6 | 25 | 360 | 2 | 340 | 8.45e-96 | 291 |
| MS.gene40256.t1 | AT4G19750 | 44.628 | 363 | 174 | 10 | 17 | 362 | 1 | 353 | 1.43e-93 | 284 |
| MS.gene40256.t1 | AT4G19760 | 44.293 | 368 | 174 | 10 | 17 | 360 | 1 | 361 | 7.16e-91 | 277 |
| MS.gene40256.t1 | AT4G19720 | 42.407 | 349 | 175 | 7 | 30 | 360 | 6 | 346 | 3.44e-84 | 260 |
| MS.gene40256.t1 | AT4G19730 | 42.899 | 338 | 165 | 9 | 17 | 332 | 1 | 332 | 1.51e-75 | 237 |
| MS.gene40256.t1 | AT4G19770 | 41.379 | 261 | 140 | 5 | 114 | 366 | 1 | 256 | 1.19e-57 | 188 |
| MS.gene40256.t1 | AT4G19740 | 37.173 | 191 | 106 | 5 | 137 | 317 | 24 | 210 | 8.63e-31 | 117 |
Find 87 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATGGAAGTTGTTATTTC+TGG | 0.149476 | 3.3:+91184604 | None:intergenic |
| TCATGAATTCTATGTTTATT+AGG | 0.202131 | 3.3:+91184179 | None:intergenic |
| TCTACAAACGCTGCCATTAA+AGG | 0.257757 | 3.3:-91184926 | MS.gene40256:CDS |
| GCACTTGGTTTACCCTTCTA+TGG | 0.267748 | 3.3:-91184224 | MS.gene40256:CDS |
| GCCAAGCAAAATGGTTTGTT+TGG | 0.270489 | 3.3:-91183996 | MS.gene40256:CDS |
| ATACCAATAGCCACCTTTAA+TGG | 0.272579 | 3.3:+91184913 | None:intergenic |
| CAACAAAGCAGTGTTTAATT+AGG | 0.279434 | 3.3:+91183903 | None:intergenic |
| CAGCGTTTGTAGAGGAAAAT+TGG | 0.280388 | 3.3:+91184936 | None:intergenic |
| CAGATGAAGGTATCACAAAA+TGG | 0.294502 | 3.3:-91184277 | MS.gene40256:CDS |
| ATAAAGCTACGCAGGGATTA+GGG | 0.294851 | 3.3:-91184157 | MS.gene40256:CDS |
| ACTCCATTTGTAACCATAGA+AGG | 0.300520 | 3.3:+91184211 | None:intergenic |
| GATAAAGCTACGCAGGGATT+AGG | 0.321139 | 3.3:-91184158 | MS.gene40256:CDS |
| TACCTTCATCTGCACTAAAT+TGG | 0.339776 | 3.3:+91184288 | None:intergenic |
| GTTGCTTATGCCAAGCAAAA+TGG | 0.349055 | 3.3:-91184005 | MS.gene40256:CDS |
| CGAATTACTCTTTGACTGAA+TGG | 0.366334 | 3.3:+91184748 | None:intergenic |
| GCCGCAGAGTCTAGGAGTTC+CGG | 0.370169 | 3.3:-91184497 | MS.gene40256:CDS |
| GATAACTATCTGAGATAAAA+AGG | 0.373862 | 3.3:+91184354 | None:intergenic |
| CTGCACTAAATTGGCCGGTT+GGG | 0.383400 | 3.3:+91184297 | None:intergenic |
| CTATGGTTACAAATGGAGTT+TGG | 0.386230 | 3.3:-91184207 | MS.gene40256:CDS |
| TAACAACAGTACGGGCTTGC+CGG | 0.396736 | 3.3:+91184478 | None:intergenic |
| GACGTTGAAAAGACCAACTT+TGG | 0.403887 | 3.3:-91184551 | MS.gene40256:CDS |
| CTGCTGTGGCCGCAGAGTCT+AGG | 0.417042 | 3.3:-91184505 | MS.gene40256:CDS |
| TTATCAATTGGTGGTGGTGG+TGG | 0.419706 | 3.3:-91184713 | MS.gene40256:CDS |
| TGTTGCAAACAACTTGGATT+GGG | 0.430200 | 3.3:-91184396 | MS.gene40256:CDS |
| TACCCTTCTATGGTTACAAA+TGG | 0.432906 | 3.3:-91184214 | MS.gene40256:CDS |
| CATTCAGTCAAAGAGTAATT+CGG | 0.447076 | 3.3:-91184747 | MS.gene40256:CDS |
| AAACAAGTGGGTGAAATAAG+AGG | 0.449767 | 3.3:+91184856 | None:intergenic |
| CTGCCATTAAAGGTGGCTAT+TGG | 0.451080 | 3.3:-91184916 | MS.gene40256:CDS |
| CTTGGTTGGTATTAGAATCA+AGG | 0.461412 | 3.3:+91184819 | None:intergenic |
| ACTGCTTCAAAGGGACAGAT+TGG | 0.463515 | 3.3:-91184064 | MS.gene40256:CDS |
| ATATTGAACAAGACAACAAT+TGG | 0.467582 | 3.3:-91183959 | MS.gene40256:CDS |
| ATGTTGCAAACAACTTGGAT+TGG | 0.470996 | 3.3:-91184397 | MS.gene40256:CDS |
| CTCAGAATTACTGCTTCAAA+GGG | 0.473408 | 3.3:-91184073 | MS.gene40256:CDS |
| TCAAGATGTTGCAAACAACT+TGG | 0.478830 | 3.3:-91184402 | MS.gene40256:CDS |
| GCGGGTGGTTGTGTTTGAGT+TGG | 0.482952 | 3.3:+91184332 | None:intergenic |
| ATCACAAAATGGGTAGGGTT+AGG | 0.483616 | 3.3:-91184266 | MS.gene40256:CDS |
| TCCATGGCCTTGATCTTGAC+TGG | 0.484655 | 3.3:-91184589 | MS.gene40256:CDS |
| TGTAATGAGTAAACCAAAGT+TGG | 0.491565 | 3.3:+91184538 | None:intergenic |
| TCTGCACTAAATTGGCCGGT+TGG | 0.503768 | 3.3:+91184296 | None:intergenic |
| AGATGAAGGTATCACAAAAT+GGG | 0.506219 | 3.3:-91184276 | MS.gene40256:CDS |
| TGGTGGTGGTGGTCCTACTT+TGG | 0.509475 | 3.3:-91184699 | MS.gene40256:CDS |
| TGACCTGGGTAGTACTTCAA+TGG | 0.515075 | 3.3:+91184422 | None:intergenic |
| GCTCAGAATTACTGCTTCAA+AGG | 0.515724 | 3.3:-91184074 | MS.gene40256:CDS |
| TTCATCTGCACTAAATTGGC+CGG | 0.515888 | 3.3:+91184292 | None:intergenic |
| TTGGAGAATCATGAGGAGAG+TGG | 0.515988 | 3.3:+91184961 | None:intergenic |
| ACTGGCTTGGCTAGCCATGT+TGG | 0.520824 | 3.3:+91184664 | None:intergenic |
| AATTGGACTCTTTCTCAAGC+AGG | 0.528807 | 3.3:-91183942 | MS.gene40256:CDS |
| AGCTGCGTGTGTAGAAGAAA+TGG | 0.529170 | 3.3:+91184793 | None:intergenic |
| TTGTAGAGGAAAATTGGAGT+TGG | 0.530932 | 3.3:+91184942 | None:intergenic |
| TTGCTTGGCATAAGCAACCT+TGG | 0.538135 | 3.3:+91184010 | None:intergenic |
| TTGTTTGCAACATCTTGACC+TGG | 0.548598 | 3.3:+91184407 | None:intergenic |
| TGCAGCAGATAACAACAGTA+CGG | 0.550766 | 3.3:+91184469 | None:intergenic |
| AATTCATGATAAAGCTACGC+AGG | 0.550930 | 3.3:-91184165 | MS.gene40256:CDS |
| TGACTGAATGGTTTCAGTGA+AGG | 0.552685 | 3.3:+91184760 | None:intergenic |
| AGTTGTTATTTCTGGCTAGT+CGG | 0.552779 | 3.3:+91184612 | None:intergenic |
| GAAGGTATCACAAAATGGGT+AGG | 0.554568 | 3.3:-91184272 | MS.gene40256:CDS |
| GCCAGTCAAGATCAAGGCCA+TGG | 0.557488 | 3.3:+91184588 | None:intergenic |
| TTGTTATCTGCTGCAGTGGG+TGG | 0.559981 | 3.3:-91184461 | MS.gene40256:CDS |
| GCAGTAATTCTGAGCGTATG+TGG | 0.561135 | 3.3:+91184082 | None:intergenic |
| AACAAGTGGGTGAAATAAGA+GGG | 0.575691 | 3.3:+91184857 | None:intergenic |
| CTGCAAATGCACAAAACAAG+TGG | 0.579073 | 3.3:+91184843 | None:intergenic |
| GGCCAATTTAGTGCAGATGA+AGG | 0.583988 | 3.3:-91184290 | MS.gene40256:CDS |
| AAGGTATCACAAAATGGGTA+GGG | 0.585197 | 3.3:-91184271 | MS.gene40256:CDS |
| CTCCATTTGTAACCATAGAA+GGG | 0.586080 | 3.3:+91184212 | None:intergenic |
| CACTCAGAGTATATCTGCCA+AGG | 0.587655 | 3.3:-91184027 | MS.gene40256:CDS |
| GATACTGCCAGTCAAGATCA+AGG | 0.589592 | 3.3:+91184582 | None:intergenic |
| GCAGCAGATAACAACAGTAC+GGG | 0.596002 | 3.3:+91184470 | None:intergenic |
| TACAGAGTGGAGAGCTGCTG+TGG | 0.596100 | 3.3:-91184519 | MS.gene40256:CDS |
| CTGTTGTTATCTGCTGCAGT+GGG | 0.604955 | 3.3:-91184464 | MS.gene40256:CDS |
| TGAGGAGAGTGGAAATCAAG+AGG | 0.606133 | 3.3:+91184972 | None:intergenic |
| TTCAAAGGGACAGATTGGTA+TGG | 0.606399 | 3.3:-91184059 | MS.gene40256:CDS |
| TTTAATGGCAGCGTTTGTAG+AGG | 0.608544 | 3.3:+91184928 | None:intergenic |
| ATTCATGATAAAGCTACGCA+GGG | 0.610111 | 3.3:-91184164 | MS.gene40256:CDS |
| ACTGTTGTTATCTGCTGCAG+TGG | 0.615630 | 3.3:-91184465 | MS.gene40256:CDS |
| ATTAGGGGCAGTGAAGTACA+AGG | 0.624997 | 3.3:-91184141 | MS.gene40256:CDS |
| GCCAGAAATAACAACTTCCA+TGG | 0.628402 | 3.3:-91184605 | MS.gene40256:CDS |
| ATTGGAGTTGGAGAATCATG+AGG | 0.636575 | 3.3:+91184954 | None:intergenic |
| TGCAAATGCACAAAACAAGT+GGG | 0.643130 | 3.3:+91184844 | None:intergenic |
| GATCAATCTCAGAAACTGCA+AGG | 0.648716 | 3.3:+91184879 | None:intergenic |
| TAAAGCTACGCAGGGATTAG+GGG | 0.652308 | 3.3:-91184156 | MS.gene40256:CDS |
| TGTTTGCAACATCTTGACCT+GGG | 0.652675 | 3.3:+91184408 | None:intergenic |
| ACAAACGCTGCCATTAAAGG+TGG | 0.659948 | 3.3:-91184923 | MS.gene40256:CDS |
| AGAAGAAATGGTGACTTGGT+TGG | 0.669123 | 3.3:+91184805 | None:intergenic |
| GTGTAGAAGAAATGGTGACT+TGG | 0.674829 | 3.3:+91184801 | None:intergenic |
| TTGGTTTACTCATTACAGAG+TGG | 0.678345 | 3.3:-91184532 | MS.gene40256:CDS |
| ACTCCATTGAAGTACTACCC+AGG | 0.697331 | 3.3:-91184425 | MS.gene40256:CDS |
| GCCGGAACTCCTAGACTCTG+CGG | 0.700936 | 3.3:+91184496 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAGGATATAAAAAATGAT+GGG | - | chr3.3:91184791-91184810 | MS.gene40256:CDS | 20.0% |
| !! | TACAAGGATATAAAAAATGA+TGG | - | chr3.3:91184790-91184809 | MS.gene40256:CDS | 20.0% |
| !! | TCATGAATTCTATGTTTATT+AGG | + | chr3.3:91184739-91184758 | None:intergenic | 20.0% |
| ! | ATATTGAACAAGACAACAAT+TGG | - | chr3.3:91184956-91184975 | MS.gene40256:CDS | 25.0% |
| ! | CAAGGATATAAAAAATGATG+GGG | - | chr3.3:91184792-91184811 | MS.gene40256:CDS | 25.0% |
| !! | AAGAATCTATGAACGATTTT+CGG | + | chr3.3:91184279-91184298 | None:intergenic | 25.0% |
| !! | GATAACTATCTGAGATAAAA+AGG | + | chr3.3:91184564-91184583 | None:intergenic | 25.0% |
| CATTCAGTCAAAGAGTAATT+CGG | - | chr3.3:91184168-91184187 | MS.gene40256:CDS | 30.0% | |
| TGTAATGAGTAAACCAAAGT+TGG | + | chr3.3:91184380-91184399 | None:intergenic | 30.0% | |
| ! | AAAACGCTTTTATCAATTGG+TGG | - | chr3.3:91184193-91184212 | MS.gene40256:CDS | 30.0% |
| ! | GTGAAAACGCTTTTATCAAT+TGG | - | chr3.3:91184190-91184209 | MS.gene40256:CDS | 30.0% |
| ! | GTTTGTTTGGATATTTTGCT+TGG | - | chr3.3:91184932-91184951 | MS.gene40256:CDS | 30.0% |
| !! | AGATGAAGGTATCACAAAAT+GGG | - | chr3.3:91184639-91184658 | MS.gene40256:CDS | 30.0% |
| AAACAAGTGGGTGAAATAAG+AGG | + | chr3.3:91184062-91184081 | None:intergenic | 35.0% | |
| AACAAGTGGGTGAAATAAGA+GGG | + | chr3.3:91184061-91184080 | None:intergenic | 35.0% | |
| AATTCATGATAAAGCTACGC+AGG | - | chr3.3:91184750-91184769 | MS.gene40256:CDS | 35.0% | |
| ACTCCATTTGTAACCATAGA+AGG | + | chr3.3:91184707-91184726 | None:intergenic | 35.0% | |
| ATACCAATAGCCACCTTTAA+TGG | + | chr3.3:91184005-91184024 | None:intergenic | 35.0% | |
| ATGTTGCAAACAACTTGGAT+TGG | - | chr3.3:91184518-91184537 | MS.gene40256:CDS | 35.0% | |
| ATTCATGATAAAGCTACGCA+GGG | - | chr3.3:91184751-91184770 | MS.gene40256:CDS | 35.0% | |
| CGAATTACTCTTTGACTGAA+TGG | + | chr3.3:91184170-91184189 | None:intergenic | 35.0% | |
| CTATGGTTACAAATGGAGTT+TGG | - | chr3.3:91184708-91184727 | MS.gene40256:CDS | 35.0% | |
| CTCAGAATTACTGCTTCAAA+GGG | - | chr3.3:91184842-91184861 | MS.gene40256:CDS | 35.0% | |
| CTCCATTTGTAACCATAGAA+GGG | + | chr3.3:91184706-91184725 | None:intergenic | 35.0% | |
| TACCCTTCTATGGTTACAAA+TGG | - | chr3.3:91184701-91184720 | MS.gene40256:CDS | 35.0% | |
| TACCTTCATCTGCACTAAAT+TGG | + | chr3.3:91184630-91184649 | None:intergenic | 35.0% | |
| TCAAGATGTTGCAAACAACT+TGG | - | chr3.3:91184513-91184532 | MS.gene40256:CDS | 35.0% | |
| TGCAAATGCACAAAACAAGT+GGG | + | chr3.3:91184074-91184093 | None:intergenic | 35.0% | |
| TGTTGCAAACAACTTGGATT+GGG | - | chr3.3:91184519-91184538 | MS.gene40256:CDS | 35.0% | |
| TTGGTTTACTCATTACAGAG+TGG | - | chr3.3:91184383-91184402 | MS.gene40256:CDS | 35.0% | |
| TTGTAGAGGAAAATTGGAGT+TGG | + | chr3.3:91183976-91183995 | None:intergenic | 35.0% | |
| ! | AAGGTATCACAAAATGGGTA+GGG | - | chr3.3:91184644-91184663 | MS.gene40256:CDS | 35.0% |
| ! | CTTGGTTGGTATTAGAATCA+AGG | + | chr3.3:91184099-91184118 | None:intergenic | 35.0% |
| ! | GCAAATTTTTGTGCCAAAGT+AGG | + | chr3.3:91184232-91184251 | None:intergenic | 35.0% |
| ! | TCCAAACAAACCATTTTGCT+TGG | + | chr3.3:91184923-91184942 | None:intergenic | 35.0% |
| !! | AGTTGTTATTTCTGGCTAGT+CGG | + | chr3.3:91184306-91184325 | None:intergenic | 35.0% |
| !! | CAGATGAAGGTATCACAAAA+TGG | - | chr3.3:91184638-91184657 | MS.gene40256:CDS | 35.0% |
| AATTGGACTCTTTCTCAAGC+AGG | - | chr3.3:91184973-91184992 | MS.gene40256:CDS | 40.0% | |
| ATAAAGCTACGCAGGGATTA+GGG | - | chr3.3:91184758-91184777 | MS.gene40256:CDS | 40.0% | |
| ATCACAAAATGGGTAGGGTT+AGG | - | chr3.3:91184649-91184668 | MS.gene40256:CDS | 40.0% | |
| ATTGGAGTTGGAGAATCATG+AGG | + | chr3.3:91183964-91183983 | None:intergenic | 40.0% | |
| CAGCGTTTGTAGAGGAAAAT+TGG | + | chr3.3:91183982-91184001 | None:intergenic | 40.0% | |
| CCAAAAAGCAAACTTGCACT+TGG | - | chr3.3:91184676-91184695 | MS.gene40256:CDS | 40.0% | |
| CTGCAAATGCACAAAACAAG+TGG | + | chr3.3:91184075-91184094 | None:intergenic | 40.0% | |
| GACGTTGAAAAGACCAACTT+TGG | - | chr3.3:91184364-91184383 | MS.gene40256:CDS | 40.0% | |
| GATCAATCTCAGAAACTGCA+AGG | + | chr3.3:91184039-91184058 | None:intergenic | 40.0% | |
| GCCAGAAATAACAACTTCCA+TGG | - | chr3.3:91184310-91184329 | MS.gene40256:CDS | 40.0% | |
| GCTCAGAATTACTGCTTCAA+AGG | - | chr3.3:91184841-91184860 | MS.gene40256:CDS | 40.0% | |
| GGCACAAAAATTTGCCAACA+TGG | - | chr3.3:91184237-91184256 | MS.gene40256:CDS | 40.0% | |
| GTGTAGAAGAAATGGTGACT+TGG | + | chr3.3:91184117-91184136 | None:intergenic | 40.0% | |
| GTTGCTTATGCCAAGCAAAA+TGG | - | chr3.3:91184910-91184929 | MS.gene40256:CDS | 40.0% | |
| TCTACAAACGCTGCCATTAA+AGG | - | chr3.3:91183989-91184008 | MS.gene40256:CDS | 40.0% | |
| TGACTGAATGGTTTCAGTGA+AGG | + | chr3.3:91184158-91184177 | None:intergenic | 40.0% | |
| TGCAGCAGATAACAACAGTA+CGG | + | chr3.3:91184449-91184468 | None:intergenic | 40.0% | |
| TGTTTGCAACATCTTGACCT+GGG | + | chr3.3:91184510-91184529 | None:intergenic | 40.0% | |
| TTCAAAGGGACAGATTGGTA+TGG | - | chr3.3:91184856-91184875 | MS.gene40256:CDS | 40.0% | |
| TTCATCTGCACTAAATTGGC+CGG | + | chr3.3:91184626-91184645 | None:intergenic | 40.0% | |
| TTGTTTGCAACATCTTGACC+TGG | + | chr3.3:91184511-91184530 | None:intergenic | 40.0% | |
| TTTAATGGCAGCGTTTGTAG+AGG | + | chr3.3:91183990-91184009 | None:intergenic | 40.0% | |
| ! | ACGCTTTTATCAATTGGTGG+TGG | - | chr3.3:91184196-91184215 | MS.gene40256:CDS | 40.0% |
| ! | CAAGAGGAACGAATGCTTTT+TGG | + | chr3.3:91183930-91183949 | None:intergenic | 40.0% |
| ! | TATGAACGATTTTCGGCTAC+TGG | + | chr3.3:91184272-91184291 | None:intergenic | 40.0% |
| !! | AGAAGAAATGGTGACTTGGT+TGG | + | chr3.3:91184113-91184132 | None:intergenic | 40.0% |
| !! | CCAAGTGCAAGTTTGCTTTT+TGG | + | chr3.3:91184679-91184698 | None:intergenic | 40.0% |
| !! | GAAGGTATCACAAAATGGGT+AGG | - | chr3.3:91184643-91184662 | MS.gene40256:CDS | 40.0% |
| !! | GCCAAGCAAAATGGTTTGTT+TGG | - | chr3.3:91184919-91184938 | MS.gene40256:CDS | 40.0% |
| !! | GCCATGGAAGTTGTTATTTC+TGG | + | chr3.3:91184314-91184333 | None:intergenic | 40.0% |
| !!! | CTTTTATCAATTGGTGGTGG+TGG | - | chr3.3:91184199-91184218 | MS.gene40256:CDS | 40.0% |
| ACAAACGCTGCCATTAAAGG+TGG | - | chr3.3:91183992-91184011 | MS.gene40256:CDS | 45.0% | |
| ACTGCTTCAAAGGGACAGAT+TGG | - | chr3.3:91184851-91184870 | MS.gene40256:CDS | 45.0% | |
| ACTGTTGTTATCTGCTGCAG+TGG | - | chr3.3:91184450-91184469 | MS.gene40256:CDS | 45.0% | |
| AGCTGCGTGTGTAGAAGAAA+TGG | + | chr3.3:91184125-91184144 | None:intergenic | 45.0% | |
| ATTAGGGGCAGTGAAGTACA+AGG | - | chr3.3:91184774-91184793 | MS.gene40256:CDS | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | - | chr3.3:91184888-91184907 | MS.gene40256:CDS | 45.0% | |
| CTGCCATTAAAGGTGGCTAT+TGG | - | chr3.3:91183999-91184018 | MS.gene40256:CDS | 45.0% | |
| CTGTTGTTATCTGCTGCAGT+GGG | - | chr3.3:91184451-91184470 | MS.gene40256:CDS | 45.0% | |
| GATAAAGCTACGCAGGGATT+AGG | - | chr3.3:91184757-91184776 | MS.gene40256:CDS | 45.0% | |
| GATACTGCCAGTCAAGATCA+AGG | + | chr3.3:91184336-91184355 | None:intergenic | 45.0% | |
| GCACTTGGTTTACCCTTCTA+TGG | - | chr3.3:91184691-91184710 | MS.gene40256:CDS | 45.0% | |
| GCAGCAGATAACAACAGTAC+GGG | + | chr3.3:91184448-91184467 | None:intergenic | 45.0% | |
| GCAGTAATTCTGAGCGTATG+TGG | + | chr3.3:91184836-91184855 | None:intergenic | 45.0% | |
| GGCCAATTTAGTGCAGATGA+AGG | - | chr3.3:91184625-91184644 | MS.gene40256:CDS | 45.0% | |
| TAAAGCTACGCAGGGATTAG+GGG | - | chr3.3:91184759-91184778 | MS.gene40256:CDS | 45.0% | |
| TGACCTGGGTAGTACTTCAA+TGG | + | chr3.3:91184496-91184515 | None:intergenic | 45.0% | |
| TGAGGAGAGTGGAAATCAAG+AGG | + | chr3.3:91183946-91183965 | None:intergenic | 45.0% | |
| TTGCTTGGCATAAGCAACCT+TGG | + | chr3.3:91184908-91184927 | None:intergenic | 45.0% | |
| TTGGAGAATCATGAGGAGAG+TGG | + | chr3.3:91183957-91183976 | None:intergenic | 45.0% | |
| ! | ACTCCATTGAAGTACTACCC+AGG | - | chr3.3:91184490-91184509 | MS.gene40256:CDS | 45.0% |
| ! | GCTCCTTTGAAAAACCCAAC+CGG | - | chr3.3:91184604-91184623 | MS.gene40256:CDS | 45.0% |
| ! | GTCTTTTCAACGTCTGAGGA+TGG | + | chr3.3:91184358-91184377 | None:intergenic | 45.0% |
| !! | GGTTGGGTTTTTCAAAGGAG+CGG | + | chr3.3:91184605-91184624 | None:intergenic | 45.0% |
| !! | GTTGGGTTTTTCAAAGGAGC+GGG | + | chr3.3:91184604-91184623 | None:intergenic | 45.0% |
| !! | TTATCAATTGGTGGTGGTGG+TGG | - | chr3.3:91184202-91184221 | MS.gene40256:CDS | 45.0% |
| !!! | GTTGGTCTTTTCAACGTCTG+AGG | + | chr3.3:91184362-91184381 | None:intergenic | 45.0% |
| CTGCACTAAATTGGCCGGTT+GGG | + | chr3.3:91184621-91184640 | None:intergenic | 50.0% | |
| TAACAACAGTACGGGCTTGC+CGG | + | chr3.3:91184440-91184459 | None:intergenic | 50.0% | |
| TCTGCACTAAATTGGCCGGT+TGG | + | chr3.3:91184622-91184641 | None:intergenic | 50.0% | |
| TTGTTATCTGCTGCAGTGGG+TGG | - | chr3.3:91184454-91184473 | MS.gene40256:CDS | 50.0% | |
| ! | TCCATGGCCTTGATCTTGAC+TGG | - | chr3.3:91184326-91184345 | MS.gene40256:CDS | 50.0% |
| !! | ACGATTTTCGGCTACTGGCT+TGG | + | chr3.3:91184267-91184286 | None:intergenic | 50.0% |
| !! | TGGCCGGTTGGGTTTTTCAA+AGG | + | chr3.3:91184610-91184629 | None:intergenic | 50.0% |
| GCCAGTCAAGATCAAGGCCA+TGG | + | chr3.3:91184330-91184349 | None:intergenic | 55.0% | |
| GCGGGTGGTTGTGTTTGAGT+TGG | + | chr3.3:91184586-91184605 | None:intergenic | 55.0% | |
| TACAGAGTGGAGAGCTGCTG+TGG | - | chr3.3:91184396-91184415 | MS.gene40256:CDS | 55.0% | |
| !! | ACTGGCTTGGCTAGCCATGT+TGG | + | chr3.3:91184254-91184273 | None:intergenic | 55.0% |
| !! | GGGTTTTTCAAAGGAGCGGG+TGG | + | chr3.3:91184601-91184620 | None:intergenic | 55.0% |
| !! | TCAATTGGTGGTGGTGGTGG+TGG | - | chr3.3:91184205-91184224 | MS.gene40256:CDS | 55.0% |
| !! | TGGTGGTGGTGGTCCTACTT+TGG | - | chr3.3:91184216-91184235 | MS.gene40256:CDS | 55.0% |
| GCCGCAGAGTCTAGGAGTTC+CGG | - | chr3.3:91184418-91184437 | MS.gene40256:CDS | 60.0% | |
| GCCGGAACTCCTAGACTCTG+CGG | + | chr3.3:91184422-91184441 | None:intergenic | 60.0% | |
| CTGCTGTGGCCGCAGAGTCT+AGG | - | chr3.3:91184410-91184429 | MS.gene40256:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 91183917 | 91185020 | 91183917 | ID=MS.gene40256 |
| chr3.3 | mRNA | 91183917 | 91185020 | 91183917 | ID=MS.gene40256.t1;Parent=MS.gene40256 |
| chr3.3 | exon | 91183917 | 91185020 | 91183917 | ID=MS.gene40256.t1.exon1;Parent=MS.gene40256.t1 |
| chr3.3 | CDS | 91183917 | 91185020 | 91183917 | ID=cds.MS.gene40256.t1;Parent=MS.gene40256.t1 |
| Gene Sequence |
| Protein sequence |
