Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40707.t1 | PNY09053.1 | 92.7 | 358 | 26 | 0 | 1 | 358 | 1 | 358 | 6.30E-190 | 673.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40707.t1 | O81862 | 51.1 | 364 | 165 | 6 | 11 | 365 | 9 | 368 | 1.2e-91 | 338.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40707.t1 | A0A2K3P1D5 | 92.7 | 358 | 26 | 0 | 1 | 358 | 1 | 358 | 4.5e-190 | 673.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055584 | MS.gene40707 | 0.978773 | 1.56E-146 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014610 | MS.gene40707 | PPI |
| MS.gene48549 | MS.gene40707 | PPI |
| MS.gene40707 | MS.gene57747 | PPI |
| MS.gene40707 | MS.gene40705 | PPI |
| MS.gene43244 | MS.gene40707 | PPI |
| MS.gene40706 | MS.gene40707 | PPI |
| MS.gene036626 | MS.gene40707 | PPI |
| MS.gene72024 | MS.gene40707 | PPI |
| MS.gene40256 | MS.gene40707 | PPI |
| MS.gene58750 | MS.gene40707 | PPI |
| MS.gene021944 | MS.gene40707 | PPI |
| MS.gene041428 | MS.gene40707 | PPI |
| MS.gene40257 | MS.gene40707 | PPI |
| MS.gene44682 | MS.gene40707 | PPI |
| MS.gene40707 | MS.gene021954 | PPI |
| MS.gene055584 | MS.gene40707 | PPI |
| MS.gene014609 | MS.gene40707 | PPI |
| MS.gene014611 | MS.gene40707 | PPI |
| MS.gene40255 | MS.gene40707 | PPI |
| MS.gene44679 | MS.gene40707 | PPI |
| MS.gene72023 | MS.gene40707 | PPI |
| MS.gene53841 | MS.gene40707 | PPI |
| MS.gene72022 | MS.gene40707 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40707.t1 | MTR_3g110320 | 83.242 | 364 | 61 | 0 | 1 | 364 | 1 | 364 | 0.0 | 631 |
| MS.gene40707.t1 | MTR_3g110280 | 87.187 | 359 | 45 | 1 | 1 | 358 | 1 | 359 | 0.0 | 629 |
| MS.gene40707.t1 | MTR_3g110320 | 83.565 | 359 | 59 | 0 | 1 | 359 | 1 | 359 | 0.0 | 626 |
| MS.gene40707.t1 | MTR_4g116920 | 85.000 | 360 | 38 | 3 | 1 | 359 | 1 | 345 | 0.0 | 598 |
| MS.gene40707.t1 | MTR_1g013150 | 35.112 | 356 | 214 | 5 | 22 | 364 | 32 | 383 | 6.03e-65 | 211 |
| MS.gene40707.t1 | MTR_4g117040 | 38.040 | 347 | 188 | 9 | 30 | 359 | 28 | 364 | 2.28e-62 | 213 |
| MS.gene40707.t1 | MTR_4g117000 | 34.870 | 347 | 210 | 7 | 29 | 363 | 34 | 376 | 1.44e-60 | 199 |
| MS.gene40707.t1 | MTR_4g117020 | 33.693 | 371 | 222 | 9 | 3 | 359 | 2 | 362 | 1.01e-58 | 203 |
| MS.gene40707.t1 | MTR_4g116990 | 36.517 | 356 | 196 | 8 | 29 | 363 | 36 | 382 | 1.12e-58 | 195 |
| MS.gene40707.t1 | MTR_4g117030 | 35.435 | 333 | 193 | 8 | 41 | 359 | 1 | 325 | 1.39e-56 | 196 |
| MS.gene40707.t1 | MTR_4g117800 | 34.286 | 175 | 113 | 1 | 6 | 180 | 4 | 176 | 6.18e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40707.t1 | AT4G19810 | 52.316 | 367 | 156 | 7 | 11 | 365 | 9 | 368 | 4.18e-120 | 352 |
| MS.gene40707.t1 | AT4G19810 | 52.316 | 367 | 156 | 7 | 11 | 365 | 9 | 368 | 4.18e-120 | 352 |
| MS.gene40707.t1 | AT4G19820 | 47.671 | 365 | 178 | 6 | 10 | 365 | 6 | 366 | 6.74e-105 | 313 |
| MS.gene40707.t1 | AT4G19760 | 45.283 | 371 | 173 | 10 | 17 | 363 | 1 | 365 | 5.94e-95 | 288 |
| MS.gene40707.t1 | AT4G19800 | 45.588 | 340 | 171 | 6 | 30 | 360 | 7 | 341 | 1.95e-93 | 285 |
| MS.gene40707.t1 | AT4G19750 | 45.000 | 360 | 178 | 9 | 17 | 362 | 1 | 354 | 2.15e-93 | 283 |
| MS.gene40707.t1 | AT4G19720 | 44.068 | 354 | 173 | 8 | 30 | 365 | 6 | 352 | 1.64e-88 | 271 |
| MS.gene40707.t1 | AT4G19730 | 42.308 | 338 | 166 | 9 | 17 | 331 | 1 | 332 | 4.63e-71 | 225 |
| MS.gene40707.t1 | AT4G19770 | 41.406 | 256 | 140 | 4 | 113 | 360 | 1 | 254 | 8.19e-57 | 186 |
| MS.gene40707.t1 | AT4G19740 | 36.126 | 191 | 108 | 5 | 136 | 316 | 24 | 210 | 5.04e-28 | 109 |
Find 89 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATTGAAGTTGTTATTTC+TGG | 0.094267 | 3.2:+88443600 | None:intergenic |
| CCCCACCACCAATTGATAAA+AGG | 0.195506 | 3.2:+88443710 | None:intergenic |
| GTTACTAATTATTGCTTCAT+AGG | 0.237729 | 3.2:-88443070 | MS.gene40707:CDS |
| TCTGCAAAAGCTGAAATTAA+AGG | 0.269287 | 3.2:-88443919 | MS.gene40707:CDS |
| GCCAAGCAAAATGGATTGTT+TGG | 0.270489 | 3.2:-88442992 | MS.gene40707:CDS |
| GTTGCTTATGCCAAGCAAAA+TGG | 0.325981 | 3.2:-88443001 | MS.gene40707:CDS |
| ATAAAGCTACACAGGGGCTT+GGG | 0.335713 | 3.2:-88443153 | MS.gene40707:CDS |
| ACCCAAGAGTCTAGCAGTTC+TGG | 0.345855 | 3.2:-88443493 | MS.gene40707:CDS |
| TGCCAGAACTGCTAGACTCT+TGG | 0.370329 | 3.2:+88443491 | None:intergenic |
| ATATTGAACAAGACAGCAAC+TGG | 0.377045 | 3.2:-88442955 | MS.gene40707:CDS |
| ACAAGGATATAATAAATGTT+GGG | 0.382597 | 3.2:-88443120 | MS.gene40707:CDS |
| ACTGGCTTGGCTAGCCATAT+TGG | 0.395681 | 3.2:+88443660 | None:intergenic |
| TTCCTTCATCTGCACTGAAC+TGG | 0.404343 | 3.2:+88443284 | None:intergenic |
| GATAAAGCTACACAGGGGCT+TGG | 0.405269 | 3.2:-88443154 | MS.gene40707:CDS |
| CTGCACTGAACTGGCCTGTC+GGG | 0.414245 | 3.2:+88443293 | None:intergenic |
| CAGATGAAGGAATCACAAAA+TGG | 0.416610 | 3.2:-88443273 | MS.gene40707:CDS |
| TCAATGGTCTTGATCTTGAC+TGG | 0.423081 | 3.2:-88443585 | MS.gene40707:CDS |
| TGAACTACTCTTTGCCTGAA+TGG | 0.425900 | 3.2:+88443741 | None:intergenic |
| CCCACCACCAATTGATAAAA+GGG | 0.428641 | 3.2:+88443711 | None:intergenic |
| ATTGCTTCATAGGGACAGAT+TGG | 0.433223 | 3.2:-88443060 | MS.gene40707:CDS |
| GAAGGAATCACAAAATGGAT+TGG | 0.434027 | 3.2:-88443268 | MS.gene40707:CDS |
| GCCAGAACTGCTAGACTCTT+GGG | 0.439126 | 3.2:+88443492 | None:intergenic |
| TATTGCAAGCAACTTGGATT+GGG | 0.441089 | 3.2:-88443392 | MS.gene40707:CDS |
| GACCTGGGTAGTATTCCAAT+GGG | 0.443214 | 3.2:+88443419 | None:intergenic |
| ATCACAAAATGGATTGGGTT+AGG | 0.444351 | 3.2:-88443262 | MS.gene40707:CDS |
| TTACTAATTATTGCTTCATA+GGG | 0.446458 | 3.2:-88443069 | MS.gene40707:CDS |
| CTGAAATTAAAGGTGGCTAT+TGG | 0.446672 | 3.2:-88443909 | MS.gene40707:CDS |
| GATTGTTTGGATACTTTGCT+TGG | 0.448742 | 3.2:-88442979 | MS.gene40707:CDS |
| TATAATAAATGTTGGGGCGC+AGG | 0.450194 | 3.2:-88443113 | MS.gene40707:CDS |
| TACAAGGATATAATAAATGT+TGG | 0.455760 | 3.2:-88443121 | MS.gene40707:CDS |
| GAACAAGTGGGTGAAATAAG+AGG | 0.458120 | 3.2:+88443849 | None:intergenic |
| GATAACTATCTGAGGTGAAA+AGG | 0.460405 | 3.2:+88443350 | None:intergenic |
| CTTGGTTGGTATTAGAATCA+AGG | 0.461412 | 3.2:+88443812 | None:intergenic |
| AACCTTCACTGAAACCATTC+AGG | 0.468884 | 3.2:-88443755 | MS.gene40707:CDS |
| AGCTGCGTTTGCAGAAGAAA+TGG | 0.471700 | 3.2:+88443786 | None:intergenic |
| AAGGAATCACAAAATGGATT+GGG | 0.476468 | 3.2:-88443267 | MS.gene40707:CDS |
| GCCTTGTCTGTGTCTGAGGA+TGG | 0.481902 | 3.2:+88443556 | None:intergenic |
| ATATTGCAAGCAACTTGGAT+TGG | 0.487324 | 3.2:-88443393 | MS.gene40707:CDS |
| GGCTATTGGTATTCTGATAG+TGG | 0.488891 | 3.2:-88443895 | MS.gene40707:CDS |
| AACTGGGCTCTTTCTCAAGC+AGG | 0.494078 | 3.2:-88442938 | MS.gene40707:intron |
| GCATTGGGTGTACCTTTCTA+CGG | 0.499133 | 3.2:-88443220 | MS.gene40707:CDS |
| TCTGCACTGAACTGGCCTGT+CGG | 0.505960 | 3.2:+88443292 | None:intergenic |
| TCAGGATATTGCAAGCAACT+TGG | 0.506566 | 3.2:-88443398 | MS.gene40707:CDS |
| TGCCTGAATGGTTTCAGTGA+AGG | 0.506803 | 3.2:+88443753 | None:intergenic |
| GTCTAGCAGTTCTGGCAAGC+CGG | 0.512533 | 3.2:-88443485 | MS.gene40707:CDS |
| CAATGGTCTTGATCTTGACT+GGG | 0.517624 | 3.2:-88443584 | MS.gene40707:CDS |
| AGTTGTTATTTCTGGCAAGT+TGG | 0.519658 | 3.2:+88443608 | None:intergenic |
| TTGCAGAAGAGAATTGGAGT+TGG | 0.520791 | 3.2:+88443935 | None:intergenic |
| TGTAATGAGTAAACCGAAGT+TGG | 0.521710 | 3.2:+88443534 | None:intergenic |
| TACCTTTCTACGGTTTCAAG+TGG | 0.524260 | 3.2:-88443210 | MS.gene40707:CDS |
| CTCTGATCAGATCACCCCAT+TGG | 0.524686 | 3.2:-88443434 | MS.gene40707:CDS |
| GCAATAATTAGTAACATATG+TGG | 0.528980 | 3.2:+88443078 | None:intergenic |
| TTGCTTGCAATATCCTGACC+TGG | 0.530546 | 3.2:+88443403 | None:intergenic |
| GCCAGAAATAACAACTTCAA+TGG | 0.532857 | 3.2:-88443601 | MS.gene40707:CDS |
| TGACCTGGGTAGTATTCCAA+TGG | 0.537501 | 3.2:+88443418 | None:intergenic |
| TTGCTTGGCATAAGCAACCT+TGG | 0.538135 | 3.2:+88443006 | None:intergenic |
| CTGTTATCTGTTGCAGTGGG+TGG | 0.539076 | 3.2:-88443457 | MS.gene40707:CDS |
| CTCCACTTGAAACCGTAGAA+AGG | 0.540691 | 3.2:+88443208 | None:intergenic |
| GACACAGACAAGGCCAACTT+CGG | 0.549309 | 3.2:-88443547 | MS.gene40707:CDS |
| CTGCTGTTATCTGTTGCAGT+GGG | 0.550549 | 3.2:-88443460 | MS.gene40707:CDS |
| GTTGGCCTTGTCTGTGTCTG+AGG | 0.557959 | 3.2:+88443552 | None:intergenic |
| CTGCAAATGCACAGAACAAG+TGG | 0.562193 | 3.2:+88443836 | None:intergenic |
| GGCCAGTTCAGTGCAGATGA+AGG | 0.565062 | 3.2:-88443286 | MS.gene40707:CDS |
| GCAACAGATAACAGCAGTGC+CGG | 0.569645 | 3.2:+88443466 | None:intergenic |
| ATTGGAATACTACCCAGGTC+AGG | 0.570178 | 3.2:-88443416 | MS.gene40707:CDS |
| AACAAGTGGGTGAAATAAGA+GGG | 0.575691 | 3.2:+88443850 | None:intergenic |
| ATTGGAGTTGGAGAATCATG+AGG | 0.580602 | 3.2:+88443947 | None:intergenic |
| TAAAGCTACACAGGGGCTTG+GGG | 0.584711 | 3.2:-88443152 | MS.gene40707:CDS |
| GCAGGTGGTTGTGTCGTGGT+TGG | 0.585458 | 3.2:+88443328 | None:intergenic |
| CACTCAGAGTATATCTGCCA+AGG | 0.587655 | 3.2:-88443023 | MS.gene40707:CDS |
| TGAGGAGAGTAGAAATCAAG+AGG | 0.589315 | 3.2:+88443965 | None:intergenic |
| TTGCAGAAGAAATGGTGACT+TGG | 0.590390 | 3.2:+88443794 | None:intergenic |
| CAAGGATATAATAAATGTTG+GGG | 0.596445 | 3.2:-88443119 | MS.gene40707:CDS |
| AGAAGAAATGGTGACTTGGT+TGG | 0.609583 | 3.2:+88443798 | None:intergenic |
| GCTTGGGGCAGTGAAGTACA+AGG | 0.610199 | 3.2:-88443137 | MS.gene40707:CDS |
| ACCCCATTGGAATACTACCC+AGG | 0.610645 | 3.2:-88443421 | MS.gene40707:CDS |
| TTCATAGGGACAGATTGGTA+TGG | 0.610823 | 3.2:-88443055 | MS.gene40707:CDS |
| GCAAAAGCTGAAATTAAAGG+TGG | 0.612217 | 3.2:-88443916 | MS.gene40707:CDS |
| ACTGCTGTTATCTGTTGCAG+TGG | 0.625070 | 3.2:-88443461 | MS.gene40707:CDS |
| TGCAGCTTCTCTAGCATGGG+CGG | 0.626467 | 3.2:-88442771 | MS.gene40707:intron |
| TGCTTGCAATATCCTGACCT+GGG | 0.628937 | 3.2:+88443404 | None:intergenic |
| GATCAATGTCAGAAACTGCA+AGG | 0.646791 | 3.2:+88443872 | None:intergenic |
| TCCATCCTCAGACACAGACA+AGG | 0.662423 | 3.2:-88443557 | MS.gene40707:CDS |
| AGGAGCAGGTGGTTGTGTCG+TGG | 0.663999 | 3.2:+88443324 | None:intergenic |
| TATTGAACAAGACAGCAACT+GGG | 0.675280 | 3.2:-88442954 | MS.gene40707:CDS |
| TCGGTTTACTCATTACAGAG+TGG | 0.678345 | 3.2:-88443528 | MS.gene40707:CDS |
| CGTGGTTGGATAACTATCTG+AGG | 0.680417 | 3.2:+88443342 | None:intergenic |
| TGCAAATGCACAGAACAAGT+GGG | 0.684809 | 3.2:+88443837 | None:intergenic |
| ACCTGGGTAGTATTCCAATG+GGG | 0.748799 | 3.2:+88443420 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAGGATATAATAAATGTT+GGG | - | chr3.2:88443637-88443656 | MS.gene40707:CDS | 20.0% |
| !! | TACAAGGATATAATAAATGT+TGG | - | chr3.2:88443636-88443655 | MS.gene40707:CDS | 20.0% |
| !! | TCAAAAATATCATGGTTATT+AGG | + | chr3.2:88443585-88443604 | None:intergenic | 20.0% |
| !! | TTACTAATTATTGCTTCATA+GGG | - | chr3.2:88443688-88443707 | MS.gene40707:CDS | 20.0% |
| !!! | TAGCTTTATCAAAAATATCA+TGG | + | chr3.2:88443593-88443612 | None:intergenic | 20.0% |
| ! | CAAGGATATAATAAATGTTG+GGG | - | chr3.2:88443638-88443657 | MS.gene40707:CDS | 25.0% |
| ! | GCAATAATTAGTAACATATG+TGG | + | chr3.2:88443682-88443701 | None:intergenic | 25.0% |
| ! | GTTACTAATTATTGCTTCAT+AGG | - | chr3.2:88443687-88443706 | MS.gene40707:CDS | 25.0% |
| !! | AAGAATCTATGAACGATTTT+CGG | + | chr3.2:88443125-88443144 | None:intergenic | 25.0% |
| !! | ATTTTTGATAAAGCTACACA+GGG | - | chr3.2:88443597-88443616 | MS.gene40707:CDS | 25.0% |
| !!! | GAATGAATGTTTTTTTGAGT+AGG | + | chr3.2:88442773-88442792 | None:intergenic | 25.0% |
| !!! | TATTTTTGATAAAGCTACAC+AGG | - | chr3.2:88443596-88443615 | MS.gene40707:CDS | 25.0% |
| CAACGAAGCTATGTTTAATT+AGG | + | chr3.2:88443860-88443879 | None:intergenic | 30.0% | |
| TCTGCAAAAGCTGAAATTAA+AGG | - | chr3.2:88442838-88442857 | MS.gene40707:intron | 30.0% | |
| ! | AAAACCCTTTTATCAATTGG+TGG | - | chr3.2:88443042-88443061 | MS.gene40707:CDS | 30.0% |
| ! | AAGGAATCACAAAATGGATT+GGG | - | chr3.2:88443490-88443509 | MS.gene40707:CDS | 30.0% |
| ! | GTGAAAACCCTTTTATCAAT+TGG | - | chr3.2:88443039-88443058 | MS.gene40707:CDS | 30.0% |
| ! | TTTTTGATAAAGCTACACAG+GGG | - | chr3.2:88443598-88443617 | MS.gene40707:CDS | 30.0% |
| !! | ACCATTGAAGTTGTTATTTC+TGG | + | chr3.2:88443160-88443179 | None:intergenic | 30.0% |
| AACAAGTGGGTGAAATAAGA+GGG | + | chr3.2:88442910-88442929 | None:intergenic | 35.0% | |
| ATATTGAACAAGACAGCAAC+TGG | - | chr3.2:88443802-88443821 | MS.gene40707:CDS | 35.0% | |
| ATATTGCAAGCAACTTGGAT+TGG | - | chr3.2:88443364-88443383 | MS.gene40707:CDS | 35.0% | |
| CAGATGAAGGAATCACAAAA+TGG | - | chr3.2:88443484-88443503 | MS.gene40707:CDS | 35.0% | |
| CCAAAAAGCAAACTAGCATT+GGG | - | chr3.2:88443522-88443541 | MS.gene40707:CDS | 35.0% | |
| CTGAAATTAAAGGTGGCTAT+TGG | - | chr3.2:88442848-88442867 | MS.gene40707:intron | 35.0% | |
| CTGATTGTGAGTCATTCTAA+CGG | - | chr3.2:88443940-88443959 | MS.gene40707:CDS | 35.0% | |
| GAAGGAATCACAAAATGGAT+TGG | - | chr3.2:88443489-88443508 | MS.gene40707:CDS | 35.0% | |
| GATTGTTTGGATACTTTGCT+TGG | - | chr3.2:88443778-88443797 | MS.gene40707:CDS | 35.0% | |
| GCAAAAGCTGAAATTAAAGG+TGG | - | chr3.2:88442841-88442860 | MS.gene40707:intron | 35.0% | |
| GCCAGAAATAACAACTTCAA+TGG | - | chr3.2:88443156-88443175 | MS.gene40707:CDS | 35.0% | |
| GGCACAAAAATTTGCCAATA+TGG | - | chr3.2:88443083-88443102 | MS.gene40707:CDS | 35.0% | |
| TATTGAACAAGACAGCAACT+GGG | - | chr3.2:88443803-88443822 | MS.gene40707:CDS | 35.0% | |
| TATTGCAAGCAACTTGGATT+GGG | - | chr3.2:88443365-88443384 | MS.gene40707:CDS | 35.0% | |
| TCCAAAAAGCAAACTAGCAT+TGG | - | chr3.2:88443521-88443540 | MS.gene40707:CDS | 35.0% | |
| TGATTGTGAGTCATTCTAAC+GGG | - | chr3.2:88443941-88443960 | MS.gene40707:CDS | 35.0% | |
| TGTAATGAGTAAACCGAAGT+TGG | + | chr3.2:88443226-88443245 | None:intergenic | 35.0% | |
| ! | CTTGGTTGGTATTAGAATCA+AGG | + | chr3.2:88442948-88442967 | None:intergenic | 35.0% |
| ! | GATAACTATCTGAGGTGAAA+AGG | + | chr3.2:88443410-88443429 | None:intergenic | 35.0% |
| ! | GCAAATTTTTGTGCCAAAGT+AGG | + | chr3.2:88443078-88443097 | None:intergenic | 35.0% |
| ! | TCCAAACAATCCATTTTGCT+TGG | + | chr3.2:88443769-88443788 | None:intergenic | 35.0% |
| !! | AGTTGTTATTTCTGGCAAGT+TGG | + | chr3.2:88443152-88443171 | None:intergenic | 35.0% |
| !! | ATCACAAAATGGATTGGGTT+AGG | - | chr3.2:88443495-88443514 | MS.gene40707:CDS | 35.0% |
| AACCTTCACTGAAACCATTC+AGG | - | chr3.2:88443002-88443021 | MS.gene40707:CDS | 40.0% | |
| ATTGCTTCATAGGGACAGAT+TGG | - | chr3.2:88443697-88443716 | MS.gene40707:CDS | 40.0% | |
| ATTGGAGTTGGAGAATCATG+AGG | + | chr3.2:88442813-88442832 | None:intergenic | 40.0% | |
| CCCACCACCAATTGATAAAA+GGG | + | chr3.2:88443049-88443068 | None:intergenic | 40.0% | |
| GAACAAGTGGGTGAAATAAG+AGG | + | chr3.2:88442911-88442930 | None:intergenic | 40.0% | |
| GATCAATGTCAGAAACTGCA+AGG | + | chr3.2:88442888-88442907 | None:intergenic | 40.0% | |
| GGCTATTGGTATTCTGATAG+TGG | - | chr3.2:88442862-88442881 | MS.gene40707:intron | 40.0% | |
| GTTGCTTATGCCAAGCAAAA+TGG | - | chr3.2:88443756-88443775 | MS.gene40707:CDS | 40.0% | |
| TACCTTTCTACGGTTTCAAG+TGG | - | chr3.2:88443547-88443566 | MS.gene40707:CDS | 40.0% | |
| TATAATAAATGTTGGGGCGC+AGG | - | chr3.2:88443644-88443663 | MS.gene40707:CDS | 40.0% | |
| TCAGGATATTGCAAGCAACT+TGG | - | chr3.2:88443359-88443378 | MS.gene40707:CDS | 40.0% | |
| TCGGTTTACTCATTACAGAG+TGG | - | chr3.2:88443229-88443248 | MS.gene40707:CDS | 40.0% | |
| TGAACTACTCTTTGCCTGAA+TGG | + | chr3.2:88443019-88443038 | None:intergenic | 40.0% | |
| TGAGGAGAGTAGAAATCAAG+AGG | + | chr3.2:88442795-88442814 | None:intergenic | 40.0% | |
| TGCAAATGCACAGAACAAGT+GGG | + | chr3.2:88442923-88442942 | None:intergenic | 40.0% | |
| TTCATAGGGACAGATTGGTA+TGG | - | chr3.2:88443702-88443721 | MS.gene40707:CDS | 40.0% | |
| TTGCAGAAGAAATGGTGACT+TGG | + | chr3.2:88442966-88442985 | None:intergenic | 40.0% | |
| TTGCAGAAGAGAATTGGAGT+TGG | + | chr3.2:88442825-88442844 | None:intergenic | 40.0% | |
| ! | ACCCTTTTATCAATTGGTGG+TGG | - | chr3.2:88443045-88443064 | MS.gene40707:CDS | 40.0% |
| ! | CAATGGTCTTGATCTTGACT+GGG | - | chr3.2:88443173-88443192 | MS.gene40707:CDS | 40.0% |
| ! | CAGCTTTTGCAGAAGAGAAT+TGG | + | chr3.2:88442831-88442850 | None:intergenic | 40.0% |
| ! | TATGAACGATTTTCGGCTAC+TGG | + | chr3.2:88443118-88443137 | None:intergenic | 40.0% |
| ! | TCAATGGTCTTGATCTTGAC+TGG | - | chr3.2:88443172-88443191 | MS.gene40707:CDS | 40.0% |
| ! | TTTTGCAGCTTCTCTAGCAT+GGG | - | chr3.2:88443983-88444002 | MS.gene40707:CDS | 40.0% |
| ! | TTTTTGCAGCTTCTCTAGCA+TGG | - | chr3.2:88443982-88444001 | MS.gene40707:CDS | 40.0% |
| !! | AGAAGAAATGGTGACTTGGT+TGG | + | chr3.2:88442962-88442981 | None:intergenic | 40.0% |
| !! | CCCTTTTATCAATTGGTGGT+GGG | - | chr3.2:88443046-88443065 | MS.gene40707:CDS | 40.0% |
| !! | GCCAAGCAAAATGGATTGTT+TGG | - | chr3.2:88443765-88443784 | MS.gene40707:CDS | 40.0% |
| !!! | CCCAATGCTAGTTTGCTTTT+TGG | + | chr3.2:88443525-88443544 | None:intergenic | 40.0% |
| !!! | CCTTTTATCAATTGGTGGTG+GGG | - | chr3.2:88443047-88443066 | MS.gene40707:CDS | 40.0% |
| !!! | CTTTTATCAATTGGTGGTGG+GGG | - | chr3.2:88443048-88443067 | MS.gene40707:CDS | 40.0% |
| ACCTGGGTAGTATTCCAATG+GGG | + | chr3.2:88443340-88443359 | None:intergenic | 45.0% | |
| ACTGCTGTTATCTGTTGCAG+TGG | - | chr3.2:88443296-88443315 | MS.gene40707:CDS | 45.0% | |
| AGCTGCGTTTGCAGAAGAAA+TGG | + | chr3.2:88442974-88442993 | None:intergenic | 45.0% | |
| ATAAAGCTACACAGGGGCTT+GGG | - | chr3.2:88443604-88443623 | MS.gene40707:CDS | 45.0% | |
| ATTGGAATACTACCCAGGTC+AGG | - | chr3.2:88443341-88443360 | MS.gene40707:CDS | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | - | chr3.2:88443734-88443753 | MS.gene40707:CDS | 45.0% | |
| CCCCACCACCAATTGATAAA+AGG | + | chr3.2:88443050-88443069 | None:intergenic | 45.0% | |
| CGTGGTTGGATAACTATCTG+AGG | + | chr3.2:88443418-88443437 | None:intergenic | 45.0% | |
| CTCCACTTGAAACCGTAGAA+AGG | + | chr3.2:88443552-88443571 | None:intergenic | 45.0% | |
| CTGCAAATGCACAGAACAAG+TGG | + | chr3.2:88442924-88442943 | None:intergenic | 45.0% | |
| CTGCTGTTATCTGTTGCAGT+GGG | - | chr3.2:88443297-88443316 | MS.gene40707:CDS | 45.0% | |
| GACCTGGGTAGTATTCCAAT+GGG | + | chr3.2:88443341-88443360 | None:intergenic | 45.0% | |
| GCATTGGGTGTACCTTTCTA+CGG | - | chr3.2:88443537-88443556 | MS.gene40707:CDS | 45.0% | |
| TGACCTGGGTAGTATTCCAA+TGG | + | chr3.2:88443342-88443361 | None:intergenic | 45.0% | |
| TGCCTGAATGGTTTCAGTGA+AGG | + | chr3.2:88443007-88443026 | None:intergenic | 45.0% | |
| TGCTTGCAATATCCTGACCT+GGG | + | chr3.2:88443356-88443375 | None:intergenic | 45.0% | |
| TTCCTTCATCTGCACTGAAC+TGG | + | chr3.2:88443476-88443495 | None:intergenic | 45.0% | |
| TTGCTTGCAATATCCTGACC+TGG | + | chr3.2:88443357-88443376 | None:intergenic | 45.0% | |
| TTGCTTGGCATAAGCAACCT+TGG | + | chr3.2:88443754-88443773 | None:intergenic | 45.0% | |
| AACTGGGCTCTTTCTCAAGC+AGG | - | chr3.2:88443819-88443838 | MS.gene40707:CDS | 50.0% | |
| ACCCAAGAGTCTAGCAGTTC+TGG | - | chr3.2:88443264-88443283 | MS.gene40707:CDS | 50.0% | |
| ACCCCATTGGAATACTACCC+AGG | - | chr3.2:88443336-88443355 | MS.gene40707:CDS | 50.0% | |
| CTCTGATCAGATCACCCCAT+TGG | - | chr3.2:88443323-88443342 | MS.gene40707:CDS | 50.0% | |
| CTGTTATCTGTTGCAGTGGG+TGG | - | chr3.2:88443300-88443319 | MS.gene40707:CDS | 50.0% | |
| GACACAGACAAGGCCAACTT+CGG | - | chr3.2:88443210-88443229 | MS.gene40707:CDS | 50.0% | |
| GATAAAGCTACACAGGGGCT+TGG | - | chr3.2:88443603-88443622 | MS.gene40707:CDS | 50.0% | |
| GCAACAGATAACAGCAGTGC+CGG | + | chr3.2:88443294-88443313 | None:intergenic | 50.0% | |
| GCCAGAACTGCTAGACTCTT+GGG | + | chr3.2:88443268-88443287 | None:intergenic | 50.0% | |
| TAAAGCTACACAGGGGCTTG+GGG | - | chr3.2:88443605-88443624 | MS.gene40707:CDS | 50.0% | |
| TCCATCCTCAGACACAGACA+AGG | - | chr3.2:88443200-88443219 | MS.gene40707:CDS | 50.0% | |
| TGCCAGAACTGCTAGACTCT+TGG | + | chr3.2:88443269-88443288 | None:intergenic | 50.0% | |
| ! | GCTCCTTTGAAAAACCCGAC+AGG | - | chr3.2:88443450-88443469 | MS.gene40707:CDS | 50.0% |
| !! | ACGATTTTCGGCTACTGGCT+TGG | + | chr3.2:88443113-88443132 | None:intergenic | 50.0% |
| !! | ACTGGCTTGGCTAGCCATAT+TGG | + | chr3.2:88443100-88443119 | None:intergenic | 50.0% |
| !! | GGGTTTTTCAAAGGAGCAGG+TGG | + | chr3.2:88443447-88443466 | None:intergenic | 50.0% |
| !! | GTCGGGTTTTTCAAAGGAGC+AGG | + | chr3.2:88443450-88443469 | None:intergenic | 50.0% |
| !! | TGGCCTGTCGGGTTTTTCAA+AGG | + | chr3.2:88443456-88443475 | None:intergenic | 50.0% |
| !! | TTATCAATTGGTGGTGGGGG+TGG | - | chr3.2:88443051-88443070 | MS.gene40707:CDS | 50.0% |
| GCCTTGTCTGTGTCTGAGGA+TGG | + | chr3.2:88443204-88443223 | None:intergenic | 55.0% | |
| GCTTGGGGCAGTGAAGTACA+AGG | - | chr3.2:88443620-88443639 | MS.gene40707:CDS | 55.0% | |
| GGCCAGTTCAGTGCAGATGA+AGG | - | chr3.2:88443471-88443490 | MS.gene40707:CDS | 55.0% | |
| GGGCTCTTTCTCAAGCAGGT+GGG | - | chr3.2:88443823-88443842 | MS.gene40707:CDS | 55.0% | |
| TGCAGCTTCTCTAGCATGGG+CGG | - | chr3.2:88443986-88444005 | MS.gene40707:CDS | 55.0% | |
| TGGGCTCTTTCTCAAGCAGG+TGG | - | chr3.2:88443822-88443841 | MS.gene40707:CDS | 55.0% | |
| ! | GTCTAGCAGTTCTGGCAAGC+CGG | - | chr3.2:88443272-88443291 | MS.gene40707:CDS | 55.0% |
| ! | TCTGCACTGAACTGGCCTGT+CGG | + | chr3.2:88443468-88443487 | None:intergenic | 55.0% |
| !! | GTTGGCCTTGTCTGTGTCTG+AGG | + | chr3.2:88443208-88443227 | None:intergenic | 55.0% |
| AGGAGCAGGTGGTTGTGTCG+TGG | + | chr3.2:88443436-88443455 | None:intergenic | 60.0% | |
| GCAGGTGGTTGTGTCGTGGT+TGG | + | chr3.2:88443432-88443451 | None:intergenic | 60.0% | |
| TGGTGGGGGTGGTCCTACTT+TGG | - | chr3.2:88443062-88443081 | MS.gene40707:CDS | 60.0% | |
| ! | CTGCACTGAACTGGCCTGTC+GGG | + | chr3.2:88443467-88443486 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 88442766 | 88444013 | 88442766 | ID=MS.gene40707 |
| chr3.2 | mRNA | 88442766 | 88444013 | 88442766 | ID=MS.gene40707.t1;Parent=MS.gene40707 |
| chr3.2 | exon | 88442939 | 88444013 | 88442939 | ID=MS.gene40707.t1.exon1;Parent=MS.gene40707.t1 |
| chr3.2 | CDS | 88442939 | 88444013 | 88442939 | ID=cds.MS.gene40707.t1;Parent=MS.gene40707.t1 |
| chr3.2 | exon | 88442766 | 88442788 | 88442766 | ID=MS.gene40707.t1.exon2;Parent=MS.gene40707.t1 |
| chr3.2 | CDS | 88442766 | 88442788 | 88442766 | ID=cds.MS.gene40707.t1;Parent=MS.gene40707.t1 |
| Gene Sequence |
| Protein sequence |
