Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021954.t1 | XP_013462046.2 | 89.2 | 380 | 36 | 2 | 1 | 378 | 26 | 402 | 1.20E-188 | 669.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021954.t1 | O81862 | 49.2 | 364 | 170 | 6 | 11 | 365 | 9 | 366 | 1.1e-89 | 331.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021954.t1 | A0A396J6K9 | 89.2 | 380 | 36 | 2 | 1 | 378 | 26 | 402 | 9.0e-189 | 669.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44679 | MS.gene021954 | PPI |
| MS.gene40257 | MS.gene021954 | PPI |
| MS.gene44682 | MS.gene021954 | PPI |
| MS.gene014611 | MS.gene021954 | PPI |
| MS.gene014610 | MS.gene021954 | PPI |
| MS.gene40255 | MS.gene021954 | PPI |
| MS.gene48549 | MS.gene021954 | PPI |
| MS.gene72023 | MS.gene021954 | PPI |
| MS.gene53841 | MS.gene021954 | PPI |
| MS.gene72022 | MS.gene021954 | PPI |
| MS.gene43244 | MS.gene021954 | PPI |
| MS.gene40706 | MS.gene021954 | PPI |
| MS.gene036626 | MS.gene021954 | PPI |
| MS.gene72024 | MS.gene021954 | PPI |
| MS.gene40256 | MS.gene021954 | PPI |
| MS.gene58750 | MS.gene021954 | PPI |
| MS.gene40705 | MS.gene021954 | PPI |
| MS.gene021944 | MS.gene021954 | PPI |
| MS.gene40707 | MS.gene021954 | PPI |
| MS.gene041428 | MS.gene021954 | PPI |
| MS.gene021954 | MS.gene57747 | PPI |
| MS.gene57747 | MS.gene021954 | PPI |
| MS.gene055584 | MS.gene021954 | PPI |
| MS.gene014609 | MS.gene021954 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021954.t1 | MTR_3g110280 | 90.278 | 360 | 34 | 1 | 1 | 360 | 1 | 359 | 0.0 | 649 |
| MS.gene021954.t1 | MTR_3g110320 | 83.607 | 366 | 58 | 1 | 1 | 366 | 1 | 364 | 0.0 | 626 |
| MS.gene021954.t1 | MTR_3g110320 | 83.657 | 361 | 57 | 1 | 1 | 361 | 1 | 359 | 0.0 | 617 |
| MS.gene021954.t1 | MTR_4g116920 | 75.967 | 362 | 69 | 3 | 1 | 361 | 1 | 345 | 0.0 | 541 |
| MS.gene021954.t1 | MTR_1g013150 | 35.196 | 358 | 213 | 5 | 22 | 366 | 32 | 383 | 6.71e-69 | 222 |
| MS.gene021954.t1 | MTR_4g117040 | 36.559 | 372 | 210 | 10 | 9 | 364 | 6 | 367 | 9.22e-66 | 223 |
| MS.gene021954.t1 | MTR_4g117020 | 34.043 | 376 | 222 | 9 | 3 | 364 | 2 | 365 | 5.47e-62 | 213 |
| MS.gene021954.t1 | MTR_4g117000 | 35.429 | 350 | 204 | 9 | 30 | 365 | 35 | 376 | 2.98e-60 | 199 |
| MS.gene021954.t1 | MTR_4g117030 | 34.571 | 350 | 207 | 7 | 41 | 377 | 1 | 341 | 2.60e-59 | 204 |
| MS.gene021954.t1 | MTR_4g116990 | 35.876 | 354 | 201 | 8 | 30 | 365 | 37 | 382 | 4.30e-57 | 191 |
| MS.gene021954.t1 | MTR_4g117800 | 34.463 | 177 | 112 | 1 | 6 | 182 | 4 | 176 | 2.05e-24 | 104 |
| MS.gene021954.t1 | MTR_7g096730 | 40.476 | 84 | 42 | 3 | 289 | 364 | 3 | 86 | 1.86e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021954.t1 | AT4G19810 | 50.549 | 364 | 165 | 6 | 11 | 365 | 9 | 366 | 1.66e-118 | 349 |
| MS.gene021954.t1 | AT4G19810 | 50.549 | 364 | 165 | 6 | 11 | 365 | 9 | 366 | 1.66e-118 | 349 |
| MS.gene021954.t1 | AT4G19820 | 47.945 | 365 | 175 | 6 | 10 | 365 | 6 | 364 | 5.83e-106 | 317 |
| MS.gene021954.t1 | AT4G19800 | 42.162 | 370 | 191 | 6 | 25 | 377 | 2 | 365 | 1.53e-96 | 293 |
| MS.gene021954.t1 | AT4G19760 | 44.504 | 373 | 175 | 10 | 17 | 365 | 1 | 365 | 2.19e-93 | 285 |
| MS.gene021954.t1 | AT4G19750 | 44.353 | 363 | 174 | 10 | 17 | 362 | 1 | 352 | 1.25e-92 | 282 |
| MS.gene021954.t1 | AT4G19720 | 42.778 | 360 | 179 | 7 | 30 | 371 | 6 | 356 | 1.87e-88 | 271 |
| MS.gene021954.t1 | AT4G19730 | 42.183 | 339 | 167 | 9 | 17 | 333 | 1 | 332 | 4.06e-74 | 234 |
| MS.gene021954.t1 | AT4G19770 | 41.016 | 256 | 141 | 4 | 115 | 362 | 1 | 254 | 1.70e-58 | 191 |
| MS.gene021954.t1 | AT4G19740 | 35.602 | 191 | 109 | 5 | 138 | 318 | 24 | 210 | 1.39e-28 | 111 |
Find 88 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATGGAAGTTGTTATTTC+TGG | 0.149476 | 7.1:+80832373 | None:intergenic |
| ATACCAATAACCACCTTTAA+TGG | 0.242528 | 7.1:+80832685 | None:intergenic |
| GTTTGAGTTGGATAACTATC+TGG | 0.256686 | 7.1:+80832113 | None:intergenic |
| TCTACAAACGCTGCCATTAA+AGG | 0.257757 | 7.1:-80832698 | MS.gene021954:CDS |
| GCACTTGGTTTACCCTTCTA+TGG | 0.267748 | 7.1:-80831993 | MS.gene021954:CDS |
| GCCAAGCAAAATGGATTGTT+TGG | 0.270489 | 7.1:-80831765 | MS.gene021954:CDS |
| CAGCGTTTGTAGAGGAAAAT+TGG | 0.280388 | 7.1:+80832708 | None:intergenic |
| CTGCCATTAAAGGTGGTTAT+TGG | 0.284781 | 7.1:-80832688 | MS.gene021954:CDS |
| ACTCCATTTGTAACCATAGA+AGG | 0.300520 | 7.1:+80831980 | None:intergenic |
| CAGATGAAGGTCTCACAAAA+TGG | 0.306351 | 7.1:-80832046 | MS.gene021954:CDS |
| GTTGCTTATGCCAAGCAAAA+TGG | 0.325981 | 7.1:-80831774 | MS.gene021954:CDS |
| GACCTTCATCTGCACTAAAT+TGG | 0.342441 | 7.1:+80832057 | None:intergenic |
| GCCGCAGAGTCTAGGAGTTC+CGG | 0.370169 | 7.1:-80832266 | MS.gene021954:CDS |
| ATGGTGACTTGGTTGGTATT+AGG | 0.371295 | 7.1:+80832584 | None:intergenic |
| CTATGGTTACAAATGGAGTT+TGG | 0.386230 | 7.1:-80831976 | MS.gene021954:CDS |
| CGAATTACTCTTTAACTGAA+TGG | 0.386421 | 7.1:+80832520 | None:intergenic |
| GAAGTTGAAATGACCAACTT+TGG | 0.388370 | 7.1:-80832320 | MS.gene021954:CDS |
| CTGCACTAAATTGGCCAGTT+GGG | 0.395696 | 7.1:+80832066 | None:intergenic |
| TAACAACAGTACCGGCTTGC+CGG | 0.396736 | 7.1:+80832247 | None:intergenic |
| AGTAAAGCTACGCAGGGACT+AGG | 0.407460 | 7.1:-80831927 | MS.gene021954:CDS |
| CTCAAAATTACTGCTTCAAA+GGG | 0.414658 | 7.1:-80831842 | MS.gene021954:CDS |
| CATTCAGTTAAAGAGTAATT+CGG | 0.416514 | 7.1:-80832519 | MS.gene021954:CDS |
| CTGCTGTGGCCGCAGAGTCT+AGG | 0.417042 | 7.1:-80832274 | MS.gene021954:CDS |
| TGTGCTTTAGTAGAACGTTC+AGG | 0.418141 | 7.1:+80832464 | None:intergenic |
| TGTTGCAAACAACTTGGATT+GGG | 0.430200 | 7.1:-80832165 | MS.gene021954:CDS |
| TACCCTTCTATGGTTACAAA+TGG | 0.432906 | 7.1:-80831983 | MS.gene021954:CDS |
| AAATTGGACAAGACAACAAT+TGG | 0.443469 | 7.1:-80831728 | MS.gene021954:CDS |
| AAACAAGTGGGTGAAATAAG+AGG | 0.449767 | 7.1:+80832628 | None:intergenic |
| GTAAAGCTACGCAGGGACTA+GGG | 0.458430 | 7.1:-80831926 | MS.gene021954:CDS |
| ACTCAAAATTACTGCTTCAA+AGG | 0.460609 | 7.1:-80831843 | MS.gene021954:CDS |
| TCCATGGCCTTGATCTTGAC+TGG | 0.462821 | 7.1:-80832358 | MS.gene021954:CDS |
| ACTGCTTCAAAGGGACAGAT+TGG | 0.463515 | 7.1:-80831833 | MS.gene021954:CDS |
| CTCACAAAATGGGTAGGGTT+AGG | 0.464284 | 7.1:-80832035 | MS.gene021954:CDS |
| AGCTGCGTTTGTAGAAGAAA+TGG | 0.467412 | 7.1:+80832565 | None:intergenic |
| ATGTTGCAAACAACTTGGAT+TGG | 0.470996 | 7.1:-80832166 | MS.gene021954:CDS |
| TTTGAGTTGGATAACTATCT+GGG | 0.472310 | 7.1:+80832114 | None:intergenic |
| CTTGGTTGGTATTAGGATCA+AGG | 0.473190 | 7.1:+80832591 | None:intergenic |
| TCAAGATGTTGCAAACAACT+TGG | 0.478830 | 7.1:-80832171 | MS.gene021954:CDS |
| GTCATTTCAACTTCTGAGGA+TGG | 0.479248 | 7.1:+80832329 | None:intergenic |
| GCGGGTGGTTGTGTTTGAGT+TGG | 0.482952 | 7.1:+80832101 | None:intergenic |
| TCTGCACTAAATTGGCCAGT+TGG | 0.504088 | 7.1:+80832065 | None:intergenic |
| TGACCTGGGTAGTACTTCAA+TGG | 0.515075 | 7.1:+80832191 | None:intergenic |
| TAACTGAATGGTTTCAGTGA+AGG | 0.515519 | 7.1:+80832532 | None:intergenic |
| TTGGAGAATCATGAGGAGAG+TGG | 0.515988 | 7.1:+80832733 | None:intergenic |
| AGATGAAGGTCTCACAAAAT+GGG | 0.516707 | 7.1:-80832045 | MS.gene021954:CDS |
| AATTGGACTCTTTCTCAAGC+AGG | 0.528807 | 7.1:-80831711 | MS.gene021954:intron |
| TTGTAGAGGAAAATTGGAGT+TGG | 0.530932 | 7.1:+80832714 | None:intergenic |
| CTTTACACTAGATTTGCCCC+AGG | 0.531539 | 7.1:+80831388 | None:intergenic |
| GTTGGTCATTTCAACTTCTG+AGG | 0.534568 | 7.1:+80832325 | None:intergenic |
| GTCTAGGAGTTCCGGCAAGC+CGG | 0.536961 | 7.1:-80832258 | MS.gene021954:CDS |
| TTGCTTGGCATAAGCAACCT+TGG | 0.538135 | 7.1:+80831779 | None:intergenic |
| TTGTTTGCAACATCTTGACC+TGG | 0.548598 | 7.1:+80832176 | None:intergenic |
| GCCAGTCAAGATCAAGGCCA+TGG | 0.551440 | 7.1:+80832357 | None:intergenic |
| AGTTGTTATTTCTGGCTAGT+CGG | 0.552779 | 7.1:+80832381 | None:intergenic |
| TGTAATGAGAAAACCAAAGT+TGG | 0.557402 | 7.1:+80832307 | None:intergenic |
| TTGTTATCTGCTGCAGTGGG+TGG | 0.559981 | 7.1:-80832230 | MS.gene021954:CDS |
| CTGTTGTTATCTGCTGCAGT+GGG | 0.561968 | 7.1:-80832233 | MS.gene021954:CDS |
| ACTGGCTTGGCTAGACATGT+TGG | 0.568429 | 7.1:+80832433 | None:intergenic |
| TACAGCGTGGAGAGCTGCTG+TGG | 0.570204 | 7.1:-80832288 | MS.gene021954:CDS |
| GGCCAATTTAGTGCAGATGA+AGG | 0.571051 | 7.1:-80832059 | MS.gene021954:CDS |
| GAAGGTCTCACAAAATGGGT+AGG | 0.571961 | 7.1:-80832041 | MS.gene021954:CDS |
| AACAAGTGGGTGAAATAAGA+GGG | 0.575691 | 7.1:+80832629 | None:intergenic |
| CAGCAAATGCACAAAACAAG+TGG | 0.579073 | 7.1:+80832615 | None:intergenic |
| CTCCATTTGTAACCATAGAA+GGG | 0.586080 | 7.1:+80831981 | None:intergenic |
| AAGGTCTCACAAAATGGGTA+GGG | 0.587493 | 7.1:-80832040 | MS.gene021954:CDS |
| CACTCAGAGTATATCTGCCA+AGG | 0.587655 | 7.1:-80831796 | MS.gene021954:CDS |
| ATCTAGTGTAAAGCATGTTG+TGG | 0.588380 | 7.1:-80831378 | MS.gene021954:CDS |
| GATACAGCCAGTCAAGATCA+AGG | 0.589592 | 7.1:+80832351 | None:intergenic |
| AGAAGAAATGGTGACTTGGT+TGG | 0.600417 | 7.1:+80832577 | None:intergenic |
| GCAGCAGATAACAACAGTAC+CGG | 0.602334 | 7.1:+80832239 | None:intergenic |
| TGAGGAGAGTGGAAATCAAG+AGG | 0.606133 | 7.1:+80832744 | None:intergenic |
| TTCAAAGGGACAGATTGGTA+TGG | 0.606399 | 7.1:-80831828 | MS.gene021954:CDS |
| TTTAATGGCAGCGTTTGTAG+AGG | 0.608544 | 7.1:+80832700 | None:intergenic |
| ACTGTTGTTATCTGCTGCAG+TGG | 0.615630 | 7.1:-80832234 | MS.gene021954:CDS |
| TTTGCAGCTTCTCAAGCCTG+GGG | 0.621387 | 7.1:-80831404 | MS.gene021954:intron |
| TAAAGCTACGCAGGGACTAG+GGG | 0.627917 | 7.1:-80831925 | MS.gene021954:CDS |
| GCCAGAAATAACAACTTCCA+TGG | 0.628402 | 7.1:-80832374 | MS.gene021954:CDS |
| ACTAGGGGCAGTGAAGTACA+AGG | 0.628451 | 7.1:-80831910 | MS.gene021954:CDS |
| ATTGGAGTTGGAGAATCATG+AGG | 0.636575 | 7.1:+80832726 | None:intergenic |
| TTGTAGAAGAAATGGTGACT+TGG | 0.641849 | 7.1:+80832573 | None:intergenic |
| AGCAAATGCACAAAACAAGT+GGG | 0.646781 | 7.1:+80832616 | None:intergenic |
| GATCAATCTCAGAAACTGCA+AGG | 0.648716 | 7.1:+80832651 | None:intergenic |
| TGTTTGCAACATCTTGACCT+GGG | 0.652675 | 7.1:+80832177 | None:intergenic |
| ACAAACGCTGCCATTAAAGG+TGG | 0.664680 | 7.1:-80832695 | MS.gene021954:CDS |
| GTTGTGGCTATAGTCACACC+AGG | 0.665701 | 7.1:-80831362 | MS.gene021954:intron |
| ACTCCATTGAAGTACTACCC+AGG | 0.697331 | 7.1:-80832194 | MS.gene021954:CDS |
| GCCGGAACTCCTAGACTCTG+CGG | 0.700936 | 7.1:+80832265 | None:intergenic |
| TTGAGTTGGATAACTATCTG+GGG | 0.706447 | 7.1:+80832115 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAACTCTTTTTATAT+CGG | + | chr7.1:80832541-80832560 | None:intergenic | 10.0% |
| !! | GTAAAAAATACAATAATTGA+AGG | + | chr7.1:80832409-80832428 | None:intergenic | 15.0% |
| !! | ACAAGGATATAAAAAATACT+GGG | - | chr7.1:80832160-80832179 | MS.gene021954:CDS | 20.0% |
| !! | AGAACATGAAAAAAAAATTG+GGG | + | chr7.1:80832722-80832741 | None:intergenic | 20.0% |
| !! | CAGAACATGAAAAAAAAATT+GGG | + | chr7.1:80832723-80832742 | None:intergenic | 20.0% |
| !! | TACAAGGATATAAAAAATAC+TGG | - | chr7.1:80832159-80832178 | MS.gene021954:CDS | 20.0% |
| !! | TCAGAACATGAAAAAAAAAT+TGG | + | chr7.1:80832724-80832743 | None:intergenic | 20.0% |
| !! | TTTGACATACCATTAAAAAT+AGG | + | chr7.1:80832591-80832610 | None:intergenic | 20.0% |
| !!! | AAGAATCTATGAAAGATTTT+CGG | + | chr7.1:80831648-80831667 | None:intergenic | 20.0% |
| !!! | TAGCTTTACTAAAAATTCTA+CGG | + | chr7.1:80832116-80832135 | None:intergenic | 20.0% |
| ! | AAGGATATAAAAAATACTGG+GGG | - | chr7.1:80832162-80832181 | MS.gene021954:CDS | 25.0% |
| ! | CAAGGATATAAAAAATACTG+GGG | - | chr7.1:80832161-80832180 | MS.gene021954:CDS | 25.0% |
| ! | CATTCAGTTAAAGAGTAATT+CGG | - | chr7.1:80831534-80831553 | MS.gene021954:intron | 25.0% |
| ! | CTAAAAATTCTACGGTTATT+AGG | + | chr7.1:80832108-80832127 | None:intergenic | 25.0% |
| !!! | CTTTTACCACCTATTTTTAA+TGG | - | chr7.1:80832579-80832598 | MS.gene021954:CDS | 25.0% |
| AAAATAGGTGGTAAAAGTCA+AGG | + | chr7.1:80832576-80832595 | None:intergenic | 30.0% | |
| AAATTGGACAAGACAACAAT+TGG | - | chr7.1:80832325-80832344 | MS.gene021954:CDS | 30.0% | |
| ACTCAAAATTACTGCTTCAA+AGG | - | chr7.1:80832210-80832229 | MS.gene021954:CDS | 30.0% | |
| AGGATATAAAAAATACTGGG+GGG | - | chr7.1:80832163-80832182 | MS.gene021954:CDS | 30.0% | |
| ATACCAATAACCACCTTTAA+TGG | + | chr7.1:80831371-80831390 | None:intergenic | 30.0% | |
| CAACAAAGCAGTGTTTAATT+AGG | + | chr7.1:80832384-80832403 | None:intergenic | 30.0% | |
| CGAATTACTCTTTAACTGAA+TGG | + | chr7.1:80831536-80831555 | None:intergenic | 30.0% | |
| CTCAAAATTACTGCTTCAAA+GGG | - | chr7.1:80832211-80832230 | MS.gene021954:CDS | 30.0% | |
| GACATACCATTAAAAATAGG+TGG | + | chr7.1:80832588-80832607 | None:intergenic | 30.0% | |
| TGTAATGAGAAAACCAAAGT+TGG | + | chr7.1:80831749-80831768 | None:intergenic | 30.0% | |
| ! | AAAACGCTTTTATCAATTGG+TGG | - | chr7.1:80831559-80831578 | MS.gene021954:intron | 30.0% |
| ! | GATTGTTTGGATATTTTGCT+TGG | - | chr7.1:80832301-80832320 | MS.gene021954:CDS | 30.0% |
| ! | GTGAAAACGCTTTTATCAAT+TGG | - | chr7.1:80831556-80831575 | MS.gene021954:intron | 30.0% |
| ! | TAACTCTTTTTATATCGGCA+TGG | + | chr7.1:80832536-80832555 | None:intergenic | 30.0% |
| !! | GCAGTAATTTTGAGTATATG+TGG | + | chr7.1:80832205-80832224 | None:intergenic | 30.0% |
| !! | TTTGAGTTGGATAACTATCT+GGG | + | chr7.1:80831942-80831961 | None:intergenic | 30.0% |
| !!! | AATTTTTAGTAAAGCTACGC+AGG | - | chr7.1:80832119-80832138 | MS.gene021954:CDS | 30.0% |
| !!! | ATTTTTAGTAAAGCTACGCA+GGG | - | chr7.1:80832120-80832139 | MS.gene021954:CDS | 30.0% |
| AAAAAAATTGGGGTAGAACC+TGG | + | chr7.1:80832712-80832731 | None:intergenic | 35.0% | |
| AAACAAGTGGGTGAAATAAG+AGG | + | chr7.1:80831428-80831447 | None:intergenic | 35.0% | |
| AACAAGTGGGTGAAATAAGA+GGG | + | chr7.1:80831427-80831446 | None:intergenic | 35.0% | |
| ACTCCATTTGTAACCATAGA+AGG | + | chr7.1:80832076-80832095 | None:intergenic | 35.0% | |
| AGATGAAGGTCTCACAAAAT+GGG | - | chr7.1:80832008-80832027 | MS.gene021954:CDS | 35.0% | |
| AGCAAATGCACAAAACAAGT+GGG | + | chr7.1:80831440-80831459 | None:intergenic | 35.0% | |
| ATCTAGTGTAAAGCATGTTG+TGG | - | chr7.1:80832675-80832694 | MS.gene021954:CDS | 35.0% | |
| ATGTTGCAAACAACTTGGAT+TGG | - | chr7.1:80831887-80831906 | MS.gene021954:CDS | 35.0% | |
| CTATGGTTACAAATGGAGTT+TGG | - | chr7.1:80832077-80832096 | MS.gene021954:CDS | 35.0% | |
| CTCCATTTGTAACCATAGAA+GGG | + | chr7.1:80832075-80832094 | None:intergenic | 35.0% | |
| GAAGTTGAAATGACCAACTT+TGG | - | chr7.1:80831733-80831752 | MS.gene021954:CDS | 35.0% | |
| TAACTGAATGGTTTCAGTGA+AGG | + | chr7.1:80831524-80831543 | None:intergenic | 35.0% | |
| TACCCTTCTATGGTTACAAA+TGG | - | chr7.1:80832070-80832089 | MS.gene021954:CDS | 35.0% | |
| TCAAGATGTTGCAAACAACT+TGG | - | chr7.1:80831882-80831901 | MS.gene021954:CDS | 35.0% | |
| TGTTGCAAACAACTTGGATT+GGG | - | chr7.1:80831888-80831907 | MS.gene021954:CDS | 35.0% | |
| TTGTAGAAGAAATGGTGACT+TGG | + | chr7.1:80831483-80831502 | None:intergenic | 35.0% | |
| TTGTAGAGGAAAATTGGAGT+TGG | + | chr7.1:80831342-80831361 | None:intergenic | 35.0% | |
| ! | GGATATTTTGCTTGGCAAAT+TGG | - | chr7.1:80832309-80832328 | MS.gene021954:CDS | 35.0% |
| ! | TATGAAAGATTTTCGGCTAC+TGG | + | chr7.1:80831641-80831660 | None:intergenic | 35.0% |
| ! | TCCAAACAATCCATTTTGCT+TGG | + | chr7.1:80832292-80832311 | None:intergenic | 35.0% |
| !! | AGTTGTTATTTCTGGCTAGT+CGG | + | chr7.1:80831675-80831694 | None:intergenic | 35.0% |
| !! | GTTTGAGTTGGATAACTATC+TGG | + | chr7.1:80831943-80831962 | None:intergenic | 35.0% |
| !! | TTGAGTTGGATAACTATCTG+GGG | + | chr7.1:80831941-80831960 | None:intergenic | 35.0% |
| AAGGTCTCACAAAATGGGTA+GGG | - | chr7.1:80832013-80832032 | MS.gene021954:CDS | 40.0% | |
| AATTGGACTCTTTCTCAAGC+AGG | - | chr7.1:80832342-80832361 | MS.gene021954:CDS | 40.0% | |
| AGCTGCGTTTGTAGAAGAAA+TGG | + | chr7.1:80831491-80831510 | None:intergenic | 40.0% | |
| ATTGGAGTTGGAGAATCATG+AGG | + | chr7.1:80831330-80831349 | None:intergenic | 40.0% | |
| CAGATGAAGGTCTCACAAAA+TGG | - | chr7.1:80832007-80832026 | MS.gene021954:CDS | 40.0% | |
| CAGCAAATGCACAAAACAAG+TGG | + | chr7.1:80831441-80831460 | None:intergenic | 40.0% | |
| CAGCGTTTGTAGAGGAAAAT+TGG | + | chr7.1:80831348-80831367 | None:intergenic | 40.0% | |
| CCAAAAAGCAAACTTGCACT+TGG | - | chr7.1:80832045-80832064 | MS.gene021954:CDS | 40.0% | |
| CTGCCATTAAAGGTGGTTAT+TGG | - | chr7.1:80831365-80831384 | MS.gene021954:CDS | 40.0% | |
| GACCTTCATCTGCACTAAAT+TGG | + | chr7.1:80831999-80832018 | None:intergenic | 40.0% | |
| GATCAATCTCAGAAACTGCA+AGG | + | chr7.1:80831405-80831424 | None:intergenic | 40.0% | |
| GCCAGAAATAACAACTTCCA+TGG | - | chr7.1:80831679-80831698 | MS.gene021954:intron | 40.0% | |
| GTTGCTTATGCCAAGCAAAA+TGG | - | chr7.1:80832279-80832298 | MS.gene021954:CDS | 40.0% | |
| GTTGGTCATTTCAACTTCTG+AGG | + | chr7.1:80831731-80831750 | None:intergenic | 40.0% | |
| TCTACAAACGCTGCCATTAA+AGG | - | chr7.1:80831355-80831374 | MS.gene021954:intron | 40.0% | |
| TGTGCTTTAGTAGAACGTTC+AGG | + | chr7.1:80831592-80831611 | None:intergenic | 40.0% | |
| TGTTTGCAACATCTTGACCT+GGG | + | chr7.1:80831879-80831898 | None:intergenic | 40.0% | |
| TTCAAAGGGACAGATTGGTA+TGG | - | chr7.1:80832225-80832244 | MS.gene021954:CDS | 40.0% | |
| TTGTTTGCAACATCTTGACC+TGG | + | chr7.1:80831880-80831899 | None:intergenic | 40.0% | |
| TTTAATGGCAGCGTTTGTAG+AGG | + | chr7.1:80831356-80831375 | None:intergenic | 40.0% | |
| ! | ACGCTTTTATCAATTGGTGG+TGG | - | chr7.1:80831562-80831581 | MS.gene021954:intron | 40.0% |
| ! | CAAGAGGAACGAATGCTTTT+TGG | + | chr7.1:80831296-80831315 | None:intergenic | 40.0% |
| ! | CTTGGTTGGTATTAGGATCA+AGG | + | chr7.1:80831465-80831484 | None:intergenic | 40.0% |
| ! | GTCATTTCAACTTCTGAGGA+TGG | + | chr7.1:80831727-80831746 | None:intergenic | 40.0% |
| !! | AGAAGAAATGGTGACTTGGT+TGG | + | chr7.1:80831479-80831498 | None:intergenic | 40.0% |
| !! | AGTTGGGTTTTTCAAAGGAG+CGG | + | chr7.1:80831974-80831993 | None:intergenic | 40.0% |
| !! | ATGGTGACTTGGTTGGTATT+AGG | + | chr7.1:80831472-80831491 | None:intergenic | 40.0% |
| !! | CCAAGTGCAAGTTTGCTTTT+TGG | + | chr7.1:80832048-80832067 | None:intergenic | 40.0% |
| !! | GCCAAGCAAAATGGATTGTT+TGG | - | chr7.1:80832288-80832307 | MS.gene021954:CDS | 40.0% |
| !! | GCCATGGAAGTTGTTATTTC+TGG | + | chr7.1:80831683-80831702 | None:intergenic | 40.0% |
| !! | TTGGTTTTCTCATTACAGCG+TGG | - | chr7.1:80831752-80831771 | MS.gene021954:CDS | 40.0% |
| !!! | CTTTTATCAATTGGTGGTGG+TGG | - | chr7.1:80831565-80831584 | MS.gene021954:intron | 40.0% |
| ACAAACGCTGCCATTAAAGG+TGG | - | chr7.1:80831358-80831377 | MS.gene021954:intron | 45.0% | |
| ACTGCTTCAAAGGGACAGAT+TGG | - | chr7.1:80832220-80832239 | MS.gene021954:CDS | 45.0% | |
| ACTGTTGTTATCTGCTGCAG+TGG | - | chr7.1:80831819-80831838 | MS.gene021954:CDS | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | - | chr7.1:80832257-80832276 | MS.gene021954:CDS | 45.0% | |
| CTCACAAAATGGGTAGGGTT+AGG | - | chr7.1:80832018-80832037 | MS.gene021954:CDS | 45.0% | |
| CTGCACTAAATTGGCCAGTT+GGG | + | chr7.1:80831990-80832009 | None:intergenic | 45.0% | |
| CTGTTGTTATCTGCTGCAGT+GGG | - | chr7.1:80831820-80831839 | MS.gene021954:CDS | 45.0% | |
| CTTTACACTAGATTTGCCCC+AGG | + | chr7.1:80832668-80832687 | None:intergenic | 45.0% | |
| GAAGGTCTCACAAAATGGGT+AGG | - | chr7.1:80832012-80832031 | MS.gene021954:CDS | 45.0% | |
| GATACAGCCAGTCAAGATCA+AGG | + | chr7.1:80831705-80831724 | None:intergenic | 45.0% | |
| GCACTTGGTTTACCCTTCTA+TGG | - | chr7.1:80832060-80832079 | MS.gene021954:CDS | 45.0% | |
| GCAGCAGATAACAACAGTAC+CGG | + | chr7.1:80831817-80831836 | None:intergenic | 45.0% | |
| GGCCAATTTAGTGCAGATGA+AGG | - | chr7.1:80831994-80832013 | MS.gene021954:CDS | 45.0% | |
| TCTGCACTAAATTGGCCAGT+TGG | + | chr7.1:80831991-80832010 | None:intergenic | 45.0% | |
| TGACCTGGGTAGTACTTCAA+TGG | + | chr7.1:80831865-80831884 | None:intergenic | 45.0% | |
| TGAGGAGAGTGGAAATCAAG+AGG | + | chr7.1:80831312-80831331 | None:intergenic | 45.0% | |
| TTGCTTGGCATAAGCAACCT+TGG | + | chr7.1:80832277-80832296 | None:intergenic | 45.0% | |
| TTGGAGAATCATGAGGAGAG+TGG | + | chr7.1:80831323-80831342 | None:intergenic | 45.0% | |
| ! | ACTCCATTGAAGTACTACCC+AGG | - | chr7.1:80831859-80831878 | MS.gene021954:CDS | 45.0% |
| ! | GCTCCTTTGAAAAACCCAAC+TGG | - | chr7.1:80831973-80831992 | MS.gene021954:CDS | 45.0% |
| ! | TTTTGCAGCTTCTCAAGCCT+GGG | - | chr7.1:80832648-80832667 | MS.gene021954:CDS | 45.0% |
| ! | TTTTTGCAGCTTCTCAAGCC+TGG | - | chr7.1:80832647-80832666 | MS.gene021954:CDS | 45.0% |
| !! | AAGATTTTCGGCTACTGGCT+TGG | + | chr7.1:80831636-80831655 | None:intergenic | 45.0% |
| !! | GTTGGGTTTTTCAAAGGAGC+GGG | + | chr7.1:80831973-80831992 | None:intergenic | 45.0% |
| !! | TGGCCAGTTGGGTTTTTCAA+AGG | + | chr7.1:80831979-80831998 | None:intergenic | 45.0% |
| ACTAGGGGCAGTGAAGTACA+AGG | - | chr7.1:80832143-80832162 | MS.gene021954:CDS | 50.0% | |
| AGTAAAGCTACGCAGGGACT+AGG | - | chr7.1:80832126-80832145 | MS.gene021954:CDS | 50.0% | |
| GTAAAGCTACGCAGGGACTA+GGG | - | chr7.1:80832127-80832146 | MS.gene021954:CDS | 50.0% | |
| GTTGTGGCTATAGTCACACC+AGG | - | chr7.1:80832691-80832710 | MS.gene021954:CDS | 50.0% | |
| TAAAGCTACGCAGGGACTAG+GGG | - | chr7.1:80832128-80832147 | MS.gene021954:CDS | 50.0% | |
| TTGTTATCTGCTGCAGTGGG+TGG | - | chr7.1:80831823-80831842 | MS.gene021954:CDS | 50.0% | |
| TTTGCAGCTTCTCAAGCCTG+GGG | - | chr7.1:80832649-80832668 | MS.gene021954:CDS | 50.0% | |
| ! | TCCATGGCCTTGATCTTGAC+TGG | - | chr7.1:80831695-80831714 | MS.gene021954:intron | 50.0% |
| !! | ACTGGCTTGGCTAGACATGT+TGG | + | chr7.1:80831623-80831642 | None:intergenic | 50.0% |
| !! | TAACAACAGTACCGGCTTGC+CGG | + | chr7.1:80831809-80831828 | None:intergenic | 50.0% |
| GCCAGTCAAGATCAAGGCCA+TGG | + | chr7.1:80831699-80831718 | None:intergenic | 55.0% | |
| GCGGGTGGTTGTGTTTGAGT+TGG | + | chr7.1:80831955-80831974 | None:intergenic | 55.0% | |
| !! | GGGTTTTTCAAAGGAGCGGG+TGG | + | chr7.1:80831970-80831989 | None:intergenic | 55.0% |
| GCCGCAGAGTCTAGGAGTTC+CGG | - | chr7.1:80831787-80831806 | MS.gene021954:CDS | 60.0% | |
| GCCGGAACTCCTAGACTCTG+CGG | + | chr7.1:80831791-80831810 | None:intergenic | 60.0% | |
| GTCTAGGAGTTCCGGCAAGC+CGG | - | chr7.1:80831795-80831814 | MS.gene021954:CDS | 60.0% | |
| TACAGCGTGGAGAGCTGCTG+TGG | - | chr7.1:80831765-80831784 | MS.gene021954:CDS | 60.0% | |
| CTGCTGTGGCCGCAGAGTCT+AGG | - | chr7.1:80831779-80831798 | MS.gene021954:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 80831283 | 80832792 | 80831283 | ID=MS.gene021954 |
| chr7.1 | mRNA | 80831283 | 80832792 | 80831283 | ID=MS.gene021954.t1;Parent=MS.gene021954 |
| chr7.1 | exon | 80831712 | 80832792 | 80831712 | ID=MS.gene021954.t1.exon1;Parent=MS.gene021954.t1 |
| chr7.1 | CDS | 80831712 | 80832792 | 80831712 | ID=cds.MS.gene021954.t1;Parent=MS.gene021954.t1 |
| chr7.1 | exon | 80831363 | 80831419 | 80831363 | ID=MS.gene021954.t1.exon2;Parent=MS.gene021954.t1 |
| chr7.1 | CDS | 80831363 | 80831419 | 80831363 | ID=cds.MS.gene021954.t1;Parent=MS.gene021954.t1 |
| chr7.1 | exon | 80831283 | 80831299 | 80831283 | ID=MS.gene021954.t1.exon3;Parent=MS.gene021954.t1 |
| chr7.1 | CDS | 80831283 | 80831299 | 80831283 | ID=cds.MS.gene021954.t1;Parent=MS.gene021954.t1 |
| Gene Sequence |
| Protein sequence |
