Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57747.t1 | PNY09053.1 | 88.5 | 358 | 40 | 1 | 1 | 357 | 1 | 358 | 1.70E-179 | 638.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57747.t1 | O81862 | 50.4 | 365 | 165 | 7 | 11 | 364 | 9 | 368 | 9.1e-89 | 328.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57747.t1 | A0A2K3P1D5 | 88.5 | 358 | 40 | 1 | 1 | 357 | 1 | 358 | 1.2e-179 | 638.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene72024 | MS.gene57747 | PPI |
| MS.gene40256 | MS.gene57747 | PPI |
| MS.gene40705 | MS.gene57747 | PPI |
| MS.gene021944 | MS.gene57747 | PPI |
| MS.gene40707 | MS.gene57747 | PPI |
| MS.gene041428 | MS.gene57747 | PPI |
| MS.gene58750 | MS.gene57747 | PPI |
| MS.gene055584 | MS.gene57747 | PPI |
| MS.gene014609 | MS.gene57747 | PPI |
| MS.gene44679 | MS.gene57747 | PPI |
| MS.gene40257 | MS.gene57747 | PPI |
| MS.gene44682 | MS.gene57747 | PPI |
| MS.gene014611 | MS.gene57747 | PPI |
| MS.gene014610 | MS.gene57747 | PPI |
| MS.gene72022 | MS.gene57747 | PPI |
| MS.gene40255 | MS.gene57747 | PPI |
| MS.gene72023 | MS.gene57747 | PPI |
| MS.gene021954 | MS.gene57747 | PPI |
| MS.gene53841 | MS.gene57747 | PPI |
| MS.gene43244 | MS.gene57747 | PPI |
| MS.gene57747 | MS.gene021954 | PPI |
| MS.gene40706 | MS.gene57747 | PPI |
| MS.gene036626 | MS.gene57747 | PPI |
| MS.gene48549 | MS.gene57747 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57747.t1 | MTR_3g110280 | 85.794 | 359 | 49 | 1 | 1 | 357 | 1 | 359 | 0.0 | 623 |
| MS.gene57747.t1 | MTR_4g116920 | 86.908 | 359 | 32 | 2 | 1 | 358 | 1 | 345 | 0.0 | 620 |
| MS.gene57747.t1 | MTR_3g110320 | 80.992 | 363 | 68 | 1 | 1 | 362 | 1 | 363 | 0.0 | 607 |
| MS.gene57747.t1 | MTR_3g110320 | 81.058 | 359 | 67 | 1 | 1 | 358 | 1 | 359 | 0.0 | 600 |
| MS.gene57747.t1 | MTR_1g013150 | 37.079 | 356 | 204 | 6 | 22 | 362 | 32 | 382 | 1.61e-69 | 223 |
| MS.gene57747.t1 | MTR_4g117000 | 35.838 | 346 | 207 | 7 | 30 | 363 | 35 | 377 | 7.51e-64 | 208 |
| MS.gene57747.t1 | MTR_4g116990 | 38.375 | 357 | 187 | 9 | 30 | 363 | 37 | 383 | 2.36e-62 | 204 |
| MS.gene57747.t1 | MTR_4g117020 | 35.013 | 377 | 218 | 10 | 3 | 363 | 2 | 367 | 2.03e-61 | 210 |
| MS.gene57747.t1 | MTR_4g117040 | 37.465 | 355 | 196 | 9 | 26 | 363 | 24 | 369 | 2.90e-61 | 210 |
| MS.gene57747.t1 | MTR_4g117030 | 36.499 | 337 | 189 | 9 | 41 | 361 | 1 | 328 | 1.16e-58 | 202 |
| MS.gene57747.t1 | MTR_4g117800 | 36.364 | 176 | 107 | 2 | 6 | 179 | 4 | 176 | 1.71e-24 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57747.t1 | AT4G19810 | 51.913 | 366 | 158 | 7 | 11 | 364 | 9 | 368 | 4.47e-119 | 350 |
| MS.gene57747.t1 | AT4G19810 | 51.913 | 366 | 158 | 7 | 11 | 364 | 9 | 368 | 4.47e-119 | 350 |
| MS.gene57747.t1 | AT4G19820 | 46.978 | 364 | 181 | 6 | 10 | 364 | 6 | 366 | 2.11e-102 | 306 |
| MS.gene57747.t1 | AT4G19760 | 46.092 | 371 | 171 | 10 | 17 | 363 | 1 | 366 | 2.63e-95 | 288 |
| MS.gene57747.t1 | AT4G19750 | 45.658 | 357 | 175 | 9 | 17 | 359 | 1 | 352 | 1.82e-93 | 283 |
| MS.gene57747.t1 | AT4G19800 | 45.882 | 340 | 171 | 6 | 29 | 359 | 6 | 341 | 1.28e-92 | 283 |
| MS.gene57747.t1 | AT4G19720 | 46.319 | 326 | 162 | 6 | 46 | 364 | 33 | 352 | 1.65e-89 | 273 |
| MS.gene57747.t1 | AT4G19730 | 41.593 | 339 | 166 | 8 | 17 | 330 | 1 | 332 | 6.40e-71 | 225 |
| MS.gene57747.t1 | AT4G19770 | 41.538 | 260 | 142 | 4 | 112 | 363 | 1 | 258 | 5.39e-58 | 189 |
| MS.gene57747.t1 | AT4G19740 | 37.173 | 191 | 106 | 5 | 135 | 315 | 24 | 210 | 1.80e-29 | 113 |
Find 95 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCAATAGCCACCTTTAA+TGG | 0.214652 | 8.3:-9174103 | None:intergenic |
| GTTACTAATTATTGCTTCAT+AGG | 0.237729 | 8.3:+9174936 | MS.gene57747:CDS |
| TCCCACCACCAATTGATAAT+AGG | 0.244910 | 8.3:-9174299 | None:intergenic |
| GCCAAGCAAAATGGTTTGTT+TGG | 0.270489 | 8.3:+9175014 | MS.gene57747:CDS |
| CCCACCACCAATTGATAATA+GGG | 0.272819 | 8.3:-9174298 | None:intergenic |
| ACCACAAACGCTGCCATTAA+AGG | 0.289713 | 8.3:+9174090 | MS.gene57747:CDS |
| GTTGATTATGCCAAGCAAAA+TGG | 0.313698 | 8.3:+9175005 | MS.gene57747:CDS |
| ATCAAGCTACACAGGGGCTT+GGG | 0.319160 | 8.3:+9174853 | MS.gene57747:CDS |
| CAACTTTGGTTTACTCATTA+CGG | 0.336590 | 8.3:+9174473 | MS.gene57747:CDS |
| ACCTTTAATGGCAGCGTTTG+TGG | 0.356603 | 8.3:-9174091 | None:intergenic |
| GCCGAAGAGTCTAGCAGTTC+TGG | 0.357634 | 8.3:+9174513 | MS.gene57747:CDS |
| ATATTGAACAAGACAGCAAC+TGG | 0.377045 | 8.3:+9175051 | MS.gene57747:CDS |
| ACAAAGATATAATAAATGTT+GGG | 0.382597 | 8.3:+9174886 | MS.gene57747:CDS |
| CAGCGTTTGTGGTGGATAAC+TGG | 0.392336 | 8.3:-9174080 | None:intergenic |
| CTGCCATTAAAGGTGGCTAT+TGG | 0.398685 | 8.3:+9174100 | MS.gene57747:CDS |
| TACCTTCATCTACACTGAAT+TGG | 0.403692 | 8.3:-9174722 | None:intergenic |
| TAGATGAAGGTATCACAAAA+TGG | 0.403845 | 8.3:+9174733 | MS.gene57747:CDS |
| GATCAAGCTACACAGGGGCT+TGG | 0.408064 | 8.3:+9174852 | MS.gene57747:CDS |
| GTGAAAACCCTATTATCAAT+TGG | 0.411073 | 8.3:+9174291 | MS.gene57747:CDS |
| CTCTGATCAGATCACCCCTT+TGG | 0.414677 | 8.3:+9174572 | MS.gene57747:CDS |
| TCGATGGTCTTGATCTTGAC+TGG | 0.423357 | 8.3:+9174421 | MS.gene57747:CDS |
| ATTGCTTCATAGGGACAGAT+TGG | 0.433223 | 8.3:+9174946 | MS.gene57747:CDS |
| GTCTTATCCGCGTCGGAGGA+TGG | 0.434776 | 8.3:-9174450 | None:intergenic |
| GAAGGTATCACAAAATGGAT+TGG | 0.445585 | 8.3:+9174738 | MS.gene57747:CDS |
| TTACTAATTATTGCTTCATA+GGG | 0.446458 | 8.3:+9174937 | MS.gene57747:CDS |
| GACGCGGATAAGACCAACTT+TGG | 0.447081 | 8.3:+9174459 | MS.gene57747:CDS |
| ATCACAAAATGGATTGGGTT+AGG | 0.453409 | 8.3:+9174744 | MS.gene57747:CDS |
| TACAAAGATATAATAAATGT+TGG | 0.455760 | 8.3:+9174885 | MS.gene57747:CDS |
| TATAATAAATGTTGGGGCGC+AGG | 0.456722 | 8.3:+9174893 | MS.gene57747:CDS |
| GAACAAGTGGGTGAAATAAG+AGG | 0.458120 | 8.3:-9174160 | None:intergenic |
| ACGACCTTTACATGTCAGAT+AGG | 0.459436 | 8.3:+9174652 | MS.gene57747:CDS |
| ATATTGCAAACAACTTGGAT+TGG | 0.476015 | 8.3:+9174613 | MS.gene57747:CDS |
| AAGGTATCACAAAATGGATT+GGG | 0.479422 | 8.3:+9174739 | MS.gene57747:CDS |
| TTCTGCAGCTTCTCAAGCAT+GGG | 0.481382 | 8.3:+9175643 | MS.gene57747:intron |
| TATTGCAAACAACTTGGATT+GGG | 0.481756 | 8.3:+9174614 | MS.gene57747:CDS |
| GTTGGTTGGTATTAGAATCA+AGG | 0.482451 | 8.3:-9174197 | None:intergenic |
| CGTAATGAGTAAACCAAAGT+TGG | 0.491887 | 8.3:-9174472 | None:intergenic |
| GTTATTTCTAGCAAGTTGAA+TGG | 0.492439 | 8.3:-9174394 | None:intergenic |
| TCAGGATATTGCAAACAACT+TGG | 0.496362 | 8.3:+9174608 | MS.gene57747:CDS |
| CGATGGTCTTGATCTTGACT+GGG | 0.498899 | 8.3:+9174422 | MS.gene57747:CDS |
| TTTCTGCAGCTTCTCAAGCA+TGG | 0.499088 | 8.3:+9175642 | MS.gene57747:intron |
| GCATTGGGTGTACCTTTCTA+CGG | 0.499133 | 8.3:+9174786 | MS.gene57747:CDS |
| AACCTTCACTGAAACCGTTC+AGG | 0.501026 | 8.3:+9174254 | MS.gene57747:CDS |
| TGGTGGTGGGAATTCAACTT+TGG | 0.502902 | 8.3:+9174311 | MS.gene57747:CDS |
| TGCAGCTTCTCAAGCATGGG+AGG | 0.503853 | 8.3:+9175646 | MS.gene57747:intron |
| ACCCTATTATCAATTGGTGG+TGG | 0.504311 | 8.3:+9174297 | MS.gene57747:CDS |
| TGCCTGAACGGTTTCAGTGA+AGG | 0.504697 | 8.3:-9174256 | None:intergenic |
| GCCAGAACTGCTAGACTCTT+CGG | 0.504881 | 8.3:-9174514 | None:intergenic |
| GATACCTATCTGACATGTAA+AGG | 0.511041 | 8.3:-9174656 | None:intergenic |
| AACTGGGCTCTTTCTCAAGC+AGG | 0.514071 | 8.3:+9175068 | MS.gene57747:CDS |
| TTGGAGAATCATGAGGAGAG+TGG | 0.515988 | 8.3:-9174055 | None:intergenic |
| GGCTATTGGAATTCTGATAG+TGG | 0.524115 | 8.3:+9174114 | MS.gene57747:CDS |
| TACCTTTCTACGGTTTCAAG+TGG | 0.524260 | 8.3:+9174796 | MS.gene57747:CDS |
| GCAATAATTAGTAACATATG+TGG | 0.528980 | 8.3:-9174928 | None:intergenic |
| TCTACACTGAATTGGCCTGT+TGG | 0.531450 | 8.3:-9174714 | None:intergenic |
| CCCTATTATCAATTGGTGGT+GGG | 0.533806 | 8.3:+9174298 | MS.gene57747:CDS |
| GACCTGGGTAGTATTCCAAA+GGG | 0.538829 | 8.3:-9174587 | None:intergenic |
| CTCCACTTGAAACCGTAGAA+AGG | 0.540691 | 8.3:-9174798 | None:intergenic |
| CGTTCAGGCAAAGAGTAGTT+CGG | 0.545594 | 8.3:+9174269 | MS.gene57747:CDS |
| TTGTTTGCAATATCCTGACC+TGG | 0.547851 | 8.3:-9174603 | None:intergenic |
| TTGTTATCTGCTGCAGTGGG+TGG | 0.559981 | 8.3:+9174549 | MS.gene57747:CDS |
| CGAACTACTCTTTGCCTGAA+CGG | 0.560291 | 8.3:-9174268 | None:intergenic |
| CAGCAAATGCACAGAACAAG+TGG | 0.562193 | 8.3:-9174173 | None:intergenic |
| TTGCTTGGCATAATCAACCT+TGG | 0.564771 | 8.3:-9175000 | None:intergenic |
| TTTGGAATACTACCCAGGTC+AGG | 0.567695 | 8.3:+9174590 | MS.gene57747:CDS |
| GTTGGTCTTATCCGCGTCGG+AGG | 0.568312 | 8.3:-9174454 | None:intergenic |
| TCAAGCTACACAGGGGCTTG+GGG | 0.574229 | 8.3:+9174854 | MS.gene57747:CDS |
| AACAAGTGGGTGAAATAAGA+GGG | 0.575691 | 8.3:-9174159 | None:intergenic |
| TACGGAGTGGAGAGCTGCTG+TGG | 0.585644 | 8.3:+9174491 | MS.gene57747:CDS |
| GGCCAATTCAGTGTAGATGA+AGG | 0.587139 | 8.3:+9174720 | MS.gene57747:CDS |
| TTGTGGTGGATAACTGGAGT+TGG | 0.587390 | 8.3:-9174074 | None:intergenic |
| CACTCAGAGTATATCTGCCA+AGG | 0.587655 | 8.3:+9174983 | MS.gene57747:CDS |
| TGACCTGGGTAGTATTCCAA+AGG | 0.587785 | 8.3:-9174588 | None:intergenic |
| CAAAGATATAATAAATGTTG+GGG | 0.588056 | 8.3:+9174887 | MS.gene57747:CDS |
| AAAACCCTATTATCAATTGG+TGG | 0.588303 | 8.3:+9174294 | MS.gene57747:CDS |
| TTTAATGGCAGCGTTTGTGG+TGG | 0.594547 | 8.3:-9174088 | None:intergenic |
| ACCCCTTTGGAATACTACCC+AGG | 0.599496 | 8.3:+9174585 | MS.gene57747:CDS |
| AGAAGAAATAGTGAGTTGGT+TGG | 0.600058 | 8.3:-9174211 | None:intergenic |
| CTGTTGTTATCTGCTGCAGT+GGG | 0.603516 | 8.3:+9174546 | MS.gene57747:CDS |
| TGAGGAGAGTGGAAATCAAG+AGG | 0.606133 | 8.3:-9174044 | None:intergenic |
| TTCATAGGGACAGATTGGTA+TGG | 0.610823 | 8.3:+9174951 | MS.gene57747:CDS |
| ACTGTTGTTATCTGCTGCAG+TGG | 0.613628 | 8.3:+9174545 | MS.gene57747:CDS |
| GCTAGAAATAACAACTTCGA+TGG | 0.620728 | 8.3:+9174405 | MS.gene57747:CDS |
| TTGTAGAAGAAATAGTGAGT+TGG | 0.631938 | 8.3:-9174215 | None:intergenic |
| GCAGCAGATAACAACAGTGT+CGG | 0.646329 | 8.3:-9174540 | None:intergenic |
| GATCAATGTCAGAAACTGCA+AGG | 0.646791 | 8.3:-9174137 | None:intergenic |
| TGTTTGCAATATCCTGACCT+GGG | 0.647942 | 8.3:-9174602 | None:intergenic |
| TTGGTTTACTCATTACGGAG+TGG | 0.651665 | 8.3:+9174478 | MS.gene57747:CDS |
| AAAGTTGGTCTTATCCGCGT+CGG | 0.662235 | 8.3:-9174457 | None:intergenic |
| ACTGGAGTTGGAGAATCATG+AGG | 0.662538 | 8.3:-9174062 | None:intergenic |
| ACAAACGCTGCCATTAAAGG+TGG | 0.669351 | 8.3:+9174093 | MS.gene57747:CDS |
| TATTGAACAAGACAGCAACT+GGG | 0.675280 | 8.3:+9175052 | MS.gene57747:CDS |
| AGCAAATGCACAGAACAAGT+GGG | 0.684809 | 8.3:-9174172 | None:intergenic |
| ACCTGGGTAGTATTCCAAAG+GGG | 0.736054 | 8.3:-9174586 | None:intergenic |
| GGAGTATCCATCCTCCGACG+CGG | 0.742661 | 8.3:+9174443 | MS.gene57747:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAGATATAATAAATGTT+GGG | + | chr8.3:9174886-9174905 | MS.gene57747:CDS | 15.0% |
| !! | CTACTTATTATATAATCATA+CGG | + | chr8.3:9175129-9175148 | MS.gene57747:intron | 15.0% |
| !! | TACAAAGATATAATAAATGT+TGG | + | chr8.3:9174885-9174904 | MS.gene57747:CDS | 15.0% |
| !! | TGATTATATAATAAGTAGAA+CGG | - | chr8.3:9175127-9175146 | None:intergenic | 15.0% |
| !! | TTTAGACCTATATATTTATT+CGG | + | chr8.3:9175469-9175488 | MS.gene57747:intron | 15.0% |
| !!! | TTGTTTGTTTGTTTTTTATA+TGG | + | chr8.3:9175158-9175177 | MS.gene57747:intron | 15.0% |
| !! | CAAAGATATAATAAATGTTG+GGG | + | chr8.3:9174887-9174906 | MS.gene57747:CDS | 20.0% |
| !! | TCAAAAATTTCATGGTTATT+AGG | - | chr8.3:9174834-9174853 | None:intergenic | 20.0% |
| !! | TTACTAATTATTGCTTCATA+GGG | + | chr8.3:9174937-9174956 | MS.gene57747:CDS | 20.0% |
| !!! | CTATCTATCTTTTTTGATAT+GGG | - | chr8.3:9175530-9175549 | None:intergenic | 20.0% |
| !!! | TCTATCTATCTTTTTTGATA+TGG | - | chr8.3:9175531-9175550 | None:intergenic | 20.0% |
| ! | GCAATAATTAGTAACATATG+TGG | - | chr8.3:9174931-9174950 | None:intergenic | 25.0% |
| ! | GTTACTAATTATTGCTTCAT+AGG | + | chr8.3:9174936-9174955 | MS.gene57747:CDS | 25.0% |
| ! | TAGCTTGATCAAAAATTTCA+TGG | - | chr8.3:9174842-9174861 | None:intergenic | 25.0% |
| !! | AAGAATCTATGAACGATTTT+CGG | - | chr8.3:9174374-9174393 | None:intergenic | 25.0% |
| !! | ATATGGCTAACTTCAAATTT+TGG | + | chr8.3:9175175-9175194 | MS.gene57747:intron | 25.0% |
| !!! | CTAACTTCAAATTTTGGTTT+AGG | + | chr8.3:9175181-9175200 | MS.gene57747:intron | 25.0% |
| AAAACCCTATTATCAATTGG+TGG | + | chr8.3:9174294-9174313 | MS.gene57747:CDS | 30.0% | |
| ATATTGCAAACAACTTGGAT+TGG | + | chr8.3:9174613-9174632 | MS.gene57747:CDS | 30.0% | |
| ATCAGTAGTATATCACCATT+CGG | + | chr8.3:9175295-9175314 | MS.gene57747:intron | 30.0% | |
| GAAATGGCATTAAGAATAAG+AGG | - | chr8.3:9175576-9175595 | None:intergenic | 30.0% | |
| GAATAAGAGGTAAAACTCTA+AGG | - | chr8.3:9175563-9175582 | None:intergenic | 30.0% | |
| GTGAAAACCCTATTATCAAT+TGG | + | chr8.3:9174291-9174310 | MS.gene57747:CDS | 30.0% | |
| TATTGCAAACAACTTGGATT+GGG | + | chr8.3:9174614-9174633 | MS.gene57747:CDS | 30.0% | |
| TTGTAGAAGAAATAGTGAGT+TGG | - | chr8.3:9174218-9174237 | None:intergenic | 30.0% | |
| ! | AAGGTATCACAAAATGGATT+GGG | + | chr8.3:9174739-9174758 | MS.gene57747:CDS | 30.0% |
| ! | AATTTTTGATCAAGCTACAC+AGG | + | chr8.3:9174845-9174864 | MS.gene57747:CDS | 30.0% |
| ! | ACCGGTTTAACCAATTTAAA+AGG | - | chr8.3:9175324-9175343 | None:intergenic | 30.0% |
| ! | ATTTTTGATCAAGCTACACA+GGG | + | chr8.3:9174846-9174865 | MS.gene57747:CDS | 30.0% |
| ! | CAACTTTGGTTTACTCATTA+CGG | + | chr8.3:9174473-9174492 | MS.gene57747:CDS | 30.0% |
| ! | GCCTTTTAAATTGGTTAAAC+CGG | + | chr8.3:9175320-9175339 | MS.gene57747:intron | 30.0% |
| ! | GTTTGTTTGGATATTTTGCT+TGG | + | chr8.3:9175027-9175046 | MS.gene57747:CDS | 30.0% |
| !! | GGCAAAAAAATTTGCTGATA+TGG | + | chr8.3:9174332-9174351 | MS.gene57747:CDS | 30.0% |
| !! | GTTATTTCTAGCAAGTTGAA+TGG | - | chr8.3:9174397-9174416 | None:intergenic | 30.0% |
| !! | TAGATGAAGGTATCACAAAA+TGG | + | chr8.3:9174733-9174752 | MS.gene57747:CDS | 30.0% |
| AACAAGTGGGTGAAATAAGA+GGG | - | chr8.3:9174162-9174181 | None:intergenic | 35.0% | |
| AGCGGTAATTAACTACTGAT+GGG | + | chr8.3:9175357-9175376 | MS.gene57747:intron | 35.0% | |
| ATATTGAACAAGACAGCAAC+TGG | + | chr8.3:9175051-9175070 | MS.gene57747:CDS | 35.0% | |
| ATCATAGCGAGTCATTCTAA+TGG | + | chr8.3:9175603-9175622 | MS.gene57747:intron | 35.0% | |
| ATTCCAATAGCCACCTTTAA+TGG | - | chr8.3:9174106-9174125 | None:intergenic | 35.0% | |
| CCAAAAAGCAAACTAGCATT+GGG | + | chr8.3:9174771-9174790 | MS.gene57747:CDS | 35.0% | |
| CGCTATGATACAGTTTGAAA+TGG | - | chr8.3:9175592-9175611 | None:intergenic | 35.0% | |
| CGTAATGAGTAAACCAAAGT+TGG | - | chr8.3:9174475-9174494 | None:intergenic | 35.0% | |
| GAACGGAGCTATGTTTAATT+AGG | - | chr8.3:9175110-9175129 | None:intergenic | 35.0% | |
| GAATGGTGATATACTACTGA+TGG | - | chr8.3:9175296-9175315 | None:intergenic | 35.0% | |
| GATACCTATCTGACATGTAA+AGG | - | chr8.3:9174659-9174678 | None:intergenic | 35.0% | |
| GCTAGAAATAACAACTTCGA+TGG | + | chr8.3:9174405-9174424 | MS.gene57747:CDS | 35.0% | |
| GGTTTAGGCCTATATTTGTT+GGG | + | chr8.3:9175196-9175215 | MS.gene57747:intron | 35.0% | |
| GTTGATTATGCCAAGCAAAA+TGG | + | chr8.3:9175005-9175024 | MS.gene57747:CDS | 35.0% | |
| TACCTTCATCTACACTGAAT+TGG | - | chr8.3:9174725-9174744 | None:intergenic | 35.0% | |
| TATTGAACAAGACAGCAACT+GGG | + | chr8.3:9175052-9175071 | MS.gene57747:CDS | 35.0% | |
| TCAGGATATTGCAAACAACT+TGG | + | chr8.3:9174608-9174627 | MS.gene57747:CDS | 35.0% | |
| TCCAAAAAGCAAACTAGCAT+TGG | + | chr8.3:9174770-9174789 | MS.gene57747:CDS | 35.0% | |
| TGGTTTAGGCCTATATTTGT+TGG | + | chr8.3:9175195-9175214 | MS.gene57747:intron | 35.0% | |
| ! | AATTAACTACCGTTCGAGTT+AGG | + | chr8.3:9175391-9175410 | MS.gene57747:intron | 35.0% |
| ! | CAAGAGGAATGAATGCTTTT+TGG | - | chr8.3:9174031-9174050 | None:intergenic | 35.0% |
| ! | CATTCGGATGCCTTTTAAAT+TGG | + | chr8.3:9175311-9175330 | MS.gene57747:intron | 35.0% |
| ! | GTTGGTTGGTATTAGAATCA+AGG | - | chr8.3:9174200-9174219 | None:intergenic | 35.0% |
| ! | TCCAAACAAACCATTTTGCT+TGG | - | chr8.3:9175018-9175037 | None:intergenic | 35.0% |
| ! | TTTTTGATCAAGCTACACAG+GGG | + | chr8.3:9174847-9174866 | MS.gene57747:CDS | 35.0% |
| !! | AAAAGTATCCCTTGGGAATA+GGG | - | chr8.3:9175499-9175518 | None:intergenic | 35.0% |
| !! | AATTGACCAAAAGTATCCCT+TGG | - | chr8.3:9175507-9175526 | None:intergenic | 35.0% |
| !! | AGAAGAAATAGTGAGTTGGT+TGG | - | chr8.3:9174214-9174233 | None:intergenic | 35.0% |
| !! | ATCACAAAATGGATTGGGTT+AGG | + | chr8.3:9174744-9174763 | MS.gene57747:CDS | 35.0% |
| !! | ATTGACCAAAAGTATCCCTT+GGG | - | chr8.3:9175506-9175525 | None:intergenic | 35.0% |
| !! | CAATTTAAAAGGCATCCGAA+TGG | - | chr8.3:9175313-9175332 | None:intergenic | 35.0% |
| !! | GAAGGTATCACAAAATGGAT+TGG | + | chr8.3:9174738-9174757 | MS.gene57747:CDS | 35.0% |
| ACCCTATTATCAATTGGTGG+TGG | + | chr8.3:9174297-9174316 | MS.gene57747:CDS | 40.0% | |
| ACGACCTTTACATGTCAGAT+AGG | + | chr8.3:9174652-9174671 | MS.gene57747:CDS | 40.0% | |
| AGCAAATGCACAGAACAAGT+GGG | - | chr8.3:9174175-9174194 | None:intergenic | 40.0% | |
| ATCCCAAGAGATTGCTCTTT+AGG | - | chr8.3:9175440-9175459 | None:intergenic | 40.0% | |
| ATTGCTTCATAGGGACAGAT+TGG | + | chr8.3:9174946-9174965 | MS.gene57747:CDS | 40.0% | |
| CCGGTTTAAAAAGTGATGAG+CGG | + | chr8.3:9175339-9175358 | MS.gene57747:intron | 40.0% | |
| GAACAAGTGGGTGAAATAAG+AGG | - | chr8.3:9174163-9174182 | None:intergenic | 40.0% | |
| GAGCGGTAATTAACTACTGA+TGG | + | chr8.3:9175356-9175375 | MS.gene57747:intron | 40.0% | |
| GATCAATGTCAGAAACTGCA+AGG | - | chr8.3:9174140-9174159 | None:intergenic | 40.0% | |
| GCGGTAATTAACTACTGATG+GGG | + | chr8.3:9175358-9175377 | MS.gene57747:intron | 40.0% | |
| GGCTATTGGAATTCTGATAG+TGG | + | chr8.3:9174114-9174133 | MS.gene57747:CDS | 40.0% | |
| GGTCGGCCGAATAAATATAT+AGG | - | chr8.3:9175478-9175497 | None:intergenic | 40.0% | |
| TACCTTTCTACGGTTTCAAG+TGG | + | chr8.3:9174796-9174815 | MS.gene57747:CDS | 40.0% | |
| TATAATAAATGTTGGGGCGC+AGG | + | chr8.3:9174893-9174912 | MS.gene57747:CDS | 40.0% | |
| TCCTTAATCCCATGAGGATA+GGG | - | chr8.3:9175226-9175245 | None:intergenic | 40.0% | |
| TGCCTAAAGAGCAATCTCTT+GGG | + | chr8.3:9175435-9175454 | MS.gene57747:intron | 40.0% | |
| TGGTGATATACTACTGATGG+CGG | - | chr8.3:9175293-9175312 | None:intergenic | 40.0% | |
| TGTTTGCAATATCCTGACCT+GGG | - | chr8.3:9174605-9174624 | None:intergenic | 40.0% | |
| TTCACCTAGCAATTTCTCAC+AGG | + | chr8.3:9175254-9175273 | MS.gene57747:intron | 40.0% | |
| TTCATAGGGACAGATTGGTA+TGG | + | chr8.3:9174951-9174970 | MS.gene57747:CDS | 40.0% | |
| TTCCTTAATCCCATGAGGAT+AGG | - | chr8.3:9175227-9175246 | None:intergenic | 40.0% | |
| TTGCTTGGCATAATCAACCT+TGG | - | chr8.3:9175003-9175022 | None:intergenic | 40.0% | |
| TTGGTTTACTCATTACGGAG+TGG | + | chr8.3:9174478-9174497 | MS.gene57747:CDS | 40.0% | |
| TTGTTTGCAATATCCTGACC+TGG | - | chr8.3:9174606-9174625 | None:intergenic | 40.0% | |
| ! | CCCACCACCAATTGATAATA+GGG | - | chr8.3:9174301-9174320 | None:intergenic | 40.0% |
| ! | CCCTATTATCAATTGGTGGT+GGG | + | chr8.3:9174298-9174317 | MS.gene57747:CDS | 40.0% |
| ! | CTATTCCCAAGGGATACTTT+TGG | + | chr8.3:9175498-9175517 | MS.gene57747:intron | 40.0% |
| ! | GCTCCTTTGAAAAATCCAAC+AGG | + | chr8.3:9174699-9174718 | MS.gene57747:CDS | 40.0% |
| ! | TATGAACGATTTTCGGCTAC+TGG | - | chr8.3:9174367-9174386 | None:intergenic | 40.0% |
| ! | TCCCACCACCAATTGATAAT+AGG | - | chr8.3:9174302-9174321 | None:intergenic | 40.0% |
| !! | CAAAAGTATCCCTTGGGAAT+AGG | - | chr8.3:9175500-9175519 | None:intergenic | 40.0% |
| !! | GCCAAGCAAAATGGTTTGTT+TGG | + | chr8.3:9175014-9175033 | MS.gene57747:CDS | 40.0% |
| !! | GTTGGATTTTTCAAAGGAGC+AGG | - | chr8.3:9174699-9174718 | None:intergenic | 40.0% |
| !! | TGGCCTGTTGGATTTTTCAA+AGG | - | chr8.3:9174705-9174724 | None:intergenic | 40.0% |
| !!! | CCCAATGCTAGTTTGCTTTT+TGG | - | chr8.3:9174774-9174793 | None:intergenic | 40.0% |
| !!! | CCGCTCATCACTTTTTAAAC+CGG | - | chr8.3:9175342-9175361 | None:intergenic | 40.0% |
| AACCTTCACTGAAACCGTTC+AGG | + | chr8.3:9174254-9174273 | MS.gene57747:CDS | 45.0% | |
| ACAAACGCTGCCATTAAAGG+TGG | + | chr8.3:9174093-9174112 | MS.gene57747:CDS | 45.0% | |
| ACCACAAACGCTGCCATTAA+AGG | + | chr8.3:9174090-9174109 | MS.gene57747:CDS | 45.0% | |
| ACCCTATCCTCATGGGATTA+AGG | + | chr8.3:9175222-9175241 | MS.gene57747:intron | 45.0% | |
| ACCTGGGTAGTATTCCAAAG+GGG | - | chr8.3:9174589-9174608 | None:intergenic | 45.0% | |
| ACCTTTAATGGCAGCGTTTG+TGG | - | chr8.3:9174094-9174113 | None:intergenic | 45.0% | |
| ACTGGAGTTGGAGAATCATG+AGG | - | chr8.3:9174065-9174084 | None:intergenic | 45.0% | |
| ACTGTTGTTATCTGCTGCAG+TGG | + | chr8.3:9174545-9174564 | MS.gene57747:CDS | 45.0% | |
| AGGGTCAGCCCAACAAATAT+AGG | - | chr8.3:9175207-9175226 | None:intergenic | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | + | chr8.3:9174983-9175002 | MS.gene57747:CDS | 45.0% | |
| CAGCAAATGCACAGAACAAG+TGG | - | chr8.3:9174176-9174195 | None:intergenic | 45.0% | |
| CGAACTACTCTTTGCCTGAA+CGG | - | chr8.3:9174271-9174290 | None:intergenic | 45.0% | |
| CGTTCAGGCAAAGAGTAGTT+CGG | + | chr8.3:9174269-9174288 | MS.gene57747:CDS | 45.0% | |
| CTCCACTTGAAACCGTAGAA+AGG | - | chr8.3:9174801-9174820 | None:intergenic | 45.0% | |
| CTGCCATTAAAGGTGGCTAT+TGG | + | chr8.3:9174100-9174119 | MS.gene57747:CDS | 45.0% | |
| CTGTTGTTATCTGCTGCAGT+GGG | + | chr8.3:9174546-9174565 | MS.gene57747:CDS | 45.0% | |
| GACCTGGGTAGTATTCCAAA+GGG | - | chr8.3:9174590-9174609 | None:intergenic | 45.0% | |
| GCAACTTCCTTAATCCCATG+AGG | - | chr8.3:9175232-9175251 | None:intergenic | 45.0% | |
| GCAGCAGATAACAACAGTGT+CGG | - | chr8.3:9174543-9174562 | None:intergenic | 45.0% | |
| GCATTGGGTGTACCTTTCTA+CGG | + | chr8.3:9174786-9174805 | MS.gene57747:CDS | 45.0% | |
| GGCCAATTCAGTGTAGATGA+AGG | + | chr8.3:9174720-9174739 | MS.gene57747:CDS | 45.0% | |
| GGTGATATACTACTGATGGC+GGG | - | chr8.3:9175292-9175311 | None:intergenic | 45.0% | |
| GTGCCTAAAGAGCAATCTCT+TGG | + | chr8.3:9175434-9175453 | MS.gene57747:intron | 45.0% | |
| TCACATGCACCTAACTCGAA+CGG | - | chr8.3:9175403-9175422 | None:intergenic | 45.0% | |
| TGACCTGGGTAGTATTCCAA+AGG | - | chr8.3:9174591-9174610 | None:intergenic | 45.0% | |
| TGAGGAGAGTGGAAATCAAG+AGG | - | chr8.3:9174047-9174066 | None:intergenic | 45.0% | |
| TTCTGCAGCTTCTCAAGCAT+GGG | + | chr8.3:9175643-9175662 | MS.gene57747:intron | 45.0% | |
| TTGGAGAATCATGAGGAGAG+TGG | - | chr8.3:9174058-9174077 | None:intergenic | 45.0% | |
| TTTAATGGCAGCGTTTGTGG+TGG | - | chr8.3:9174091-9174110 | None:intergenic | 45.0% | |
| TTTCTGCAGCTTCTCAAGCA+TGG | + | chr8.3:9175642-9175661 | MS.gene57747:intron | 45.0% | |
| ! | CGATGGTCTTGATCTTGACT+GGG | + | chr8.3:9174422-9174441 | MS.gene57747:CDS | 45.0% |
| ! | GTGATATACTACTGATGGCG+GGG | - | chr8.3:9175291-9175310 | None:intergenic | 45.0% |
| ! | TCGATGGTCTTGATCTTGAC+TGG | + | chr8.3:9174421-9174440 | MS.gene57747:CDS | 45.0% |
| ! | TCTACACTGAATTGGCCTGT+TGG | - | chr8.3:9174717-9174736 | None:intergenic | 45.0% |
| ! | TTTGGAATACTACCCAGGTC+AGG | + | chr8.3:9174590-9174609 | MS.gene57747:CDS | 45.0% |
| !! | AAAGTTGGTCTTATCCGCGT+CGG | - | chr8.3:9174460-9174479 | None:intergenic | 45.0% |
| !! | GGATTTTTCAAAGGAGCAGG+TGG | - | chr8.3:9174696-9174715 | None:intergenic | 45.0% |
| !! | TGGTGGTGGGAATTCAACTT+TGG | + | chr8.3:9174311-9174330 | MS.gene57747:CDS | 45.0% |
| !! | TTGTGGTGGATAACTGGAGT+TGG | - | chr8.3:9174077-9174096 | None:intergenic | 45.0% |
| AACTGGGCTCTTTCTCAAGC+AGG | + | chr8.3:9175068-9175087 | MS.gene57747:CDS | 50.0% | |
| ATCAAGCTACACAGGGGCTT+GGG | + | chr8.3:9174853-9174872 | MS.gene57747:CDS | 50.0% | |
| CTCTGATCAGATCACCCCTT+TGG | + | chr8.3:9174572-9174591 | MS.gene57747:CDS | 50.0% | |
| CTCTTTCTCAAGCAGGTAGG+TGG | + | chr8.3:9175075-9175094 | MS.gene57747:intron | 50.0% | |
| GACGCGGATAAGACCAACTT+TGG | + | chr8.3:9174459-9174478 | MS.gene57747:CDS | 50.0% | |
| GCCAGAACTGCTAGACTCTT+CGG | - | chr8.3:9174517-9174536 | None:intergenic | 50.0% | |
| GGTGCATGTGAGCAATTGCT+AGG | + | chr8.3:9175412-9175431 | MS.gene57747:intron | 50.0% | |
| GGTGCCTGTGAGAAATTGCT+AGG | - | chr8.3:9175261-9175280 | None:intergenic | 50.0% | |
| GTATCCCTTGGGAATAGGGT+CGG | - | chr8.3:9175495-9175514 | None:intergenic | 50.0% | |
| TGCCTGAACGGTTTCAGTGA+AGG | - | chr8.3:9174259-9174278 | None:intergenic | 50.0% | |
| TTGTTATCTGCTGCAGTGGG+TGG | + | chr8.3:9174549-9174568 | MS.gene57747:CDS | 50.0% | |
| !! | ACCCCTTTGGAATACTACCC+AGG | + | chr8.3:9174585-9174604 | MS.gene57747:CDS | 50.0% |
| !! | ACGATTTTCGGCTACTGGCT+TGG | - | chr8.3:9174362-9174381 | None:intergenic | 50.0% |
| !! | CAGCGTTTGTGGTGGATAAC+TGG | - | chr8.3:9174083-9174102 | None:intergenic | 50.0% |
| GATCAAGCTACACAGGGGCT+TGG | + | chr8.3:9174852-9174871 | MS.gene57747:CDS | 55.0% | |
| GCCGAAGAGTCTAGCAGTTC+TGG | + | chr8.3:9174513-9174532 | MS.gene57747:CDS | 55.0% | |
| GGGCTCTTTCTCAAGCAGGT+AGG | + | chr8.3:9175072-9175091 | MS.gene57747:intron | 55.0% | |
| TCAAGCTACACAGGGGCTTG+GGG | + | chr8.3:9174854-9174873 | MS.gene57747:CDS | 55.0% | |
| TGCAGCTTCTCAAGCATGGG+AGG | + | chr8.3:9175646-9175665 | MS.gene57747:intron | 55.0% | |
| TGGGCTGACCCTATCCTCAT+GGG | + | chr8.3:9175215-9175234 | MS.gene57747:intron | 55.0% | |
| TTGGGCTGACCCTATCCTCA+TGG | + | chr8.3:9175214-9175233 | MS.gene57747:intron | 55.0% | |
| !!! | TACTGATGGCGGGGCGTTTT+AGG | - | chr8.3:9175282-9175301 | None:intergenic | 55.0% |
| GTCTTATCCGCGTCGGAGGA+TGG | - | chr8.3:9174453-9174472 | None:intergenic | 60.0% | |
| TACGGAGTGGAGAGCTGCTG+TGG | + | chr8.3:9174491-9174510 | MS.gene57747:CDS | 60.0% | |
| TCGGCCGACCCTATTCCCAA+GGG | + | chr8.3:9175488-9175507 | MS.gene57747:intron | 60.0% | |
| TTCGGCCGACCCTATTCCCA+AGG | + | chr8.3:9175487-9175506 | MS.gene57747:intron | 60.0% | |
| ! | GGAGTATCCATCCTCCGACG+CGG | + | chr8.3:9174443-9174462 | MS.gene57747:CDS | 60.0% |
| !! | GTTGGTCTTATCCGCGTCGG+AGG | - | chr8.3:9174457-9174476 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 9174018 | 9175673 | 9174018 | ID=MS.gene57747 |
| chr8.3 | mRNA | 9174018 | 9175673 | 9174018 | ID=MS.gene57747.t1;Parent=MS.gene57747 |
| chr8.3 | exon | 9174018 | 9175089 | 9174018 | ID=MS.gene57747.t1.exon1;Parent=MS.gene57747.t1 |
| chr8.3 | CDS | 9174018 | 9175089 | 9174018 | ID=cds.MS.gene57747.t1;Parent=MS.gene57747.t1 |
| chr8.3 | exon | 9175651 | 9175673 | 9175651 | ID=MS.gene57747.t1.exon2;Parent=MS.gene57747.t1 |
| chr8.3 | CDS | 9175651 | 9175673 | 9175651 | ID=cds.MS.gene57747.t1;Parent=MS.gene57747.t1 |
| Gene Sequence |
| Protein sequence |
