Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055584.t1 | PNY09053.1 | 92.7 | 358 | 26 | 0 | 1 | 358 | 1 | 358 | 6.30E-190 | 673.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055584.t1 | O81862 | 51.1 | 364 | 165 | 6 | 11 | 365 | 9 | 368 | 1.2e-91 | 338.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055584.t1 | A0A2K3P1D5 | 92.7 | 358 | 26 | 0 | 1 | 358 | 1 | 358 | 4.5e-190 | 673.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055584 | MS.gene40257 | 0.847503 | 1.11E-59 | -1.69E-46 |
| MS.gene055584 | MS.gene40707 | 0.978773 | 1.56E-146 | -1.69E-46 |
| MS.gene055584 | MS.gene72024 | 0.912005 | 3.19E-83 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene055584 | MS.gene72022 | PPI |
| MS.gene055584 | MS.gene53841 | PPI |
| MS.gene055584 | MS.gene40706 | PPI |
| MS.gene055584 | MS.gene48549 | PPI |
| MS.gene055584 | MS.gene40255 | PPI |
| MS.gene055584 | MS.gene44679 | PPI |
| MS.gene055584 | MS.gene57747 | PPI |
| MS.gene055584 | MS.gene014611 | PPI |
| MS.gene055584 | MS.gene014610 | PPI |
| MS.gene055584 | MS.gene036626 | PPI |
| MS.gene055584 | MS.gene40705 | PPI |
| MS.gene055584 | MS.gene44682 | PPI |
| MS.gene055584 | MS.gene40257 | PPI |
| MS.gene055584 | MS.gene72024 | PPI |
| MS.gene055584 | MS.gene014609 | PPI |
| MS.gene40255 | MS.gene055584 | PPI |
| MS.gene055584 | MS.gene72023 | PPI |
| MS.gene055584 | MS.gene40707 | PPI |
| MS.gene055584 | MS.gene041428 | PPI |
| MS.gene055584 | MS.gene58750 | PPI |
| MS.gene055584 | MS.gene021944 | PPI |
| MS.gene53841 | MS.gene055584 | PPI |
| MS.gene055584 | MS.gene40256 | PPI |
| MS.gene055584 | MS.gene43244 | PPI |
| MS.gene40706 | MS.gene055584 | PPI |
| MS.gene055584 | MS.gene021954 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055584.t1 | MTR_3g110320 | 83.242 | 364 | 61 | 0 | 1 | 364 | 1 | 364 | 0.0 | 631 |
| MS.gene055584.t1 | MTR_3g110280 | 87.187 | 359 | 45 | 1 | 1 | 358 | 1 | 359 | 0.0 | 629 |
| MS.gene055584.t1 | MTR_3g110320 | 83.565 | 359 | 59 | 0 | 1 | 359 | 1 | 359 | 0.0 | 626 |
| MS.gene055584.t1 | MTR_4g116920 | 85.000 | 360 | 38 | 3 | 1 | 359 | 1 | 345 | 0.0 | 598 |
| MS.gene055584.t1 | MTR_1g013150 | 35.112 | 356 | 214 | 5 | 22 | 364 | 32 | 383 | 6.03e-65 | 211 |
| MS.gene055584.t1 | MTR_4g117040 | 38.040 | 347 | 188 | 9 | 30 | 359 | 28 | 364 | 2.28e-62 | 213 |
| MS.gene055584.t1 | MTR_4g117000 | 34.870 | 347 | 210 | 7 | 29 | 363 | 34 | 376 | 1.44e-60 | 199 |
| MS.gene055584.t1 | MTR_4g117020 | 33.693 | 371 | 222 | 9 | 3 | 359 | 2 | 362 | 1.01e-58 | 203 |
| MS.gene055584.t1 | MTR_4g116990 | 36.517 | 356 | 196 | 8 | 29 | 363 | 36 | 382 | 1.12e-58 | 195 |
| MS.gene055584.t1 | MTR_4g117030 | 35.435 | 333 | 193 | 8 | 41 | 359 | 1 | 325 | 1.39e-56 | 196 |
| MS.gene055584.t1 | MTR_4g117800 | 34.286 | 175 | 113 | 1 | 6 | 180 | 4 | 176 | 6.18e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055584.t1 | AT4G19810 | 52.316 | 367 | 156 | 7 | 11 | 365 | 9 | 368 | 4.18e-120 | 352 |
| MS.gene055584.t1 | AT4G19810 | 52.316 | 367 | 156 | 7 | 11 | 365 | 9 | 368 | 4.18e-120 | 352 |
| MS.gene055584.t1 | AT4G19820 | 47.671 | 365 | 178 | 6 | 10 | 365 | 6 | 366 | 6.74e-105 | 313 |
| MS.gene055584.t1 | AT4G19760 | 45.283 | 371 | 173 | 10 | 17 | 363 | 1 | 365 | 5.94e-95 | 288 |
| MS.gene055584.t1 | AT4G19800 | 45.588 | 340 | 171 | 6 | 30 | 360 | 7 | 341 | 1.95e-93 | 285 |
| MS.gene055584.t1 | AT4G19750 | 45.000 | 360 | 178 | 9 | 17 | 362 | 1 | 354 | 2.15e-93 | 283 |
| MS.gene055584.t1 | AT4G19720 | 44.068 | 354 | 173 | 8 | 30 | 365 | 6 | 352 | 1.64e-88 | 271 |
| MS.gene055584.t1 | AT4G19730 | 42.308 | 338 | 166 | 9 | 17 | 331 | 1 | 332 | 4.63e-71 | 225 |
| MS.gene055584.t1 | AT4G19770 | 41.406 | 256 | 140 | 4 | 113 | 360 | 1 | 254 | 8.19e-57 | 186 |
| MS.gene055584.t1 | AT4G19740 | 36.126 | 191 | 108 | 5 | 136 | 316 | 24 | 210 | 5.04e-28 | 109 |
Find 89 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATTGAAGTTGTTATTTC+TGG | 0.094267 | 3.2:+24651946 | None:intergenic |
| CCCCACCACCAATTGATAAA+AGG | 0.195506 | 3.2:+24652056 | None:intergenic |
| GTTACTAATTATTGCTTCAT+AGG | 0.237729 | 3.2:-24651416 | MS.gene055584:CDS |
| TCTGCAAAAGCTGAAATTAA+AGG | 0.269287 | 3.2:-24652265 | MS.gene055584:CDS |
| GCCAAGCAAAATGGATTGTT+TGG | 0.270489 | 3.2:-24651338 | MS.gene055584:CDS |
| GTTGCTTATGCCAAGCAAAA+TGG | 0.325981 | 3.2:-24651347 | MS.gene055584:CDS |
| ATAAAGCTACACAGGGGCTT+GGG | 0.335713 | 3.2:-24651499 | MS.gene055584:CDS |
| ACCCAAGAGTCTAGCAGTTC+TGG | 0.345855 | 3.2:-24651839 | MS.gene055584:CDS |
| TGCCAGAACTGCTAGACTCT+TGG | 0.370329 | 3.2:+24651837 | None:intergenic |
| ATATTGAACAAGACAGCAAC+TGG | 0.377045 | 3.2:-24651301 | MS.gene055584:CDS |
| ACAAGGATATAATAAATGTT+GGG | 0.382597 | 3.2:-24651466 | MS.gene055584:CDS |
| ACTGGCTTGGCTAGCCATAT+TGG | 0.395681 | 3.2:+24652006 | None:intergenic |
| TTCCTTCATCTGCACTGAAC+TGG | 0.404343 | 3.2:+24651630 | None:intergenic |
| GATAAAGCTACACAGGGGCT+TGG | 0.405269 | 3.2:-24651500 | MS.gene055584:CDS |
| CTGCACTGAACTGGCCTGTC+GGG | 0.414245 | 3.2:+24651639 | None:intergenic |
| CAGATGAAGGAATCACAAAA+TGG | 0.416610 | 3.2:-24651619 | MS.gene055584:CDS |
| TCAATGGTCTTGATCTTGAC+TGG | 0.423081 | 3.2:-24651931 | MS.gene055584:CDS |
| TGAACTACTCTTTGCCTGAA+TGG | 0.425900 | 3.2:+24652087 | None:intergenic |
| CCCACCACCAATTGATAAAA+GGG | 0.428641 | 3.2:+24652057 | None:intergenic |
| ATTGCTTCATAGGGACAGAT+TGG | 0.433223 | 3.2:-24651406 | MS.gene055584:CDS |
| GAAGGAATCACAAAATGGAT+TGG | 0.434027 | 3.2:-24651614 | MS.gene055584:CDS |
| GCCAGAACTGCTAGACTCTT+GGG | 0.439126 | 3.2:+24651838 | None:intergenic |
| TATTGCAAGCAACTTGGATT+GGG | 0.441089 | 3.2:-24651738 | MS.gene055584:CDS |
| GACCTGGGTAGTATTCCAAT+GGG | 0.443214 | 3.2:+24651765 | None:intergenic |
| ATCACAAAATGGATTGGGTT+AGG | 0.444351 | 3.2:-24651608 | MS.gene055584:CDS |
| TTACTAATTATTGCTTCATA+GGG | 0.446458 | 3.2:-24651415 | MS.gene055584:CDS |
| CTGAAATTAAAGGTGGCTAT+TGG | 0.446672 | 3.2:-24652255 | MS.gene055584:CDS |
| GATTGTTTGGATACTTTGCT+TGG | 0.448742 | 3.2:-24651325 | MS.gene055584:CDS |
| TATAATAAATGTTGGGGCGC+AGG | 0.450194 | 3.2:-24651459 | MS.gene055584:CDS |
| TACAAGGATATAATAAATGT+TGG | 0.455760 | 3.2:-24651467 | MS.gene055584:CDS |
| GAACAAGTGGGTGAAATAAG+AGG | 0.458120 | 3.2:+24652195 | None:intergenic |
| GATAACTATCTGAGGTGAAA+AGG | 0.460405 | 3.2:+24651696 | None:intergenic |
| CTTGGTTGGTATTAGAATCA+AGG | 0.461412 | 3.2:+24652158 | None:intergenic |
| AACCTTCACTGAAACCATTC+AGG | 0.468884 | 3.2:-24652101 | MS.gene055584:CDS |
| AGCTGCGTTTGCAGAAGAAA+TGG | 0.471700 | 3.2:+24652132 | None:intergenic |
| AAGGAATCACAAAATGGATT+GGG | 0.476468 | 3.2:-24651613 | MS.gene055584:CDS |
| GCCTTGTCTGTGTCTGAGGA+TGG | 0.481902 | 3.2:+24651902 | None:intergenic |
| ATATTGCAAGCAACTTGGAT+TGG | 0.487324 | 3.2:-24651739 | MS.gene055584:CDS |
| GGCTATTGGTATTCTGATAG+TGG | 0.488891 | 3.2:-24652241 | MS.gene055584:CDS |
| AACTGGGCTCTTTCTCAAGC+AGG | 0.494078 | 3.2:-24651284 | MS.gene055584:intron |
| GCATTGGGTGTACCTTTCTA+CGG | 0.499133 | 3.2:-24651566 | MS.gene055584:CDS |
| TCTGCACTGAACTGGCCTGT+CGG | 0.505960 | 3.2:+24651638 | None:intergenic |
| TCAGGATATTGCAAGCAACT+TGG | 0.506566 | 3.2:-24651744 | MS.gene055584:CDS |
| TGCCTGAATGGTTTCAGTGA+AGG | 0.506803 | 3.2:+24652099 | None:intergenic |
| GTCTAGCAGTTCTGGCAAGC+CGG | 0.512533 | 3.2:-24651831 | MS.gene055584:CDS |
| CAATGGTCTTGATCTTGACT+GGG | 0.517624 | 3.2:-24651930 | MS.gene055584:CDS |
| AGTTGTTATTTCTGGCAAGT+TGG | 0.519658 | 3.2:+24651954 | None:intergenic |
| TTGCAGAAGAGAATTGGAGT+TGG | 0.520791 | 3.2:+24652281 | None:intergenic |
| TGTAATGAGTAAACCGAAGT+TGG | 0.521710 | 3.2:+24651880 | None:intergenic |
| TACCTTTCTACGGTTTCAAG+TGG | 0.524260 | 3.2:-24651556 | MS.gene055584:CDS |
| CTCTGATCAGATCACCCCAT+TGG | 0.524686 | 3.2:-24651780 | MS.gene055584:CDS |
| GCAATAATTAGTAACATATG+TGG | 0.528980 | 3.2:+24651424 | None:intergenic |
| TTGCTTGCAATATCCTGACC+TGG | 0.530546 | 3.2:+24651749 | None:intergenic |
| GCCAGAAATAACAACTTCAA+TGG | 0.532857 | 3.2:-24651947 | MS.gene055584:CDS |
| TGACCTGGGTAGTATTCCAA+TGG | 0.537501 | 3.2:+24651764 | None:intergenic |
| TTGCTTGGCATAAGCAACCT+TGG | 0.538135 | 3.2:+24651352 | None:intergenic |
| CTGTTATCTGTTGCAGTGGG+TGG | 0.539076 | 3.2:-24651803 | MS.gene055584:CDS |
| CTCCACTTGAAACCGTAGAA+AGG | 0.540691 | 3.2:+24651554 | None:intergenic |
| GACACAGACAAGGCCAACTT+CGG | 0.549309 | 3.2:-24651893 | MS.gene055584:CDS |
| CTGCTGTTATCTGTTGCAGT+GGG | 0.550549 | 3.2:-24651806 | MS.gene055584:CDS |
| GTTGGCCTTGTCTGTGTCTG+AGG | 0.557959 | 3.2:+24651898 | None:intergenic |
| CTGCAAATGCACAGAACAAG+TGG | 0.562193 | 3.2:+24652182 | None:intergenic |
| GGCCAGTTCAGTGCAGATGA+AGG | 0.565062 | 3.2:-24651632 | MS.gene055584:CDS |
| GCAACAGATAACAGCAGTGC+CGG | 0.569645 | 3.2:+24651812 | None:intergenic |
| ATTGGAATACTACCCAGGTC+AGG | 0.570178 | 3.2:-24651762 | MS.gene055584:CDS |
| AACAAGTGGGTGAAATAAGA+GGG | 0.575691 | 3.2:+24652196 | None:intergenic |
| ATTGGAGTTGGAGAATCATG+AGG | 0.580602 | 3.2:+24652293 | None:intergenic |
| TAAAGCTACACAGGGGCTTG+GGG | 0.584711 | 3.2:-24651498 | MS.gene055584:CDS |
| GCAGGTGGTTGTGTCGTGGT+TGG | 0.585458 | 3.2:+24651674 | None:intergenic |
| CACTCAGAGTATATCTGCCA+AGG | 0.587655 | 3.2:-24651369 | MS.gene055584:CDS |
| TGAGGAGAGTAGAAATCAAG+AGG | 0.589315 | 3.2:+24652311 | None:intergenic |
| TTGCAGAAGAAATGGTGACT+TGG | 0.590390 | 3.2:+24652140 | None:intergenic |
| CAAGGATATAATAAATGTTG+GGG | 0.596445 | 3.2:-24651465 | MS.gene055584:CDS |
| AGAAGAAATGGTGACTTGGT+TGG | 0.609583 | 3.2:+24652144 | None:intergenic |
| GCTTGGGGCAGTGAAGTACA+AGG | 0.610199 | 3.2:-24651483 | MS.gene055584:CDS |
| ACCCCATTGGAATACTACCC+AGG | 0.610645 | 3.2:-24651767 | MS.gene055584:CDS |
| TTCATAGGGACAGATTGGTA+TGG | 0.610823 | 3.2:-24651401 | MS.gene055584:CDS |
| GCAAAAGCTGAAATTAAAGG+TGG | 0.612217 | 3.2:-24652262 | MS.gene055584:CDS |
| ACTGCTGTTATCTGTTGCAG+TGG | 0.625070 | 3.2:-24651807 | MS.gene055584:CDS |
| TGCAGCTTCTCTAGCATGGG+CGG | 0.626467 | 3.2:-24651118 | MS.gene055584:intron |
| TGCTTGCAATATCCTGACCT+GGG | 0.628937 | 3.2:+24651750 | None:intergenic |
| GATCAATGTCAGAAACTGCA+AGG | 0.646791 | 3.2:+24652218 | None:intergenic |
| TCCATCCTCAGACACAGACA+AGG | 0.662423 | 3.2:-24651903 | MS.gene055584:CDS |
| AGGAGCAGGTGGTTGTGTCG+TGG | 0.663999 | 3.2:+24651670 | None:intergenic |
| TATTGAACAAGACAGCAACT+GGG | 0.675280 | 3.2:-24651300 | MS.gene055584:CDS |
| TCGGTTTACTCATTACAGAG+TGG | 0.678345 | 3.2:-24651874 | MS.gene055584:CDS |
| CGTGGTTGGATAACTATCTG+AGG | 0.680417 | 3.2:+24651688 | None:intergenic |
| TGCAAATGCACAGAACAAGT+GGG | 0.684809 | 3.2:+24652183 | None:intergenic |
| ACCTGGGTAGTATTCCAATG+GGG | 0.748799 | 3.2:+24651766 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAGGATATAATAAATGTT+GGG | - | chr3.2:24651984-24652003 | MS.gene055584:CDS | 20.0% |
| !! | TACAAGGATATAATAAATGT+TGG | - | chr3.2:24651983-24652002 | MS.gene055584:CDS | 20.0% |
| !! | TCAAAAATATCATGGTTATT+AGG | + | chr3.2:24651932-24651951 | None:intergenic | 20.0% |
| !! | TTACTAATTATTGCTTCATA+GGG | - | chr3.2:24652035-24652054 | MS.gene055584:CDS | 20.0% |
| !!! | TAGCTTTATCAAAAATATCA+TGG | + | chr3.2:24651940-24651959 | None:intergenic | 20.0% |
| ! | CAAGGATATAATAAATGTTG+GGG | - | chr3.2:24651985-24652004 | MS.gene055584:CDS | 25.0% |
| ! | GCAATAATTAGTAACATATG+TGG | + | chr3.2:24652029-24652048 | None:intergenic | 25.0% |
| ! | GTTACTAATTATTGCTTCAT+AGG | - | chr3.2:24652034-24652053 | MS.gene055584:CDS | 25.0% |
| !! | AAGAATCTATGAACGATTTT+CGG | + | chr3.2:24651472-24651491 | None:intergenic | 25.0% |
| !! | ATTTTTGATAAAGCTACACA+GGG | - | chr3.2:24651944-24651963 | MS.gene055584:CDS | 25.0% |
| !!! | GAATGAATGTTTTTTTGAGT+AGG | + | chr3.2:24651120-24651139 | None:intergenic | 25.0% |
| !!! | TATTTTTGATAAAGCTACAC+AGG | - | chr3.2:24651943-24651962 | MS.gene055584:CDS | 25.0% |
| CAACGAAGCTATGTTTAATT+AGG | + | chr3.2:24652207-24652226 | None:intergenic | 30.0% | |
| TCTGCAAAAGCTGAAATTAA+AGG | - | chr3.2:24651185-24651204 | MS.gene055584:intron | 30.0% | |
| ! | AAAACCCTTTTATCAATTGG+TGG | - | chr3.2:24651389-24651408 | MS.gene055584:CDS | 30.0% |
| ! | AAGGAATCACAAAATGGATT+GGG | - | chr3.2:24651837-24651856 | MS.gene055584:CDS | 30.0% |
| ! | GTGAAAACCCTTTTATCAAT+TGG | - | chr3.2:24651386-24651405 | MS.gene055584:CDS | 30.0% |
| ! | TTTTTGATAAAGCTACACAG+GGG | - | chr3.2:24651945-24651964 | MS.gene055584:CDS | 30.0% |
| !! | ACCATTGAAGTTGTTATTTC+TGG | + | chr3.2:24651507-24651526 | None:intergenic | 30.0% |
| AACAAGTGGGTGAAATAAGA+GGG | + | chr3.2:24651257-24651276 | None:intergenic | 35.0% | |
| ATATTGAACAAGACAGCAAC+TGG | - | chr3.2:24652149-24652168 | MS.gene055584:CDS | 35.0% | |
| ATATTGCAAGCAACTTGGAT+TGG | - | chr3.2:24651711-24651730 | MS.gene055584:CDS | 35.0% | |
| CAGATGAAGGAATCACAAAA+TGG | - | chr3.2:24651831-24651850 | MS.gene055584:CDS | 35.0% | |
| CCAAAAAGCAAACTAGCATT+GGG | - | chr3.2:24651869-24651888 | MS.gene055584:CDS | 35.0% | |
| CTGAAATTAAAGGTGGCTAT+TGG | - | chr3.2:24651195-24651214 | MS.gene055584:intron | 35.0% | |
| GAAGGAATCACAAAATGGAT+TGG | - | chr3.2:24651836-24651855 | MS.gene055584:CDS | 35.0% | |
| GATTGTTTGGATACTTTGCT+TGG | - | chr3.2:24652125-24652144 | MS.gene055584:CDS | 35.0% | |
| GCAAAAGCTGAAATTAAAGG+TGG | - | chr3.2:24651188-24651207 | MS.gene055584:intron | 35.0% | |
| GCCAGAAATAACAACTTCAA+TGG | - | chr3.2:24651503-24651522 | MS.gene055584:CDS | 35.0% | |
| GGCACAAAAATTTGCCAATA+TGG | - | chr3.2:24651430-24651449 | MS.gene055584:CDS | 35.0% | |
| TATTGAACAAGACAGCAACT+GGG | - | chr3.2:24652150-24652169 | MS.gene055584:CDS | 35.0% | |
| TATTGCAAGCAACTTGGATT+GGG | - | chr3.2:24651712-24651731 | MS.gene055584:CDS | 35.0% | |
| TCCAAAAAGCAAACTAGCAT+TGG | - | chr3.2:24651868-24651887 | MS.gene055584:CDS | 35.0% | |
| TCTGATTGTGAGTCATTCTA+CGG | - | chr3.2:24652286-24652305 | MS.gene055584:CDS | 35.0% | |
| TGTAATGAGTAAACCGAAGT+TGG | + | chr3.2:24651573-24651592 | None:intergenic | 35.0% | |
| ! | CTTGGTTGGTATTAGAATCA+AGG | + | chr3.2:24651295-24651314 | None:intergenic | 35.0% |
| ! | GATAACTATCTGAGGTGAAA+AGG | + | chr3.2:24651757-24651776 | None:intergenic | 35.0% |
| ! | GCAAATTTTTGTGCCAAAGT+AGG | + | chr3.2:24651425-24651444 | None:intergenic | 35.0% |
| ! | TCCAAACAATCCATTTTGCT+TGG | + | chr3.2:24652116-24652135 | None:intergenic | 35.0% |
| !! | AGTTGTTATTTCTGGCAAGT+TGG | + | chr3.2:24651499-24651518 | None:intergenic | 35.0% |
| !! | ATCACAAAATGGATTGGGTT+AGG | - | chr3.2:24651842-24651861 | MS.gene055584:CDS | 35.0% |
| AACCTTCACTGAAACCATTC+AGG | - | chr3.2:24651349-24651368 | MS.gene055584:CDS | 40.0% | |
| ATTGCTTCATAGGGACAGAT+TGG | - | chr3.2:24652044-24652063 | MS.gene055584:CDS | 40.0% | |
| ATTGGAGTTGGAGAATCATG+AGG | + | chr3.2:24651160-24651179 | None:intergenic | 40.0% | |
| CCCACCACCAATTGATAAAA+GGG | + | chr3.2:24651396-24651415 | None:intergenic | 40.0% | |
| CTGATTGTGAGTCATTCTAC+GGG | - | chr3.2:24652287-24652306 | MS.gene055584:CDS | 40.0% | |
| GAACAAGTGGGTGAAATAAG+AGG | + | chr3.2:24651258-24651277 | None:intergenic | 40.0% | |
| GATCAATGTCAGAAACTGCA+AGG | + | chr3.2:24651235-24651254 | None:intergenic | 40.0% | |
| GGCTATTGGTATTCTGATAG+TGG | - | chr3.2:24651209-24651228 | MS.gene055584:intron | 40.0% | |
| GTTGCTTATGCCAAGCAAAA+TGG | - | chr3.2:24652103-24652122 | MS.gene055584:CDS | 40.0% | |
| TACCTTTCTACGGTTTCAAG+TGG | - | chr3.2:24651894-24651913 | MS.gene055584:CDS | 40.0% | |
| TATAATAAATGTTGGGGCGC+AGG | - | chr3.2:24651991-24652010 | MS.gene055584:CDS | 40.0% | |
| TCAGGATATTGCAAGCAACT+TGG | - | chr3.2:24651706-24651725 | MS.gene055584:CDS | 40.0% | |
| TCGGTTTACTCATTACAGAG+TGG | - | chr3.2:24651576-24651595 | MS.gene055584:CDS | 40.0% | |
| TGAACTACTCTTTGCCTGAA+TGG | + | chr3.2:24651366-24651385 | None:intergenic | 40.0% | |
| TGAGGAGAGTAGAAATCAAG+AGG | + | chr3.2:24651142-24651161 | None:intergenic | 40.0% | |
| TGCAAATGCACAGAACAAGT+GGG | + | chr3.2:24651270-24651289 | None:intergenic | 40.0% | |
| TTCATAGGGACAGATTGGTA+TGG | - | chr3.2:24652049-24652068 | MS.gene055584:CDS | 40.0% | |
| TTGCAGAAGAAATGGTGACT+TGG | + | chr3.2:24651313-24651332 | None:intergenic | 40.0% | |
| TTGCAGAAGAGAATTGGAGT+TGG | + | chr3.2:24651172-24651191 | None:intergenic | 40.0% | |
| ! | ACCCTTTTATCAATTGGTGG+TGG | - | chr3.2:24651392-24651411 | MS.gene055584:CDS | 40.0% |
| ! | CAATGGTCTTGATCTTGACT+GGG | - | chr3.2:24651520-24651539 | MS.gene055584:CDS | 40.0% |
| ! | CAGCTTTTGCAGAAGAGAAT+TGG | + | chr3.2:24651178-24651197 | None:intergenic | 40.0% |
| ! | TATGAACGATTTTCGGCTAC+TGG | + | chr3.2:24651465-24651484 | None:intergenic | 40.0% |
| ! | TCAATGGTCTTGATCTTGAC+TGG | - | chr3.2:24651519-24651538 | MS.gene055584:CDS | 40.0% |
| ! | TTTTGCAGCTTCTCTAGCAT+GGG | - | chr3.2:24652329-24652348 | MS.gene055584:CDS | 40.0% |
| ! | TTTTTGCAGCTTCTCTAGCA+TGG | - | chr3.2:24652328-24652347 | MS.gene055584:CDS | 40.0% |
| !! | AGAAGAAATGGTGACTTGGT+TGG | + | chr3.2:24651309-24651328 | None:intergenic | 40.0% |
| !! | CCCTTTTATCAATTGGTGGT+GGG | - | chr3.2:24651393-24651412 | MS.gene055584:CDS | 40.0% |
| !! | GCCAAGCAAAATGGATTGTT+TGG | - | chr3.2:24652112-24652131 | MS.gene055584:CDS | 40.0% |
| !!! | CCCAATGCTAGTTTGCTTTT+TGG | + | chr3.2:24651872-24651891 | None:intergenic | 40.0% |
| !!! | CCTTTTATCAATTGGTGGTG+GGG | - | chr3.2:24651394-24651413 | MS.gene055584:CDS | 40.0% |
| !!! | CTTTTATCAATTGGTGGTGG+GGG | - | chr3.2:24651395-24651414 | MS.gene055584:CDS | 40.0% |
| ACCTGGGTAGTATTCCAATG+GGG | + | chr3.2:24651687-24651706 | None:intergenic | 45.0% | |
| ACTGCTGTTATCTGTTGCAG+TGG | - | chr3.2:24651643-24651662 | MS.gene055584:CDS | 45.0% | |
| AGCTGCGTTTGCAGAAGAAA+TGG | + | chr3.2:24651321-24651340 | None:intergenic | 45.0% | |
| ATAAAGCTACACAGGGGCTT+GGG | - | chr3.2:24651951-24651970 | MS.gene055584:CDS | 45.0% | |
| ATTGGAATACTACCCAGGTC+AGG | - | chr3.2:24651688-24651707 | MS.gene055584:CDS | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | - | chr3.2:24652081-24652100 | MS.gene055584:CDS | 45.0% | |
| CCCCACCACCAATTGATAAA+AGG | + | chr3.2:24651397-24651416 | None:intergenic | 45.0% | |
| CGTGGTTGGATAACTATCTG+AGG | + | chr3.2:24651765-24651784 | None:intergenic | 45.0% | |
| CTCCACTTGAAACCGTAGAA+AGG | + | chr3.2:24651899-24651918 | None:intergenic | 45.0% | |
| CTGCAAATGCACAGAACAAG+TGG | + | chr3.2:24651271-24651290 | None:intergenic | 45.0% | |
| CTGCTGTTATCTGTTGCAGT+GGG | - | chr3.2:24651644-24651663 | MS.gene055584:CDS | 45.0% | |
| GACCTGGGTAGTATTCCAAT+GGG | + | chr3.2:24651688-24651707 | None:intergenic | 45.0% | |
| GCATTGGGTGTACCTTTCTA+CGG | - | chr3.2:24651884-24651903 | MS.gene055584:CDS | 45.0% | |
| TGACCTGGGTAGTATTCCAA+TGG | + | chr3.2:24651689-24651708 | None:intergenic | 45.0% | |
| TGCCTGAATGGTTTCAGTGA+AGG | + | chr3.2:24651354-24651373 | None:intergenic | 45.0% | |
| TGCTTGCAATATCCTGACCT+GGG | + | chr3.2:24651703-24651722 | None:intergenic | 45.0% | |
| TTCCTTCATCTGCACTGAAC+TGG | + | chr3.2:24651823-24651842 | None:intergenic | 45.0% | |
| TTGCTTGCAATATCCTGACC+TGG | + | chr3.2:24651704-24651723 | None:intergenic | 45.0% | |
| TTGCTTGGCATAAGCAACCT+TGG | + | chr3.2:24652101-24652120 | None:intergenic | 45.0% | |
| AACTGGGCTCTTTCTCAAGC+AGG | - | chr3.2:24652166-24652185 | MS.gene055584:CDS | 50.0% | |
| ACCCAAGAGTCTAGCAGTTC+TGG | - | chr3.2:24651611-24651630 | MS.gene055584:CDS | 50.0% | |
| ACCCCATTGGAATACTACCC+AGG | - | chr3.2:24651683-24651702 | MS.gene055584:CDS | 50.0% | |
| CTCTGATCAGATCACCCCAT+TGG | - | chr3.2:24651670-24651689 | MS.gene055584:CDS | 50.0% | |
| CTGTTATCTGTTGCAGTGGG+TGG | - | chr3.2:24651647-24651666 | MS.gene055584:CDS | 50.0% | |
| GACACAGACAAGGCCAACTT+CGG | - | chr3.2:24651557-24651576 | MS.gene055584:CDS | 50.0% | |
| GATAAAGCTACACAGGGGCT+TGG | - | chr3.2:24651950-24651969 | MS.gene055584:CDS | 50.0% | |
| GCAACAGATAACAGCAGTGC+CGG | + | chr3.2:24651641-24651660 | None:intergenic | 50.0% | |
| GCCAGAACTGCTAGACTCTT+GGG | + | chr3.2:24651615-24651634 | None:intergenic | 50.0% | |
| TAAAGCTACACAGGGGCTTG+GGG | - | chr3.2:24651952-24651971 | MS.gene055584:CDS | 50.0% | |
| TCCATCCTCAGACACAGACA+AGG | - | chr3.2:24651547-24651566 | MS.gene055584:CDS | 50.0% | |
| TGCCAGAACTGCTAGACTCT+TGG | + | chr3.2:24651616-24651635 | None:intergenic | 50.0% | |
| ! | GCTCCTTTGAAAAACCCGAC+AGG | - | chr3.2:24651797-24651816 | MS.gene055584:CDS | 50.0% |
| !! | ACGATTTTCGGCTACTGGCT+TGG | + | chr3.2:24651460-24651479 | None:intergenic | 50.0% |
| !! | ACTGGCTTGGCTAGCCATAT+TGG | + | chr3.2:24651447-24651466 | None:intergenic | 50.0% |
| !! | GGGTTTTTCAAAGGAGCAGG+TGG | + | chr3.2:24651794-24651813 | None:intergenic | 50.0% |
| !! | GTCGGGTTTTTCAAAGGAGC+AGG | + | chr3.2:24651797-24651816 | None:intergenic | 50.0% |
| !! | TGGCCTGTCGGGTTTTTCAA+AGG | + | chr3.2:24651803-24651822 | None:intergenic | 50.0% |
| !! | TTATCAATTGGTGGTGGGGG+TGG | - | chr3.2:24651398-24651417 | MS.gene055584:CDS | 50.0% |
| GCCTTGTCTGTGTCTGAGGA+TGG | + | chr3.2:24651551-24651570 | None:intergenic | 55.0% | |
| GCTTGGGGCAGTGAAGTACA+AGG | - | chr3.2:24651967-24651986 | MS.gene055584:CDS | 55.0% | |
| GGCCAGTTCAGTGCAGATGA+AGG | - | chr3.2:24651818-24651837 | MS.gene055584:CDS | 55.0% | |
| GGGCTCTTTCTCAAGCAGGT+GGG | - | chr3.2:24652170-24652189 | MS.gene055584:CDS | 55.0% | |
| TGCAGCTTCTCTAGCATGGG+CGG | - | chr3.2:24652332-24652351 | MS.gene055584:CDS | 55.0% | |
| TGGGCTCTTTCTCAAGCAGG+TGG | - | chr3.2:24652169-24652188 | MS.gene055584:CDS | 55.0% | |
| ! | GTCTAGCAGTTCTGGCAAGC+CGG | - | chr3.2:24651619-24651638 | MS.gene055584:CDS | 55.0% |
| ! | TCTGCACTGAACTGGCCTGT+CGG | + | chr3.2:24651815-24651834 | None:intergenic | 55.0% |
| !! | GTTGGCCTTGTCTGTGTCTG+AGG | + | chr3.2:24651555-24651574 | None:intergenic | 55.0% |
| AGGAGCAGGTGGTTGTGTCG+TGG | + | chr3.2:24651783-24651802 | None:intergenic | 60.0% | |
| GCAGGTGGTTGTGTCGTGGT+TGG | + | chr3.2:24651779-24651798 | None:intergenic | 60.0% | |
| TGGTGGGGGTGGTCCTACTT+TGG | - | chr3.2:24651409-24651428 | MS.gene055584:CDS | 60.0% | |
| ! | CTGCACTGAACTGGCCTGTC+GGG | + | chr3.2:24651814-24651833 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 24651113 | 24652359 | 24651113 | ID=MS.gene055584 |
| chr3.2 | mRNA | 24651113 | 24652359 | 24651113 | ID=MS.gene055584.t1;Parent=MS.gene055584 |
| chr3.2 | exon | 24651285 | 24652359 | 24651285 | ID=MS.gene055584.t1.exon1;Parent=MS.gene055584.t1 |
| chr3.2 | CDS | 24651285 | 24652359 | 24651285 | ID=cds.MS.gene055584.t1;Parent=MS.gene055584.t1 |
| chr3.2 | exon | 24651113 | 24651135 | 24651113 | ID=MS.gene055584.t1.exon2;Parent=MS.gene055584.t1 |
| chr3.2 | CDS | 24651113 | 24651135 | 24651113 | ID=cds.MS.gene055584.t1;Parent=MS.gene055584.t1 |
| Gene Sequence |
| Protein sequence |
