Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72023.t1 | KEH36081.1 | 86.9 | 360 | 10 | 1 | 1 | 323 | 1 | 360 | 3.00E-175 | 624.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72023.t1 | O81862 | 44.2 | 355 | 153 | 6 | 11 | 322 | 9 | 361 | 5.2e-75 | 282.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72023.t1 | A0A072V330 | 86.9 | 360 | 10 | 1 | 1 | 323 | 1 | 360 | 2.2e-175 | 624.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014611 | MS.gene72023 | PPI |
| MS.gene014610 | MS.gene72023 | PPI |
| MS.gene40255 | MS.gene72023 | PPI |
| MS.gene72023 | MS.gene43244 | PPI |
| MS.gene53841 | MS.gene72023 | PPI |
| MS.gene72022 | MS.gene72023 | PPI |
| MS.gene43244 | MS.gene72023 | PPI |
| MS.gene40706 | MS.gene72023 | PPI |
| MS.gene036626 | MS.gene72023 | PPI |
| MS.gene48549 | MS.gene72023 | PPI |
| MS.gene72023 | MS.gene021954 | PPI |
| MS.gene72024 | MS.gene72023 | PPI |
| MS.gene40256 | MS.gene72023 | PPI |
| MS.gene021944 | MS.gene72023 | PPI |
| MS.gene041428 | MS.gene72023 | PPI |
| MS.gene72023 | MS.gene40705 | PPI |
| MS.gene58750 | MS.gene72023 | PPI |
| MS.gene055584 | MS.gene72023 | PPI |
| MS.gene014609 | MS.gene72023 | PPI |
| MS.gene72023 | MS.gene57747 | PPI |
| MS.gene44679 | MS.gene72023 | PPI |
| MS.gene40257 | MS.gene72023 | PPI |
| MS.gene72023 | MS.gene40707 | PPI |
| MS.gene72023 | MS.gene041428 | PPI |
| MS.gene44682 | MS.gene72023 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72023.t1 | MTR_3g110280 | 86.944 | 360 | 10 | 1 | 1 | 323 | 1 | 360 | 0.0 | 630 |
| MS.gene72023.t1 | MTR_3g110320 | 76.880 | 359 | 47 | 1 | 1 | 323 | 1 | 359 | 0.0 | 561 |
| MS.gene72023.t1 | MTR_3g110320 | 76.816 | 358 | 47 | 1 | 1 | 322 | 1 | 358 | 0.0 | 559 |
| MS.gene72023.t1 | MTR_4g116920 | 76.724 | 348 | 59 | 2 | 1 | 326 | 1 | 348 | 0.0 | 530 |
| MS.gene72023.t1 | MTR_4g117040 | 32.703 | 370 | 189 | 10 | 9 | 326 | 6 | 367 | 1.39e-52 | 185 |
| MS.gene72023.t1 | MTR_1g013150 | 31.124 | 347 | 190 | 6 | 22 | 321 | 32 | 376 | 5.35e-50 | 171 |
| MS.gene72023.t1 | MTR_4g117020 | 29.491 | 373 | 207 | 8 | 3 | 327 | 2 | 366 | 3.42e-49 | 175 |
| MS.gene72023.t1 | MTR_4g117000 | 31.692 | 325 | 175 | 6 | 30 | 309 | 35 | 357 | 6.92e-49 | 168 |
| MS.gene72023.t1 | MTR_4g116990 | 32.551 | 341 | 178 | 8 | 30 | 320 | 37 | 375 | 2.11e-45 | 159 |
| MS.gene72023.t1 | MTR_4g117030 | 30.149 | 335 | 180 | 7 | 41 | 327 | 1 | 329 | 4.38e-45 | 164 |
| MS.gene72023.t1 | MTR_4g117800 | 26.012 | 173 | 94 | 1 | 6 | 144 | 4 | 176 | 3.37e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72023.t1 | AT4G19810 | 45.634 | 355 | 148 | 6 | 11 | 322 | 9 | 361 | 1.25e-98 | 296 |
| MS.gene72023.t1 | AT4G19810 | 45.634 | 355 | 148 | 6 | 11 | 322 | 9 | 361 | 1.25e-98 | 296 |
| MS.gene72023.t1 | AT4G19820 | 43.137 | 357 | 158 | 6 | 10 | 323 | 6 | 360 | 6.30e-90 | 273 |
| MS.gene72023.t1 | AT4G19800 | 40.058 | 342 | 159 | 6 | 25 | 323 | 2 | 340 | 3.59e-80 | 249 |
| MS.gene72023.t1 | AT4G19750 | 40.833 | 360 | 155 | 10 | 17 | 325 | 1 | 353 | 6.63e-79 | 245 |
| MS.gene72023.t1 | AT4G19760 | 40.548 | 365 | 155 | 10 | 17 | 323 | 1 | 361 | 3.84e-76 | 238 |
| MS.gene72023.t1 | AT4G19720 | 37.861 | 346 | 158 | 7 | 30 | 323 | 6 | 346 | 5.05e-70 | 222 |
| MS.gene72023.t1 | AT4G19730 | 37.313 | 335 | 151 | 9 | 17 | 295 | 1 | 332 | 6.10e-60 | 195 |
| MS.gene72023.t1 | AT4G19770 | 40.726 | 248 | 134 | 5 | 90 | 329 | 14 | 256 | 7.68e-54 | 177 |
| MS.gene72023.t1 | AT4G19740 | 37.696 | 191 | 105 | 5 | 100 | 280 | 24 | 210 | 6.49e-32 | 119 |
Find 85 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATGGAAGTTGTTATTTC+TGG | 0.149476 | 3.4:+95576368 | None:intergenic |
| TCATGAATTCTATGTTTATT+AGG | 0.202131 | 3.4:+95575943 | None:intergenic |
| TCTACAAACGCTGCCATTAA+AGG | 0.257757 | 3.4:-95576631 | MS.gene72023:CDS |
| GCACTTGGTTTACCCTTCTA+TGG | 0.267748 | 3.4:-95575988 | MS.gene72023:CDS |
| GCCAAGCAAAATGGTTTGTT+TGG | 0.270489 | 3.4:-95575760 | MS.gene72023:CDS |
| ATACCAATAGCCACCTTTAA+TGG | 0.272579 | 3.4:+95576618 | None:intergenic |
| CAACAAAGCAGTGTTTAATT+AGG | 0.279434 | 3.4:+95575667 | None:intergenic |
| CAGCGTTTGTAGAGGAAAAT+TGG | 0.280388 | 3.4:+95576641 | None:intergenic |
| CAGATGAAGGTATCACAAAA+TGG | 0.294502 | 3.4:-95576041 | MS.gene72023:CDS |
| ATAAAGCTACGCAGGGATTA+GGG | 0.294851 | 3.4:-95575921 | MS.gene72023:CDS |
| ACTCCATTTGTAACCATAGA+AGG | 0.300520 | 3.4:+95575975 | None:intergenic |
| GATAAAGCTACGCAGGGATT+AGG | 0.321139 | 3.4:-95575922 | MS.gene72023:CDS |
| TACCTTCATCTGCACTAAAT+TGG | 0.339776 | 3.4:+95576052 | None:intergenic |
| GTTGCTTATGCCAAGCAAAA+TGG | 0.349055 | 3.4:-95575769 | MS.gene72023:CDS |
| CGAATTACTCTTTGACTGAA+TGG | 0.366334 | 3.4:+95576453 | None:intergenic |
| GCCGCAGAGTCTAGGAGTTC+CGG | 0.370169 | 3.4:-95576261 | MS.gene72023:CDS |
| GATAACTATCTGAGATAAAA+AGG | 0.373862 | 3.4:+95576118 | None:intergenic |
| CTGCACTAAATTGGCCGGTT+GGG | 0.383400 | 3.4:+95576061 | None:intergenic |
| CTATGGTTACAAATGGAGTT+TGG | 0.386230 | 3.4:-95575971 | MS.gene72023:CDS |
| TAACAACAGTACCGGCTTGC+CGG | 0.396736 | 3.4:+95576242 | None:intergenic |
| GACGTTGAAATGACCAACTT+TGG | 0.415190 | 3.4:-95576315 | MS.gene72023:CDS |
| CTGCTGTGGCCGCAGAGTCT+AGG | 0.417042 | 3.4:-95576269 | MS.gene72023:CDS |
| TGTTGCAAACAACTTGGATT+GGG | 0.430200 | 3.4:-95576160 | MS.gene72023:CDS |
| TACCCTTCTATGGTTACAAA+TGG | 0.432906 | 3.4:-95575978 | MS.gene72023:CDS |
| AAACAAGTGGGTGAAATAAG+AGG | 0.449767 | 3.4:+95576561 | None:intergenic |
| CTGCCATTAAAGGTGGCTAT+TGG | 0.451080 | 3.4:-95576621 | MS.gene72023:CDS |
| CTTGGTTGGTATTAGAATCA+AGG | 0.461412 | 3.4:+95576524 | None:intergenic |
| ACTGCTTCAAAGGGACAGAT+TGG | 0.463515 | 3.4:-95575828 | MS.gene72023:CDS |
| ATATTGAACAAGACAACAAT+TGG | 0.467582 | 3.4:-95575723 | MS.gene72023:CDS |
| ATGTTGCAAACAACTTGGAT+TGG | 0.470996 | 3.4:-95576161 | MS.gene72023:CDS |
| CTCAGAATTACTGCTTCAAA+GGG | 0.473408 | 3.4:-95575837 | MS.gene72023:CDS |
| TCAAGATGTTGCAAACAACT+TGG | 0.478830 | 3.4:-95576166 | MS.gene72023:CDS |
| GCGGGTGGTTGTGTTTGAGT+TGG | 0.482952 | 3.4:+95576096 | None:intergenic |
| ATCACAAAATGGGTAGGGTT+AGG | 0.483616 | 3.4:-95576030 | MS.gene72023:CDS |
| TCCATGGCCTTGATCTTGAC+TGG | 0.484655 | 3.4:-95576353 | MS.gene72023:CDS |
| TCTGCACTAAATTGGCCGGT+TGG | 0.503768 | 3.4:+95576060 | None:intergenic |
| TGTAATGAGTAAACCAAAGT+TGG | 0.506140 | 3.4:+95576302 | None:intergenic |
| AGATGAAGGTATCACAAAAT+GGG | 0.506219 | 3.4:-95576040 | MS.gene72023:CDS |
| GTCATTTCAACGTCTGAGGA+TGG | 0.506694 | 3.4:+95576324 | None:intergenic |
| TGACCTGGGTAGTACTTCAA+TGG | 0.515075 | 3.4:+95576186 | None:intergenic |
| GCTCAGAATTACTGCTTCAA+AGG | 0.515724 | 3.4:-95575838 | MS.gene72023:CDS |
| TTCATCTGCACTAAATTGGC+CGG | 0.515888 | 3.4:+95576056 | None:intergenic |
| TTGGAGAATCATGAGGAGAG+TGG | 0.515988 | 3.4:+95576666 | None:intergenic |
| AATTGGACTCTTTCTCAAGC+AGG | 0.528807 | 3.4:-95575706 | MS.gene72023:CDS |
| AGCTGCGTGTGTAGAAGAAA+TGG | 0.529170 | 3.4:+95576498 | None:intergenic |
| TTGTAGAGGAAAATTGGAGT+TGG | 0.530932 | 3.4:+95576647 | None:intergenic |
| GTCTAGGAGTTCCGGCAAGC+CGG | 0.536961 | 3.4:-95576253 | MS.gene72023:CDS |
| TTGCTTGGCATAAGCAACCT+TGG | 0.538135 | 3.4:+95575774 | None:intergenic |
| TTGTTTGCAACATCTTGACC+TGG | 0.548598 | 3.4:+95576171 | None:intergenic |
| AATTCATGATAAAGCTACGC+AGG | 0.550930 | 3.4:-95575929 | MS.gene72023:CDS |
| TGACTGAATGGTTTCAGTGA+AGG | 0.552685 | 3.4:+95576465 | None:intergenic |
| AGTTGTTATTTCTGGCTAGT+CGG | 0.552779 | 3.4:+95576376 | None:intergenic |
| GAAGGTATCACAAAATGGGT+AGG | 0.554568 | 3.4:-95576036 | MS.gene72023:CDS |
| GCCAGTCAAGATCAAGGCCA+TGG | 0.557488 | 3.4:+95576352 | None:intergenic |
| TTGTTATCTGCTGCAGTGGG+TGG | 0.559981 | 3.4:-95576225 | MS.gene72023:CDS |
| GCAGTAATTCTGAGCGTATG+TGG | 0.561135 | 3.4:+95575846 | None:intergenic |
| CTGTTGTTATCTGCTGCAGT+GGG | 0.561968 | 3.4:-95576228 | MS.gene72023:CDS |
| AACAAGTGGGTGAAATAAGA+GGG | 0.575691 | 3.4:+95576562 | None:intergenic |
| CTGCAAATGCACAAAACAAG+TGG | 0.579073 | 3.4:+95576548 | None:intergenic |
| GGCCAATTTAGTGCAGATGA+AGG | 0.583988 | 3.4:-95576054 | MS.gene72023:CDS |
| AAGGTATCACAAAATGGGTA+GGG | 0.585197 | 3.4:-95576035 | MS.gene72023:CDS |
| CTCCATTTGTAACCATAGAA+GGG | 0.586080 | 3.4:+95575976 | None:intergenic |
| CACTCAGAGTATATCTGCCA+AGG | 0.587655 | 3.4:-95575791 | MS.gene72023:CDS |
| GATACTGCCAGTCAAGATCA+AGG | 0.589592 | 3.4:+95576346 | None:intergenic |
| GTTGGTCATTTCAACGTCTG+AGG | 0.592628 | 3.4:+95576320 | None:intergenic |
| TACAGAGTGGAGAGCTGCTG+TGG | 0.596100 | 3.4:-95576283 | MS.gene72023:CDS |
| GCAGCAGATAACAACAGTAC+CGG | 0.602334 | 3.4:+95576234 | None:intergenic |
| TGAGGAGAGTGGAAATCAAG+AGG | 0.606133 | 3.4:+95576677 | None:intergenic |
| TTCAAAGGGACAGATTGGTA+TGG | 0.606399 | 3.4:-95575823 | MS.gene72023:CDS |
| TTTAATGGCAGCGTTTGTAG+AGG | 0.608544 | 3.4:+95576633 | None:intergenic |
| ATTCATGATAAAGCTACGCA+GGG | 0.610111 | 3.4:-95575928 | MS.gene72023:CDS |
| ACTGTTGTTATCTGCTGCAG+TGG | 0.615630 | 3.4:-95576229 | MS.gene72023:CDS |
| ATTAGGGGCAGTGAAGTACA+AGG | 0.624997 | 3.4:-95575905 | MS.gene72023:CDS |
| GCCAGAAATAACAACTTCCA+TGG | 0.628402 | 3.4:-95576369 | MS.gene72023:CDS |
| ATTGGAGTTGGAGAATCATG+AGG | 0.636575 | 3.4:+95576659 | None:intergenic |
| TGCAAATGCACAAAACAAGT+GGG | 0.643130 | 3.4:+95576549 | None:intergenic |
| GATCAATCTCAGAAACTGCA+AGG | 0.648716 | 3.4:+95576584 | None:intergenic |
| TAAAGCTACGCAGGGATTAG+GGG | 0.652308 | 3.4:-95575920 | MS.gene72023:CDS |
| TGTTTGCAACATCTTGACCT+GGG | 0.652675 | 3.4:+95576172 | None:intergenic |
| ACAAACGCTGCCATTAAAGG+TGG | 0.659948 | 3.4:-95576628 | MS.gene72023:CDS |
| AGAAGAAATGGTGACTTGGT+TGG | 0.669123 | 3.4:+95576510 | None:intergenic |
| GTGTAGAAGAAATGGTGACT+TGG | 0.674829 | 3.4:+95576506 | None:intergenic |
| TTGGTTTACTCATTACAGAG+TGG | 0.678345 | 3.4:-95576296 | MS.gene72023:CDS |
| ACTCCATTGAAGTACTACCC+AGG | 0.697331 | 3.4:-95576189 | MS.gene72023:CDS |
| GCCGGAACTCCTAGACTCTG+CGG | 0.700936 | 3.4:+95576260 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAGGATATAAAAAATGAT+GGG | - | chr3.4:95576496-95576515 | MS.gene72023:CDS | 20.0% |
| !! | TACAAGGATATAAAAAATGA+TGG | - | chr3.4:95576495-95576514 | MS.gene72023:CDS | 20.0% |
| !! | TCATGAATTCTATGTTTATT+AGG | + | chr3.4:95576444-95576463 | None:intergenic | 20.0% |
| ! | ATATTGAACAAGACAACAAT+TGG | - | chr3.4:95576661-95576680 | MS.gene72023:CDS | 25.0% |
| ! | CAAGGATATAAAAAATGATG+GGG | - | chr3.4:95576497-95576516 | MS.gene72023:CDS | 25.0% |
| !! | GATAACTATCTGAGATAAAA+AGG | + | chr3.4:95576269-95576288 | None:intergenic | 25.0% |
| CATTCAGTCAAAGAGTAATT+CGG | - | chr3.4:95575932-95575951 | MS.gene72023:CDS | 30.0% | |
| TGTAATGAGTAAACCAAAGT+TGG | + | chr3.4:95576085-95576104 | None:intergenic | 30.0% | |
| ! | AAAACGCTTTTATCAATTGG+TGG | - | chr3.4:95575957-95575976 | MS.gene72023:CDS | 30.0% |
| ! | GTGAAAACGCTTTTATCAAT+TGG | - | chr3.4:95575954-95575973 | MS.gene72023:CDS | 30.0% |
| ! | GTTTGTTTGGATATTTTGCT+TGG | - | chr3.4:95576637-95576656 | MS.gene72023:CDS | 30.0% |
| !! | AGATGAAGGTATCACAAAAT+GGG | - | chr3.4:95576344-95576363 | MS.gene72023:CDS | 30.0% |
| AAACAAGTGGGTGAAATAAG+AGG | + | chr3.4:95575826-95575845 | None:intergenic | 35.0% | |
| AACAAGTGGGTGAAATAAGA+GGG | + | chr3.4:95575825-95575844 | None:intergenic | 35.0% | |
| AATTCATGATAAAGCTACGC+AGG | - | chr3.4:95576455-95576474 | MS.gene72023:intron | 35.0% | |
| ACTCCATTTGTAACCATAGA+AGG | + | chr3.4:95576412-95576431 | None:intergenic | 35.0% | |
| ATACCAATAGCCACCTTTAA+TGG | + | chr3.4:95575769-95575788 | None:intergenic | 35.0% | |
| ATGTTGCAAACAACTTGGAT+TGG | - | chr3.4:95576223-95576242 | MS.gene72023:CDS | 35.0% | |
| ATTCATGATAAAGCTACGCA+GGG | - | chr3.4:95576456-95576475 | MS.gene72023:intron | 35.0% | |
| CGAATTACTCTTTGACTGAA+TGG | + | chr3.4:95575934-95575953 | None:intergenic | 35.0% | |
| CTATGGTTACAAATGGAGTT+TGG | - | chr3.4:95576413-95576432 | MS.gene72023:intron | 35.0% | |
| CTCAGAATTACTGCTTCAAA+GGG | - | chr3.4:95576547-95576566 | MS.gene72023:CDS | 35.0% | |
| CTCCATTTGTAACCATAGAA+GGG | + | chr3.4:95576411-95576430 | None:intergenic | 35.0% | |
| TACCCTTCTATGGTTACAAA+TGG | - | chr3.4:95576406-95576425 | MS.gene72023:intron | 35.0% | |
| TACCTTCATCTGCACTAAAT+TGG | + | chr3.4:95576335-95576354 | None:intergenic | 35.0% | |
| TCAAGATGTTGCAAACAACT+TGG | - | chr3.4:95576218-95576237 | MS.gene72023:CDS | 35.0% | |
| TGCAAATGCACAAAACAAGT+GGG | + | chr3.4:95575838-95575857 | None:intergenic | 35.0% | |
| TGTTGCAAACAACTTGGATT+GGG | - | chr3.4:95576224-95576243 | MS.gene72023:CDS | 35.0% | |
| TTGGTTTACTCATTACAGAG+TGG | - | chr3.4:95576088-95576107 | MS.gene72023:CDS | 35.0% | |
| TTGTAGAGGAAAATTGGAGT+TGG | + | chr3.4:95575740-95575759 | None:intergenic | 35.0% | |
| ! | AAGGTATCACAAAATGGGTA+GGG | - | chr3.4:95576349-95576368 | MS.gene72023:CDS | 35.0% |
| ! | CTTGGTTGGTATTAGAATCA+AGG | + | chr3.4:95575863-95575882 | None:intergenic | 35.0% |
| ! | TCCAAACAAACCATTTTGCT+TGG | + | chr3.4:95576628-95576647 | None:intergenic | 35.0% |
| !! | AGTTGTTATTTCTGGCTAGT+CGG | + | chr3.4:95576011-95576030 | None:intergenic | 35.0% |
| !! | CAGATGAAGGTATCACAAAA+TGG | - | chr3.4:95576343-95576362 | MS.gene72023:CDS | 35.0% |
| AATTGGACTCTTTCTCAAGC+AGG | - | chr3.4:95576678-95576697 | MS.gene72023:CDS | 40.0% | |
| ATAAAGCTACGCAGGGATTA+GGG | - | chr3.4:95576463-95576482 | MS.gene72023:CDS | 40.0% | |
| ATCACAAAATGGGTAGGGTT+AGG | - | chr3.4:95576354-95576373 | MS.gene72023:CDS | 40.0% | |
| ATTGGAGTTGGAGAATCATG+AGG | + | chr3.4:95575728-95575747 | None:intergenic | 40.0% | |
| CAGCGTTTGTAGAGGAAAAT+TGG | + | chr3.4:95575746-95575765 | None:intergenic | 40.0% | |
| CCAAAAAGCAAACTTGCACT+TGG | - | chr3.4:95576381-95576400 | MS.gene72023:CDS | 40.0% | |
| CTAGTCGGATTGAAGAATCT+AGG | + | chr3.4:95575996-95576015 | None:intergenic | 40.0% | |
| CTGCAAATGCACAAAACAAG+TGG | + | chr3.4:95575839-95575858 | None:intergenic | 40.0% | |
| GACGTTGAAATGACCAACTT+TGG | - | chr3.4:95576069-95576088 | MS.gene72023:CDS | 40.0% | |
| GATCAATCTCAGAAACTGCA+AGG | + | chr3.4:95575803-95575822 | None:intergenic | 40.0% | |
| GCCAGAAATAACAACTTCCA+TGG | - | chr3.4:95576015-95576034 | MS.gene72023:CDS | 40.0% | |
| GCTCAGAATTACTGCTTCAA+AGG | - | chr3.4:95576546-95576565 | MS.gene72023:CDS | 40.0% | |
| GTGTAGAAGAAATGGTGACT+TGG | + | chr3.4:95575881-95575900 | None:intergenic | 40.0% | |
| GTTGCTTATGCCAAGCAAAA+TGG | - | chr3.4:95576615-95576634 | MS.gene72023:CDS | 40.0% | |
| TCTACAAACGCTGCCATTAA+AGG | - | chr3.4:95575753-95575772 | MS.gene72023:CDS | 40.0% | |
| TGACTGAATGGTTTCAGTGA+AGG | + | chr3.4:95575922-95575941 | None:intergenic | 40.0% | |
| TGTTTGCAACATCTTGACCT+GGG | + | chr3.4:95576215-95576234 | None:intergenic | 40.0% | |
| TTCAAAGGGACAGATTGGTA+TGG | - | chr3.4:95576561-95576580 | MS.gene72023:CDS | 40.0% | |
| TTCATCTGCACTAAATTGGC+CGG | + | chr3.4:95576331-95576350 | None:intergenic | 40.0% | |
| TTGTTTGCAACATCTTGACC+TGG | + | chr3.4:95576216-95576235 | None:intergenic | 40.0% | |
| TTTAATGGCAGCGTTTGTAG+AGG | + | chr3.4:95575754-95575773 | None:intergenic | 40.0% | |
| ! | ACGCTTTTATCAATTGGTGG+TGG | - | chr3.4:95575960-95575979 | MS.gene72023:CDS | 40.0% |
| ! | CAAGAGGAACGAATGCTTTT+TGG | + | chr3.4:95575694-95575713 | None:intergenic | 40.0% |
| !! | AGAAGAAATGGTGACTTGGT+TGG | + | chr3.4:95575877-95575896 | None:intergenic | 40.0% |
| !! | CCAAGTGCAAGTTTGCTTTT+TGG | + | chr3.4:95576384-95576403 | None:intergenic | 40.0% |
| !! | GAAGGTATCACAAAATGGGT+AGG | - | chr3.4:95576348-95576367 | MS.gene72023:CDS | 40.0% |
| !! | GCCAAGCAAAATGGTTTGTT+TGG | - | chr3.4:95576624-95576643 | MS.gene72023:CDS | 40.0% |
| !! | GCCATGGAAGTTGTTATTTC+TGG | + | chr3.4:95576019-95576038 | None:intergenic | 40.0% |
| !!! | CTTTTATCAATTGGTGGTGG+TGG | - | chr3.4:95575963-95575982 | MS.gene72023:CDS | 40.0% |
| ACAAACGCTGCCATTAAAGG+TGG | - | chr3.4:95575756-95575775 | MS.gene72023:CDS | 45.0% | |
| ACTGCTTCAAAGGGACAGAT+TGG | - | chr3.4:95576556-95576575 | MS.gene72023:CDS | 45.0% | |
| ACTGTTGTTATCTGCTGCAG+TGG | - | chr3.4:95576155-95576174 | MS.gene72023:CDS | 45.0% | |
| AGCTGCGTGTGTAGAAGAAA+TGG | + | chr3.4:95575889-95575908 | None:intergenic | 45.0% | |
| ATTAGGGGCAGTGAAGTACA+AGG | - | chr3.4:95576479-95576498 | MS.gene72023:CDS | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | - | chr3.4:95576593-95576612 | MS.gene72023:CDS | 45.0% | |
| CTGCCATTAAAGGTGGCTAT+TGG | - | chr3.4:95575763-95575782 | MS.gene72023:CDS | 45.0% | |
| CTGTTGTTATCTGCTGCAGT+GGG | - | chr3.4:95576156-95576175 | MS.gene72023:CDS | 45.0% | |
| GATAAAGCTACGCAGGGATT+AGG | - | chr3.4:95576462-95576481 | MS.gene72023:CDS | 45.0% | |
| GATACTGCCAGTCAAGATCA+AGG | + | chr3.4:95576041-95576060 | None:intergenic | 45.0% | |
| GCACTTGGTTTACCCTTCTA+TGG | - | chr3.4:95576396-95576415 | MS.gene72023:intron | 45.0% | |
| GCAGCAGATAACAACAGTAC+CGG | + | chr3.4:95576153-95576172 | None:intergenic | 45.0% | |
| GCAGTAATTCTGAGCGTATG+TGG | + | chr3.4:95576541-95576560 | None:intergenic | 45.0% | |
| GGCCAATTTAGTGCAGATGA+AGG | - | chr3.4:95576330-95576349 | MS.gene72023:CDS | 45.0% | |
| GTCATTTCAACGTCTGAGGA+TGG | + | chr3.4:95576063-95576082 | None:intergenic | 45.0% | |
| GTTGGTCATTTCAACGTCTG+AGG | + | chr3.4:95576067-95576086 | None:intergenic | 45.0% | |
| TAAAGCTACGCAGGGATTAG+GGG | - | chr3.4:95576464-95576483 | MS.gene72023:CDS | 45.0% | |
| TGACCTGGGTAGTACTTCAA+TGG | + | chr3.4:95576201-95576220 | None:intergenic | 45.0% | |
| TGAGGAGAGTGGAAATCAAG+AGG | + | chr3.4:95575710-95575729 | None:intergenic | 45.0% | |
| TTGCTTGGCATAAGCAACCT+TGG | + | chr3.4:95576613-95576632 | None:intergenic | 45.0% | |
| TTGGAGAATCATGAGGAGAG+TGG | + | chr3.4:95575721-95575740 | None:intergenic | 45.0% | |
| ! | ACTCCATTGAAGTACTACCC+AGG | - | chr3.4:95576195-95576214 | MS.gene72023:CDS | 45.0% |
| ! | GCTCCTTTGAAAAACCCAAC+CGG | - | chr3.4:95576309-95576328 | MS.gene72023:CDS | 45.0% |
| !! | GGTTGGGTTTTTCAAAGGAG+CGG | + | chr3.4:95576310-95576329 | None:intergenic | 45.0% |
| !! | GTTGGGTTTTTCAAAGGAGC+GGG | + | chr3.4:95576309-95576328 | None:intergenic | 45.0% |
| !! | TTATCAATTGGTGGTGGTGG+TGG | - | chr3.4:95575966-95575985 | MS.gene72023:CDS | 45.0% |
| CTGCACTAAATTGGCCGGTT+GGG | + | chr3.4:95576326-95576345 | None:intergenic | 50.0% | |
| TCTGCACTAAATTGGCCGGT+TGG | + | chr3.4:95576327-95576346 | None:intergenic | 50.0% | |
| TTGTTATCTGCTGCAGTGGG+TGG | - | chr3.4:95576159-95576178 | MS.gene72023:CDS | 50.0% | |
| ! | TCCATGGCCTTGATCTTGAC+TGG | - | chr3.4:95576031-95576050 | MS.gene72023:CDS | 50.0% |
| !! | TAACAACAGTACCGGCTTGC+CGG | + | chr3.4:95576145-95576164 | None:intergenic | 50.0% |
| !! | TGGCCGGTTGGGTTTTTCAA+AGG | + | chr3.4:95576315-95576334 | None:intergenic | 50.0% |
| GCCAGTCAAGATCAAGGCCA+TGG | + | chr3.4:95576035-95576054 | None:intergenic | 55.0% | |
| GCGGGTGGTTGTGTTTGAGT+TGG | + | chr3.4:95576291-95576310 | None:intergenic | 55.0% | |
| TACAGAGTGGAGAGCTGCTG+TGG | - | chr3.4:95576101-95576120 | MS.gene72023:CDS | 55.0% | |
| !! | GGGTTTTTCAAAGGAGCGGG+TGG | + | chr3.4:95576306-95576325 | None:intergenic | 55.0% |
| !! | TCAATTGGTGGTGGTGGTGG+TGG | - | chr3.4:95575969-95575988 | MS.gene72023:CDS | 55.0% |
| GCCGCAGAGTCTAGGAGTTC+CGG | - | chr3.4:95576123-95576142 | MS.gene72023:CDS | 60.0% | |
| GCCGGAACTCCTAGACTCTG+CGG | + | chr3.4:95576127-95576146 | None:intergenic | 60.0% | |
| GTCTAGGAGTTCCGGCAAGC+CGG | - | chr3.4:95576131-95576150 | MS.gene72023:CDS | 60.0% | |
| CTGCTGTGGCCGCAGAGTCT+AGG | - | chr3.4:95576115-95576134 | MS.gene72023:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 95575681 | 95576725 | 95575681 | ID=MS.gene72023 |
| chr3.4 | mRNA | 95575681 | 95576725 | 95575681 | ID=MS.gene72023.t1;Parent=MS.gene72023 |
| chr3.4 | exon | 95576461 | 95576725 | 95576461 | ID=MS.gene72023.t1.exon1;Parent=MS.gene72023.t1 |
| chr3.4 | CDS | 95576461 | 95576725 | 95576461 | ID=cds.MS.gene72023.t1;Parent=MS.gene72023.t1 |
| chr3.4 | exon | 95575681 | 95576408 | 95575681 | ID=MS.gene72023.t1.exon2;Parent=MS.gene72023.t1 |
| chr3.4 | CDS | 95575681 | 95576408 | 95575681 | ID=cds.MS.gene72023.t1;Parent=MS.gene72023.t1 |
| Gene Sequence |
| Protein sequence |
