Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40257.t1 | PNY09053.1 | 93.3 | 358 | 24 | 0 | 1 | 358 | 1 | 358 | 9.70E-191 | 676 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40257.t1 | O81862 | 50.8 | 364 | 166 | 6 | 11 | 365 | 9 | 368 | 5.7e-91 | 335.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40257.t1 | A0A2K3P1D5 | 93.3 | 358 | 24 | 0 | 1 | 358 | 1 | 358 | 7.0e-191 | 676.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055584 | MS.gene40257 | 0.847503 | 1.11E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40257 | MS.gene021954 | PPI |
| MS.gene40257 | MS.gene72022 | PPI |
| MS.gene58750 | MS.gene40257 | PPI |
| MS.gene44679 | MS.gene40257 | PPI |
| MS.gene40257 | MS.gene48549 | PPI |
| MS.gene40257 | MS.gene57747 | PPI |
| MS.gene44682 | MS.gene40257 | PPI |
| MS.gene055584 | MS.gene40257 | PPI |
| MS.gene014609 | MS.gene40257 | PPI |
| MS.gene014611 | MS.gene40257 | PPI |
| MS.gene40257 | MS.gene014610 | PPI |
| MS.gene40257 | MS.gene036626 | PPI |
| MS.gene40255 | MS.gene40257 | PPI |
| MS.gene40257 | MS.gene40705 | PPI |
| MS.gene40257 | MS.gene40707 | PPI |
| MS.gene40257 | MS.gene041428 | PPI |
| MS.gene40257 | MS.gene021944 | PPI |
| MS.gene40257 | MS.gene40256 | PPI |
| MS.gene53841 | MS.gene40257 | PPI |
| MS.gene40257 | MS.gene43244 | PPI |
| MS.gene40706 | MS.gene40257 | PPI |
| MS.gene40257 | MS.gene72023 | PPI |
| MS.gene72024 | MS.gene40257 | PPI |
| MS.gene40256 | MS.gene40257 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40257.t1 | MTR_3g110280 | 87.744 | 359 | 43 | 1 | 1 | 358 | 1 | 359 | 0.0 | 632 |
| MS.gene40257.t1 | MTR_3g110320 | 83.242 | 364 | 61 | 0 | 1 | 364 | 1 | 364 | 0.0 | 631 |
| MS.gene40257.t1 | MTR_3g110320 | 83.565 | 359 | 59 | 0 | 1 | 359 | 1 | 359 | 0.0 | 626 |
| MS.gene40257.t1 | MTR_4g116920 | 85.000 | 360 | 38 | 3 | 1 | 359 | 1 | 345 | 0.0 | 597 |
| MS.gene40257.t1 | MTR_1g013150 | 35.112 | 356 | 214 | 5 | 22 | 364 | 32 | 383 | 1.80e-65 | 212 |
| MS.gene40257.t1 | MTR_4g117040 | 38.040 | 347 | 188 | 9 | 30 | 359 | 28 | 364 | 4.39e-62 | 212 |
| MS.gene40257.t1 | MTR_4g117000 | 35.159 | 347 | 209 | 7 | 29 | 363 | 34 | 376 | 2.67e-61 | 201 |
| MS.gene40257.t1 | MTR_4g116990 | 37.079 | 356 | 194 | 8 | 29 | 363 | 36 | 382 | 4.16e-60 | 198 |
| MS.gene40257.t1 | MTR_4g117020 | 33.693 | 371 | 222 | 9 | 3 | 359 | 2 | 362 | 1.71e-58 | 202 |
| MS.gene40257.t1 | MTR_4g117030 | 35.435 | 333 | 193 | 8 | 41 | 359 | 1 | 325 | 2.52e-56 | 196 |
| MS.gene40257.t1 | MTR_4g117800 | 34.286 | 175 | 113 | 1 | 6 | 180 | 4 | 176 | 6.54e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40257.t1 | AT4G19810 | 52.316 | 367 | 156 | 7 | 11 | 365 | 9 | 368 | 5.43e-120 | 352 |
| MS.gene40257.t1 | AT4G19810 | 52.316 | 367 | 156 | 7 | 11 | 365 | 9 | 368 | 5.43e-120 | 352 |
| MS.gene40257.t1 | AT4G19820 | 47.945 | 365 | 177 | 6 | 10 | 365 | 6 | 366 | 1.49e-105 | 315 |
| MS.gene40257.t1 | AT4G19760 | 45.283 | 371 | 173 | 10 | 17 | 363 | 1 | 365 | 6.21e-95 | 288 |
| MS.gene40257.t1 | AT4G19800 | 45.882 | 340 | 170 | 6 | 30 | 360 | 7 | 341 | 5.21e-94 | 286 |
| MS.gene40257.t1 | AT4G19750 | 45.000 | 360 | 178 | 9 | 17 | 362 | 1 | 354 | 1.99e-93 | 283 |
| MS.gene40257.t1 | AT4G19720 | 44.068 | 354 | 173 | 8 | 30 | 365 | 6 | 352 | 1.62e-88 | 271 |
| MS.gene40257.t1 | AT4G19730 | 42.308 | 338 | 166 | 9 | 17 | 331 | 1 | 332 | 4.94e-71 | 225 |
| MS.gene40257.t1 | AT4G19770 | 41.797 | 256 | 139 | 4 | 113 | 360 | 1 | 254 | 1.95e-57 | 188 |
| MS.gene40257.t1 | AT4G19740 | 36.649 | 191 | 107 | 5 | 136 | 316 | 24 | 210 | 1.00e-28 | 111 |
Find 89 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATTGAAGTTGTTATTTC+TGG | 0.094267 | 3.3:+91168773 | None:intergenic |
| CCCCACCACCAATTGATAAA+AGG | 0.195506 | 3.3:+91168883 | None:intergenic |
| GTTACTAATTATTGCTTCAT+AGG | 0.237729 | 3.3:-91168243 | MS.gene40257:CDS |
| TCTGCAAAAGCTGAAATTAA+AGG | 0.269287 | 3.3:-91169092 | MS.gene40257:CDS |
| GCCAAGCAAAATGGATTGTT+TGG | 0.270489 | 3.3:-91168165 | MS.gene40257:CDS |
| GTTGCTTATGCCAAGCAAAA+TGG | 0.325981 | 3.3:-91168174 | MS.gene40257:CDS |
| ATAAAGCTACACAGGGGCTT+GGG | 0.335713 | 3.3:-91168326 | MS.gene40257:CDS |
| ACCCAAGAGTCTAGCAGTTC+TGG | 0.345855 | 3.3:-91168666 | MS.gene40257:CDS |
| TGCCAGAACTGCTAGACTCT+TGG | 0.370329 | 3.3:+91168664 | None:intergenic |
| ATATTGAACAAGACAGCAAC+TGG | 0.377045 | 3.3:-91168128 | MS.gene40257:CDS |
| ACAAGGATATAATAAATGTT+GGG | 0.382597 | 3.3:-91168293 | MS.gene40257:CDS |
| ACTGGCTTGGCTAGCCATAT+TGG | 0.395681 | 3.3:+91168833 | None:intergenic |
| TTCCTTCATCTGCACTGAAC+TGG | 0.404343 | 3.3:+91168457 | None:intergenic |
| GATAAAGCTACACAGGGGCT+TGG | 0.405269 | 3.3:-91168327 | MS.gene40257:CDS |
| CTGCACTGAACTGGCCTGTC+GGG | 0.414245 | 3.3:+91168466 | None:intergenic |
| CAGATGAAGGAATCACAAAA+TGG | 0.416610 | 3.3:-91168446 | MS.gene40257:CDS |
| TCAATGGTCTTGATCTTGAC+TGG | 0.423081 | 3.3:-91168758 | MS.gene40257:CDS |
| TGAACTACTCTTTGCCTGAA+TGG | 0.425900 | 3.3:+91168914 | None:intergenic |
| CCCACCACCAATTGATAAAA+GGG | 0.428641 | 3.3:+91168884 | None:intergenic |
| ATTGCTTCATAGGGACAGAT+TGG | 0.433223 | 3.3:-91168233 | MS.gene40257:CDS |
| GAAGGAATCACAAAATGGAT+TGG | 0.434027 | 3.3:-91168441 | MS.gene40257:CDS |
| GCCAGAACTGCTAGACTCTT+GGG | 0.439126 | 3.3:+91168665 | None:intergenic |
| TATTGCAAGCAACTTGGATT+GGG | 0.441089 | 3.3:-91168565 | MS.gene40257:CDS |
| GACCTGGGTAGTATTCCAAT+GGG | 0.443214 | 3.3:+91168592 | None:intergenic |
| ATCACAAAATGGATTGGGTT+AGG | 0.444351 | 3.3:-91168435 | MS.gene40257:CDS |
| TTACTAATTATTGCTTCATA+GGG | 0.446458 | 3.3:-91168242 | MS.gene40257:CDS |
| CTGAAATTAAAGGTGGCTAT+TGG | 0.446672 | 3.3:-91169082 | MS.gene40257:CDS |
| GATTGTTTGGATACTTTGCT+TGG | 0.448742 | 3.3:-91168152 | MS.gene40257:CDS |
| TATAATAAATGTTGGGGCGC+AGG | 0.450194 | 3.3:-91168286 | MS.gene40257:CDS |
| TACAAGGATATAATAAATGT+TGG | 0.455760 | 3.3:-91168294 | MS.gene40257:CDS |
| GAACAAGTGGGTGAAATAAG+AGG | 0.458120 | 3.3:+91169022 | None:intergenic |
| GATAACTATCTGAGGTGAAA+AGG | 0.460405 | 3.3:+91168523 | None:intergenic |
| CTTGGTTGGTATTAGAATCA+AGG | 0.461412 | 3.3:+91168985 | None:intergenic |
| AGCTGCGTTTGTAGAAGAAA+TGG | 0.467412 | 3.3:+91168959 | None:intergenic |
| AACCTTCACTGAAACCATTC+AGG | 0.468884 | 3.3:-91168928 | MS.gene40257:CDS |
| AAGGAATCACAAAATGGATT+GGG | 0.476468 | 3.3:-91168440 | MS.gene40257:CDS |
| GCCTTGTCTGTGTCTGAGGA+TGG | 0.481902 | 3.3:+91168729 | None:intergenic |
| ATATTGCAAGCAACTTGGAT+TGG | 0.487324 | 3.3:-91168566 | MS.gene40257:CDS |
| GGCTATTGGTATTCTGATAG+TGG | 0.488891 | 3.3:-91169068 | MS.gene40257:CDS |
| AACTGGGCTCTTTCTCAAGC+AGG | 0.494078 | 3.3:-91168111 | MS.gene40257:intron |
| GCATTGGGTGTACCTTTCTA+CGG | 0.499133 | 3.3:-91168393 | MS.gene40257:CDS |
| TCTGCACTGAACTGGCCTGT+CGG | 0.505960 | 3.3:+91168465 | None:intergenic |
| TCAGGATATTGCAAGCAACT+TGG | 0.506566 | 3.3:-91168571 | MS.gene40257:CDS |
| TGCCTGAATGGTTTCAGTGA+AGG | 0.506803 | 3.3:+91168926 | None:intergenic |
| GTCTAGCAGTTCTGGCAAGC+CGG | 0.512533 | 3.3:-91168658 | MS.gene40257:CDS |
| CAATGGTCTTGATCTTGACT+GGG | 0.517624 | 3.3:-91168757 | MS.gene40257:CDS |
| AGTTGTTATTTCTGGCAAGT+TGG | 0.519658 | 3.3:+91168781 | None:intergenic |
| TTGCAGAAGAGAATTGGAGT+TGG | 0.520791 | 3.3:+91169108 | None:intergenic |
| TGTAATGAGTAAACCGAAGT+TGG | 0.521710 | 3.3:+91168707 | None:intergenic |
| TACCTTTCTACGGTTTCAAG+TGG | 0.524260 | 3.3:-91168383 | MS.gene40257:CDS |
| CTCTGATCAGATCACCCCAT+TGG | 0.524686 | 3.3:-91168607 | MS.gene40257:CDS |
| GCAATAATTAGTAACATATG+TGG | 0.528980 | 3.3:+91168251 | None:intergenic |
| TTGCTTGCAATATCCTGACC+TGG | 0.530546 | 3.3:+91168576 | None:intergenic |
| GCCAGAAATAACAACTTCAA+TGG | 0.532857 | 3.3:-91168774 | MS.gene40257:CDS |
| CTGCTGTTATCTGCTGCAGT+GGG | 0.533450 | 3.3:-91168633 | MS.gene40257:CDS |
| TGACCTGGGTAGTATTCCAA+TGG | 0.537501 | 3.3:+91168591 | None:intergenic |
| TTGCTTGGCATAAGCAACCT+TGG | 0.538135 | 3.3:+91168179 | None:intergenic |
| CTGTTATCTGCTGCAGTGGG+TGG | 0.540115 | 3.3:-91168630 | MS.gene40257:CDS |
| CTCCACTTGAAACCGTAGAA+AGG | 0.540691 | 3.3:+91168381 | None:intergenic |
| GCAGCAGATAACAGCAGTGC+CGG | 0.543725 | 3.3:+91168639 | None:intergenic |
| GACACAGACAAGGCCAACTT+CGG | 0.549309 | 3.3:-91168720 | MS.gene40257:CDS |
| GTTGGCCTTGTCTGTGTCTG+AGG | 0.557959 | 3.3:+91168725 | None:intergenic |
| CTGCAAATGCACAGAACAAG+TGG | 0.562193 | 3.3:+91169009 | None:intergenic |
| GGCCAGTTCAGTGCAGATGA+AGG | 0.565062 | 3.3:-91168459 | MS.gene40257:CDS |
| ATTGGAATACTACCCAGGTC+AGG | 0.570178 | 3.3:-91168589 | MS.gene40257:CDS |
| AACAAGTGGGTGAAATAAGA+GGG | 0.575691 | 3.3:+91169023 | None:intergenic |
| ATTGGAGTTGGAGAATCATG+AGG | 0.580602 | 3.3:+91169120 | None:intergenic |
| TAAAGCTACACAGGGGCTTG+GGG | 0.584711 | 3.3:-91168325 | MS.gene40257:CDS |
| GCAGGTGGTTGTGTCGTGGT+TGG | 0.585458 | 3.3:+91168501 | None:intergenic |
| CACTCAGAGTATATCTGCCA+AGG | 0.587655 | 3.3:-91168196 | MS.gene40257:CDS |
| TGAGGAGAGTAGAAATCAAG+AGG | 0.589315 | 3.3:+91169138 | None:intergenic |
| CAAGGATATAATAAATGTTG+GGG | 0.596445 | 3.3:-91168292 | MS.gene40257:CDS |
| AGAAGAAATGGTGACTTGGT+TGG | 0.600417 | 3.3:+91168971 | None:intergenic |
| GCTTGGGGCAGTGAAGTACA+AGG | 0.610199 | 3.3:-91168310 | MS.gene40257:CDS |
| ACCCCATTGGAATACTACCC+AGG | 0.610645 | 3.3:-91168594 | MS.gene40257:CDS |
| TTCATAGGGACAGATTGGTA+TGG | 0.610823 | 3.3:-91168228 | MS.gene40257:CDS |
| GCAAAAGCTGAAATTAAAGG+TGG | 0.612217 | 3.3:-91169089 | MS.gene40257:CDS |
| ACTGCTGTTATCTGCTGCAG+TGG | 0.613986 | 3.3:-91168634 | MS.gene40257:CDS |
| TGCAGCTTCTCTAGCATGGG+CGG | 0.626467 | 3.3:-91167944 | MS.gene40257:intron |
| TGCTTGCAATATCCTGACCT+GGG | 0.628937 | 3.3:+91168577 | None:intergenic |
| TTGTAGAAGAAATGGTGACT+TGG | 0.641849 | 3.3:+91168967 | None:intergenic |
| GATCAATGTCAGAAACTGCA+AGG | 0.646791 | 3.3:+91169045 | None:intergenic |
| TCCATCCTCAGACACAGACA+AGG | 0.662423 | 3.3:-91168730 | MS.gene40257:CDS |
| AGGAGCAGGTGGTTGTGTCG+TGG | 0.663999 | 3.3:+91168497 | None:intergenic |
| TATTGAACAAGACAGCAACT+GGG | 0.675280 | 3.3:-91168127 | MS.gene40257:CDS |
| TCGGTTTACTCATTACAGAG+TGG | 0.678345 | 3.3:-91168701 | MS.gene40257:CDS |
| CGTGGTTGGATAACTATCTG+AGG | 0.680417 | 3.3:+91168515 | None:intergenic |
| TGCAAATGCACAGAACAAGT+GGG | 0.684809 | 3.3:+91169010 | None:intergenic |
| ACCTGGGTAGTATTCCAATG+GGG | 0.748799 | 3.3:+91168593 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAGGATATAATAAATGTT+GGG | - | chr3.3:91168810-91168829 | MS.gene40257:CDS | 20.0% |
| !! | TACAAGGATATAATAAATGT+TGG | - | chr3.3:91168809-91168828 | MS.gene40257:CDS | 20.0% |
| !! | TCAAAAATATCATGGTTATT+AGG | + | chr3.3:91168758-91168777 | None:intergenic | 20.0% |
| !! | TTACTAATTATTGCTTCATA+GGG | - | chr3.3:91168861-91168880 | MS.gene40257:CDS | 20.0% |
| !!! | TAGCTTTATCAAAAATATCA+TGG | + | chr3.3:91168766-91168785 | None:intergenic | 20.0% |
| ! | CAAGGATATAATAAATGTTG+GGG | - | chr3.3:91168811-91168830 | MS.gene40257:CDS | 25.0% |
| ! | GCAATAATTAGTAACATATG+TGG | + | chr3.3:91168855-91168874 | None:intergenic | 25.0% |
| ! | GTTACTAATTATTGCTTCAT+AGG | - | chr3.3:91168860-91168879 | MS.gene40257:CDS | 25.0% |
| !! | AAGAATCTATGAACGATTTT+CGG | + | chr3.3:91168298-91168317 | None:intergenic | 25.0% |
| !! | ATTTTTGATAAAGCTACACA+GGG | - | chr3.3:91168770-91168789 | MS.gene40257:CDS | 25.0% |
| !!! | GAATGAATGTTTTTTTGAGT+AGG | + | chr3.3:91167946-91167965 | None:intergenic | 25.0% |
| !!! | TATTTTTGATAAAGCTACAC+AGG | - | chr3.3:91168769-91168788 | MS.gene40257:CDS | 25.0% |
| CAACGAAGCTATGTTTAATT+AGG | + | chr3.3:91169033-91169052 | None:intergenic | 30.0% | |
| TCTGCAAAAGCTGAAATTAA+AGG | - | chr3.3:91168011-91168030 | MS.gene40257:intron | 30.0% | |
| ! | AAAACCCTTTTATCAATTGG+TGG | - | chr3.3:91168215-91168234 | MS.gene40257:CDS | 30.0% |
| ! | AAGGAATCACAAAATGGATT+GGG | - | chr3.3:91168663-91168682 | MS.gene40257:CDS | 30.0% |
| ! | GTGAAAACCCTTTTATCAAT+TGG | - | chr3.3:91168212-91168231 | MS.gene40257:CDS | 30.0% |
| ! | TTTTTGATAAAGCTACACAG+GGG | - | chr3.3:91168771-91168790 | MS.gene40257:CDS | 30.0% |
| !! | ACCATTGAAGTTGTTATTTC+TGG | + | chr3.3:91168333-91168352 | None:intergenic | 30.0% |
| AACAAGTGGGTGAAATAAGA+GGG | + | chr3.3:91168083-91168102 | None:intergenic | 35.0% | |
| ATATTGAACAAGACAGCAAC+TGG | - | chr3.3:91168975-91168994 | MS.gene40257:CDS | 35.0% | |
| ATATTGCAAGCAACTTGGAT+TGG | - | chr3.3:91168537-91168556 | MS.gene40257:CDS | 35.0% | |
| CAGATGAAGGAATCACAAAA+TGG | - | chr3.3:91168657-91168676 | MS.gene40257:CDS | 35.0% | |
| CCAAAAAGCAAACTAGCATT+GGG | - | chr3.3:91168695-91168714 | MS.gene40257:CDS | 35.0% | |
| CTGAAATTAAAGGTGGCTAT+TGG | - | chr3.3:91168021-91168040 | MS.gene40257:intron | 35.0% | |
| CTGATTGTGAGTCATTCTAA+CGG | - | chr3.3:91169113-91169132 | MS.gene40257:CDS | 35.0% | |
| GAAGGAATCACAAAATGGAT+TGG | - | chr3.3:91168662-91168681 | MS.gene40257:CDS | 35.0% | |
| GATTGTTTGGATACTTTGCT+TGG | - | chr3.3:91168951-91168970 | MS.gene40257:CDS | 35.0% | |
| GCAAAAGCTGAAATTAAAGG+TGG | - | chr3.3:91168014-91168033 | MS.gene40257:intron | 35.0% | |
| GCCAGAAATAACAACTTCAA+TGG | - | chr3.3:91168329-91168348 | MS.gene40257:CDS | 35.0% | |
| GGCACAAAAATTTGCCAATA+TGG | - | chr3.3:91168256-91168275 | MS.gene40257:CDS | 35.0% | |
| TATTGAACAAGACAGCAACT+GGG | - | chr3.3:91168976-91168995 | MS.gene40257:CDS | 35.0% | |
| TATTGCAAGCAACTTGGATT+GGG | - | chr3.3:91168538-91168557 | MS.gene40257:CDS | 35.0% | |
| TCCAAAAAGCAAACTAGCAT+TGG | - | chr3.3:91168694-91168713 | MS.gene40257:CDS | 35.0% | |
| TGATTGTGAGTCATTCTAAC+GGG | - | chr3.3:91169114-91169133 | MS.gene40257:CDS | 35.0% | |
| TGTAATGAGTAAACCGAAGT+TGG | + | chr3.3:91168399-91168418 | None:intergenic | 35.0% | |
| TTGTAGAAGAAATGGTGACT+TGG | + | chr3.3:91168139-91168158 | None:intergenic | 35.0% | |
| ! | CTTGGTTGGTATTAGAATCA+AGG | + | chr3.3:91168121-91168140 | None:intergenic | 35.0% |
| ! | GATAACTATCTGAGGTGAAA+AGG | + | chr3.3:91168583-91168602 | None:intergenic | 35.0% |
| ! | GCAAATTTTTGTGCCAAAGT+AGG | + | chr3.3:91168251-91168270 | None:intergenic | 35.0% |
| ! | TCCAAACAATCCATTTTGCT+TGG | + | chr3.3:91168942-91168961 | None:intergenic | 35.0% |
| !! | AGTTGTTATTTCTGGCAAGT+TGG | + | chr3.3:91168325-91168344 | None:intergenic | 35.0% |
| !! | ATCACAAAATGGATTGGGTT+AGG | - | chr3.3:91168668-91168687 | MS.gene40257:CDS | 35.0% |
| AACCTTCACTGAAACCATTC+AGG | - | chr3.3:91168175-91168194 | MS.gene40257:CDS | 40.0% | |
| AGCTGCGTTTGTAGAAGAAA+TGG | + | chr3.3:91168147-91168166 | None:intergenic | 40.0% | |
| ATTGCTTCATAGGGACAGAT+TGG | - | chr3.3:91168870-91168889 | MS.gene40257:CDS | 40.0% | |
| ATTGGAGTTGGAGAATCATG+AGG | + | chr3.3:91167986-91168005 | None:intergenic | 40.0% | |
| CCCACCACCAATTGATAAAA+GGG | + | chr3.3:91168222-91168241 | None:intergenic | 40.0% | |
| GAACAAGTGGGTGAAATAAG+AGG | + | chr3.3:91168084-91168103 | None:intergenic | 40.0% | |
| GATCAATGTCAGAAACTGCA+AGG | + | chr3.3:91168061-91168080 | None:intergenic | 40.0% | |
| GGCTATTGGTATTCTGATAG+TGG | - | chr3.3:91168035-91168054 | MS.gene40257:intron | 40.0% | |
| GTTGCTTATGCCAAGCAAAA+TGG | - | chr3.3:91168929-91168948 | MS.gene40257:CDS | 40.0% | |
| TACCTTTCTACGGTTTCAAG+TGG | - | chr3.3:91168720-91168739 | MS.gene40257:CDS | 40.0% | |
| TATAATAAATGTTGGGGCGC+AGG | - | chr3.3:91168817-91168836 | MS.gene40257:CDS | 40.0% | |
| TCAGGATATTGCAAGCAACT+TGG | - | chr3.3:91168532-91168551 | MS.gene40257:CDS | 40.0% | |
| TCGGTTTACTCATTACAGAG+TGG | - | chr3.3:91168402-91168421 | MS.gene40257:CDS | 40.0% | |
| TGAACTACTCTTTGCCTGAA+TGG | + | chr3.3:91168192-91168211 | None:intergenic | 40.0% | |
| TGAGGAGAGTAGAAATCAAG+AGG | + | chr3.3:91167968-91167987 | None:intergenic | 40.0% | |
| TGCAAATGCACAGAACAAGT+GGG | + | chr3.3:91168096-91168115 | None:intergenic | 40.0% | |
| TTCATAGGGACAGATTGGTA+TGG | - | chr3.3:91168875-91168894 | MS.gene40257:CDS | 40.0% | |
| TTGCAGAAGAGAATTGGAGT+TGG | + | chr3.3:91167998-91168017 | None:intergenic | 40.0% | |
| ! | ACCCTTTTATCAATTGGTGG+TGG | - | chr3.3:91168218-91168237 | MS.gene40257:CDS | 40.0% |
| ! | CAATGGTCTTGATCTTGACT+GGG | - | chr3.3:91168346-91168365 | MS.gene40257:CDS | 40.0% |
| ! | CAGCTTTTGCAGAAGAGAAT+TGG | + | chr3.3:91168004-91168023 | None:intergenic | 40.0% |
| ! | TATGAACGATTTTCGGCTAC+TGG | + | chr3.3:91168291-91168310 | None:intergenic | 40.0% |
| ! | TCAATGGTCTTGATCTTGAC+TGG | - | chr3.3:91168345-91168364 | MS.gene40257:CDS | 40.0% |
| ! | TTTTGCAGCTTCTCTAGCAT+GGG | - | chr3.3:91169156-91169175 | MS.gene40257:CDS | 40.0% |
| ! | TTTTTGCAGCTTCTCTAGCA+TGG | - | chr3.3:91169155-91169174 | MS.gene40257:CDS | 40.0% |
| !! | AGAAGAAATGGTGACTTGGT+TGG | + | chr3.3:91168135-91168154 | None:intergenic | 40.0% |
| !! | CCCTTTTATCAATTGGTGGT+GGG | - | chr3.3:91168219-91168238 | MS.gene40257:CDS | 40.0% |
| !! | GCCAAGCAAAATGGATTGTT+TGG | - | chr3.3:91168938-91168957 | MS.gene40257:CDS | 40.0% |
| !!! | CCCAATGCTAGTTTGCTTTT+TGG | + | chr3.3:91168698-91168717 | None:intergenic | 40.0% |
| !!! | CCTTTTATCAATTGGTGGTG+GGG | - | chr3.3:91168220-91168239 | MS.gene40257:CDS | 40.0% |
| !!! | CTTTTATCAATTGGTGGTGG+GGG | - | chr3.3:91168221-91168240 | MS.gene40257:CDS | 40.0% |
| ACCTGGGTAGTATTCCAATG+GGG | + | chr3.3:91168513-91168532 | None:intergenic | 45.0% | |
| ATAAAGCTACACAGGGGCTT+GGG | - | chr3.3:91168777-91168796 | MS.gene40257:CDS | 45.0% | |
| ATTGGAATACTACCCAGGTC+AGG | - | chr3.3:91168514-91168533 | MS.gene40257:CDS | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | - | chr3.3:91168907-91168926 | MS.gene40257:CDS | 45.0% | |
| CCCCACCACCAATTGATAAA+AGG | + | chr3.3:91168223-91168242 | None:intergenic | 45.0% | |
| CGTGGTTGGATAACTATCTG+AGG | + | chr3.3:91168591-91168610 | None:intergenic | 45.0% | |
| CTCCACTTGAAACCGTAGAA+AGG | + | chr3.3:91168725-91168744 | None:intergenic | 45.0% | |
| CTGCAAATGCACAGAACAAG+TGG | + | chr3.3:91168097-91168116 | None:intergenic | 45.0% | |
| GACCTGGGTAGTATTCCAAT+GGG | + | chr3.3:91168514-91168533 | None:intergenic | 45.0% | |
| GCATTGGGTGTACCTTTCTA+CGG | - | chr3.3:91168710-91168729 | MS.gene40257:CDS | 45.0% | |
| TGACCTGGGTAGTATTCCAA+TGG | + | chr3.3:91168515-91168534 | None:intergenic | 45.0% | |
| TGCCTGAATGGTTTCAGTGA+AGG | + | chr3.3:91168180-91168199 | None:intergenic | 45.0% | |
| TGCTTGCAATATCCTGACCT+GGG | + | chr3.3:91168529-91168548 | None:intergenic | 45.0% | |
| TTCCTTCATCTGCACTGAAC+TGG | + | chr3.3:91168649-91168668 | None:intergenic | 45.0% | |
| TTGCTTGCAATATCCTGACC+TGG | + | chr3.3:91168530-91168549 | None:intergenic | 45.0% | |
| TTGCTTGGCATAAGCAACCT+TGG | + | chr3.3:91168927-91168946 | None:intergenic | 45.0% | |
| AACTGGGCTCTTTCTCAAGC+AGG | - | chr3.3:91168992-91169011 | MS.gene40257:CDS | 50.0% | |
| ACCCAAGAGTCTAGCAGTTC+TGG | - | chr3.3:91168437-91168456 | MS.gene40257:CDS | 50.0% | |
| ACCCCATTGGAATACTACCC+AGG | - | chr3.3:91168509-91168528 | MS.gene40257:CDS | 50.0% | |
| ACTGCTGTTATCTGCTGCAG+TGG | - | chr3.3:91168469-91168488 | MS.gene40257:CDS | 50.0% | |
| CTCTGATCAGATCACCCCAT+TGG | - | chr3.3:91168496-91168515 | MS.gene40257:CDS | 50.0% | |
| CTGCTGTTATCTGCTGCAGT+GGG | - | chr3.3:91168470-91168489 | MS.gene40257:CDS | 50.0% | |
| GACACAGACAAGGCCAACTT+CGG | - | chr3.3:91168383-91168402 | MS.gene40257:CDS | 50.0% | |
| GATAAAGCTACACAGGGGCT+TGG | - | chr3.3:91168776-91168795 | MS.gene40257:CDS | 50.0% | |
| GCCAGAACTGCTAGACTCTT+GGG | + | chr3.3:91168441-91168460 | None:intergenic | 50.0% | |
| TAAAGCTACACAGGGGCTTG+GGG | - | chr3.3:91168778-91168797 | MS.gene40257:CDS | 50.0% | |
| TCCATCCTCAGACACAGACA+AGG | - | chr3.3:91168373-91168392 | MS.gene40257:CDS | 50.0% | |
| TGCCAGAACTGCTAGACTCT+TGG | + | chr3.3:91168442-91168461 | None:intergenic | 50.0% | |
| ! | GCTCCTTTGAAAAACCCGAC+AGG | - | chr3.3:91168623-91168642 | MS.gene40257:CDS | 50.0% |
| !! | ACGATTTTCGGCTACTGGCT+TGG | + | chr3.3:91168286-91168305 | None:intergenic | 50.0% |
| !! | ACTGGCTTGGCTAGCCATAT+TGG | + | chr3.3:91168273-91168292 | None:intergenic | 50.0% |
| !! | GGGTTTTTCAAAGGAGCAGG+TGG | + | chr3.3:91168620-91168639 | None:intergenic | 50.0% |
| !! | GTCGGGTTTTTCAAAGGAGC+AGG | + | chr3.3:91168623-91168642 | None:intergenic | 50.0% |
| !! | TGGCCTGTCGGGTTTTTCAA+AGG | + | chr3.3:91168629-91168648 | None:intergenic | 50.0% |
| !! | TTATCAATTGGTGGTGGGGG+TGG | - | chr3.3:91168224-91168243 | MS.gene40257:CDS | 50.0% |
| CTGTTATCTGCTGCAGTGGG+TGG | - | chr3.3:91168473-91168492 | MS.gene40257:CDS | 55.0% | |
| GCAGCAGATAACAGCAGTGC+CGG | + | chr3.3:91168467-91168486 | None:intergenic | 55.0% | |
| GCCTTGTCTGTGTCTGAGGA+TGG | + | chr3.3:91168377-91168396 | None:intergenic | 55.0% | |
| GCTTGGGGCAGTGAAGTACA+AGG | - | chr3.3:91168793-91168812 | MS.gene40257:CDS | 55.0% | |
| GGCCAGTTCAGTGCAGATGA+AGG | - | chr3.3:91168644-91168663 | MS.gene40257:CDS | 55.0% | |
| GGGCTCTTTCTCAAGCAGGT+GGG | - | chr3.3:91168996-91169015 | MS.gene40257:CDS | 55.0% | |
| TGCAGCTTCTCTAGCATGGG+CGG | - | chr3.3:91169159-91169178 | MS.gene40257:CDS | 55.0% | |
| TGGGCTCTTTCTCAAGCAGG+TGG | - | chr3.3:91168995-91169014 | MS.gene40257:CDS | 55.0% | |
| ! | GTCTAGCAGTTCTGGCAAGC+CGG | - | chr3.3:91168445-91168464 | MS.gene40257:CDS | 55.0% |
| ! | TCTGCACTGAACTGGCCTGT+CGG | + | chr3.3:91168641-91168660 | None:intergenic | 55.0% |
| !! | GTTGGCCTTGTCTGTGTCTG+AGG | + | chr3.3:91168381-91168400 | None:intergenic | 55.0% |
| AGGAGCAGGTGGTTGTGTCG+TGG | + | chr3.3:91168609-91168628 | None:intergenic | 60.0% | |
| GCAGGTGGTTGTGTCGTGGT+TGG | + | chr3.3:91168605-91168624 | None:intergenic | 60.0% | |
| TGGTGGGGGTGGTCCTACTT+TGG | - | chr3.3:91168235-91168254 | MS.gene40257:CDS | 60.0% | |
| ! | CTGCACTGAACTGGCCTGTC+GGG | + | chr3.3:91168640-91168659 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 91167939 | 91169186 | 91167939 | ID=MS.gene40257 |
| chr3.3 | mRNA | 91167939 | 91169186 | 91167939 | ID=MS.gene40257.t1;Parent=MS.gene40257 |
| chr3.3 | exon | 91168112 | 91169186 | 91168112 | ID=MS.gene40257.t1.exon1;Parent=MS.gene40257.t1 |
| chr3.3 | CDS | 91168112 | 91169186 | 91168112 | ID=cds.MS.gene40257.t1;Parent=MS.gene40257.t1 |
| chr3.3 | exon | 91167939 | 91167961 | 91167939 | ID=MS.gene40257.t1.exon2;Parent=MS.gene40257.t1 |
| chr3.3 | CDS | 91167939 | 91167961 | 91167939 | ID=cds.MS.gene40257.t1;Parent=MS.gene40257.t1 |
| Gene Sequence |
| Protein sequence |
