Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40705.t1 | XP_013462048.1 | 95.9 | 364 | 15 | 0 | 1 | 364 | 1 | 364 | 1.90E-202 | 714.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40705.t1 | O81862 | 51.4 | 364 | 164 | 6 | 11 | 365 | 9 | 368 | 4.2e-94 | 346.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40705.t1 | I3STX0 | 95.9 | 364 | 15 | 0 | 1 | 364 | 1 | 364 | 1.4e-202 | 714.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43244 | MS.gene40705 | PPI |
| MS.gene40706 | MS.gene40705 | PPI |
| MS.gene036626 | MS.gene40705 | PPI |
| MS.gene40705 | MS.gene57747 | PPI |
| MS.gene72024 | MS.gene40705 | PPI |
| MS.gene40256 | MS.gene40705 | PPI |
| MS.gene58750 | MS.gene40705 | PPI |
| MS.gene021944 | MS.gene40705 | PPI |
| MS.gene40707 | MS.gene40705 | PPI |
| MS.gene041428 | MS.gene40705 | PPI |
| MS.gene055584 | MS.gene40705 | PPI |
| MS.gene014609 | MS.gene40705 | PPI |
| MS.gene40255 | MS.gene40705 | PPI |
| MS.gene44679 | MS.gene40705 | PPI |
| MS.gene40257 | MS.gene40705 | PPI |
| MS.gene72023 | MS.gene40705 | PPI |
| MS.gene40705 | MS.gene021954 | PPI |
| MS.gene72022 | MS.gene40705 | PPI |
| MS.gene44682 | MS.gene40705 | PPI |
| MS.gene014611 | MS.gene40705 | PPI |
| MS.gene014610 | MS.gene40705 | PPI |
| MS.gene48549 | MS.gene40705 | PPI |
| MS.gene53841 | MS.gene40705 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40705.t1 | MTR_3g110320 | 95.879 | 364 | 15 | 0 | 1 | 364 | 1 | 364 | 0.0 | 720 |
| MS.gene40705.t1 | MTR_3g110320 | 95.810 | 358 | 15 | 0 | 1 | 358 | 1 | 358 | 0.0 | 707 |
| MS.gene40705.t1 | MTR_3g110280 | 84.401 | 359 | 55 | 1 | 1 | 358 | 1 | 359 | 0.0 | 613 |
| MS.gene40705.t1 | MTR_4g116920 | 75.209 | 359 | 73 | 3 | 1 | 358 | 1 | 344 | 0.0 | 536 |
| MS.gene40705.t1 | MTR_1g013150 | 34.551 | 356 | 216 | 5 | 22 | 364 | 32 | 383 | 4.22e-64 | 209 |
| MS.gene40705.t1 | MTR_4g117040 | 36.927 | 371 | 206 | 10 | 9 | 361 | 6 | 366 | 1.04e-63 | 216 |
| MS.gene40705.t1 | MTR_4g117020 | 34.595 | 370 | 220 | 8 | 3 | 359 | 2 | 362 | 2.53e-62 | 213 |
| MS.gene40705.t1 | MTR_4g117030 | 35.843 | 332 | 193 | 7 | 41 | 359 | 1 | 325 | 3.94e-59 | 203 |
| MS.gene40705.t1 | MTR_4g117000 | 33.237 | 346 | 215 | 7 | 30 | 363 | 35 | 376 | 4.81e-57 | 190 |
| MS.gene40705.t1 | MTR_4g116990 | 34.857 | 350 | 208 | 7 | 30 | 363 | 37 | 382 | 1.54e-55 | 186 |
| MS.gene40705.t1 | MTR_4g117800 | 34.286 | 175 | 113 | 1 | 6 | 180 | 4 | 176 | 1.30e-25 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40705.t1 | AT4G19810 | 52.747 | 364 | 159 | 6 | 11 | 365 | 9 | 368 | 2.20e-122 | 358 |
| MS.gene40705.t1 | AT4G19810 | 52.747 | 364 | 159 | 6 | 11 | 365 | 9 | 368 | 2.20e-122 | 358 |
| MS.gene40705.t1 | AT4G19820 | 48.493 | 365 | 175 | 6 | 10 | 365 | 6 | 366 | 3.46e-107 | 319 |
| MS.gene40705.t1 | AT4G19800 | 45.349 | 344 | 176 | 5 | 25 | 360 | 2 | 341 | 2.02e-96 | 292 |
| MS.gene40705.t1 | AT4G19750 | 45.429 | 361 | 171 | 10 | 17 | 360 | 1 | 352 | 8.92e-94 | 285 |
| MS.gene40705.t1 | AT4G19760 | 44.744 | 371 | 175 | 10 | 17 | 363 | 1 | 365 | 3.39e-93 | 283 |
| MS.gene40705.t1 | AT4G19720 | 42.254 | 355 | 180 | 7 | 29 | 365 | 5 | 352 | 3.70e-86 | 265 |
| MS.gene40705.t1 | AT4G19730 | 40.588 | 340 | 169 | 8 | 17 | 331 | 1 | 332 | 9.04e-70 | 222 |
| MS.gene40705.t1 | AT4G19770 | 42.969 | 256 | 136 | 4 | 113 | 360 | 1 | 254 | 2.26e-60 | 195 |
| MS.gene40705.t1 | AT4G19740 | 35.897 | 195 | 103 | 6 | 136 | 316 | 24 | 210 | 3.87e-29 | 112 |
Find 91 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATGAAAGTTGTTATTTC+TGG | 0.111144 | 3.2:+88463441 | None:intergenic |
| CTATAAATTCTACGGTTATT+AGG | 0.196560 | 3.2:+88463016 | None:intergenic |
| AGCAGGTGTGCTAGCCATTT+TGG | 0.198072 | 3.2:+88463501 | None:intergenic |
| CACCACCACCAATTGATAAA+AGG | 0.221663 | 3.2:+88463551 | None:intergenic |
| CAGATGAAGGTATCAATAAA+TGG | 0.236425 | 3.2:-88463114 | MS.gene40705:CDS |
| TAGCATTTGTAGAGGAAAAT+TGG | 0.237789 | 3.2:+88463770 | None:intergenic |
| ACTCAAAATTACTGCTTCAT+AGG | 0.281254 | 3.2:-88462911 | MS.gene40705:CDS |
| GCCAAGCAAAATGGATTGTT+TGG | 0.285497 | 3.2:-88462833 | MS.gene40705:CDS |
| GTTATTTACGCCAAGCAAAA+TGG | 0.298936 | 3.2:-88462842 | MS.gene40705:CDS |
| GCACTTGGCTTACCCTACTA+TGG | 0.305005 | 3.2:-88463061 | MS.gene40705:CDS |
| GAGAATCTTGCTGCGTTTGC+AGG | 0.311099 | 3.2:+88463619 | None:intergenic |
| TCTCCACTTGTAACCATAGT+AGG | 0.337636 | 3.2:+88463048 | None:intergenic |
| ACCACAGAGGCTAGGAGTTC+CGG | 0.350008 | 3.2:-88463334 | MS.gene40705:CDS |
| TACTCTTTGCCTGAACAGTT+TGG | 0.353606 | 3.2:+88463587 | None:intergenic |
| ATATTGCACAAGACAGCAAC+TGG | 0.360880 | 3.2:-88462796 | MS.gene40705:CDS |
| ACTCTTTGCCTGAACAGTTT+GGG | 0.393044 | 3.2:+88463588 | None:intergenic |
| TAACAACAGTGCCGGCTTGC+CGG | 0.396736 | 3.2:+88463315 | None:intergenic |
| TTCATGGCCTTGATCTTGAC+TGG | 0.404722 | 3.2:-88463426 | MS.gene40705:CDS |
| GCCAGAAATAACAACTTTCA+TGG | 0.408115 | 3.2:-88463442 | MS.gene40705:CDS |
| CTATCATCAAAGGTGGCTAT+TGG | 0.409298 | 3.2:-88463750 | MS.gene40705:CDS |
| AGTAAAGCTACGCAGGGACT+AGG | 0.428936 | 3.2:-88462995 | MS.gene40705:CDS |
| TGTTGCAAACAACTTGGATT+GGG | 0.430200 | 3.2:-88463233 | MS.gene40705:CDS |
| GTAAAGCTACGCAGGGACTA+GGG | 0.431578 | 3.2:-88462994 | MS.gene40705:CDS |
| TGGTGGTGGTGGCCCTACTC+TGG | 0.434515 | 3.2:-88463536 | MS.gene40705:CDS |
| ATCAATAAATGGGTAGGGTT+AGG | 0.436423 | 3.2:-88463103 | MS.gene40705:CDS |
| GACGCAGAAAAGGCCAACTT+TGG | 0.449817 | 3.2:-88463388 | MS.gene40705:CDS |
| AACCTTCACCCAAACTGTTC+AGG | 0.452083 | 3.2:-88463596 | MS.gene40705:CDS |
| AAACAAGTGGGTGAAGTAAG+AGG | 0.455014 | 3.2:+88463690 | None:intergenic |
| ACCACCACCAATTGATAAAA+GGG | 0.456743 | 3.2:+88463552 | None:intergenic |
| CTGCACTGAACAAGCCAGTT+GGG | 0.459093 | 3.2:+88463134 | None:intergenic |
| CTCAAAATTACTGCTTCATA+GGG | 0.461311 | 3.2:-88462910 | MS.gene40705:CDS |
| TTATCAATTGGTGGTGGTGG+TGG | 0.465433 | 3.2:-88463547 | MS.gene40705:CDS |
| AACTGGGCTCTTTCTGAAGC+AGG | 0.469880 | 3.2:-88462779 | MS.gene40705:intron |
| ATGTTGCAAACAACTTGGAT+TGG | 0.470996 | 3.2:-88463234 | MS.gene40705:CDS |
| ACTGCTTCATAGGGACAGAT+TGG | 0.474272 | 3.2:-88462901 | MS.gene40705:CDS |
| TCTGATTAGTGAACCAAAGT+TGG | 0.474919 | 3.2:+88463375 | None:intergenic |
| TCAAGATGTTGCAAACAACT+TGG | 0.478830 | 3.2:-88463239 | MS.gene40705:CDS |
| TCCATCCTCTGACGCAGAAA+AGG | 0.482858 | 3.2:-88463398 | MS.gene40705:CDS |
| GCGGGTGGTTGTGTTTGAGT+TGG | 0.482952 | 3.2:+88463169 | None:intergenic |
| GATAACTATCTGAAATGAAA+AGG | 0.483356 | 3.2:+88463191 | None:intergenic |
| TTGGTTCACTAATCAGAGAA+TGG | 0.486996 | 3.2:-88463369 | MS.gene40705:CDS |
| GGCTATTGGTATTCTGATAG+TGG | 0.488891 | 3.2:-88463736 | MS.gene40705:CDS |
| TAGCTTTACTATAAATTCTA+CGG | 0.491563 | 3.2:+88463008 | None:intergenic |
| CTATGGTTACAAGTGGAGAT+TGG | 0.494965 | 3.2:-88463044 | MS.gene40705:CDS |
| TGCTGCGTTTGCAGGAGAAA+TGG | 0.503017 | 3.2:+88463627 | None:intergenic |
| TCATGGCCTTGATCTTGACT+GGG | 0.503034 | 3.2:-88463425 | MS.gene40705:CDS |
| TTGCAGCTTCTCGAAACTGG+GGG | 0.508062 | 3.2:-88461754 | MS.gene40705:intron |
| AGATGAAGGTATCAATAAAT+GGG | 0.508361 | 3.2:-88463113 | MS.gene40705:CDS |
| GGCTAGGAGTTCCGGCAAGC+CGG | 0.510084 | 3.2:-88463326 | MS.gene40705:CDS |
| GAAGGTATCAATAAATGGGT+AGG | 0.514625 | 3.2:-88463109 | MS.gene40705:CDS |
| AGTTGTTATTTCTGGCTACT+CGG | 0.517027 | 3.2:+88463449 | None:intergenic |
| AAAATGGCTAGCACACCTGC+TGG | 0.526569 | 3.2:-88463499 | MS.gene40705:CDS |
| TGCCTGAACAGTTTGGGTGA+AGG | 0.526889 | 3.2:+88463594 | None:intergenic |
| CACTCAAAGTATAGCTAACA+AGG | 0.528080 | 3.2:-88462864 | MS.gene40705:CDS |
| TCTACAAATGCTATCATCAA+AGG | 0.542648 | 3.2:-88463760 | MS.gene40705:CDS |
| CTTGGTTGGTAGCAGTATCA+AGG | 0.547278 | 3.2:+88463653 | None:intergenic |
| TTGTTTGCAACATCTTGACC+TGG | 0.548598 | 3.2:+88463244 | None:intergenic |
| TTGTTATCTGCTGCAGTAGG+TGG | 0.549211 | 3.2:-88463298 | MS.gene40705:CDS |
| CTGCCGTGACCACAGAGGCT+AGG | 0.554571 | 3.2:-88463342 | MS.gene40705:CDS |
| CTGTTGTTATCTGCTGCAGT+AGG | 0.558516 | 3.2:-88463301 | MS.gene40705:CDS |
| AATTTATAGTAAAGCTACGC+AGG | 0.562146 | 3.2:-88463002 | MS.gene40705:CDS |
| GATACTCCCAGTCAAGATCA+AGG | 0.567638 | 3.2:+88463419 | None:intergenic |
| CTCCACTTGTAACCATAGTA+GGG | 0.567864 | 3.2:+88463049 | None:intergenic |
| TCTGCACTGAACAAGCCAGT+TGG | 0.568233 | 3.2:+88463133 | None:intergenic |
| AAGGTATCAATAAATGGGTA+GGG | 0.575326 | 3.2:-88463108 | MS.gene40705:CDS |
| CAGCAAATGCACAAAACAAG+TGG | 0.579073 | 3.2:+88463677 | None:intergenic |
| AACAAGTGGGTGAAGTAAGA+GGG | 0.579563 | 3.2:+88463691 | None:intergenic |
| GGCTTGTTCAGTGCAGATGA+AGG | 0.580026 | 3.2:-88463127 | MS.gene40705:CDS |
| TTTGATGATAGCATTTGTAG+AGG | 0.581947 | 3.2:+88463762 | None:intergenic |
| ACTCCTAGCCTCTGTGGTCA+CGG | 0.583379 | 3.2:+88463339 | None:intergenic |
| TTGCAGGAGAAATGGTGACT+TGG | 0.587435 | 3.2:+88463635 | None:intergenic |
| TTTGCAGCTTCTCGAAACTG+GGG | 0.596539 | 3.2:-88461755 | MS.gene40705:intron |
| GCAGCAGATAACAACAGTGC+CGG | 0.602120 | 3.2:+88463307 | None:intergenic |
| TGAGGAGAGTGGAAATCAAG+AGG | 0.606133 | 3.2:+88463806 | None:intergenic |
| TTCATAGGGACAGATTGGTA+TGG | 0.606399 | 3.2:-88462896 | MS.gene40705:CDS |
| TACCCTACTATGGTTACAAG+TGG | 0.610838 | 3.2:-88463051 | MS.gene40705:CDS |
| ATTTATAGTAAAGCTACGCA+GGG | 0.611007 | 3.2:-88463001 | MS.gene40705:CDS |
| GATTAATATCAGAAGCTGCA+AGG | 0.615788 | 3.2:+88463713 | None:intergenic |
| TTCGAGAATCATGAGGAGAG+TGG | 0.619692 | 3.2:+88463795 | None:intergenic |
| AGGAGAAATGGTGACTTGGT+TGG | 0.620808 | 3.2:+88463639 | None:intergenic |
| TGCAGCTTCTCGAAACTGGG+GGG | 0.625304 | 3.2:-88461753 | MS.gene40705:intron |
| TAAAGCTACGCAGGGACTAG+GGG | 0.627917 | 3.2:-88462993 | MS.gene40705:CDS |
| ACTAGGGGCAGTGAAGTACA+AGG | 0.628451 | 3.2:-88462978 | MS.gene40705:CDS |
| AGCAAATGCACAAAACAAGT+GGG | 0.646781 | 3.2:+88463678 | None:intergenic |
| GCCGGAACTCCTAGCCTCTG+TGG | 0.649064 | 3.2:+88463333 | None:intergenic |
| TGTTTGCAACATCTTGACCT+GGG | 0.652675 | 3.2:+88463245 | None:intergenic |
| ACAAATGCTATCATCAAAGG+TGG | 0.658438 | 3.2:-88463757 | MS.gene40705:CDS |
| ATTGGAGTTCGAGAATCATG+AGG | 0.661701 | 3.2:+88463788 | None:intergenic |
| TATTGCACAAGACAGCAACT+GGG | 0.677576 | 3.2:-88462795 | MS.gene40705:CDS |
| ACTCCACTAAAATACTACCC+AGG | 0.700599 | 3.2:-88463262 | MS.gene40705:CDS |
| GAGAGCTGCCGTGACCACAG+AGG | 0.748821 | 3.2:-88463347 | MS.gene40705:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTGTTTGTTTTAAAAT+GGG | - | chr3.2:88463706-88463725 | MS.gene40705:CDS | 10.0% |
| !!! | TTTTATTGTTTGTTTTAAAA+TGG | - | chr3.2:88463705-88463724 | MS.gene40705:CDS | 10.0% |
| !! | TATATTGTAAAAACAAAACT+AGG | - | chr3.2:88463632-88463651 | MS.gene40705:CDS | 15.0% |
| !!! | ATTGATTAATTTGTTTTTTG+AGG | + | chr3.2:88463576-88463595 | None:intergenic | 15.0% |
| !!! | TTGATTAATTTGTTTTTTGA+GGG | + | chr3.2:88463575-88463594 | None:intergenic | 15.0% |
| !! | AAAACAAACAATAAAATCAG+TGG | + | chr3.2:88463701-88463720 | None:intergenic | 20.0% |
| !! | GAGTGAAATTTATAACTATA+AGG | + | chr3.2:88463490-88463509 | None:intergenic | 20.0% |
| !! | GGAACTAAAAAAAACTAATA+AGG | + | chr3.2:88463469-88463488 | None:intergenic | 20.0% |
| !! | TACAAGGATATAAAAAATAC+TGG | - | chr3.2:88462618-88462637 | MS.gene40705:intron | 20.0% |
| !!! | AAGAATCTATGAATGATTTT+CGG | + | chr3.2:88462107-88462126 | None:intergenic | 20.0% |
| !!! | TAGCTTTACTATAAATTCTA+CGG | + | chr3.2:88462575-88462594 | None:intergenic | 20.0% |
| !!! | TGATTAATTTGTTTTTTGAG+GGG | + | chr3.2:88463574-88463593 | None:intergenic | 20.0% |
| !!! | TTTTCATAAAGATATTAGCA+GGG | + | chr3.2:88463057-88463076 | None:intergenic | 20.0% |
| !!! | TTTTTACTCAAGTAATAAGT+GGG | + | chr3.2:88463674-88463693 | None:intergenic | 20.0% |
| !!! | TTTTTTACTCAAGTAATAAG+TGG | + | chr3.2:88463675-88463694 | None:intergenic | 20.0% |
| ! | AAGGATATAAAAAATACTGG+AGG | - | chr3.2:88462621-88462640 | MS.gene40705:intron | 25.0% |
| ! | AGGATATAAAAAATACTGGA+GGG | - | chr3.2:88462622-88462641 | MS.gene40705:intron | 25.0% |
| ! | CAATGAAACTGTGTTTAATT+AGG | + | chr3.2:88462848-88462867 | None:intergenic | 25.0% |
| ! | CTATAAATTCTACGGTTATT+AGG | + | chr3.2:88462567-88462586 | None:intergenic | 25.0% |
| ! | TAATTCGTGCATATATAACT+AGG | - | chr3.2:88462916-88462935 | MS.gene40705:CDS | 25.0% |
| ! | TACTTATTCAACTAAGCAAA+AGG | + | chr3.2:88463274-88463293 | None:intergenic | 25.0% |
| !! | CTTTTCATAAAGATATTAGC+AGG | + | chr3.2:88463058-88463077 | None:intergenic | 25.0% |
| !! | GATAACTATCTGAAATGAAA+AGG | + | chr3.2:88462392-88462411 | None:intergenic | 25.0% |
| !!! | AGATGAAGGTATCAATAAAT+GGG | - | chr3.2:88462467-88462486 | MS.gene40705:intron | 25.0% |
| AAAAAAAGAGTCACATGGTT+TGG | - | chr3.2:88463750-88463769 | MS.gene40705:CDS | 30.0% | |
| AAGTAATAAGTGGGATGTTT+AGG | + | chr3.2:88463665-88463684 | None:intergenic | 30.0% | |
| AATTTATAGTAAAGCTACGC+AGG | - | chr3.2:88462578-88462597 | MS.gene40705:intron | 30.0% | |
| ACTCAAAATTACTGCTTCAT+AGG | - | chr3.2:88462669-88462688 | MS.gene40705:intron | 30.0% | |
| ATGCACCAGAATTATTTACT+TGG | - | chr3.2:88463085-88463104 | MS.gene40705:CDS | 30.0% | |
| ATTTATAGTAAAGCTACGCA+GGG | - | chr3.2:88462579-88462598 | MS.gene40705:intron | 30.0% | |
| CCAAAAAATAAACTTGCACT+TGG | - | chr3.2:88462504-88462523 | MS.gene40705:intron | 30.0% | |
| CTAGGAGTAATTAGTTAAAG+AGG | - | chr3.2:88462934-88462953 | MS.gene40705:CDS | 30.0% | |
| CTCAAAATTACTGCTTCATA+GGG | - | chr3.2:88462670-88462689 | MS.gene40705:intron | 30.0% | |
| GCTTAAATAAGACTCATTCT+TGG | - | chr3.2:88463236-88463255 | MS.gene40705:CDS | 30.0% | |
| TAGCATTTGTAGAGGAAAAT+TGG | + | chr3.2:88461813-88461832 | None:intergenic | 30.0% | |
| TCTACAAATGCTATCATCAA+AGG | - | chr3.2:88461820-88461839 | MS.gene40705:intron | 30.0% | |
| TGTGACCAAGTAAATAATTC+TGG | + | chr3.2:88463093-88463112 | None:intergenic | 30.0% | |
| ! | AAAACCCTTTTATCAATTGG+TGG | - | chr3.2:88462024-88462043 | MS.gene40705:intron | 30.0% |
| ! | AAACAACACAACACTTTTGT+CGG | + | chr3.2:88463305-88463324 | None:intergenic | 30.0% |
| ! | AAGGTATCAATAAATGGGTA+GGG | - | chr3.2:88462472-88462491 | MS.gene40705:intron | 30.0% |
| ! | GATTGTTTGGATATTTTGCT+TGG | - | chr3.2:88462760-88462779 | MS.gene40705:intron | 30.0% |
| ! | GTGAAAACCCTTTTATCAAT+TGG | - | chr3.2:88462021-88462040 | MS.gene40705:intron | 30.0% |
| ! | TTTGATGATAGCATTTGTAG+AGG | + | chr3.2:88461821-88461840 | None:intergenic | 30.0% |
| !! | CAGATGAAGGTATCAATAAA+TGG | - | chr3.2:88462466-88462485 | MS.gene40705:intron | 30.0% |
| !! | GCAGTAATTTTGAGTATATG+TGG | + | chr3.2:88462664-88462683 | None:intergenic | 30.0% |
| !!! | AAACCATGTGACTCTTTTTT+TGG | + | chr3.2:88463751-88463770 | None:intergenic | 30.0% |
| !!! | AACCATGTGACTCTTTTTTT+GGG | + | chr3.2:88463750-88463769 | None:intergenic | 30.0% |
| !!! | CCAAGTGCAAGTTTATTTTT+TGG | + | chr3.2:88462507-88462526 | None:intergenic | 30.0% |
| !!! | TTGTTTTAAAATGGGTCACA+CGG | - | chr3.2:88463714-88463733 | MS.gene40705:CDS | 30.0% |
| AAAATTGACGCCAAAATGAC+TGG | + | chr3.2:88463408-88463427 | None:intergenic | 35.0% | |
| ACAAATGCTATCATCAAAGG+TGG | - | chr3.2:88461823-88461842 | MS.gene40705:intron | 35.0% | |
| ACCACCACCAATTGATAAAA+GGG | + | chr3.2:88462031-88462050 | None:intergenic | 35.0% | |
| AGCAAATGCACAAAACAAGT+GGG | + | chr3.2:88461905-88461924 | None:intergenic | 35.0% | |
| ATCAATAAATGGGTAGGGTT+AGG | - | chr3.2:88462477-88462496 | MS.gene40705:intron | 35.0% | |
| ATGTTGCAAACAACTTGGAT+TGG | - | chr3.2:88462346-88462365 | MS.gene40705:intron | 35.0% | |
| CACTCAAAGTATAGCTAACA+AGG | - | chr3.2:88462716-88462735 | MS.gene40705:intron | 35.0% | |
| CTTAACCGACACTATATCTA+GGG | - | chr3.2:88463358-88463377 | MS.gene40705:CDS | 35.0% | |
| GATTAATATCAGAAGCTGCA+AGG | + | chr3.2:88461870-88461889 | None:intergenic | 35.0% | |
| GCCAGAAATAACAACTTTCA+TGG | - | chr3.2:88462138-88462157 | MS.gene40705:intron | 35.0% | |
| GGCACAAAAATATGCCAAAA+TGG | - | chr3.2:88462065-88462084 | MS.gene40705:intron | 35.0% | |
| GTTATTTACGCCAAGCAAAA+TGG | - | chr3.2:88462738-88462757 | MS.gene40705:intron | 35.0% | |
| TAGAGTGACTCATTGTTAGT+CGG | + | chr3.2:88463784-88463803 | None:intergenic | 35.0% | |
| TCAAGATGTTGCAAACAACT+TGG | - | chr3.2:88462341-88462360 | MS.gene40705:intron | 35.0% | |
| TCTGATTAGTGAACCAAAGT+TGG | + | chr3.2:88462208-88462227 | None:intergenic | 35.0% | |
| TGTTGCAAACAACTTGGATT+GGG | - | chr3.2:88462347-88462366 | MS.gene40705:intron | 35.0% | |
| TTGGTTCACTAATCAGAGAA+TGG | - | chr3.2:88462211-88462230 | MS.gene40705:intron | 35.0% | |
| ! | TCCAAACAATCCATTTTGCT+TGG | + | chr3.2:88462751-88462770 | None:intergenic | 35.0% |
| ! | TGCAAGTAAACCAGTCATTT+TGG | - | chr3.2:88463395-88463414 | MS.gene40705:CDS | 35.0% |
| !! | AAGAGGCTTGCTAATCTTTA+AGG | - | chr3.2:88462951-88462970 | MS.gene40705:CDS | 35.0% |
| !! | AGTTGTTATTTCTGGCTACT+CGG | + | chr3.2:88462134-88462153 | None:intergenic | 35.0% |
| !! | CATATTTTTGTGCCAGAGTA+GGG | + | chr3.2:88462059-88462078 | None:intergenic | 35.0% |
| !! | CTAGATATAGTGTCGGTTAA+GGG | + | chr3.2:88463359-88463378 | None:intergenic | 35.0% |
| !! | GAAGGTATCAATAAATGGGT+AGG | - | chr3.2:88462471-88462490 | MS.gene40705:intron | 35.0% |
| !! | GCCATGAAAGTTGTTATTTC+TGG | + | chr3.2:88462142-88462161 | None:intergenic | 35.0% |
| !! | TAGATATAGTGTCGGTTAAG+GGG | + | chr3.2:88463358-88463377 | None:intergenic | 35.0% |
| AAACAAGTGGGTGAAGTAAG+AGG | + | chr3.2:88461893-88461912 | None:intergenic | 40.0% | |
| AACAAGTGGGTGAAGTAAGA+GGG | + | chr3.2:88461892-88461911 | None:intergenic | 40.0% | |
| ACTCCACTAAAATACTACCC+AGG | - | chr3.2:88462318-88462337 | MS.gene40705:intron | 40.0% | |
| ACTCTTTGCCTGAACAGTTT+GGG | + | chr3.2:88461995-88462014 | None:intergenic | 40.0% | |
| AGAGTGACTCATTGTTAGTC+GGG | + | chr3.2:88463783-88463802 | None:intergenic | 40.0% | |
| ATATTGCACAAGACAGCAAC+TGG | - | chr3.2:88462784-88462803 | MS.gene40705:CDS | 40.0% | |
| ATTGGAGTTCGAGAATCATG+AGG | + | chr3.2:88461795-88461814 | None:intergenic | 40.0% | |
| CACCACCACCAATTGATAAA+AGG | + | chr3.2:88462032-88462051 | None:intergenic | 40.0% | |
| CACCCAAAAAAAGAGTCACA+TGG | - | chr3.2:88463745-88463764 | MS.gene40705:CDS | 40.0% | |
| CAGCAAATGCACAAAACAAG+TGG | + | chr3.2:88461906-88461925 | None:intergenic | 40.0% | |
| CCTTAACCGACACTATATCT+AGG | - | chr3.2:88463357-88463376 | MS.gene40705:CDS | 40.0% | |
| CTATCATCAAAGGTGGCTAT+TGG | - | chr3.2:88461830-88461849 | MS.gene40705:intron | 40.0% | |
| CTATGGTTACAAGTGGAGAT+TGG | - | chr3.2:88462536-88462555 | MS.gene40705:intron | 40.0% | |
| CTCCACTTGTAACCATAGTA+GGG | + | chr3.2:88462534-88462553 | None:intergenic | 40.0% | |
| GGCTATTGGTATTCTGATAG+TGG | - | chr3.2:88461844-88461863 | MS.gene40705:intron | 40.0% | |
| TACCCTACTATGGTTACAAG+TGG | - | chr3.2:88462529-88462548 | MS.gene40705:intron | 40.0% | |
| TACTCTTTGCCTGAACAGTT+TGG | + | chr3.2:88461996-88462015 | None:intergenic | 40.0% | |
| TATTGCACAAGACAGCAACT+GGG | - | chr3.2:88462785-88462804 | MS.gene40705:CDS | 40.0% | |
| TCTCCACTTGTAACCATAGT+AGG | + | chr3.2:88462535-88462554 | None:intergenic | 40.0% | |
| TGTTTGCAACATCTTGACCT+GGG | + | chr3.2:88462338-88462357 | None:intergenic | 40.0% | |
| TTCATAGGGACAGATTGGTA+TGG | - | chr3.2:88462684-88462703 | MS.gene40705:intron | 40.0% | |
| TTGTTTGCAACATCTTGACC+TGG | + | chr3.2:88462339-88462358 | None:intergenic | 40.0% | |
| ! | ACCCTTTTATCAATTGGTGG+TGG | - | chr3.2:88462027-88462046 | MS.gene40705:intron | 40.0% |
| ! | CAAGAGGAACGAATGCTTTT+TGG | + | chr3.2:88461761-88461780 | None:intergenic | 40.0% |
| ! | TTTTGCAGCTTCTCGAAACT+GGG | - | chr3.2:88463824-88463843 | MS.gene40705:CDS | 40.0% |
| ! | TTTTTGCAGCTTCTCGAAAC+TGG | - | chr3.2:88463823-88463842 | MS.gene40705:CDS | 40.0% |
| !! | AAGCCAGTTGGGTTTTTCAA+AGG | + | chr3.2:88462438-88462457 | None:intergenic | 40.0% |
| !! | AGTTGGGTTTTTCAAAGGAG+CGG | + | chr3.2:88462433-88462452 | None:intergenic | 40.0% |
| !! | CCTAGATATAGTGTCGGTTA+AGG | + | chr3.2:88463360-88463379 | None:intergenic | 40.0% |
| !! | GCATATTTTTGTGCCAGAGT+AGG | + | chr3.2:88462060-88462079 | None:intergenic | 40.0% |
| !! | GCCAAGCAAAATGGATTGTT+TGG | - | chr3.2:88462747-88462766 | MS.gene40705:intron | 40.0% |
| !! | TGACCTGGGTAGTATTTTAG+TGG | + | chr3.2:88462324-88462343 | None:intergenic | 40.0% |
| !!! | CATGTGACTCTTTTTTTGGG+TGG | + | chr3.2:88463747-88463766 | None:intergenic | 40.0% |
| !!! | CTTTTATCAATTGGTGGTGG+TGG | - | chr3.2:88462030-88462049 | MS.gene40705:intron | 40.0% |
| AACCTTCACCCAAACTGTTC+AGG | - | chr3.2:88461984-88462003 | MS.gene40705:intron | 45.0% | |
| ACTATGAGAGATGAGTTGCC+TGG | - | chr3.2:88463329-88463348 | MS.gene40705:CDS | 45.0% | |
| ACTGCTTCATAGGGACAGAT+TGG | - | chr3.2:88462679-88462698 | MS.gene40705:intron | 45.0% | |
| CTGTTGTTATCTGCTGCAGT+AGG | - | chr3.2:88462279-88462298 | MS.gene40705:intron | 45.0% | |
| GAGTGACTCATTGTTAGTCG+GGG | + | chr3.2:88463782-88463801 | None:intergenic | 45.0% | |
| GATACTCCCAGTCAAGATCA+AGG | + | chr3.2:88462164-88462183 | None:intergenic | 45.0% | |
| TGAGGAGAGTGGAAATCAAG+AGG | + | chr3.2:88461777-88461796 | None:intergenic | 45.0% | |
| TTCGAGAATCATGAGGAGAG+TGG | + | chr3.2:88461788-88461807 | None:intergenic | 45.0% | |
| TTGCAGGAGAAATGGTGACT+TGG | + | chr3.2:88461948-88461967 | None:intergenic | 45.0% | |
| TTGTTATCTGCTGCAGTAGG+TGG | - | chr3.2:88462282-88462301 | MS.gene40705:intron | 45.0% | |
| TTTGCAGCTTCTCGAAACTG+GGG | - | chr3.2:88463825-88463844 | MS.gene40705:CDS | 45.0% | |
| ! | ATGAATGATTTTCGGCCAGC+AGG | + | chr3.2:88462099-88462118 | None:intergenic | 45.0% |
| ! | CAACACAACACTTTTGTCGG+TGG | + | chr3.2:88463302-88463321 | None:intergenic | 45.0% |
| ! | GCTCCTTTGAAAAACCCAAC+TGG | - | chr3.2:88462432-88462451 | MS.gene40705:intron | 45.0% |
| ! | TCATGGCCTTGATCTTGACT+GGG | - | chr3.2:88462155-88462174 | MS.gene40705:intron | 45.0% |
| ! | TTCATGGCCTTGATCTTGAC+TGG | - | chr3.2:88462154-88462173 | MS.gene40705:intron | 45.0% |
| !! | AGGAGAAATGGTGACTTGGT+TGG | + | chr3.2:88461944-88461963 | None:intergenic | 45.0% |
| !! | CTTGGTTGGTAGCAGTATCA+AGG | + | chr3.2:88461930-88461949 | None:intergenic | 45.0% |
| !! | GTTGGGTTTTTCAAAGGAGC+GGG | + | chr3.2:88462432-88462451 | None:intergenic | 45.0% |
| !! | TTATCAATTGGTGGTGGTGG+TGG | - | chr3.2:88462033-88462052 | MS.gene40705:intron | 45.0% |
| AAAATGGCTAGCACACCTGC+TGG | - | chr3.2:88462081-88462100 | MS.gene40705:intron | 50.0% | |
| ACTAGGGGCAGTGAAGTACA+AGG | - | chr3.2:88462602-88462621 | MS.gene40705:intron | 50.0% | |
| AGTAAAGCTACGCAGGGACT+AGG | - | chr3.2:88462585-88462604 | MS.gene40705:intron | 50.0% | |
| CTGCACTGAACAAGCCAGTT+GGG | + | chr3.2:88462449-88462468 | None:intergenic | 50.0% | |
| GACGCAGAAAAGGCCAACTT+TGG | - | chr3.2:88462192-88462211 | MS.gene40705:intron | 50.0% | |
| GACTCATTGTTAGTCGGGGA+TGG | + | chr3.2:88463778-88463797 | None:intergenic | 50.0% | |
| GAGAATCTTGCTGCGTTTGC+AGG | + | chr3.2:88461964-88461983 | None:intergenic | 50.0% | |
| GCACTTGGCTTACCCTACTA+TGG | - | chr3.2:88462519-88462538 | MS.gene40705:intron | 50.0% | |
| GCAGCAGATAACAACAGTGC+CGG | + | chr3.2:88462276-88462295 | None:intergenic | 50.0% | |
| GCCAGCCCTAGATATAGTGT+CGG | + | chr3.2:88463366-88463385 | None:intergenic | 50.0% | |
| GTAAAGCTACGCAGGGACTA+GGG | - | chr3.2:88462586-88462605 | MS.gene40705:intron | 50.0% | |
| TAAAGCTACGCAGGGACTAG+GGG | - | chr3.2:88462587-88462606 | MS.gene40705:intron | 50.0% | |
| TCCATCCTCTGACGCAGAAA+AGG | - | chr3.2:88462182-88462201 | MS.gene40705:intron | 50.0% | |
| TCTGCACTGAACAAGCCAGT+TGG | + | chr3.2:88462450-88462469 | None:intergenic | 50.0% | |
| TGCCTGAACAGTTTGGGTGA+AGG | + | chr3.2:88461989-88462008 | None:intergenic | 50.0% | |
| TGCTGCGTTTGCAGGAGAAA+TGG | + | chr3.2:88461956-88461975 | None:intergenic | 50.0% | |
| TTGCAGCTTCTCGAAACTGG+GGG | - | chr3.2:88463826-88463845 | MS.gene40705:CDS | 50.0% | |
| ! | ACCGACACTATATCTAGGGC+TGG | - | chr3.2:88463362-88463381 | MS.gene40705:CDS | 50.0% |
| ! | AGCAGGTGTGCTAGCCATTT+TGG | + | chr3.2:88462082-88462101 | None:intergenic | 50.0% |
| ! | ATATCTAGGGCTGGCACATG+AGG | - | chr3.2:88463371-88463390 | MS.gene40705:CDS | 50.0% |
| ! | GGCTTGTTCAGTGCAGATGA+AGG | - | chr3.2:88462453-88462472 | MS.gene40705:intron | 50.0% |
| ! | TCTGAAGCAGGTCGGTACAT+AGG | - | chr3.2:88462813-88462832 | MS.gene40705:CDS | 50.0% |
| !! | AACTGGGCTCTTTCTGAAGC+AGG | - | chr3.2:88462801-88462820 | MS.gene40705:CDS | 50.0% |
| ACCACAGAGGCTAGGAGTTC+CGG | - | chr3.2:88462246-88462265 | MS.gene40705:intron | 55.0% | |
| ACTCCTAGCCTCTGTGGTCA+CGG | + | chr3.2:88462244-88462263 | None:intergenic | 55.0% | |
| GCGGGTGGTTGTGTTTGAGT+TGG | + | chr3.2:88462414-88462433 | None:intergenic | 55.0% | |
| TGCAGCTTCTCGAAACTGGG+GGG | - | chr3.2:88463827-88463846 | MS.gene40705:CDS | 55.0% | |
| ! | GCCTTTTCTGCGTCAGAGGA+TGG | + | chr3.2:88462186-88462205 | None:intergenic | 55.0% |
| !! | GGGCTCTTTCTGAAGCAGGT+CGG | - | chr3.2:88462805-88462824 | MS.gene40705:CDS | 55.0% |
| !! | GGGTTTTTCAAAGGAGCGGG+TGG | + | chr3.2:88462429-88462448 | None:intergenic | 55.0% |
| !! | TAACAACAGTGCCGGCTTGC+CGG | + | chr3.2:88462268-88462287 | None:intergenic | 55.0% |
| !!! | GTTGGCCTTTTCTGCGTCAG+AGG | + | chr3.2:88462190-88462209 | None:intergenic | 55.0% |
| CTGCCGTGACCACAGAGGCT+AGG | - | chr3.2:88462238-88462257 | MS.gene40705:intron | 65.0% | |
| GAGAGCTGCCGTGACCACAG+AGG | - | chr3.2:88462233-88462252 | MS.gene40705:intron | 65.0% | |
| GCCGGAACTCCTAGCCTCTG+TGG | + | chr3.2:88462250-88462269 | None:intergenic | 65.0% | |
| GGCTAGGAGTTCCGGCAAGC+CGG | - | chr3.2:88462254-88462273 | MS.gene40705:intron | 65.0% | |
| !! | GTGTCGGTTAAGGGGCAGCC+AGG | + | chr3.2:88463350-88463369 | None:intergenic | 65.0% |
| !! | TGGTGGTGGTGGCCCTACTC+TGG | - | chr3.2:88462044-88462063 | MS.gene40705:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 88461748 | 88463854 | 88461748 | ID=MS.gene40705 |
| chr3.2 | mRNA | 88461748 | 88463854 | 88461748 | ID=MS.gene40705.t1;Parent=MS.gene40705 |
| chr3.2 | exon | 88462780 | 88463854 | 88462780 | ID=MS.gene40705.t1.exon1;Parent=MS.gene40705.t1 |
| chr3.2 | CDS | 88462780 | 88463854 | 88462780 | ID=cds.MS.gene40705.t1;Parent=MS.gene40705.t1 |
| chr3.2 | exon | 88461748 | 88461770 | 88461748 | ID=MS.gene40705.t1.exon2;Parent=MS.gene40705.t1 |
| chr3.2 | CDS | 88461748 | 88461770 | 88461748 | ID=cds.MS.gene40705.t1;Parent=MS.gene40705.t1 |
| Gene Sequence |
| Protein sequence |
