Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40255.t1 | XP_013462048.1 | 96.2 | 364 | 14 | 0 | 1 | 364 | 1 | 364 | 1.40E-202 | 715.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40255.t1 | O81862 | 51.1 | 364 | 165 | 6 | 11 | 365 | 9 | 368 | 6.1e-93 | 342.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40255.t1 | I3STX0 | 96.2 | 364 | 14 | 0 | 1 | 364 | 1 | 364 | 1.0e-202 | 715.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40255 | MS.gene72023 | PPI |
| MS.gene40255 | MS.gene72022 | PPI |
| MS.gene40255 | MS.gene53841 | PPI |
| MS.gene40255 | MS.gene40706 | PPI |
| MS.gene40255 | MS.gene021954 | PPI |
| MS.gene055584 | MS.gene40255 | PPI |
| MS.gene40255 | MS.gene48549 | PPI |
| MS.gene40255 | MS.gene014611 | PPI |
| MS.gene40255 | MS.gene014610 | PPI |
| MS.gene40255 | MS.gene036626 | PPI |
| MS.gene40255 | MS.gene40705 | PPI |
| MS.gene40255 | MS.gene44682 | PPI |
| MS.gene40255 | MS.gene40257 | PPI |
| MS.gene40255 | MS.gene44679 | PPI |
| MS.gene40255 | MS.gene055584 | PPI |
| MS.gene40255 | MS.gene57747 | PPI |
| MS.gene53841 | MS.gene40255 | PPI |
| MS.gene40255 | MS.gene40707 | PPI |
| MS.gene40255 | MS.gene041428 | PPI |
| MS.gene40255 | MS.gene58750 | PPI |
| MS.gene40255 | MS.gene021944 | PPI |
| MS.gene40706 | MS.gene40255 | PPI |
| MS.gene40255 | MS.gene72024 | PPI |
| MS.gene40255 | MS.gene40256 | PPI |
| MS.gene40255 | MS.gene43244 | PPI |
| MS.gene40255 | MS.gene014609 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40255.t1 | MTR_3g110320 | 96.154 | 364 | 14 | 0 | 1 | 364 | 1 | 364 | 0.0 | 722 |
| MS.gene40255.t1 | MTR_3g110320 | 96.089 | 358 | 14 | 0 | 1 | 358 | 1 | 358 | 0.0 | 709 |
| MS.gene40255.t1 | MTR_3g110280 | 84.958 | 359 | 53 | 1 | 1 | 358 | 1 | 359 | 0.0 | 619 |
| MS.gene40255.t1 | MTR_4g116920 | 75.487 | 359 | 72 | 3 | 1 | 358 | 1 | 344 | 0.0 | 539 |
| MS.gene40255.t1 | MTR_4g117040 | 37.197 | 371 | 205 | 10 | 9 | 361 | 6 | 366 | 1.14e-63 | 216 |
| MS.gene40255.t1 | MTR_1g013150 | 34.551 | 356 | 216 | 5 | 22 | 364 | 32 | 383 | 4.25e-63 | 206 |
| MS.gene40255.t1 | MTR_4g117020 | 35.580 | 371 | 215 | 9 | 3 | 359 | 2 | 362 | 1.65e-62 | 213 |
| MS.gene40255.t1 | MTR_4g117030 | 36.637 | 333 | 189 | 8 | 41 | 359 | 1 | 325 | 2.54e-59 | 204 |
| MS.gene40255.t1 | MTR_4g117000 | 33.526 | 346 | 214 | 7 | 30 | 363 | 35 | 376 | 5.13e-57 | 190 |
| MS.gene40255.t1 | MTR_4g116990 | 34.857 | 350 | 208 | 7 | 30 | 363 | 37 | 382 | 9.03e-55 | 184 |
| MS.gene40255.t1 | MTR_4g117800 | 35.227 | 176 | 110 | 2 | 6 | 180 | 4 | 176 | 6.21e-26 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40255.t1 | AT4G19810 | 52.473 | 364 | 160 | 6 | 11 | 365 | 9 | 368 | 1.78e-121 | 356 |
| MS.gene40255.t1 | AT4G19810 | 52.473 | 364 | 160 | 6 | 11 | 365 | 9 | 368 | 1.78e-121 | 356 |
| MS.gene40255.t1 | AT4G19820 | 48.493 | 365 | 175 | 6 | 10 | 365 | 6 | 366 | 1.33e-106 | 317 |
| MS.gene40255.t1 | AT4G19800 | 45.349 | 344 | 176 | 5 | 25 | 360 | 2 | 341 | 3.70e-96 | 292 |
| MS.gene40255.t1 | AT4G19750 | 45.429 | 361 | 171 | 10 | 17 | 360 | 1 | 352 | 3.14e-93 | 283 |
| MS.gene40255.t1 | AT4G19760 | 44.744 | 371 | 175 | 10 | 17 | 363 | 1 | 365 | 8.89e-93 | 282 |
| MS.gene40255.t1 | AT4G19720 | 42.254 | 355 | 180 | 7 | 29 | 365 | 5 | 352 | 2.35e-86 | 265 |
| MS.gene40255.t1 | AT4G19730 | 40.588 | 340 | 169 | 8 | 17 | 331 | 1 | 332 | 1.23e-69 | 221 |
| MS.gene40255.t1 | AT4G19770 | 42.969 | 256 | 136 | 4 | 113 | 360 | 1 | 254 | 9.87e-60 | 194 |
| MS.gene40255.t1 | AT4G19740 | 35.897 | 195 | 103 | 6 | 136 | 316 | 24 | 210 | 3.72e-29 | 112 |
Find 93 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATGAAAGTTGTTATTTC+TGG | 0.111144 | 3.3:+91194310 | None:intergenic |
| CTATAAATTCTACGGTTATT+AGG | 0.196560 | 3.3:+91193885 | None:intergenic |
| CAGATGAAGGTATCAATAAA+TGG | 0.236425 | 3.3:-91193983 | MS.gene40255:CDS |
| TCTACAAATGCTATCATTAA+AGG | 0.237326 | 3.3:-91194629 | MS.gene40255:CDS |
| TAGCATTTGTAGAGGAAAAT+TGG | 0.237789 | 3.3:+91194639 | None:intergenic |
| GCCAAGCAAAATGGATTGTT+TGG | 0.270489 | 3.3:-91193702 | MS.gene40255:CDS |
| GTTATTTATGCCAAGCAAAA+TGG | 0.277191 | 3.3:-91193711 | MS.gene40255:CDS |
| ACTCAAAATTACTGCTTCAT+AGG | 0.281254 | 3.3:-91193780 | MS.gene40255:CDS |
| GCACTTGGCTTACCCTACTA+TGG | 0.305005 | 3.3:-91193930 | MS.gene40255:CDS |
| TCTCCACTTGTAACCATAGT+AGG | 0.337636 | 3.3:+91193917 | None:intergenic |
| ACCACAGAGGCTAGGAGTTC+CGG | 0.350008 | 3.3:-91194203 | MS.gene40255:CDS |
| TACTCTTTGCCTGAACAGTT+TGG | 0.353606 | 3.3:+91194456 | None:intergenic |
| GTGAAAACCCTTCTATCAAT+TGG | 0.372121 | 3.3:-91194428 | MS.gene40255:CDS |
| ATATTGAACAAGACAGCAAC+TGG | 0.377045 | 3.3:-91193665 | MS.gene40255:CDS |
| CACCACCACCAATTGATAGA+AGG | 0.385809 | 3.3:+91194420 | None:intergenic |
| ACTCTTTGCCTGAACAGTTT+GGG | 0.393044 | 3.3:+91194457 | None:intergenic |
| TAACAACAGTGCCGGCTTGC+CGG | 0.396736 | 3.3:+91194184 | None:intergenic |
| TTCATGGCCTTGATCTTGAC+TGG | 0.404722 | 3.3:-91194295 | MS.gene40255:CDS |
| GCCAGAAATAACAACTTTCA+TGG | 0.408115 | 3.3:-91194311 | MS.gene40255:CDS |
| CTATCATTAAAGGTGGCTAT+TGG | 0.423474 | 3.3:-91194619 | MS.gene40255:CDS |
| AGTAAAGCTACGCAGGGACT+AGG | 0.428936 | 3.3:-91193864 | MS.gene40255:CDS |
| TGTTGCAAACAACTTGGATT+GGG | 0.430200 | 3.3:-91194102 | MS.gene40255:CDS |
| GTAAAGCTACGCAGGGACTA+GGG | 0.431578 | 3.3:-91193863 | MS.gene40255:CDS |
| ATCAATAAATGGGTAGGGTT+AGG | 0.436423 | 3.3:-91193972 | MS.gene40255:CDS |
| TGCTGCGTTTGCAGAAGAAA+TGG | 0.447121 | 3.3:+91194496 | None:intergenic |
| GACGCAGAAAAGGCCAACTT+TGG | 0.449817 | 3.3:-91194257 | MS.gene40255:CDS |
| AACCTTCACCCAAACTGTTC+AGG | 0.452083 | 3.3:-91194465 | MS.gene40255:CDS |
| CTGCACTGAACAAGCCAGTT+GGG | 0.459093 | 3.3:+91194003 | None:intergenic |
| CTCAAAATTACTGCTTCATA+GGG | 0.461311 | 3.3:-91193779 | MS.gene40255:CDS |
| AACTGGGCTCTTTCTGAAGC+AGG | 0.469880 | 3.3:-91193648 | MS.gene40255:intron |
| ATGTTGCAAACAACTTGGAT+TGG | 0.470996 | 3.3:-91194103 | MS.gene40255:CDS |
| ACTGCTTCATAGGGACAGAT+TGG | 0.474272 | 3.3:-91193770 | MS.gene40255:CDS |
| TCTGATTAGTGAACCAAAGT+TGG | 0.474919 | 3.3:+91194244 | None:intergenic |
| ACCAGGTGTGCTAGCCATGT+TGG | 0.477903 | 3.3:+91194370 | None:intergenic |
| TCAAGATGTTGCAAACAACT+TGG | 0.478830 | 3.3:-91194108 | MS.gene40255:CDS |
| CTATCAATTGGTGGTGGTGG+TGG | 0.478983 | 3.3:-91194416 | MS.gene40255:CDS |
| TCCATCCTCTGACGCAGAAA+AGG | 0.482858 | 3.3:-91194267 | MS.gene40255:CDS |
| GCGGGTGGTTGTGTTTGAGT+TGG | 0.482952 | 3.3:+91194038 | None:intergenic |
| GATAACTATCTGAAATGAAA+AGG | 0.483356 | 3.3:+91194060 | None:intergenic |
| TTGGTTCACTAATCAGAGAA+TGG | 0.486996 | 3.3:-91194238 | MS.gene40255:CDS |
| GGCTATTGGTATTCTGATAG+TGG | 0.488891 | 3.3:-91194605 | MS.gene40255:CDS |
| TAGCTTTACTATAAATTCTA+CGG | 0.491563 | 3.3:+91193877 | None:intergenic |
| GCCAACATGGCTAGCACACC+TGG | 0.491851 | 3.3:-91194371 | MS.gene40255:CDS |
| CTATGGTTACAAGTGGAGAT+TGG | 0.494965 | 3.3:-91193913 | MS.gene40255:CDS |
| TCATGGCCTTGATCTTGACT+GGG | 0.503034 | 3.3:-91194294 | MS.gene40255:CDS |
| TGGTGGTGGTGGTCCTACTT+TGG | 0.504618 | 3.3:-91194405 | MS.gene40255:CDS |
| AGATGAAGGTATCAATAAAT+GGG | 0.508361 | 3.3:-91193982 | MS.gene40255:CDS |
| GGCTAGGAGTTCCGGCAAGC+CGG | 0.510084 | 3.3:-91194195 | MS.gene40255:CDS |
| GAAGGTATCAATAAATGGGT+AGG | 0.514625 | 3.3:-91193978 | MS.gene40255:CDS |
| CTTCTATCAATTGGTGGTGG+TGG | 0.515237 | 3.3:-91194419 | MS.gene40255:CDS |
| AGTTGTTATTTCTGGCTACT+CGG | 0.517027 | 3.3:+91194318 | None:intergenic |
| AACAAGTGGGTGAAATAAGA+AGG | 0.524356 | 3.3:+91194560 | None:intergenic |
| TGCCTGAACAGTTTGGGTGA+AGG | 0.526889 | 3.3:+91194463 | None:intergenic |
| TTGCAGCTTCTCGAAACTGG+GGG | 0.527885 | 3.3:-91192614 | MS.gene40255:intron |
| CACTCAAAGTATAGCTAACA+AGG | 0.528080 | 3.3:-91193733 | MS.gene40255:CDS |
| TTGTTTGCAACATCTTGACC+TGG | 0.548598 | 3.3:+91194113 | None:intergenic |
| TTGTTATCTGCTGCAGTAGG+TGG | 0.549211 | 3.3:-91194167 | MS.gene40255:CDS |
| CTGCCGTGACCACAGAGGCT+AGG | 0.554571 | 3.3:-91194211 | MS.gene40255:CDS |
| ACCACCACCAATTGATAGAA+GGG | 0.556168 | 3.3:+91194421 | None:intergenic |
| CTGTTGTTATCTGCTGCAGT+AGG | 0.558516 | 3.3:-91194170 | MS.gene40255:CDS |
| AATTTATAGTAAAGCTACGC+AGG | 0.562146 | 3.3:-91193871 | MS.gene40255:CDS |
| CAGCAAATGCACAGAACAAG+TGG | 0.562193 | 3.3:+91194546 | None:intergenic |
| GATACTCCCAGTCAAGATCA+AGG | 0.567638 | 3.3:+91194288 | None:intergenic |
| CTCCACTTGTAACCATAGTA+GGG | 0.567864 | 3.3:+91193918 | None:intergenic |
| TCTGCACTGAACAAGCCAGT+TGG | 0.568233 | 3.3:+91194002 | None:intergenic |
| AAGGTATCAATAAATGGGTA+GGG | 0.575326 | 3.3:-91193977 | MS.gene40255:CDS |
| GGCTTGTTCAGTGCAGATGA+AGG | 0.580026 | 3.3:-91193996 | MS.gene40255:CDS |
| ACTCCTAGCCTCTGTGGTCA+CGG | 0.583379 | 3.3:+91194208 | None:intergenic |
| TTTAATGATAGCATTTGTAG+AGG | 0.584386 | 3.3:+91194631 | None:intergenic |
| TTTGCAGCTTCTCGAAACTG+GGG | 0.587515 | 3.3:-91192615 | MS.gene40255:intron |
| GCAGCAGATAACAACAGTGC+CGG | 0.602120 | 3.3:+91194176 | None:intergenic |
| AAAACCCTTCTATCAATTGG+TGG | 0.603268 | 3.3:-91194425 | MS.gene40255:CDS |
| ACCCTTCTATCAATTGGTGG+TGG | 0.603753 | 3.3:-91194422 | MS.gene40255:CDS |
| CTGTGTTGGTAGCAGTGTCA+AGG | 0.605213 | 3.3:+91194522 | None:intergenic |
| TTCATAGGGACAGATTGGTA+TGG | 0.606399 | 3.3:-91193765 | MS.gene40255:CDS |
| TACCCTACTATGGTTACAAG+TGG | 0.610838 | 3.3:-91193920 | MS.gene40255:CDS |
| ATTTATAGTAAAGCTACGCA+GGG | 0.611007 | 3.3:-91193870 | MS.gene40255:CDS |
| GATTAATATCAGAAGCTGCA+AGG | 0.615788 | 3.3:+91194582 | None:intergenic |
| TTCGAGAATCATGAGGAGAG+TGG | 0.619692 | 3.3:+91194664 | None:intergenic |
| AGAAGAAATGGTCACTGTGT+TGG | 0.625292 | 3.3:+91194508 | None:intergenic |
| TGCAGCTTCTCGAAACTGGG+GGG | 0.625304 | 3.3:-91192613 | MS.gene40255:intron |
| TAAAGCTACGCAGGGACTAG+GGG | 0.627917 | 3.3:-91193862 | MS.gene40255:CDS |
| ACTAGGGGCAGTGAAGTACA+AGG | 0.628451 | 3.3:-91193847 | MS.gene40255:CDS |
| ACAAATGCTATCATTAAAGG+TGG | 0.644210 | 3.3:-91194626 | MS.gene40255:CDS |
| GCCGGAACTCCTAGCCTCTG+TGG | 0.649064 | 3.3:+91194202 | None:intergenic |
| TGTTTGCAACATCTTGACCT+GGG | 0.652675 | 3.3:+91194114 | None:intergenic |
| ATTGGAGTTCGAGAATCATG+AGG | 0.661701 | 3.3:+91194657 | None:intergenic |
| TATTGAACAAGACAGCAACT+GGG | 0.675280 | 3.3:-91193664 | MS.gene40255:CDS |
| TGAGGAGAGTGGAAACCAAG+AGG | 0.680560 | 3.3:+91194675 | None:intergenic |
| AGCAAATGCACAGAACAAGT+GGG | 0.684809 | 3.3:+91194547 | None:intergenic |
| ACTCCACTAAAATACTACCC+AGG | 0.700599 | 3.3:-91194131 | MS.gene40255:CDS |
| AACATGGCTAGCACACCTGG+TGG | 0.701611 | 3.3:-91194368 | MS.gene40255:CDS |
| GAGAGCTGCCGTGACCACAG+AGG | 0.748821 | 3.3:-91194216 | MS.gene40255:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTGTTTGTTTTAAAAT+GGG | - | chr3.3:91194575-91194594 | MS.gene40255:CDS | 10.0% |
| !!! | TTTTATTGTTTGTTTTAAAA+TGG | - | chr3.3:91194574-91194593 | MS.gene40255:CDS | 10.0% |
| !! | TATATTGTAAAAACAAAACT+AGG | - | chr3.3:91194501-91194520 | MS.gene40255:CDS | 15.0% |
| !!! | ATTGATTAATTTGTTTTTTG+AGG | + | chr3.3:91194445-91194464 | None:intergenic | 15.0% |
| !!! | TTGATTAATTTGTTTTTTGA+GGG | + | chr3.3:91194444-91194463 | None:intergenic | 15.0% |
| !! | AAAACAAACAATAAAATCAG+TGG | + | chr3.3:91194570-91194589 | None:intergenic | 20.0% |
| !! | GAGTGAAATTTATAACTATA+AGG | + | chr3.3:91194359-91194378 | None:intergenic | 20.0% |
| !! | GGAACTAAAAAAAACTAATA+AGG | + | chr3.3:91194338-91194357 | None:intergenic | 20.0% |
| !! | TACAAGGATATAAAAAATAC+TGG | - | chr3.3:91193478-91193497 | MS.gene40255:intron | 20.0% |
| !!! | AAGAATCTATGAATGATTTT+CGG | + | chr3.3:91192967-91192986 | None:intergenic | 20.0% |
| !!! | TAGCTTTACTATAAATTCTA+CGG | + | chr3.3:91193435-91193454 | None:intergenic | 20.0% |
| !!! | TGATTAATTTGTTTTTTGAG+GGG | + | chr3.3:91194443-91194462 | None:intergenic | 20.0% |
| !!! | TTTTCATAAAGATATTAGCA+GGG | + | chr3.3:91193919-91193938 | None:intergenic | 20.0% |
| !!! | TTTTTACTCAAGTAATAAGT+GGG | + | chr3.3:91194543-91194562 | None:intergenic | 20.0% |
| !!! | TTTTTTACTCAAGTAATAAG+TGG | + | chr3.3:91194544-91194563 | None:intergenic | 20.0% |
| ! | AAGGATATAAAAAATACTGG+AGG | - | chr3.3:91193481-91193500 | MS.gene40255:intron | 25.0% |
| ! | AGGATATAAAAAATACTGGA+GGG | - | chr3.3:91193482-91193501 | MS.gene40255:intron | 25.0% |
| ! | CAATGAAACTGTGTTTAATT+AGG | + | chr3.3:91193708-91193727 | None:intergenic | 25.0% |
| ! | CTATAAATTCTACGGTTATT+AGG | + | chr3.3:91193427-91193446 | None:intergenic | 25.0% |
| ! | TAATTCGTGCATATATAACT+AGG | - | chr3.3:91193776-91193795 | MS.gene40255:CDS | 25.0% |
| ! | TACTTATTCAACTAAGCAAA+AGG | + | chr3.3:91194136-91194155 | None:intergenic | 25.0% |
| ! | TCTACAAATGCTATCATTAA+AGG | - | chr3.3:91192680-91192699 | MS.gene40255:intron | 25.0% |
| ! | TTTAATGATAGCATTTGTAG+AGG | + | chr3.3:91192681-91192700 | None:intergenic | 25.0% |
| !! | CTTTTCATAAAGATATTAGC+AGG | + | chr3.3:91193920-91193939 | None:intergenic | 25.0% |
| !! | GATAACTATCTGAAATGAAA+AGG | + | chr3.3:91193252-91193271 | None:intergenic | 25.0% |
| !!! | AGATGAAGGTATCAATAAAT+GGG | - | chr3.3:91193327-91193346 | MS.gene40255:intron | 25.0% |
| AAAAAAAGAGTCACATGGTT+TGG | - | chr3.3:91194619-91194638 | MS.gene40255:CDS | 30.0% | |
| AAGTAATAAGTGGGATGTTT+AGG | + | chr3.3:91194534-91194553 | None:intergenic | 30.0% | |
| AATTTATAGTAAAGCTACGC+AGG | - | chr3.3:91193438-91193457 | MS.gene40255:intron | 30.0% | |
| ACAAATGCTATCATTAAAGG+TGG | - | chr3.3:91192683-91192702 | MS.gene40255:intron | 30.0% | |
| ACTCAAAATTACTGCTTCAT+AGG | - | chr3.3:91193529-91193548 | MS.gene40255:intron | 30.0% | |
| ATGCACCAGAATTATTTACT+TGG | - | chr3.3:91193947-91193966 | MS.gene40255:CDS | 30.0% | |
| ATTTATAGTAAAGCTACGCA+GGG | - | chr3.3:91193439-91193458 | MS.gene40255:intron | 30.0% | |
| CCAAAAAATAAACTTGCACT+TGG | - | chr3.3:91193364-91193383 | MS.gene40255:intron | 30.0% | |
| CTAGGAGTAATTAGTTAAAG+AGG | - | chr3.3:91193794-91193813 | MS.gene40255:CDS | 30.0% | |
| CTCAAAATTACTGCTTCATA+GGG | - | chr3.3:91193530-91193549 | MS.gene40255:intron | 30.0% | |
| GCTTAAATAAGACTCATTCT+TGG | - | chr3.3:91194098-91194117 | MS.gene40255:CDS | 30.0% | |
| GTTATTTATGCCAAGCAAAA+TGG | - | chr3.3:91193598-91193617 | MS.gene40255:intron | 30.0% | |
| TAGCATTTGTAGAGGAAAAT+TGG | + | chr3.3:91192673-91192692 | None:intergenic | 30.0% | |
| TGTGACCAAGTAAATAATTC+TGG | + | chr3.3:91193955-91193974 | None:intergenic | 30.0% | |
| ! | AAACAACACAACACTTTTGT+CGG | + | chr3.3:91194167-91194186 | None:intergenic | 30.0% |
| ! | AAGGTATCAATAAATGGGTA+GGG | - | chr3.3:91193332-91193351 | MS.gene40255:intron | 30.0% |
| ! | GATTGTTTGGATATTTTGCT+TGG | - | chr3.3:91193620-91193639 | MS.gene40255:intron | 30.0% |
| !! | CAGATGAAGGTATCAATAAA+TGG | - | chr3.3:91193326-91193345 | MS.gene40255:intron | 30.0% |
| !! | GCAGTAATTTTGAGTATATG+TGG | + | chr3.3:91193524-91193543 | None:intergenic | 30.0% |
| !!! | AAACCATGTGACTCTTTTTT+TGG | + | chr3.3:91194620-91194639 | None:intergenic | 30.0% |
| !!! | AACCATGTGACTCTTTTTTT+GGG | + | chr3.3:91194619-91194638 | None:intergenic | 30.0% |
| !!! | CCAAGTGCAAGTTTATTTTT+TGG | + | chr3.3:91193367-91193386 | None:intergenic | 30.0% |
| !!! | TTGTTTTAAAATGGGTCACA+CGG | - | chr3.3:91194583-91194602 | MS.gene40255:CDS | 30.0% |
| AAAACCCTTCTATCAATTGG+TGG | - | chr3.3:91192884-91192903 | MS.gene40255:intron | 35.0% | |
| AAAATTGACGCCAAAATGAC+TGG | + | chr3.3:91194277-91194296 | None:intergenic | 35.0% | |
| AACAAGTGGGTGAAATAAGA+AGG | + | chr3.3:91192752-91192771 | None:intergenic | 35.0% | |
| ATATTGAACAAGACAGCAAC+TGG | - | chr3.3:91193644-91193663 | MS.gene40255:intron | 35.0% | |
| ATCAATAAATGGGTAGGGTT+AGG | - | chr3.3:91193337-91193356 | MS.gene40255:intron | 35.0% | |
| ATGTTGCAAACAACTTGGAT+TGG | - | chr3.3:91193206-91193225 | MS.gene40255:intron | 35.0% | |
| CACTCAAAGTATAGCTAACA+AGG | - | chr3.3:91193576-91193595 | MS.gene40255:intron | 35.0% | |
| CTATCATTAAAGGTGGCTAT+TGG | - | chr3.3:91192690-91192709 | MS.gene40255:intron | 35.0% | |
| CTTAACCGACACTATATCTA+GGG | - | chr3.3:91194227-91194246 | MS.gene40255:CDS | 35.0% | |
| GATTAATATCAGAAGCTGCA+AGG | + | chr3.3:91192730-91192749 | None:intergenic | 35.0% | |
| GCCAGAAATAACAACTTTCA+TGG | - | chr3.3:91192998-91193017 | MS.gene40255:intron | 35.0% | |
| GTGAAAACCCTTCTATCAAT+TGG | - | chr3.3:91192881-91192900 | MS.gene40255:intron | 35.0% | |
| TAGAGTGACTCATTGTTAGT+CGG | + | chr3.3:91194653-91194672 | None:intergenic | 35.0% | |
| TATTGAACAAGACAGCAACT+GGG | - | chr3.3:91193645-91193664 | MS.gene40255:intron | 35.0% | |
| TCAAGATGTTGCAAACAACT+TGG | - | chr3.3:91193201-91193220 | MS.gene40255:intron | 35.0% | |
| TCTGATTAGTGAACCAAAGT+TGG | + | chr3.3:91193068-91193087 | None:intergenic | 35.0% | |
| TGTTGCAAACAACTTGGATT+GGG | - | chr3.3:91193207-91193226 | MS.gene40255:intron | 35.0% | |
| TTGGTTCACTAATCAGAGAA+TGG | - | chr3.3:91193071-91193090 | MS.gene40255:intron | 35.0% | |
| ! | TCCAAACAATCCATTTTGCT+TGG | + | chr3.3:91193611-91193630 | None:intergenic | 35.0% |
| ! | TGCAAGTAAACCAGTCATTT+TGG | - | chr3.3:91194264-91194283 | MS.gene40255:CDS | 35.0% |
| !! | AAGAGGCTTGCTAATCTTTA+AGG | - | chr3.3:91193811-91193830 | MS.gene40255:CDS | 35.0% |
| !! | AGTTGTTATTTCTGGCTACT+CGG | + | chr3.3:91192994-91193013 | None:intergenic | 35.0% |
| !! | CTAGATATAGTGTCGGTTAA+GGG | + | chr3.3:91194228-91194247 | None:intergenic | 35.0% |
| !! | GAAGGTATCAATAAATGGGT+AGG | - | chr3.3:91193331-91193350 | MS.gene40255:intron | 35.0% |
| !! | GCATATTTTTGTGCCAAAGT+AGG | + | chr3.3:91192920-91192939 | None:intergenic | 35.0% |
| !! | GCCATGAAAGTTGTTATTTC+TGG | + | chr3.3:91193002-91193021 | None:intergenic | 35.0% |
| !! | TAGATATAGTGTCGGTTAAG+GGG | + | chr3.3:91194227-91194246 | None:intergenic | 35.0% |
| ACCACCACCAATTGATAGAA+GGG | + | chr3.3:91192891-91192910 | None:intergenic | 40.0% | |
| ACTCCACTAAAATACTACCC+AGG | - | chr3.3:91193178-91193197 | MS.gene40255:intron | 40.0% | |
| ACTCTTTGCCTGAACAGTTT+GGG | + | chr3.3:91192855-91192874 | None:intergenic | 40.0% | |
| AGAAGAAATGGTCACTGTGT+TGG | + | chr3.3:91192804-91192823 | None:intergenic | 40.0% | |
| AGAGTGACTCATTGTTAGTC+GGG | + | chr3.3:91194652-91194671 | None:intergenic | 40.0% | |
| AGCAAATGCACAGAACAAGT+GGG | + | chr3.3:91192765-91192784 | None:intergenic | 40.0% | |
| ATTGGAGTTCGAGAATCATG+AGG | + | chr3.3:91192655-91192674 | None:intergenic | 40.0% | |
| CACCCAAAAAAAGAGTCACA+TGG | - | chr3.3:91194614-91194633 | MS.gene40255:CDS | 40.0% | |
| CCTTAACCGACACTATATCT+AGG | - | chr3.3:91194226-91194245 | MS.gene40255:CDS | 40.0% | |
| CTATGGTTACAAGTGGAGAT+TGG | - | chr3.3:91193396-91193415 | MS.gene40255:intron | 40.0% | |
| CTCCACTTGTAACCATAGTA+GGG | + | chr3.3:91193394-91193413 | None:intergenic | 40.0% | |
| GGCACAAAAATATGCCAACA+TGG | - | chr3.3:91192925-91192944 | MS.gene40255:intron | 40.0% | |
| GGCTATTGGTATTCTGATAG+TGG | - | chr3.3:91192704-91192723 | MS.gene40255:intron | 40.0% | |
| TACCCTACTATGGTTACAAG+TGG | - | chr3.3:91193389-91193408 | MS.gene40255:intron | 40.0% | |
| TACTCTTTGCCTGAACAGTT+TGG | + | chr3.3:91192856-91192875 | None:intergenic | 40.0% | |
| TCTCCACTTGTAACCATAGT+AGG | + | chr3.3:91193395-91193414 | None:intergenic | 40.0% | |
| TGTTTGCAACATCTTGACCT+GGG | + | chr3.3:91193198-91193217 | None:intergenic | 40.0% | |
| TTCATAGGGACAGATTGGTA+TGG | - | chr3.3:91193544-91193563 | MS.gene40255:intron | 40.0% | |
| TTGTTTGCAACATCTTGACC+TGG | + | chr3.3:91193199-91193218 | None:intergenic | 40.0% | |
| ! | CAAGAGGAACGAATGCTTTT+TGG | + | chr3.3:91192621-91192640 | None:intergenic | 40.0% |
| ! | TTTTGCAGCTTCTCGAAACT+GGG | - | chr3.3:91194693-91194712 | MS.gene40255:CDS | 40.0% |
| ! | TTTTTGCAGCTTCTCGAAAC+TGG | - | chr3.3:91194692-91194711 | MS.gene40255:CDS | 40.0% |
| !! | AAGCCAGTTGGGTTTTTCAA+AGG | + | chr3.3:91193298-91193317 | None:intergenic | 40.0% |
| !! | AGTTGGGTTTTTCAAAGGAG+CGG | + | chr3.3:91193293-91193312 | None:intergenic | 40.0% |
| !! | CAAAAAGCATTCGTTCCTCT+TGG | - | chr3.3:91192619-91192638 | MS.gene40255:intron | 40.0% |
| !! | CCTAGATATAGTGTCGGTTA+AGG | + | chr3.3:91194229-91194248 | None:intergenic | 40.0% |
| !! | GCCAAGCAAAATGGATTGTT+TGG | - | chr3.3:91193607-91193626 | MS.gene40255:intron | 40.0% |
| !! | TGACCTGGGTAGTATTTTAG+TGG | + | chr3.3:91193184-91193203 | None:intergenic | 40.0% |
| !!! | CATGTGACTCTTTTTTTGGG+TGG | + | chr3.3:91194616-91194635 | None:intergenic | 40.0% |
| AACCTTCACCCAAACTGTTC+AGG | - | chr3.3:91192844-91192863 | MS.gene40255:intron | 45.0% | |
| ACCCTTCTATCAATTGGTGG+TGG | - | chr3.3:91192887-91192906 | MS.gene40255:intron | 45.0% | |
| ACTGCTTCATAGGGACAGAT+TGG | - | chr3.3:91193539-91193558 | MS.gene40255:intron | 45.0% | |
| CACCACCACCAATTGATAGA+AGG | + | chr3.3:91192892-91192911 | None:intergenic | 45.0% | |
| CAGCAAATGCACAGAACAAG+TGG | + | chr3.3:91192766-91192785 | None:intergenic | 45.0% | |
| CTGTTGTTATCTGCTGCAGT+AGG | - | chr3.3:91193139-91193158 | MS.gene40255:intron | 45.0% | |
| GAGTGACTCATTGTTAGTCG+GGG | + | chr3.3:91194651-91194670 | None:intergenic | 45.0% | |
| GATACTCCCAGTCAAGATCA+AGG | + | chr3.3:91193024-91193043 | None:intergenic | 45.0% | |
| TGCTGCGTTTGCAGAAGAAA+TGG | + | chr3.3:91192816-91192835 | None:intergenic | 45.0% | |
| TTCGAGAATCATGAGGAGAG+TGG | + | chr3.3:91192648-91192667 | None:intergenic | 45.0% | |
| TTGTTATCTGCTGCAGTAGG+TGG | - | chr3.3:91193142-91193161 | MS.gene40255:intron | 45.0% | |
| TTTGCAGCTTCTCGAAACTG+GGG | - | chr3.3:91194694-91194713 | MS.gene40255:CDS | 45.0% | |
| ! | ATGAATGATTTTCGGCCACC+AGG | + | chr3.3:91192959-91192978 | None:intergenic | 45.0% |
| ! | CAACACAACACTTTTGTCGG+TGG | + | chr3.3:91194164-91194183 | None:intergenic | 45.0% |
| ! | GCTCCTTTGAAAAACCCAAC+TGG | - | chr3.3:91193292-91193311 | MS.gene40255:intron | 45.0% |
| ! | TCATGGCCTTGATCTTGACT+GGG | - | chr3.3:91193015-91193034 | MS.gene40255:intron | 45.0% |
| ! | TTCATGGCCTTGATCTTGAC+TGG | - | chr3.3:91193014-91193033 | MS.gene40255:intron | 45.0% |
| !! | CTTCTATCAATTGGTGGTGG+TGG | - | chr3.3:91192890-91192909 | MS.gene40255:intron | 45.0% |
| !! | GTTGGGTTTTTCAAAGGAGC+GGG | + | chr3.3:91193292-91193311 | None:intergenic | 45.0% |
| ACTAGGGGCAGTGAAGTACA+AGG | - | chr3.3:91193462-91193481 | MS.gene40255:intron | 50.0% | |
| AGTAAAGCTACGCAGGGACT+AGG | - | chr3.3:91193445-91193464 | MS.gene40255:intron | 50.0% | |
| CTGCACTGAACAAGCCAGTT+GGG | + | chr3.3:91193309-91193328 | None:intergenic | 50.0% | |
| GACGCAGAAAAGGCCAACTT+TGG | - | chr3.3:91193052-91193071 | MS.gene40255:intron | 50.0% | |
| GACTCATTGTTAGTCGGGGA+TGG | + | chr3.3:91194647-91194666 | None:intergenic | 50.0% | |
| GAGATGAGAGATGAGTTGCC+TGG | - | chr3.3:91194198-91194217 | MS.gene40255:CDS | 50.0% | |
| GCACTTGGCTTACCCTACTA+TGG | - | chr3.3:91193379-91193398 | MS.gene40255:intron | 50.0% | |
| GCAGCAGATAACAACAGTGC+CGG | + | chr3.3:91193136-91193155 | None:intergenic | 50.0% | |
| GCCAGCCCTAGATATAGTGT+CGG | + | chr3.3:91194235-91194254 | None:intergenic | 50.0% | |
| GTAAAGCTACGCAGGGACTA+GGG | - | chr3.3:91193446-91193465 | MS.gene40255:intron | 50.0% | |
| TAAAGCTACGCAGGGACTAG+GGG | - | chr3.3:91193447-91193466 | MS.gene40255:intron | 50.0% | |
| TCCATCCTCTGACGCAGAAA+AGG | - | chr3.3:91193042-91193061 | MS.gene40255:intron | 50.0% | |
| TCTGCACTGAACAAGCCAGT+TGG | + | chr3.3:91193310-91193329 | None:intergenic | 50.0% | |
| TGAGGAGAGTGGAAACCAAG+AGG | + | chr3.3:91192637-91192656 | None:intergenic | 50.0% | |
| TGCCTGAACAGTTTGGGTGA+AGG | + | chr3.3:91192849-91192868 | None:intergenic | 50.0% | |
| TTGCAGCTTCTCGAAACTGG+GGG | - | chr3.3:91194695-91194714 | MS.gene40255:CDS | 50.0% | |
| ! | ACCGACACTATATCTAGGGC+TGG | - | chr3.3:91194231-91194250 | MS.gene40255:CDS | 50.0% |
| ! | ATATCTAGGGCTGGCACATG+AGG | - | chr3.3:91194240-91194259 | MS.gene40255:CDS | 50.0% |
| ! | GGCTTGTTCAGTGCAGATGA+AGG | - | chr3.3:91193313-91193332 | MS.gene40255:intron | 50.0% |
| ! | TCTGAAGCAGGTCGGTACAT+AGG | - | chr3.3:91193673-91193692 | MS.gene40255:CDS | 50.0% |
| !! | AACTGGGCTCTTTCTGAAGC+AGG | - | chr3.3:91193661-91193680 | MS.gene40255:CDS | 50.0% |
| !! | CTATCAATTGGTGGTGGTGG+TGG | - | chr3.3:91192893-91192912 | MS.gene40255:intron | 50.0% |
| !! | CTGTGTTGGTAGCAGTGTCA+AGG | + | chr3.3:91192790-91192809 | None:intergenic | 50.0% |
| AACATGGCTAGCACACCTGG+TGG | - | chr3.3:91192941-91192960 | MS.gene40255:intron | 55.0% | |
| ACCACAGAGGCTAGGAGTTC+CGG | - | chr3.3:91193106-91193125 | MS.gene40255:intron | 55.0% | |
| ACCAGGTGTGCTAGCCATGT+TGG | + | chr3.3:91192942-91192961 | None:intergenic | 55.0% | |
| ACTCCTAGCCTCTGTGGTCA+CGG | + | chr3.3:91193104-91193123 | None:intergenic | 55.0% | |
| GCGGGTGGTTGTGTTTGAGT+TGG | + | chr3.3:91193274-91193293 | None:intergenic | 55.0% | |
| TGCAGCTTCTCGAAACTGGG+GGG | - | chr3.3:91194696-91194715 | MS.gene40255:CDS | 55.0% | |
| ! | GCCTTTTCTGCGTCAGAGGA+TGG | + | chr3.3:91193046-91193065 | None:intergenic | 55.0% |
| !! | GGGCTCTTTCTGAAGCAGGT+CGG | - | chr3.3:91193665-91193684 | MS.gene40255:CDS | 55.0% |
| !! | GGGTTTTTCAAAGGAGCGGG+TGG | + | chr3.3:91193289-91193308 | None:intergenic | 55.0% |
| !! | TAACAACAGTGCCGGCTTGC+CGG | + | chr3.3:91193128-91193147 | None:intergenic | 55.0% |
| !! | TGGTGGTGGTGGTCCTACTT+TGG | - | chr3.3:91192904-91192923 | MS.gene40255:intron | 55.0% |
| !!! | GTTGGCCTTTTCTGCGTCAG+AGG | + | chr3.3:91193050-91193069 | None:intergenic | 55.0% |
| GCCAACATGGCTAGCACACC+TGG | - | chr3.3:91192938-91192957 | MS.gene40255:intron | 60.0% | |
| CTGCCGTGACCACAGAGGCT+AGG | - | chr3.3:91193098-91193117 | MS.gene40255:intron | 65.0% | |
| GAGAGCTGCCGTGACCACAG+AGG | - | chr3.3:91193093-91193112 | MS.gene40255:intron | 65.0% | |
| GCCGGAACTCCTAGCCTCTG+TGG | + | chr3.3:91193110-91193129 | None:intergenic | 65.0% | |
| GGCTAGGAGTTCCGGCAAGC+CGG | - | chr3.3:91193114-91193133 | MS.gene40255:intron | 65.0% | |
| !! | GTGTCGGTTAAGGGGCAGCC+AGG | + | chr3.3:91194219-91194238 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 91192608 | 91194723 | 91192608 | ID=MS.gene40255 |
| chr3.3 | mRNA | 91192608 | 91194723 | 91192608 | ID=MS.gene40255.t1;Parent=MS.gene40255 |
| chr3.3 | exon | 91193649 | 91194723 | 91193649 | ID=MS.gene40255.t1.exon1;Parent=MS.gene40255.t1 |
| chr3.3 | CDS | 91193649 | 91194723 | 91193649 | ID=cds.MS.gene40255.t1;Parent=MS.gene40255.t1 |
| chr3.3 | exon | 91192608 | 91192630 | 91192608 | ID=MS.gene40255.t1.exon2;Parent=MS.gene40255.t1 |
| chr3.3 | CDS | 91192608 | 91192630 | 91192608 | ID=cds.MS.gene40255.t1;Parent=MS.gene40255.t1 |
| Gene Sequence |
| Protein sequence |
