Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48549.t1 | KEH36081.1 | 90.1 | 363 | 31 | 2 | 1 | 361 | 1 | 360 | 1.00E-182 | 649.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48549.t1 | O81862 | 48.2 | 359 | 171 | 6 | 11 | 360 | 9 | 361 | 9.2e-87 | 322.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48549.t1 | A0A072V330 | 90.1 | 363 | 31 | 2 | 1 | 361 | 1 | 360 | 7.5e-183 | 649.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052011 | MS.gene48549 | -0.80545 | 1.33E-49 | -1.69E-46 |
| MS.gene052589 | MS.gene48549 | 0.804687 | 1.92E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene48549 | MS.gene40707 | PPI |
| MS.gene48549 | MS.gene041428 | PPI |
| MS.gene055584 | MS.gene48549 | PPI |
| MS.gene48549 | MS.gene43244 | PPI |
| MS.gene014609 | MS.gene48549 | PPI |
| MS.gene40255 | MS.gene48549 | PPI |
| MS.gene48549 | MS.gene021954 | PPI |
| MS.gene44679 | MS.gene48549 | PPI |
| MS.gene48549 | MS.gene72023 | PPI |
| MS.gene40257 | MS.gene48549 | PPI |
| MS.gene72022 | MS.gene48549 | PPI |
| MS.gene44682 | MS.gene48549 | PPI |
| MS.gene014611 | MS.gene48549 | PPI |
| MS.gene014610 | MS.gene48549 | PPI |
| MS.gene53841 | MS.gene48549 | PPI |
| MS.gene48549 | MS.gene014610 | PPI |
| MS.gene48549 | MS.gene40705 | PPI |
| MS.gene40706 | MS.gene48549 | PPI |
| MS.gene036626 | MS.gene48549 | PPI |
| MS.gene72024 | MS.gene48549 | PPI |
| MS.gene40256 | MS.gene48549 | PPI |
| MS.gene58750 | MS.gene48549 | PPI |
| MS.gene021944 | MS.gene48549 | PPI |
| MS.gene48549 | MS.gene57747 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48549.t1 | MTR_3g110280 | 90.582 | 361 | 33 | 1 | 1 | 361 | 1 | 360 | 0.0 | 655 |
| MS.gene48549.t1 | MTR_3g110320 | 83.380 | 361 | 58 | 1 | 1 | 361 | 1 | 359 | 0.0 | 619 |
| MS.gene48549.t1 | MTR_3g110320 | 83.333 | 360 | 58 | 1 | 1 | 360 | 1 | 358 | 0.0 | 617 |
| MS.gene48549.t1 | MTR_4g116920 | 76.164 | 365 | 69 | 3 | 1 | 364 | 1 | 348 | 0.0 | 547 |
| MS.gene48549.t1 | MTR_4g117040 | 36.559 | 372 | 210 | 10 | 9 | 364 | 6 | 367 | 3.67e-67 | 227 |
| MS.gene48549.t1 | MTR_1g013150 | 33.903 | 351 | 213 | 5 | 22 | 359 | 32 | 376 | 8.92e-64 | 209 |
| MS.gene48549.t1 | MTR_4g117020 | 32.598 | 408 | 244 | 11 | 3 | 392 | 2 | 396 | 7.24e-63 | 215 |
| MS.gene48549.t1 | MTR_4g117030 | 34.060 | 367 | 217 | 9 | 41 | 392 | 1 | 357 | 3.49e-60 | 207 |
| MS.gene48549.t1 | MTR_4g117000 | 34.018 | 341 | 207 | 7 | 30 | 358 | 35 | 369 | 1.96e-57 | 192 |
| MS.gene48549.t1 | MTR_4g116990 | 35.072 | 345 | 202 | 7 | 30 | 358 | 37 | 375 | 9.18e-54 | 183 |
| MS.gene48549.t1 | MTR_4g117800 | 34.463 | 177 | 112 | 1 | 6 | 182 | 4 | 176 | 2.96e-25 | 107 |
| MS.gene48549.t1 | MTR_7g096730 | 37.500 | 88 | 47 | 3 | 289 | 368 | 3 | 90 | 6.19e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48549.t1 | AT4G19810 | 49.444 | 360 | 167 | 6 | 11 | 361 | 9 | 362 | 1.28e-114 | 339 |
| MS.gene48549.t1 | AT4G19810 | 49.444 | 360 | 167 | 6 | 11 | 361 | 9 | 362 | 1.28e-114 | 339 |
| MS.gene48549.t1 | AT4G19820 | 46.537 | 361 | 178 | 6 | 10 | 361 | 6 | 360 | 2.49e-101 | 305 |
| MS.gene48549.t1 | AT4G19800 | 43.017 | 358 | 187 | 6 | 25 | 374 | 2 | 350 | 1.00e-96 | 294 |
| MS.gene48549.t1 | AT4G19750 | 44.231 | 364 | 175 | 10 | 17 | 363 | 1 | 353 | 5.63e-94 | 286 |
| MS.gene48549.t1 | AT4G19760 | 43.902 | 369 | 175 | 10 | 17 | 361 | 1 | 361 | 2.24e-91 | 280 |
| MS.gene48549.t1 | AT4G19720 | 41.714 | 350 | 177 | 7 | 30 | 361 | 6 | 346 | 9.05e-83 | 257 |
| MS.gene48549.t1 | AT4G19730 | 41.888 | 339 | 168 | 9 | 17 | 333 | 1 | 332 | 9.06e-74 | 233 |
| MS.gene48549.t1 | AT4G19770 | 40.226 | 266 | 146 | 5 | 115 | 372 | 1 | 261 | 1.00e-57 | 189 |
| MS.gene48549.t1 | AT4G19740 | 35.602 | 191 | 109 | 5 | 138 | 318 | 24 | 210 | 7.96e-29 | 112 |
Find 83 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATGGAAGTTGTTATTTC+TGG | 0.149476 | 7.2:+82481607 | None:intergenic |
| ATACCAATAACCACCTTTAA+TGG | 0.242528 | 7.2:+82481919 | None:intergenic |
| GTTTGAGTTGGATAACTATC+TGG | 0.256686 | 7.2:+82481347 | None:intergenic |
| TCTACAAACGCTGCCATTAA+AGG | 0.257757 | 7.2:-82481932 | MS.gene48549:CDS |
| GCACTTGGTTTACCCTTCTA+TGG | 0.267748 | 7.2:-82481227 | MS.gene48549:CDS |
| GCCAAGCAAAATGGATTGTT+TGG | 0.270489 | 7.2:-82480999 | MS.gene48549:CDS |
| CAGCGTTTGTAGAGGAAAAT+TGG | 0.280388 | 7.2:+82481942 | None:intergenic |
| CTGCCATTAAAGGTGGTTAT+TGG | 0.284781 | 7.2:-82481922 | MS.gene48549:CDS |
| ACTCCATTTGTAACCATAGA+AGG | 0.300520 | 7.2:+82481214 | None:intergenic |
| CAGATGAAGGTCTCACAAAA+TGG | 0.306351 | 7.2:-82481280 | MS.gene48549:CDS |
| GCAGCAGATAACAACATTTC+CGG | 0.307874 | 7.2:+82481473 | None:intergenic |
| GTTGCTTATGCCAAGCAAAA+TGG | 0.325981 | 7.2:-82481008 | MS.gene48549:CDS |
| GACCTTCATCTGCACTAAAT+TGG | 0.342441 | 7.2:+82481291 | None:intergenic |
| GCCGCAGAGTCTAGGAGTTC+CGG | 0.370169 | 7.2:-82481500 | MS.gene48549:CDS |
| CGAATTACTCTTTAACTGAA+TGG | 0.377363 | 7.2:+82481754 | None:intergenic |
| TAACAACATTTCCGGCTTGC+CGG | 0.385110 | 7.2:+82481481 | None:intergenic |
| CTATGGTTACAAATGGAGTT+TGG | 0.386230 | 7.2:-82481210 | MS.gene48549:CDS |
| CTGCACTAAATTGGCCAGTT+GGG | 0.395696 | 7.2:+82481300 | None:intergenic |
| CTCAAAATTACTGCTTCAAA+GGG | 0.414658 | 7.2:-82481076 | MS.gene48549:CDS |
| GACGTTGAAATGACCAACTT+TGG | 0.415190 | 7.2:-82481554 | MS.gene48549:CDS |
| CTGCTGTGGCCGCAGAGTCT+AGG | 0.417042 | 7.2:-82481508 | MS.gene48549:CDS |
| TGTGCTTTAGTAGAACGTTC+AGG | 0.418141 | 7.2:+82481698 | None:intergenic |
| AGTAAAGCTACGGAGGGACT+AGG | 0.430192 | 7.2:-82481161 | MS.gene48549:CDS |
| TGTTGCAAACAACTTGGATT+GGG | 0.430200 | 7.2:-82481399 | MS.gene48549:CDS |
| TACCCTTCTATGGTTACAAA+TGG | 0.432906 | 7.2:-82481217 | MS.gene48549:CDS |
| AAATTGGACAAGACAACAAT+TGG | 0.443469 | 7.2:-82480962 | MS.gene48549:CDS |
| AAACAAGTGGGTGAAATAAG+AGG | 0.449767 | 7.2:+82481862 | None:intergenic |
| ACTCAAAATTACTGCTTCAA+AGG | 0.460609 | 7.2:-82481077 | MS.gene48549:CDS |
| CTTGGTTGGTATTAGAATCA+AGG | 0.461412 | 7.2:+82481825 | None:intergenic |
| TCCATGGCCTTGATCTTGAC+TGG | 0.462821 | 7.2:-82481592 | MS.gene48549:CDS |
| ACTGCTTCAAAGGGACAGAT+TGG | 0.463515 | 7.2:-82481067 | MS.gene48549:CDS |
| CTCACAAAATGGGTAGGGTT+AGG | 0.464284 | 7.2:-82481269 | MS.gene48549:CDS |
| GTAAAGCTACGGAGGGACTA+GGG | 0.465001 | 7.2:-82481160 | MS.gene48549:CDS |
| AGCTGCGTTTGTAGAAGAAA+TGG | 0.467412 | 7.2:+82481799 | None:intergenic |
| ATGTTGCAAACAACTTGGAT+TGG | 0.470996 | 7.2:-82481400 | MS.gene48549:CDS |
| TTTGAGTTGGATAACTATCT+GGG | 0.472310 | 7.2:+82481348 | None:intergenic |
| TCAAGATGTTGCAAACAACT+TGG | 0.478830 | 7.2:-82481405 | MS.gene48549:CDS |
| GCGGGTGGTTGTGTTTGAGT+TGG | 0.482952 | 7.2:+82481335 | None:intergenic |
| TCTGCACTAAATTGGCCAGT+TGG | 0.504088 | 7.2:+82481299 | None:intergenic |
| GTCATTTCAACGTCTGAGGA+TGG | 0.506694 | 7.2:+82481563 | None:intergenic |
| TGACCTGGGTAGTACTTCAA+TGG | 0.515075 | 7.2:+82481425 | None:intergenic |
| TAACTGAATGGTTTCAGTGA+AGG | 0.515519 | 7.2:+82481766 | None:intergenic |
| TTGGAGAATCATGAGGAGAG+TGG | 0.515988 | 7.2:+82481967 | None:intergenic |
| AGATGAAGGTCTCACAAAAT+GGG | 0.516707 | 7.2:-82481279 | MS.gene48549:CDS |
| GTCTAGGAGTTCCGGCAAGC+CGG | 0.525983 | 7.2:-82481492 | MS.gene48549:CDS |
| AATTGGACTCTTTCTCAAGC+AGG | 0.528807 | 7.2:-82480945 | MS.gene48549:CDS |
| TTGTAGAGGAAAATTGGAGT+TGG | 0.530932 | 7.2:+82481948 | None:intergenic |
| TGTAATGAGTAAACCAAAGT+TGG | 0.531161 | 7.2:+82481541 | None:intergenic |
| TTGCTTGGCATAAGCAACCT+TGG | 0.538135 | 7.2:+82481013 | None:intergenic |
| TTGTTTGCAACATCTTGACC+TGG | 0.548598 | 7.2:+82481410 | None:intergenic |
| GCCAGTCAAGATCAAGGCCA+TGG | 0.551440 | 7.2:+82481591 | None:intergenic |
| AGTTGTTATTTCTGGCTAGT+CGG | 0.552779 | 7.2:+82481615 | None:intergenic |
| TTGTTATCTGCTGCAGTGGG+TGG | 0.559981 | 7.2:-82481464 | MS.gene48549:CDS |
| ACTGGCTTGGCTAGACATGT+TGG | 0.568429 | 7.2:+82481667 | None:intergenic |
| TACAGCGTGGAGAGCTGCTG+TGG | 0.570204 | 7.2:-82481522 | MS.gene48549:CDS |
| GGCCAATTTAGTGCAGATGA+AGG | 0.571051 | 7.2:-82481293 | MS.gene48549:CDS |
| GAAGGTCTCACAAAATGGGT+AGG | 0.571961 | 7.2:-82481275 | MS.gene48549:CDS |
| AACAAGTGGGTGAAATAAGA+GGG | 0.575691 | 7.2:+82481863 | None:intergenic |
| CTGCAAATGCACAAAACAAG+TGG | 0.579073 | 7.2:+82481849 | None:intergenic |
| CTCCATTTGTAACCATAGAA+GGG | 0.586080 | 7.2:+82481215 | None:intergenic |
| AAGGTCTCACAAAATGGGTA+GGG | 0.587493 | 7.2:-82481274 | MS.gene48549:CDS |
| CACTCAGAGTATATCTGCCA+AGG | 0.587655 | 7.2:-82481030 | MS.gene48549:CDS |
| GATACAGCCAGTCAAGATCA+AGG | 0.589592 | 7.2:+82481585 | None:intergenic |
| GTTGGTCATTTCAACGTCTG+AGG | 0.592628 | 7.2:+82481559 | None:intergenic |
| AGAAGAAATGGTGACTTGGT+TGG | 0.600417 | 7.2:+82481811 | None:intergenic |
| AATGTTGTTATCTGCTGCAG+TGG | 0.603089 | 7.2:-82481468 | MS.gene48549:CDS |
| TGAGGAGAGTGGAAATCAAG+AGG | 0.606133 | 7.2:+82481978 | None:intergenic |
| TTCAAAGGGACAGATTGGTA+TGG | 0.606399 | 7.2:-82481062 | MS.gene48549:CDS |
| TTTAATGGCAGCGTTTGTAG+AGG | 0.608544 | 7.2:+82481934 | None:intergenic |
| GCCAGAAATAACAACTTCCA+TGG | 0.628402 | 7.2:-82481608 | MS.gene48549:CDS |
| ACTAGGGGCAGTGAAGTACA+AGG | 0.628451 | 7.2:-82481144 | MS.gene48549:CDS |
| TAAAGCTACGGAGGGACTAG+GGG | 0.632494 | 7.2:-82481159 | MS.gene48549:CDS |
| ATTGGAGTTGGAGAATCATG+AGG | 0.636575 | 7.2:+82481960 | None:intergenic |
| ATGTTGTTATCTGCTGCAGT+GGG | 0.637823 | 7.2:-82481467 | MS.gene48549:CDS |
| TTGTAGAAGAAATGGTGACT+TGG | 0.641849 | 7.2:+82481807 | None:intergenic |
| TGCAAATGCACAAAACAAGT+GGG | 0.643130 | 7.2:+82481850 | None:intergenic |
| GATCAATCTCAGAAACTGCA+AGG | 0.648716 | 7.2:+82481885 | None:intergenic |
| TGTTTGCAACATCTTGACCT+GGG | 0.652675 | 7.2:+82481411 | None:intergenic |
| ACAAACGCTGCCATTAAAGG+TGG | 0.664680 | 7.2:-82481929 | MS.gene48549:CDS |
| ACTCCATTGAAGTACTACCC+AGG | 0.697331 | 7.2:-82481428 | MS.gene48549:CDS |
| GCCGGAACTCCTAGACTCTG+CGG | 0.700936 | 7.2:+82481499 | None:intergenic |
| TTGAGTTGGATAACTATCTG+GGG | 0.706447 | 7.2:+82481349 | None:intergenic |
| TTGGTTTACTCATTACAGCG+TGG | 0.741266 | 7.2:-82481535 | MS.gene48549:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAGGATATAAAAAATACT+GGG | - | chr7.2:82481722-82481741 | MS.gene48549:CDS | 20.0% |
| !! | TACAAGGATATAAAAAATAC+TGG | - | chr7.2:82481721-82481740 | MS.gene48549:CDS | 20.0% |
| !!! | TAGAATTTTTAGTAAAGCTA+CGG | - | chr7.2:82481678-82481697 | MS.gene48549:CDS | 20.0% |
| !!! | TAGCTTTACTAAAAATTCTA+CGG | + | chr7.2:82481678-82481697 | None:intergenic | 20.0% |
| ! | AAGGATATAAAAAATACTGG+GGG | - | chr7.2:82481724-82481743 | MS.gene48549:CDS | 25.0% |
| ! | CAAGGATATAAAAAATACTG+GGG | - | chr7.2:82481723-82481742 | MS.gene48549:CDS | 25.0% |
| ! | CTAAAAATTCTACGGTTATT+AGG | + | chr7.2:82481670-82481689 | None:intergenic | 25.0% |
| !! | AAGAATCTATGAACGATTTT+CGG | + | chr7.2:82481210-82481229 | None:intergenic | 25.0% |
| !! | TTGAAAACGCTTTTATCAAT+TGG | - | chr7.2:82481118-82481137 | MS.gene48549:CDS | 25.0% |
| !!! | CAACAAAGAAGTGTTTTATT+AGG | + | chr7.2:82481946-82481965 | None:intergenic | 25.0% |
| AAATTGGACAAGACAACAAT+TGG | - | chr7.2:82481887-82481906 | MS.gene48549:CDS | 30.0% | |
| AAGCTCCTCTTGAAAAAAAA+AGG | + | chr7.2:82481971-82481990 | None:intergenic | 30.0% | |
| ACTCAAAATTACTGCTTCAA+AGG | - | chr7.2:82481772-82481791 | MS.gene48549:CDS | 30.0% | |
| AGGATATAAAAAATACTGGG+GGG | - | chr7.2:82481725-82481744 | MS.gene48549:CDS | 30.0% | |
| ATACCAATAACCACCTTTAA+TGG | + | chr7.2:82480933-82480952 | None:intergenic | 30.0% | |
| CGAATTACTCTTTAACTGAA+TGG | + | chr7.2:82481098-82481117 | None:intergenic | 30.0% | |
| CTCAAAATTACTGCTTCAAA+GGG | - | chr7.2:82481773-82481792 | MS.gene48549:CDS | 30.0% | |
| TGTAATGAGTAAACCAAAGT+TGG | + | chr7.2:82481311-82481330 | None:intergenic | 30.0% | |
| ! | AAAACGCTTTTATCAATTGG+TGG | - | chr7.2:82481121-82481140 | MS.gene48549:CDS | 30.0% |
| ! | GATTGTTTGGATATTTTGCT+TGG | - | chr7.2:82481863-82481882 | MS.gene48549:CDS | 30.0% |
| !! | GCAGTAATTTTGAGTATATG+TGG | + | chr7.2:82481767-82481786 | None:intergenic | 30.0% |
| !! | TTTGAGTTGGATAACTATCT+GGG | + | chr7.2:82481504-82481523 | None:intergenic | 30.0% |
| !!! | AATTTTTAGTAAAGCTACGG+AGG | - | chr7.2:82481681-82481700 | MS.gene48549:CDS | 30.0% |
| !!! | ATTTTTAGTAAAGCTACGGA+GGG | - | chr7.2:82481682-82481701 | MS.gene48549:CDS | 30.0% |
| !!! | TTGCACCTTTTTTTTTCAAG+AGG | - | chr7.2:82481963-82481982 | MS.gene48549:CDS | 30.0% |
| AAACAAGTGGGTGAAATAAG+AGG | + | chr7.2:82480990-82481009 | None:intergenic | 35.0% | |
| AACAAGTGGGTGAAATAAGA+GGG | + | chr7.2:82480989-82481008 | None:intergenic | 35.0% | |
| ACTCCATTTGTAACCATAGA+AGG | + | chr7.2:82481638-82481657 | None:intergenic | 35.0% | |
| AGATGAAGGTCTCACAAAAT+GGG | - | chr7.2:82481570-82481589 | MS.gene48549:CDS | 35.0% | |
| ATGTTGCAAACAACTTGGAT+TGG | - | chr7.2:82481449-82481468 | MS.gene48549:CDS | 35.0% | |
| CTATGGTTACAAATGGAGTT+TGG | - | chr7.2:82481639-82481658 | MS.gene48549:CDS | 35.0% | |
| CTCCATTTGTAACCATAGAA+GGG | + | chr7.2:82481637-82481656 | None:intergenic | 35.0% | |
| TAACTGAATGGTTTCAGTGA+AGG | + | chr7.2:82481086-82481105 | None:intergenic | 35.0% | |
| TACCCTTCTATGGTTACAAA+TGG | - | chr7.2:82481632-82481651 | MS.gene48549:CDS | 35.0% | |
| TCAAGATGTTGCAAACAACT+TGG | - | chr7.2:82481444-82481463 | MS.gene48549:CDS | 35.0% | |
| TGCAAATGCACAAAACAAGT+GGG | + | chr7.2:82481002-82481021 | None:intergenic | 35.0% | |
| TGTTGCAAACAACTTGGATT+GGG | - | chr7.2:82481450-82481469 | MS.gene48549:CDS | 35.0% | |
| TTGTAGAAGAAATGGTGACT+TGG | + | chr7.2:82481045-82481064 | None:intergenic | 35.0% | |
| TTGTAGAGGAAAATTGGAGT+TGG | + | chr7.2:82480904-82480923 | None:intergenic | 35.0% | |
| ! | CTTGGTTGGTATTAGAATCA+AGG | + | chr7.2:82481027-82481046 | None:intergenic | 35.0% |
| ! | GGATATTTTGCTTGGCAAAT+TGG | - | chr7.2:82481871-82481890 | MS.gene48549:CDS | 35.0% |
| ! | TCCAAACAATCCATTTTGCT+TGG | + | chr7.2:82481854-82481873 | None:intergenic | 35.0% |
| !! | AGTTGTTATTTCTGGCTAGT+CGG | + | chr7.2:82481237-82481256 | None:intergenic | 35.0% |
| !! | GTTTGAGTTGGATAACTATC+TGG | + | chr7.2:82481505-82481524 | None:intergenic | 35.0% |
| !! | TTGAGTTGGATAACTATCTG+GGG | + | chr7.2:82481503-82481522 | None:intergenic | 35.0% |
| AAGGTCTCACAAAATGGGTA+GGG | - | chr7.2:82481575-82481594 | MS.gene48549:CDS | 40.0% | |
| AATGTTGTTATCTGCTGCAG+TGG | - | chr7.2:82481381-82481400 | MS.gene48549:CDS | 40.0% | |
| AATTGGACTCTTTCTCAAGC+AGG | - | chr7.2:82481904-82481923 | MS.gene48549:CDS | 40.0% | |
| AGCTGCGTTTGTAGAAGAAA+TGG | + | chr7.2:82481053-82481072 | None:intergenic | 40.0% | |
| ATGTTGTTATCTGCTGCAGT+GGG | - | chr7.2:82481382-82481401 | MS.gene48549:CDS | 40.0% | |
| ATTGGAGTTGGAGAATCATG+AGG | + | chr7.2:82480892-82480911 | None:intergenic | 40.0% | |
| CAGATGAAGGTCTCACAAAA+TGG | - | chr7.2:82481569-82481588 | MS.gene48549:CDS | 40.0% | |
| CAGCGTTTGTAGAGGAAAAT+TGG | + | chr7.2:82480910-82480929 | None:intergenic | 40.0% | |
| CCAAAAAGCAAACTTGCACT+TGG | - | chr7.2:82481607-82481626 | MS.gene48549:CDS | 40.0% | |
| CTGCAAATGCACAAAACAAG+TGG | + | chr7.2:82481003-82481022 | None:intergenic | 40.0% | |
| CTGCCATTAAAGGTGGTTAT+TGG | - | chr7.2:82480927-82480946 | MS.gene48549:CDS | 40.0% | |
| GACCTTCATCTGCACTAAAT+TGG | + | chr7.2:82481561-82481580 | None:intergenic | 40.0% | |
| GACGTTGAAATGACCAACTT+TGG | - | chr7.2:82481295-82481314 | MS.gene48549:CDS | 40.0% | |
| GATCAATCTCAGAAACTGCA+AGG | + | chr7.2:82480967-82480986 | None:intergenic | 40.0% | |
| GCAGCAGATAACAACATTTC+CGG | + | chr7.2:82481379-82481398 | None:intergenic | 40.0% | |
| GCCAGAAATAACAACTTCCA+TGG | - | chr7.2:82481241-82481260 | MS.gene48549:CDS | 40.0% | |
| GTTGCTTATGCCAAGCAAAA+TGG | - | chr7.2:82481841-82481860 | MS.gene48549:CDS | 40.0% | |
| TCTACAAACGCTGCCATTAA+AGG | - | chr7.2:82480917-82480936 | MS.gene48549:CDS | 40.0% | |
| TGTGCTTTAGTAGAACGTTC+AGG | + | chr7.2:82481154-82481173 | None:intergenic | 40.0% | |
| TGTTTGCAACATCTTGACCT+GGG | + | chr7.2:82481441-82481460 | None:intergenic | 40.0% | |
| TTCAAAGGGACAGATTGGTA+TGG | - | chr7.2:82481787-82481806 | MS.gene48549:CDS | 40.0% | |
| TTGGTTTACTCATTACAGCG+TGG | - | chr7.2:82481314-82481333 | MS.gene48549:CDS | 40.0% | |
| TTGTTTGCAACATCTTGACC+TGG | + | chr7.2:82481442-82481461 | None:intergenic | 40.0% | |
| TTTAATGGCAGCGTTTGTAG+AGG | + | chr7.2:82480918-82480937 | None:intergenic | 40.0% | |
| ! | ACGCTTTTATCAATTGGTGG+TGG | - | chr7.2:82481124-82481143 | MS.gene48549:CDS | 40.0% |
| ! | CAAGAGGAACGAATGCTTTT+TGG | + | chr7.2:82480858-82480877 | None:intergenic | 40.0% |
| ! | TATGAACGATTTTCGGCTAC+TGG | + | chr7.2:82481203-82481222 | None:intergenic | 40.0% |
| !! | AGAAGAAATGGTGACTTGGT+TGG | + | chr7.2:82481041-82481060 | None:intergenic | 40.0% |
| !! | AGTTGGGTTTTTCAAAGGAG+CGG | + | chr7.2:82481536-82481555 | None:intergenic | 40.0% |
| !! | CCAAGTGCAAGTTTGCTTTT+TGG | + | chr7.2:82481610-82481629 | None:intergenic | 40.0% |
| !! | GCCAAGCAAAATGGATTGTT+TGG | - | chr7.2:82481850-82481869 | MS.gene48549:CDS | 40.0% |
| !! | GCCATGGAAGTTGTTATTTC+TGG | + | chr7.2:82481245-82481264 | None:intergenic | 40.0% |
| !!! | CTTTTATCAATTGGTGGTGG+TGG | - | chr7.2:82481127-82481146 | MS.gene48549:CDS | 40.0% |
| ACAAACGCTGCCATTAAAGG+TGG | - | chr7.2:82480920-82480939 | MS.gene48549:CDS | 45.0% | |
| ACTGCTTCAAAGGGACAGAT+TGG | - | chr7.2:82481782-82481801 | MS.gene48549:CDS | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | - | chr7.2:82481819-82481838 | MS.gene48549:CDS | 45.0% | |
| CTCACAAAATGGGTAGGGTT+AGG | - | chr7.2:82481580-82481599 | MS.gene48549:CDS | 45.0% | |
| CTGCACTAAATTGGCCAGTT+GGG | + | chr7.2:82481552-82481571 | None:intergenic | 45.0% | |
| GAAGGTCTCACAAAATGGGT+AGG | - | chr7.2:82481574-82481593 | MS.gene48549:CDS | 45.0% | |
| GATACAGCCAGTCAAGATCA+AGG | + | chr7.2:82481267-82481286 | None:intergenic | 45.0% | |
| GCACTTGGTTTACCCTTCTA+TGG | - | chr7.2:82481622-82481641 | MS.gene48549:CDS | 45.0% | |
| GGCCAATTTAGTGCAGATGA+AGG | - | chr7.2:82481556-82481575 | MS.gene48549:CDS | 45.0% | |
| GTCATTTCAACGTCTGAGGA+TGG | + | chr7.2:82481289-82481308 | None:intergenic | 45.0% | |
| GTTGGTCATTTCAACGTCTG+AGG | + | chr7.2:82481293-82481312 | None:intergenic | 45.0% | |
| TCTGCACTAAATTGGCCAGT+TGG | + | chr7.2:82481553-82481572 | None:intergenic | 45.0% | |
| TGACCTGGGTAGTACTTCAA+TGG | + | chr7.2:82481427-82481446 | None:intergenic | 45.0% | |
| TGAGGAGAGTGGAAATCAAG+AGG | + | chr7.2:82480874-82480893 | None:intergenic | 45.0% | |
| TTGCTTGGCATAAGCAACCT+TGG | + | chr7.2:82481839-82481858 | None:intergenic | 45.0% | |
| TTGGAGAATCATGAGGAGAG+TGG | + | chr7.2:82480885-82480904 | None:intergenic | 45.0% | |
| ! | ACTCCATTGAAGTACTACCC+AGG | - | chr7.2:82481421-82481440 | MS.gene48549:CDS | 45.0% |
| ! | GCTCCTTTGAAAAACCCAAC+TGG | - | chr7.2:82481535-82481554 | MS.gene48549:CDS | 45.0% |
| ! | TAACAACATTTCCGGCTTGC+CGG | + | chr7.2:82481371-82481390 | None:intergenic | 45.0% |
| !! | GTTGGGTTTTTCAAAGGAGC+GGG | + | chr7.2:82481535-82481554 | None:intergenic | 45.0% |
| !! | TGGCCAGTTGGGTTTTTCAA+AGG | + | chr7.2:82481541-82481560 | None:intergenic | 45.0% |
| ACTAGGGGCAGTGAAGTACA+AGG | - | chr7.2:82481705-82481724 | MS.gene48549:CDS | 50.0% | |
| AGTAAAGCTACGGAGGGACT+AGG | - | chr7.2:82481688-82481707 | MS.gene48549:CDS | 50.0% | |
| GTAAAGCTACGGAGGGACTA+GGG | - | chr7.2:82481689-82481708 | MS.gene48549:CDS | 50.0% | |
| TAAAGCTACGGAGGGACTAG+GGG | - | chr7.2:82481690-82481709 | MS.gene48549:CDS | 50.0% | |
| TTGTTATCTGCTGCAGTGGG+TGG | - | chr7.2:82481385-82481404 | MS.gene48549:CDS | 50.0% | |
| ! | TCCATGGCCTTGATCTTGAC+TGG | - | chr7.2:82481257-82481276 | MS.gene48549:CDS | 50.0% |
| !! | ACGATTTTCGGCTACTGGCT+TGG | + | chr7.2:82481198-82481217 | None:intergenic | 50.0% |
| !! | ACTGGCTTGGCTAGACATGT+TGG | + | chr7.2:82481185-82481204 | None:intergenic | 50.0% |
| GCCAGTCAAGATCAAGGCCA+TGG | + | chr7.2:82481261-82481280 | None:intergenic | 55.0% | |
| GCGGGTGGTTGTGTTTGAGT+TGG | + | chr7.2:82481517-82481536 | None:intergenic | 55.0% | |
| !! | GGGTTTTTCAAAGGAGCGGG+TGG | + | chr7.2:82481532-82481551 | None:intergenic | 55.0% |
| GCCGCAGAGTCTAGGAGTTC+CGG | - | chr7.2:82481349-82481368 | MS.gene48549:CDS | 60.0% | |
| GCCGGAACTCCTAGACTCTG+CGG | + | chr7.2:82481353-82481372 | None:intergenic | 60.0% | |
| GTCTAGGAGTTCCGGCAAGC+CGG | - | chr7.2:82481357-82481376 | MS.gene48549:CDS | 60.0% | |
| TACAGCGTGGAGAGCTGCTG+TGG | - | chr7.2:82481327-82481346 | MS.gene48549:CDS | 60.0% | |
| CTGCTGTGGCCGCAGAGTCT+AGG | - | chr7.2:82481341-82481360 | MS.gene48549:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 82480845 | 82482026 | 82480845 | ID=MS.gene48549 |
| chr7.2 | mRNA | 82480845 | 82482026 | 82480845 | ID=MS.gene48549.t1;Parent=MS.gene48549 |
| chr7.2 | exon | 82480845 | 82482026 | 82480845 | ID=MS.gene48549.t1.exon1;Parent=MS.gene48549.t1 |
| chr7.2 | CDS | 82480845 | 82482026 | 82480845 | ID=cds.MS.gene48549.t1;Parent=MS.gene48549.t1 |
| Gene Sequence |
| Protein sequence |
