Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014611.t1 | PNY09053.1 | 92.7 | 358 | 26 | 0 | 1 | 358 | 1 | 358 | 6.30E-190 | 673.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014611.t1 | O81862 | 51.1 | 364 | 165 | 6 | 11 | 365 | 9 | 368 | 1.2e-91 | 338.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014611.t1 | A0A2K3P1D5 | 92.7 | 358 | 26 | 0 | 1 | 358 | 1 | 358 | 4.5e-190 | 673.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014611 | MS.gene72023 | PPI |
| MS.gene58750 | MS.gene014611 | PPI |
| MS.gene014611 | MS.gene021954 | PPI |
| MS.gene014611 | MS.gene72022 | PPI |
| MS.gene44682 | MS.gene014611 | PPI |
| MS.gene055584 | MS.gene014611 | PPI |
| MS.gene014609 | MS.gene014611 | PPI |
| MS.gene40255 | MS.gene014611 | PPI |
| MS.gene014611 | MS.gene48549 | PPI |
| MS.gene014611 | MS.gene40257 | PPI |
| MS.gene014611 | MS.gene44679 | PPI |
| MS.gene53841 | MS.gene014611 | PPI |
| MS.gene014611 | MS.gene57747 | PPI |
| MS.gene014611 | MS.gene014610 | PPI |
| MS.gene40706 | MS.gene014611 | PPI |
| MS.gene014611 | MS.gene036626 | PPI |
| MS.gene014611 | MS.gene40705 | PPI |
| MS.gene014611 | MS.gene40707 | PPI |
| MS.gene014611 | MS.gene44682 | PPI |
| MS.gene014611 | MS.gene041428 | PPI |
| MS.gene72024 | MS.gene014611 | PPI |
| MS.gene014611 | MS.gene021944 | PPI |
| MS.gene014611 | MS.gene72024 | PPI |
| MS.gene014611 | MS.gene40256 | PPI |
| MS.gene014611 | MS.gene43244 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014611.t1 | MTR_3g110320 | 83.242 | 364 | 61 | 0 | 1 | 364 | 1 | 364 | 0.0 | 631 |
| MS.gene014611.t1 | MTR_3g110280 | 87.187 | 359 | 45 | 1 | 1 | 358 | 1 | 359 | 0.0 | 629 |
| MS.gene014611.t1 | MTR_3g110320 | 83.565 | 359 | 59 | 0 | 1 | 359 | 1 | 359 | 0.0 | 626 |
| MS.gene014611.t1 | MTR_4g116920 | 85.000 | 360 | 38 | 3 | 1 | 359 | 1 | 345 | 0.0 | 598 |
| MS.gene014611.t1 | MTR_1g013150 | 35.112 | 356 | 214 | 5 | 22 | 364 | 32 | 383 | 6.03e-65 | 211 |
| MS.gene014611.t1 | MTR_4g117040 | 38.040 | 347 | 188 | 9 | 30 | 359 | 28 | 364 | 2.28e-62 | 213 |
| MS.gene014611.t1 | MTR_4g117000 | 34.870 | 347 | 210 | 7 | 29 | 363 | 34 | 376 | 1.44e-60 | 199 |
| MS.gene014611.t1 | MTR_4g117020 | 33.693 | 371 | 222 | 9 | 3 | 359 | 2 | 362 | 1.01e-58 | 203 |
| MS.gene014611.t1 | MTR_4g116990 | 36.517 | 356 | 196 | 8 | 29 | 363 | 36 | 382 | 1.12e-58 | 195 |
| MS.gene014611.t1 | MTR_4g117030 | 35.435 | 333 | 193 | 8 | 41 | 359 | 1 | 325 | 1.39e-56 | 196 |
| MS.gene014611.t1 | MTR_4g117800 | 34.286 | 175 | 113 | 1 | 6 | 180 | 4 | 176 | 6.18e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014611.t1 | AT4G19810 | 52.316 | 367 | 156 | 7 | 11 | 365 | 9 | 368 | 4.18e-120 | 352 |
| MS.gene014611.t1 | AT4G19810 | 52.316 | 367 | 156 | 7 | 11 | 365 | 9 | 368 | 4.18e-120 | 352 |
| MS.gene014611.t1 | AT4G19820 | 47.671 | 365 | 178 | 6 | 10 | 365 | 6 | 366 | 6.74e-105 | 313 |
| MS.gene014611.t1 | AT4G19760 | 45.283 | 371 | 173 | 10 | 17 | 363 | 1 | 365 | 5.94e-95 | 288 |
| MS.gene014611.t1 | AT4G19800 | 45.588 | 340 | 171 | 6 | 30 | 360 | 7 | 341 | 1.95e-93 | 285 |
| MS.gene014611.t1 | AT4G19750 | 45.000 | 360 | 178 | 9 | 17 | 362 | 1 | 354 | 2.15e-93 | 283 |
| MS.gene014611.t1 | AT4G19720 | 44.068 | 354 | 173 | 8 | 30 | 365 | 6 | 352 | 1.64e-88 | 271 |
| MS.gene014611.t1 | AT4G19730 | 42.308 | 338 | 166 | 9 | 17 | 331 | 1 | 332 | 4.63e-71 | 225 |
| MS.gene014611.t1 | AT4G19770 | 41.406 | 256 | 140 | 4 | 113 | 360 | 1 | 254 | 8.19e-57 | 186 |
| MS.gene014611.t1 | AT4G19740 | 36.126 | 191 | 108 | 5 | 136 | 316 | 24 | 210 | 5.04e-28 | 109 |
Find 89 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATTGAAGTTGTTATTTC+TGG | 0.094267 | 3.1:+88307424 | None:intergenic |
| CCCCACCACCAATTGATAAA+AGG | 0.195506 | 3.1:+88307534 | None:intergenic |
| GTTACTAATTATTGCTTCAT+AGG | 0.237729 | 3.1:-88306894 | MS.gene014611:CDS |
| TCTGCAAAAGCTGAAATTAA+AGG | 0.269287 | 3.1:-88307743 | MS.gene014611:CDS |
| GCCAAGCAAAATGGATTGTT+TGG | 0.270489 | 3.1:-88306816 | MS.gene014611:CDS |
| GTTGCTTATGCCAAGCAAAA+TGG | 0.325981 | 3.1:-88306825 | MS.gene014611:CDS |
| ATAAAGCTACACAGGGGCTT+GGG | 0.335713 | 3.1:-88306977 | MS.gene014611:CDS |
| ACCCAAGAGTCTAGCAGTTC+TGG | 0.345855 | 3.1:-88307317 | MS.gene014611:CDS |
| TGCCAGAACTGCTAGACTCT+TGG | 0.370329 | 3.1:+88307315 | None:intergenic |
| ATATTGAACAAGACAGCAAC+TGG | 0.377045 | 3.1:-88306779 | MS.gene014611:CDS |
| ACAAGGATATAATAAATGTT+GGG | 0.382597 | 3.1:-88306944 | MS.gene014611:CDS |
| ACTGGCTTGGCTAGCCATAT+TGG | 0.395681 | 3.1:+88307484 | None:intergenic |
| TTCCTTCATCTGCACTGAAC+TGG | 0.404343 | 3.1:+88307108 | None:intergenic |
| GATAAAGCTACACAGGGGCT+TGG | 0.405269 | 3.1:-88306978 | MS.gene014611:CDS |
| CTGCACTGAACTGGCCTGTC+GGG | 0.414245 | 3.1:+88307117 | None:intergenic |
| CAGATGAAGGAATCACAAAA+TGG | 0.416610 | 3.1:-88307097 | MS.gene014611:CDS |
| TCAATGGTCTTGATCTTGAC+TGG | 0.423081 | 3.1:-88307409 | MS.gene014611:CDS |
| TGAACTACTCTTTGCCTGAA+TGG | 0.425900 | 3.1:+88307565 | None:intergenic |
| CCCACCACCAATTGATAAAA+GGG | 0.428641 | 3.1:+88307535 | None:intergenic |
| ATTGCTTCATAGGGACAGAT+TGG | 0.433223 | 3.1:-88306884 | MS.gene014611:CDS |
| GAAGGAATCACAAAATGGAT+TGG | 0.434027 | 3.1:-88307092 | MS.gene014611:CDS |
| GCCAGAACTGCTAGACTCTT+GGG | 0.439126 | 3.1:+88307316 | None:intergenic |
| TATTGCAAGCAACTTGGATT+GGG | 0.441089 | 3.1:-88307216 | MS.gene014611:CDS |
| GACCTGGGTAGTATTCCAAT+GGG | 0.443214 | 3.1:+88307243 | None:intergenic |
| ATCACAAAATGGATTGGGTT+AGG | 0.444351 | 3.1:-88307086 | MS.gene014611:CDS |
| TTACTAATTATTGCTTCATA+GGG | 0.446458 | 3.1:-88306893 | MS.gene014611:CDS |
| CTGAAATTAAAGGTGGCTAT+TGG | 0.446672 | 3.1:-88307733 | MS.gene014611:CDS |
| GATTGTTTGGATACTTTGCT+TGG | 0.448742 | 3.1:-88306803 | MS.gene014611:CDS |
| TATAATAAATGTTGGGGCGC+AGG | 0.450194 | 3.1:-88306937 | MS.gene014611:CDS |
| TACAAGGATATAATAAATGT+TGG | 0.455760 | 3.1:-88306945 | MS.gene014611:CDS |
| GAACAAGTGGGTGAAATAAG+AGG | 0.458120 | 3.1:+88307673 | None:intergenic |
| GATAACTATCTGAGGTGAAA+AGG | 0.460405 | 3.1:+88307174 | None:intergenic |
| CTTGGTTGGTATTAGAATCA+AGG | 0.461412 | 3.1:+88307636 | None:intergenic |
| AACCTTCACTGAAACCATTC+AGG | 0.468884 | 3.1:-88307579 | MS.gene014611:CDS |
| AGCTGCGTTTGCAGAAGAAA+TGG | 0.471700 | 3.1:+88307610 | None:intergenic |
| AAGGAATCACAAAATGGATT+GGG | 0.476468 | 3.1:-88307091 | MS.gene014611:CDS |
| GCCTTGTCTGTGTCTGAGGA+TGG | 0.481902 | 3.1:+88307380 | None:intergenic |
| ATATTGCAAGCAACTTGGAT+TGG | 0.487324 | 3.1:-88307217 | MS.gene014611:CDS |
| GGCTATTGGTATTCTGATAG+TGG | 0.488891 | 3.1:-88307719 | MS.gene014611:CDS |
| AACTGGGCTCTTTCTCAAGC+AGG | 0.494078 | 3.1:-88306762 | MS.gene014611:intron |
| GCATTGGGTGTACCTTTCTA+CGG | 0.499133 | 3.1:-88307044 | MS.gene014611:CDS |
| TCTGCACTGAACTGGCCTGT+CGG | 0.505960 | 3.1:+88307116 | None:intergenic |
| TCAGGATATTGCAAGCAACT+TGG | 0.506566 | 3.1:-88307222 | MS.gene014611:CDS |
| TGCCTGAATGGTTTCAGTGA+AGG | 0.506803 | 3.1:+88307577 | None:intergenic |
| GTCTAGCAGTTCTGGCAAGC+CGG | 0.512533 | 3.1:-88307309 | MS.gene014611:CDS |
| CAATGGTCTTGATCTTGACT+GGG | 0.517624 | 3.1:-88307408 | MS.gene014611:CDS |
| AGTTGTTATTTCTGGCAAGT+TGG | 0.519658 | 3.1:+88307432 | None:intergenic |
| TTGCAGAAGAGAATTGGAGT+TGG | 0.520791 | 3.1:+88307759 | None:intergenic |
| TGTAATGAGTAAACCGAAGT+TGG | 0.521710 | 3.1:+88307358 | None:intergenic |
| TACCTTTCTACGGTTTCAAG+TGG | 0.524260 | 3.1:-88307034 | MS.gene014611:CDS |
| CTCTGATCAGATCACCCCAT+TGG | 0.524686 | 3.1:-88307258 | MS.gene014611:CDS |
| GCAATAATTAGTAACATATG+TGG | 0.528980 | 3.1:+88306902 | None:intergenic |
| TTGCTTGCAATATCCTGACC+TGG | 0.530546 | 3.1:+88307227 | None:intergenic |
| GCCAGAAATAACAACTTCAA+TGG | 0.532857 | 3.1:-88307425 | MS.gene014611:CDS |
| TGACCTGGGTAGTATTCCAA+TGG | 0.537501 | 3.1:+88307242 | None:intergenic |
| TTGCTTGGCATAAGCAACCT+TGG | 0.538135 | 3.1:+88306830 | None:intergenic |
| CTGTTATCTGTTGCAGTGGG+TGG | 0.539076 | 3.1:-88307281 | MS.gene014611:CDS |
| CTCCACTTGAAACCGTAGAA+AGG | 0.540691 | 3.1:+88307032 | None:intergenic |
| GACACAGACAAGGCCAACTT+CGG | 0.549309 | 3.1:-88307371 | MS.gene014611:CDS |
| CTGCTGTTATCTGTTGCAGT+GGG | 0.550549 | 3.1:-88307284 | MS.gene014611:CDS |
| GTTGGCCTTGTCTGTGTCTG+AGG | 0.557959 | 3.1:+88307376 | None:intergenic |
| CTGCAAATGCACAGAACAAG+TGG | 0.562193 | 3.1:+88307660 | None:intergenic |
| GGCCAGTTCAGTGCAGATGA+AGG | 0.565062 | 3.1:-88307110 | MS.gene014611:CDS |
| GCAACAGATAACAGCAGTGC+CGG | 0.569645 | 3.1:+88307290 | None:intergenic |
| ATTGGAATACTACCCAGGTC+AGG | 0.570178 | 3.1:-88307240 | MS.gene014611:CDS |
| AACAAGTGGGTGAAATAAGA+GGG | 0.575691 | 3.1:+88307674 | None:intergenic |
| ATTGGAGTTGGAGAATCATG+AGG | 0.580602 | 3.1:+88307771 | None:intergenic |
| TAAAGCTACACAGGGGCTTG+GGG | 0.584711 | 3.1:-88306976 | MS.gene014611:CDS |
| GCAGGTGGTTGTGTCGTGGT+TGG | 0.585458 | 3.1:+88307152 | None:intergenic |
| CACTCAGAGTATATCTGCCA+AGG | 0.587655 | 3.1:-88306847 | MS.gene014611:CDS |
| TGAGGAGAGTAGAAATCAAG+AGG | 0.589315 | 3.1:+88307789 | None:intergenic |
| TTGCAGAAGAAATGGTGACT+TGG | 0.590390 | 3.1:+88307618 | None:intergenic |
| CAAGGATATAATAAATGTTG+GGG | 0.596445 | 3.1:-88306943 | MS.gene014611:CDS |
| AGAAGAAATGGTGACTTGGT+TGG | 0.609583 | 3.1:+88307622 | None:intergenic |
| GCTTGGGGCAGTGAAGTACA+AGG | 0.610199 | 3.1:-88306961 | MS.gene014611:CDS |
| ACCCCATTGGAATACTACCC+AGG | 0.610645 | 3.1:-88307245 | MS.gene014611:CDS |
| TTCATAGGGACAGATTGGTA+TGG | 0.610823 | 3.1:-88306879 | MS.gene014611:CDS |
| GCAAAAGCTGAAATTAAAGG+TGG | 0.612217 | 3.1:-88307740 | MS.gene014611:CDS |
| ACTGCTGTTATCTGTTGCAG+TGG | 0.625070 | 3.1:-88307285 | MS.gene014611:CDS |
| TGCAGCTTCTCTAGCATGGG+CGG | 0.626467 | 3.1:-88306595 | MS.gene014611:intron |
| TGCTTGCAATATCCTGACCT+GGG | 0.628937 | 3.1:+88307228 | None:intergenic |
| GATCAATGTCAGAAACTGCA+AGG | 0.646791 | 3.1:+88307696 | None:intergenic |
| TCCATCCTCAGACACAGACA+AGG | 0.662423 | 3.1:-88307381 | MS.gene014611:CDS |
| AGGAGCAGGTGGTTGTGTCG+TGG | 0.663999 | 3.1:+88307148 | None:intergenic |
| TATTGAACAAGACAGCAACT+GGG | 0.675280 | 3.1:-88306778 | MS.gene014611:CDS |
| TCGGTTTACTCATTACAGAG+TGG | 0.678345 | 3.1:-88307352 | MS.gene014611:CDS |
| CGTGGTTGGATAACTATCTG+AGG | 0.680417 | 3.1:+88307166 | None:intergenic |
| TGCAAATGCACAGAACAAGT+GGG | 0.684809 | 3.1:+88307661 | None:intergenic |
| ACCTGGGTAGTATTCCAATG+GGG | 0.748799 | 3.1:+88307244 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAGGATATAATAAATGTT+GGG | - | chr3.1:88307461-88307480 | MS.gene014611:CDS | 20.0% |
| !! | TACAAGGATATAATAAATGT+TGG | - | chr3.1:88307460-88307479 | MS.gene014611:CDS | 20.0% |
| !! | TCAAAAATATCATGGTTATT+AGG | + | chr3.1:88307409-88307428 | None:intergenic | 20.0% |
| !! | TTACTAATTATTGCTTCATA+GGG | - | chr3.1:88307512-88307531 | MS.gene014611:CDS | 20.0% |
| !!! | TAGCTTTATCAAAAATATCA+TGG | + | chr3.1:88307417-88307436 | None:intergenic | 20.0% |
| ! | CAAGGATATAATAAATGTTG+GGG | - | chr3.1:88307462-88307481 | MS.gene014611:CDS | 25.0% |
| ! | GCAATAATTAGTAACATATG+TGG | + | chr3.1:88307506-88307525 | None:intergenic | 25.0% |
| ! | GTTACTAATTATTGCTTCAT+AGG | - | chr3.1:88307511-88307530 | MS.gene014611:CDS | 25.0% |
| !! | AAGAATCTATGAACGATTTT+CGG | + | chr3.1:88306949-88306968 | None:intergenic | 25.0% |
| !! | ATTTTTGATAAAGCTACACA+GGG | - | chr3.1:88307421-88307440 | MS.gene014611:CDS | 25.0% |
| !!! | GAATGAATGTTTTTTTGAGT+AGG | + | chr3.1:88306597-88306616 | None:intergenic | 25.0% |
| !!! | TATTTTTGATAAAGCTACAC+AGG | - | chr3.1:88307420-88307439 | MS.gene014611:CDS | 25.0% |
| CAACGAAGCTATGTTTAATT+AGG | + | chr3.1:88307684-88307703 | None:intergenic | 30.0% | |
| TCTGCAAAAGCTGAAATTAA+AGG | - | chr3.1:88306662-88306681 | MS.gene014611:intron | 30.0% | |
| ! | AAAACCCTTTTATCAATTGG+TGG | - | chr3.1:88306866-88306885 | MS.gene014611:CDS | 30.0% |
| ! | AAGGAATCACAAAATGGATT+GGG | - | chr3.1:88307314-88307333 | MS.gene014611:CDS | 30.0% |
| ! | GTGAAAACCCTTTTATCAAT+TGG | - | chr3.1:88306863-88306882 | MS.gene014611:CDS | 30.0% |
| ! | TTTTTGATAAAGCTACACAG+GGG | - | chr3.1:88307422-88307441 | MS.gene014611:CDS | 30.0% |
| !! | ACCATTGAAGTTGTTATTTC+TGG | + | chr3.1:88306984-88307003 | None:intergenic | 30.0% |
| AACAAGTGGGTGAAATAAGA+GGG | + | chr3.1:88306734-88306753 | None:intergenic | 35.0% | |
| ATATTGAACAAGACAGCAAC+TGG | - | chr3.1:88307626-88307645 | MS.gene014611:CDS | 35.0% | |
| ATATTGCAAGCAACTTGGAT+TGG | - | chr3.1:88307188-88307207 | MS.gene014611:CDS | 35.0% | |
| CAGATGAAGGAATCACAAAA+TGG | - | chr3.1:88307308-88307327 | MS.gene014611:CDS | 35.0% | |
| CCAAAAAGCAAACTAGCATT+GGG | - | chr3.1:88307346-88307365 | MS.gene014611:CDS | 35.0% | |
| CTGAAATTAAAGGTGGCTAT+TGG | - | chr3.1:88306672-88306691 | MS.gene014611:intron | 35.0% | |
| CTGATTGTGAGTCATTCTAA+CGG | - | chr3.1:88307764-88307783 | MS.gene014611:CDS | 35.0% | |
| GAAGGAATCACAAAATGGAT+TGG | - | chr3.1:88307313-88307332 | MS.gene014611:CDS | 35.0% | |
| GATTGTTTGGATACTTTGCT+TGG | - | chr3.1:88307602-88307621 | MS.gene014611:CDS | 35.0% | |
| GCAAAAGCTGAAATTAAAGG+TGG | - | chr3.1:88306665-88306684 | MS.gene014611:intron | 35.0% | |
| GCCAGAAATAACAACTTCAA+TGG | - | chr3.1:88306980-88306999 | MS.gene014611:CDS | 35.0% | |
| GGCACAAAAATTTGCCAATA+TGG | - | chr3.1:88306907-88306926 | MS.gene014611:CDS | 35.0% | |
| TATTGAACAAGACAGCAACT+GGG | - | chr3.1:88307627-88307646 | MS.gene014611:CDS | 35.0% | |
| TATTGCAAGCAACTTGGATT+GGG | - | chr3.1:88307189-88307208 | MS.gene014611:CDS | 35.0% | |
| TCCAAAAAGCAAACTAGCAT+TGG | - | chr3.1:88307345-88307364 | MS.gene014611:CDS | 35.0% | |
| TGATTGTGAGTCATTCTAAC+GGG | - | chr3.1:88307765-88307784 | MS.gene014611:CDS | 35.0% | |
| TGTAATGAGTAAACCGAAGT+TGG | + | chr3.1:88307050-88307069 | None:intergenic | 35.0% | |
| ! | CTTGGTTGGTATTAGAATCA+AGG | + | chr3.1:88306772-88306791 | None:intergenic | 35.0% |
| ! | GATAACTATCTGAGGTGAAA+AGG | + | chr3.1:88307234-88307253 | None:intergenic | 35.0% |
| ! | GCAAATTTTTGTGCCAAAGT+AGG | + | chr3.1:88306902-88306921 | None:intergenic | 35.0% |
| ! | TCCAAACAATCCATTTTGCT+TGG | + | chr3.1:88307593-88307612 | None:intergenic | 35.0% |
| !! | AGTTGTTATTTCTGGCAAGT+TGG | + | chr3.1:88306976-88306995 | None:intergenic | 35.0% |
| !! | ATCACAAAATGGATTGGGTT+AGG | - | chr3.1:88307319-88307338 | MS.gene014611:CDS | 35.0% |
| AACCTTCACTGAAACCATTC+AGG | - | chr3.1:88306826-88306845 | MS.gene014611:CDS | 40.0% | |
| ATTGCTTCATAGGGACAGAT+TGG | - | chr3.1:88307521-88307540 | MS.gene014611:CDS | 40.0% | |
| ATTGGAGTTGGAGAATCATG+AGG | + | chr3.1:88306637-88306656 | None:intergenic | 40.0% | |
| CCCACCACCAATTGATAAAA+GGG | + | chr3.1:88306873-88306892 | None:intergenic | 40.0% | |
| GAACAAGTGGGTGAAATAAG+AGG | + | chr3.1:88306735-88306754 | None:intergenic | 40.0% | |
| GATCAATGTCAGAAACTGCA+AGG | + | chr3.1:88306712-88306731 | None:intergenic | 40.0% | |
| GGCTATTGGTATTCTGATAG+TGG | - | chr3.1:88306686-88306705 | MS.gene014611:intron | 40.0% | |
| GTTGCTTATGCCAAGCAAAA+TGG | - | chr3.1:88307580-88307599 | MS.gene014611:CDS | 40.0% | |
| TACCTTTCTACGGTTTCAAG+TGG | - | chr3.1:88307371-88307390 | MS.gene014611:CDS | 40.0% | |
| TATAATAAATGTTGGGGCGC+AGG | - | chr3.1:88307468-88307487 | MS.gene014611:CDS | 40.0% | |
| TCAGGATATTGCAAGCAACT+TGG | - | chr3.1:88307183-88307202 | MS.gene014611:CDS | 40.0% | |
| TCGGTTTACTCATTACAGAG+TGG | - | chr3.1:88307053-88307072 | MS.gene014611:CDS | 40.0% | |
| TGAACTACTCTTTGCCTGAA+TGG | + | chr3.1:88306843-88306862 | None:intergenic | 40.0% | |
| TGAGGAGAGTAGAAATCAAG+AGG | + | chr3.1:88306619-88306638 | None:intergenic | 40.0% | |
| TGCAAATGCACAGAACAAGT+GGG | + | chr3.1:88306747-88306766 | None:intergenic | 40.0% | |
| TTCATAGGGACAGATTGGTA+TGG | - | chr3.1:88307526-88307545 | MS.gene014611:CDS | 40.0% | |
| TTGCAGAAGAAATGGTGACT+TGG | + | chr3.1:88306790-88306809 | None:intergenic | 40.0% | |
| TTGCAGAAGAGAATTGGAGT+TGG | + | chr3.1:88306649-88306668 | None:intergenic | 40.0% | |
| ! | ACCCTTTTATCAATTGGTGG+TGG | - | chr3.1:88306869-88306888 | MS.gene014611:CDS | 40.0% |
| ! | CAATGGTCTTGATCTTGACT+GGG | - | chr3.1:88306997-88307016 | MS.gene014611:CDS | 40.0% |
| ! | CAGCTTTTGCAGAAGAGAAT+TGG | + | chr3.1:88306655-88306674 | None:intergenic | 40.0% |
| ! | TATGAACGATTTTCGGCTAC+TGG | + | chr3.1:88306942-88306961 | None:intergenic | 40.0% |
| ! | TCAATGGTCTTGATCTTGAC+TGG | - | chr3.1:88306996-88307015 | MS.gene014611:CDS | 40.0% |
| ! | TTTTGCAGCTTCTCTAGCAT+GGG | - | chr3.1:88307807-88307826 | MS.gene014611:CDS | 40.0% |
| ! | TTTTTGCAGCTTCTCTAGCA+TGG | - | chr3.1:88307806-88307825 | MS.gene014611:CDS | 40.0% |
| !! | AGAAGAAATGGTGACTTGGT+TGG | + | chr3.1:88306786-88306805 | None:intergenic | 40.0% |
| !! | CCCTTTTATCAATTGGTGGT+GGG | - | chr3.1:88306870-88306889 | MS.gene014611:CDS | 40.0% |
| !! | GCCAAGCAAAATGGATTGTT+TGG | - | chr3.1:88307589-88307608 | MS.gene014611:CDS | 40.0% |
| !!! | CCCAATGCTAGTTTGCTTTT+TGG | + | chr3.1:88307349-88307368 | None:intergenic | 40.0% |
| !!! | CCTTTTATCAATTGGTGGTG+GGG | - | chr3.1:88306871-88306890 | MS.gene014611:CDS | 40.0% |
| !!! | CTTTTATCAATTGGTGGTGG+GGG | - | chr3.1:88306872-88306891 | MS.gene014611:CDS | 40.0% |
| ACCTGGGTAGTATTCCAATG+GGG | + | chr3.1:88307164-88307183 | None:intergenic | 45.0% | |
| ACTGCTGTTATCTGTTGCAG+TGG | - | chr3.1:88307120-88307139 | MS.gene014611:CDS | 45.0% | |
| AGCTGCGTTTGCAGAAGAAA+TGG | + | chr3.1:88306798-88306817 | None:intergenic | 45.0% | |
| ATAAAGCTACACAGGGGCTT+GGG | - | chr3.1:88307428-88307447 | MS.gene014611:CDS | 45.0% | |
| ATTGGAATACTACCCAGGTC+AGG | - | chr3.1:88307165-88307184 | MS.gene014611:CDS | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | - | chr3.1:88307558-88307577 | MS.gene014611:CDS | 45.0% | |
| CCCCACCACCAATTGATAAA+AGG | + | chr3.1:88306874-88306893 | None:intergenic | 45.0% | |
| CGTGGTTGGATAACTATCTG+AGG | + | chr3.1:88307242-88307261 | None:intergenic | 45.0% | |
| CTCCACTTGAAACCGTAGAA+AGG | + | chr3.1:88307376-88307395 | None:intergenic | 45.0% | |
| CTGCAAATGCACAGAACAAG+TGG | + | chr3.1:88306748-88306767 | None:intergenic | 45.0% | |
| CTGCTGTTATCTGTTGCAGT+GGG | - | chr3.1:88307121-88307140 | MS.gene014611:CDS | 45.0% | |
| GACCTGGGTAGTATTCCAAT+GGG | + | chr3.1:88307165-88307184 | None:intergenic | 45.0% | |
| GCATTGGGTGTACCTTTCTA+CGG | - | chr3.1:88307361-88307380 | MS.gene014611:CDS | 45.0% | |
| TGACCTGGGTAGTATTCCAA+TGG | + | chr3.1:88307166-88307185 | None:intergenic | 45.0% | |
| TGCCTGAATGGTTTCAGTGA+AGG | + | chr3.1:88306831-88306850 | None:intergenic | 45.0% | |
| TGCTTGCAATATCCTGACCT+GGG | + | chr3.1:88307180-88307199 | None:intergenic | 45.0% | |
| TTCCTTCATCTGCACTGAAC+TGG | + | chr3.1:88307300-88307319 | None:intergenic | 45.0% | |
| TTGCTTGCAATATCCTGACC+TGG | + | chr3.1:88307181-88307200 | None:intergenic | 45.0% | |
| TTGCTTGGCATAAGCAACCT+TGG | + | chr3.1:88307578-88307597 | None:intergenic | 45.0% | |
| AACTGGGCTCTTTCTCAAGC+AGG | - | chr3.1:88307643-88307662 | MS.gene014611:CDS | 50.0% | |
| ACCCAAGAGTCTAGCAGTTC+TGG | - | chr3.1:88307088-88307107 | MS.gene014611:CDS | 50.0% | |
| ACCCCATTGGAATACTACCC+AGG | - | chr3.1:88307160-88307179 | MS.gene014611:CDS | 50.0% | |
| CTCTGATCAGATCACCCCAT+TGG | - | chr3.1:88307147-88307166 | MS.gene014611:CDS | 50.0% | |
| CTGTTATCTGTTGCAGTGGG+TGG | - | chr3.1:88307124-88307143 | MS.gene014611:CDS | 50.0% | |
| GACACAGACAAGGCCAACTT+CGG | - | chr3.1:88307034-88307053 | MS.gene014611:CDS | 50.0% | |
| GATAAAGCTACACAGGGGCT+TGG | - | chr3.1:88307427-88307446 | MS.gene014611:CDS | 50.0% | |
| GCAACAGATAACAGCAGTGC+CGG | + | chr3.1:88307118-88307137 | None:intergenic | 50.0% | |
| GCCAGAACTGCTAGACTCTT+GGG | + | chr3.1:88307092-88307111 | None:intergenic | 50.0% | |
| TAAAGCTACACAGGGGCTTG+GGG | - | chr3.1:88307429-88307448 | MS.gene014611:CDS | 50.0% | |
| TCCATCCTCAGACACAGACA+AGG | - | chr3.1:88307024-88307043 | MS.gene014611:CDS | 50.0% | |
| TGCCAGAACTGCTAGACTCT+TGG | + | chr3.1:88307093-88307112 | None:intergenic | 50.0% | |
| ! | GCTCCTTTGAAAAACCCGAC+AGG | - | chr3.1:88307274-88307293 | MS.gene014611:CDS | 50.0% |
| !! | ACGATTTTCGGCTACTGGCT+TGG | + | chr3.1:88306937-88306956 | None:intergenic | 50.0% |
| !! | ACTGGCTTGGCTAGCCATAT+TGG | + | chr3.1:88306924-88306943 | None:intergenic | 50.0% |
| !! | GGGTTTTTCAAAGGAGCAGG+TGG | + | chr3.1:88307271-88307290 | None:intergenic | 50.0% |
| !! | GTCGGGTTTTTCAAAGGAGC+AGG | + | chr3.1:88307274-88307293 | None:intergenic | 50.0% |
| !! | TGGCCTGTCGGGTTTTTCAA+AGG | + | chr3.1:88307280-88307299 | None:intergenic | 50.0% |
| !! | TTATCAATTGGTGGTGGGGG+TGG | - | chr3.1:88306875-88306894 | MS.gene014611:CDS | 50.0% |
| GCCTTGTCTGTGTCTGAGGA+TGG | + | chr3.1:88307028-88307047 | None:intergenic | 55.0% | |
| GCTTGGGGCAGTGAAGTACA+AGG | - | chr3.1:88307444-88307463 | MS.gene014611:CDS | 55.0% | |
| GGCCAGTTCAGTGCAGATGA+AGG | - | chr3.1:88307295-88307314 | MS.gene014611:CDS | 55.0% | |
| GGGCTCTTTCTCAAGCAGGT+GGG | - | chr3.1:88307647-88307666 | MS.gene014611:CDS | 55.0% | |
| TGCAGCTTCTCTAGCATGGG+CGG | - | chr3.1:88307810-88307829 | MS.gene014611:CDS | 55.0% | |
| TGGGCTCTTTCTCAAGCAGG+TGG | - | chr3.1:88307646-88307665 | MS.gene014611:CDS | 55.0% | |
| ! | GTCTAGCAGTTCTGGCAAGC+CGG | - | chr3.1:88307096-88307115 | MS.gene014611:CDS | 55.0% |
| ! | TCTGCACTGAACTGGCCTGT+CGG | + | chr3.1:88307292-88307311 | None:intergenic | 55.0% |
| !! | GTTGGCCTTGTCTGTGTCTG+AGG | + | chr3.1:88307032-88307051 | None:intergenic | 55.0% |
| AGGAGCAGGTGGTTGTGTCG+TGG | + | chr3.1:88307260-88307279 | None:intergenic | 60.0% | |
| GCAGGTGGTTGTGTCGTGGT+TGG | + | chr3.1:88307256-88307275 | None:intergenic | 60.0% | |
| TGGTGGGGGTGGTCCTACTT+TGG | - | chr3.1:88306886-88306905 | MS.gene014611:CDS | 60.0% | |
| ! | CTGCACTGAACTGGCCTGTC+GGG | + | chr3.1:88307291-88307310 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 88306590 | 88307837 | 88306590 | ID=MS.gene014611 |
| chr3.1 | mRNA | 88306590 | 88307837 | 88306590 | ID=MS.gene014611.t1;Parent=MS.gene014611 |
| chr3.1 | exon | 88306763 | 88307837 | 88306763 | ID=MS.gene014611.t1.exon1;Parent=MS.gene014611.t1 |
| chr3.1 | CDS | 88306763 | 88307837 | 88306763 | ID=cds.MS.gene014611.t1;Parent=MS.gene014611.t1 |
| chr3.1 | exon | 88306590 | 88306612 | 88306590 | ID=MS.gene014611.t1.exon2;Parent=MS.gene014611.t1 |
| chr3.1 | CDS | 88306590 | 88306612 | 88306590 | ID=cds.MS.gene014611.t1;Parent=MS.gene014611.t1 |
| Gene Sequence |
| Protein sequence |
