Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44682.t1 | XP_013462046.2 | 88.8 | 392 | 39 | 2 | 1 | 390 | 26 | 414 | 6.90E-195 | 689.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44682.t1 | O81862 | 48.6 | 364 | 172 | 6 | 11 | 365 | 9 | 366 | 7.5e-89 | 328.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44682.t1 | A0A396J6K9 | 88.8 | 392 | 39 | 2 | 1 | 390 | 26 | 414 | 5.0e-195 | 689.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054107 | MS.gene44682 | 0.875157 | 3.85E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40706 | MS.gene44682 | PPI |
| MS.gene72024 | MS.gene44682 | PPI |
| MS.gene44682 | MS.gene021954 | PPI |
| MS.gene58750 | MS.gene44682 | PPI |
| MS.gene44682 | MS.gene72022 | PPI |
| MS.gene44682 | MS.gene014611 | PPI |
| MS.gene44682 | MS.gene014610 | PPI |
| MS.gene44682 | MS.gene48549 | PPI |
| MS.gene44682 | MS.gene40257 | PPI |
| MS.gene055584 | MS.gene44682 | PPI |
| MS.gene014609 | MS.gene44682 | PPI |
| MS.gene44682 | MS.gene44679 | PPI |
| MS.gene40255 | MS.gene44682 | PPI |
| MS.gene44682 | MS.gene57747 | PPI |
| MS.gene44682 | MS.gene036626 | PPI |
| MS.gene44682 | MS.gene40705 | PPI |
| MS.gene44682 | MS.gene40707 | PPI |
| MS.gene44682 | MS.gene041428 | PPI |
| MS.gene44682 | MS.gene021944 | PPI |
| MS.gene014611 | MS.gene44682 | PPI |
| MS.gene44682 | MS.gene72024 | PPI |
| MS.gene44682 | MS.gene40256 | PPI |
| MS.gene44682 | MS.gene43244 | PPI |
| MS.gene44682 | MS.gene72023 | PPI |
| MS.gene53841 | MS.gene44682 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44682.t1 | MTR_3g110280 | 89.722 | 360 | 36 | 1 | 1 | 360 | 1 | 359 | 0.0 | 646 |
| MS.gene44682.t1 | MTR_3g110320 | 83.060 | 366 | 60 | 1 | 1 | 366 | 1 | 364 | 0.0 | 623 |
| MS.gene44682.t1 | MTR_3g110320 | 83.102 | 361 | 59 | 1 | 1 | 361 | 1 | 359 | 0.0 | 614 |
| MS.gene44682.t1 | MTR_4g116920 | 75.414 | 362 | 71 | 3 | 1 | 361 | 1 | 345 | 0.0 | 538 |
| MS.gene44682.t1 | MTR_1g013150 | 35.196 | 358 | 213 | 5 | 22 | 366 | 32 | 383 | 8.84e-69 | 222 |
| MS.gene44682.t1 | MTR_4g117040 | 36.022 | 372 | 212 | 10 | 9 | 364 | 6 | 367 | 1.48e-64 | 219 |
| MS.gene44682.t1 | MTR_4g117020 | 34.309 | 376 | 221 | 9 | 3 | 364 | 2 | 365 | 4.12e-62 | 213 |
| MS.gene44682.t1 | MTR_4g117030 | 34.857 | 350 | 206 | 7 | 41 | 377 | 1 | 341 | 1.35e-59 | 206 |
| MS.gene44682.t1 | MTR_4g117000 | 34.483 | 348 | 210 | 7 | 30 | 365 | 35 | 376 | 1.44e-59 | 197 |
| MS.gene44682.t1 | MTR_4g116990 | 35.593 | 354 | 202 | 8 | 30 | 365 | 37 | 382 | 7.28e-57 | 191 |
| MS.gene44682.t1 | MTR_4g117800 | 35.028 | 177 | 111 | 1 | 6 | 182 | 4 | 176 | 1.45e-24 | 105 |
| MS.gene44682.t1 | MTR_7g096730 | 40.476 | 84 | 42 | 3 | 289 | 364 | 3 | 86 | 1.74e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44682.t1 | AT4G19810 | 50.000 | 364 | 167 | 6 | 11 | 365 | 9 | 366 | 4.41e-117 | 345 |
| MS.gene44682.t1 | AT4G19810 | 50.000 | 364 | 167 | 6 | 11 | 365 | 9 | 366 | 4.41e-117 | 345 |
| MS.gene44682.t1 | AT4G19820 | 47.397 | 365 | 177 | 6 | 10 | 365 | 6 | 364 | 8.99e-105 | 314 |
| MS.gene44682.t1 | AT4G19800 | 41.316 | 380 | 200 | 6 | 25 | 387 | 2 | 375 | 4.35e-96 | 293 |
| MS.gene44682.t1 | AT4G19760 | 45.040 | 373 | 173 | 10 | 17 | 365 | 1 | 365 | 1.57e-94 | 288 |
| MS.gene44682.t1 | AT4G19750 | 44.628 | 363 | 173 | 10 | 17 | 362 | 1 | 352 | 1.30e-92 | 282 |
| MS.gene44682.t1 | AT4G19720 | 43.056 | 360 | 178 | 7 | 30 | 371 | 6 | 356 | 2.79e-89 | 274 |
| MS.gene44682.t1 | AT4G19730 | 42.183 | 339 | 167 | 9 | 17 | 333 | 1 | 332 | 1.98e-74 | 235 |
| MS.gene44682.t1 | AT4G19770 | 41.016 | 256 | 141 | 4 | 115 | 362 | 1 | 254 | 2.67e-58 | 191 |
| MS.gene44682.t1 | AT4G19740 | 35.602 | 191 | 109 | 5 | 138 | 318 | 24 | 210 | 1.80e-28 | 111 |
Find 89 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATGGAAGTTGTTATTTC+TGG | 0.149476 | 7.3:+82675941 | None:intergenic |
| ATACCAATAACCACCTTTAA+TGG | 0.242528 | 7.3:+82676253 | None:intergenic |
| GTTTGAGTTGGATAACTATC+TGG | 0.256686 | 7.3:+82675681 | None:intergenic |
| TCTACAAACGCTGCCATTAA+AGG | 0.257757 | 7.3:-82676266 | MS.gene44682:CDS |
| GCACTTGGTTTACCCTTCTA+TGG | 0.267748 | 7.3:-82675561 | MS.gene44682:CDS |
| GCCAAGCAAAATGGATTGTT+TGG | 0.270489 | 7.3:-82675333 | MS.gene44682:CDS |
| CAGCGTTTGTAGAGGAAAAT+TGG | 0.280388 | 7.3:+82676276 | None:intergenic |
| CTGCCATTAAAGGTGGTTAT+TGG | 0.284781 | 7.3:-82676256 | MS.gene44682:CDS |
| ACTCCATTTGTAACCATAGA+AGG | 0.300520 | 7.3:+82675548 | None:intergenic |
| CAGATGAAGGTCTCACAAAA+TGG | 0.306351 | 7.3:-82675614 | MS.gene44682:CDS |
| GTTGCTTATGCCAAGCAAAA+TGG | 0.325981 | 7.3:-82675342 | MS.gene44682:CDS |
| GACCTTCATCTGCACTAAAT+TGG | 0.342441 | 7.3:+82675625 | None:intergenic |
| GCCGCAGAGTCTAGGAGTTC+CGG | 0.370169 | 7.3:-82675834 | MS.gene44682:CDS |
| ATGGTGACTTGGTTGGTATT+AGG | 0.371295 | 7.3:+82676152 | None:intergenic |
| CTATGGTTACAAATGGAGTT+TGG | 0.386230 | 7.3:-82675544 | MS.gene44682:CDS |
| CGAATTACTCTTTAACTGAA+TGG | 0.386421 | 7.3:+82676088 | None:intergenic |
| GAAGTTGAAATGACCAACTT+TGG | 0.388370 | 7.3:-82675888 | MS.gene44682:CDS |
| CTGCACTAAATTGGCCAGTT+GGG | 0.395696 | 7.3:+82675634 | None:intergenic |
| TAACAACAGTACCGGCTTGC+CGG | 0.396736 | 7.3:+82675815 | None:intergenic |
| AGTAAAGCTACGCAGGGACT+AGG | 0.407460 | 7.3:-82675495 | MS.gene44682:CDS |
| CTCAAAATTACTGCTTCAAA+GGG | 0.414658 | 7.3:-82675410 | MS.gene44682:CDS |
| CATTCAGTTAAAGAGTAATT+CGG | 0.416514 | 7.3:-82676087 | MS.gene44682:CDS |
| CTGCTGTGGCCGCAGAGTCT+AGG | 0.417042 | 7.3:-82675842 | MS.gene44682:CDS |
| TGTGCTTTAGTAGAACGTTC+AGG | 0.418141 | 7.3:+82676032 | None:intergenic |
| TGTTGCAAACAACTTGGATT+GGG | 0.430200 | 7.3:-82675733 | MS.gene44682:CDS |
| TACCCTTCTATGGTTACAAA+TGG | 0.432906 | 7.3:-82675551 | MS.gene44682:CDS |
| AAATTGGACAAGACAACAAT+TGG | 0.443469 | 7.3:-82675296 | MS.gene44682:CDS |
| AAACAAGTGGGTGAAATAAG+AGG | 0.449767 | 7.3:+82676196 | None:intergenic |
| GTAAAGCTACGCAGGGACTA+GGG | 0.458430 | 7.3:-82675494 | MS.gene44682:CDS |
| ACTCAAAATTACTGCTTCAA+AGG | 0.460609 | 7.3:-82675411 | MS.gene44682:CDS |
| TCCATGGCCTTGATCTTGAC+TGG | 0.462821 | 7.3:-82675926 | MS.gene44682:CDS |
| ACTGCTTCAAAGGGACAGAT+TGG | 0.463515 | 7.3:-82675401 | MS.gene44682:CDS |
| CTCACAAAATGGGTAGGGTT+AGG | 0.464284 | 7.3:-82675603 | MS.gene44682:CDS |
| AGCTGCGTTTGTAGAAGAAA+TGG | 0.467412 | 7.3:+82676133 | None:intergenic |
| ATGTTGCAAACAACTTGGAT+TGG | 0.470996 | 7.3:-82675734 | MS.gene44682:CDS |
| TTTGAGTTGGATAACTATCT+GGG | 0.472310 | 7.3:+82675682 | None:intergenic |
| CTTGGTTGGTATTAGGATCA+AGG | 0.473190 | 7.3:+82676159 | None:intergenic |
| TCAAGATGTTGCAAACAACT+TGG | 0.478830 | 7.3:-82675739 | MS.gene44682:CDS |
| GTCATTTCAACTTCTGAGGA+TGG | 0.479248 | 7.3:+82675897 | None:intergenic |
| GCGGGTGGTTGTGTTTGAGT+TGG | 0.482952 | 7.3:+82675669 | None:intergenic |
| TCTGCACTAAATTGGCCAGT+TGG | 0.504088 | 7.3:+82675633 | None:intergenic |
| TAACTGAATGGTTTCAGTGA+AGG | 0.511458 | 7.3:+82676100 | None:intergenic |
| TGACCTGGGTAGTACTTCAA+TGG | 0.515075 | 7.3:+82675759 | None:intergenic |
| TTGGAGAATCATGAGGAGAG+TGG | 0.515988 | 7.3:+82676301 | None:intergenic |
| AGATGAAGGTCTCACAAAAT+GGG | 0.516707 | 7.3:-82675613 | MS.gene44682:CDS |
| AATTGGACTCTTTCTCAAGC+AGG | 0.528807 | 7.3:-82675279 | MS.gene44682:intron |
| TTGTAGAGGAAAATTGGAGT+TGG | 0.530932 | 7.3:+82676282 | None:intergenic |
| CTTTACACTAGATTTGCCCC+AGG | 0.531539 | 7.3:+82674453 | None:intergenic |
| GTTGGTCATTTCAACTTCTG+AGG | 0.534568 | 7.3:+82675893 | None:intergenic |
| GTCTAGGAGTTCCGGCAAGC+CGG | 0.536961 | 7.3:-82675826 | MS.gene44682:CDS |
| TTGCTTGGCATAAGCAACCT+TGG | 0.538135 | 7.3:+82675347 | None:intergenic |
| TTGTTTGCAACATCTTGACC+TGG | 0.548598 | 7.3:+82675744 | None:intergenic |
| GCCAGTCAAGATCAAGGCCA+TGG | 0.551440 | 7.3:+82675925 | None:intergenic |
| AGTTGTTATTTCTGGCTAGT+CGG | 0.552779 | 7.3:+82675949 | None:intergenic |
| TGTAATGAGAAAACCAAAGT+TGG | 0.557402 | 7.3:+82675875 | None:intergenic |
| TTGTTATCTGCTGCAGTGGG+TGG | 0.559981 | 7.3:-82675798 | MS.gene44682:CDS |
| CTGTTGTTATCTGCTGCAGT+GGG | 0.561968 | 7.3:-82675801 | MS.gene44682:CDS |
| ACTGGCTTGGCTAGACATGT+TGG | 0.568429 | 7.3:+82676001 | None:intergenic |
| TACAGCGTGGAGAGCTGCTG+TGG | 0.570204 | 7.3:-82675856 | MS.gene44682:CDS |
| GGCCAATTTAGTGCAGATGA+AGG | 0.571051 | 7.3:-82675627 | MS.gene44682:CDS |
| GAAGGTCTCACAAAATGGGT+AGG | 0.571961 | 7.3:-82675609 | MS.gene44682:CDS |
| AACAAGTGGGTGAAATAAGA+GGG | 0.575691 | 7.3:+82676197 | None:intergenic |
| CAGCAAATGCACAAAACAAG+TGG | 0.579073 | 7.3:+82676183 | None:intergenic |
| CTCCATTTGTAACCATAGAA+GGG | 0.586080 | 7.3:+82675549 | None:intergenic |
| AAGGTCTCACAAAATGGGTA+GGG | 0.587493 | 7.3:-82675608 | MS.gene44682:CDS |
| CACTCAGAGTATATCTGCCA+AGG | 0.587655 | 7.3:-82675364 | MS.gene44682:CDS |
| ATCTAGTGTAAAGCATGTTG+TGG | 0.588380 | 7.3:-82674443 | MS.gene44682:CDS |
| GATACAGCCAGTCAAGATCA+AGG | 0.589592 | 7.3:+82675919 | None:intergenic |
| AGAAGAAATGGTGACTTGGT+TGG | 0.600417 | 7.3:+82676145 | None:intergenic |
| GCAGCAGATAACAACAGTAC+CGG | 0.602334 | 7.3:+82675807 | None:intergenic |
| TGAGGAGAGTGGAAATCAAG+AGG | 0.606133 | 7.3:+82676312 | None:intergenic |
| TTCAAAGGGACAGATTGGTA+TGG | 0.606399 | 7.3:-82675396 | MS.gene44682:CDS |
| TTTAATGGCAGCGTTTGTAG+AGG | 0.608544 | 7.3:+82676268 | None:intergenic |
| ACTGTTGTTATCTGCTGCAG+TGG | 0.615630 | 7.3:-82675802 | MS.gene44682:CDS |
| GGTGGTTATTGGTATTCTGA+TGG | 0.621200 | 7.3:-82676245 | MS.gene44682:CDS |
| TTTGCAGCTTCTCAAGCCTG+GGG | 0.621387 | 7.3:-82674469 | MS.gene44682:intron |
| TAAAGCTACGCAGGGACTAG+GGG | 0.627917 | 7.3:-82675493 | MS.gene44682:CDS |
| GCCAGAAATAACAACTTCCA+TGG | 0.628402 | 7.3:-82675942 | MS.gene44682:CDS |
| ACTAGGGGCAGTGAAGTACA+AGG | 0.628451 | 7.3:-82675478 | MS.gene44682:CDS |
| ATTGGAGTTGGAGAATCATG+AGG | 0.636575 | 7.3:+82676294 | None:intergenic |
| TTGTAGAAGAAATGGTGACT+TGG | 0.641849 | 7.3:+82676141 | None:intergenic |
| AGCAAATGCACAAAACAAGT+GGG | 0.646781 | 7.3:+82676184 | None:intergenic |
| GATCAATCTCAGAAACTGCA+AGG | 0.648716 | 7.3:+82676219 | None:intergenic |
| TGTTTGCAACATCTTGACCT+GGG | 0.652675 | 7.3:+82675745 | None:intergenic |
| ACAAACGCTGCCATTAAAGG+TGG | 0.664680 | 7.3:-82676263 | MS.gene44682:CDS |
| GTTGTGGCTATAGTCACACC+AGG | 0.665701 | 7.3:-82674427 | MS.gene44682:CDS |
| ACTCCATTGAAGTACTACCC+AGG | 0.697331 | 7.3:-82675762 | MS.gene44682:CDS |
| GCCGGAACTCCTAGACTCTG+CGG | 0.700936 | 7.3:+82675833 | None:intergenic |
| TTGAGTTGGATAACTATCTG+GGG | 0.706447 | 7.3:+82675683 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATACAATAATTGAA+GGG | + | chr7.3:82676024-82676043 | None:intergenic | 10.0% |
| !!! | TAATTAAATGTCATTTAAAT+AGG | - | chr7.3:82675871-82675890 | MS.gene44682:CDS | 10.0% |
| !!! | TAATTTTTTTTTTGTTAGAA+TGG | + | chr7.3:82676235-82676254 | None:intergenic | 10.0% |
| !! | GAAAAATATACATTTATCTA+TGG | - | chr7.3:82675727-82675746 | MS.gene44682:CDS | 15.0% |
| !! | GTAAAAAATACAATAATTGA+AGG | + | chr7.3:82676025-82676044 | None:intergenic | 15.0% |
| !!! | CTTTTTATAACTCTTTATAT+CGG | + | chr7.3:82676157-82676176 | None:intergenic | 15.0% |
| !! | ACAAGGATATAAAAAATACT+GGG | - | chr7.3:82675270-82675289 | MS.gene44682:intron | 20.0% |
| !! | ACTAAGTTGTAGTAAATATA+TGG | - | chr7.3:82675675-82675694 | MS.gene44682:CDS | 20.0% |
| !! | AGAACATGAAAAAAAAATTG+GGG | + | chr7.3:82676335-82676354 | None:intergenic | 20.0% |
| !! | ATTATAAAAAGTTAAGCACA+AGG | + | chr7.3:82675824-82675843 | None:intergenic | 20.0% |
| !! | ATTCTATACCAATGTATAAA+GGG | - | chr7.3:82675790-82675809 | MS.gene44682:CDS | 20.0% |
| !! | CAGAACATGAAAAAAAAATT+GGG | + | chr7.3:82676336-82676355 | None:intergenic | 20.0% |
| !! | CTAAGTTGTAGTAAATATAT+GGG | - | chr7.3:82675676-82675695 | MS.gene44682:CDS | 20.0% |
| !! | TACAAGGATATAAAAAATAC+TGG | - | chr7.3:82675269-82675288 | MS.gene44682:intron | 20.0% |
| !! | TATTCTATACCAATGTATAA+AGG | - | chr7.3:82675789-82675808 | MS.gene44682:CDS | 20.0% |
| !! | TCAGAACATGAAAAAAAAAT+TGG | + | chr7.3:82676337-82676356 | None:intergenic | 20.0% |
| !! | TTTGACATACCATTAAAAAT+AGG | + | chr7.3:82676205-82676224 | None:intergenic | 20.0% |
| !!! | CTTGTGTTTTTTTACTAAAA+GGG | - | chr7.3:82675557-82675576 | MS.gene44682:CDS | 20.0% |
| !!! | TAGCTTTACTAAAAATTCTA+CGG | + | chr7.3:82675226-82675245 | None:intergenic | 20.0% |
| !!! | TCTTGTGTTTTTTTACTAAA+AGG | - | chr7.3:82675556-82675575 | MS.gene44682:CDS | 20.0% |
| ! | AAGGATATAAAAAATACTGG+GGG | - | chr7.3:82675272-82675291 | MS.gene44682:intron | 25.0% |
| ! | CAAGGATATAAAAAATACTG+GGG | - | chr7.3:82675271-82675290 | MS.gene44682:intron | 25.0% |
| ! | CATTCAGTTAAAGAGTAATT+CGG | - | chr7.3:82674644-82674663 | MS.gene44682:intron | 25.0% |
| ! | CTAAAAATTCTACGGTTATT+AGG | + | chr7.3:82675218-82675237 | None:intergenic | 25.0% |
| ! | TTCTATACCAATGTATAAAG+GGG | - | chr7.3:82675791-82675810 | MS.gene44682:CDS | 25.0% |
| !! | AAGAATCTATGAACGATTTT+CGG | + | chr7.3:82674758-82674777 | None:intergenic | 25.0% |
| !!! | CAACAAAGAAGTGTTTTATT+AGG | + | chr7.3:82675494-82675513 | None:intergenic | 25.0% |
| !!! | CTTTTACCACCTATTTTTAA+TGG | - | chr7.3:82676193-82676212 | MS.gene44682:CDS | 25.0% |
| AAAATAGGTGGTAAAAGTCA+AGG | + | chr7.3:82676190-82676209 | None:intergenic | 30.0% | |
| AAATTGGACAAGACAACAAT+TGG | - | chr7.3:82675435-82675454 | MS.gene44682:CDS | 30.0% | |
| AAGCTCCTCTTGAAAAAAAA+AGG | + | chr7.3:82675519-82675538 | None:intergenic | 30.0% | |
| ACTCAAAATTACTGCTTCAA+AGG | - | chr7.3:82675320-82675339 | MS.gene44682:CDS | 30.0% | |
| AGGATATAAAAAATACTGGG+GGG | - | chr7.3:82675273-82675292 | MS.gene44682:intron | 30.0% | |
| ATACCAATAACCACCTTTAA+TGG | + | chr7.3:82674481-82674500 | None:intergenic | 30.0% | |
| CAATAATTGAAGGGCAAAAT+TGG | + | chr7.3:82676015-82676034 | None:intergenic | 30.0% | |
| CGAATTACTCTTTAACTGAA+TGG | + | chr7.3:82674646-82674665 | None:intergenic | 30.0% | |
| CTCAAAATTACTGCTTCAAA+GGG | - | chr7.3:82675321-82675340 | MS.gene44682:CDS | 30.0% | |
| GACATACCATTAAAAATAGG+TGG | + | chr7.3:82676202-82676221 | None:intergenic | 30.0% | |
| TATAACTCTTTATATCGGCA+TGG | + | chr7.3:82676152-82676171 | None:intergenic | 30.0% | |
| TGTAATGAGAAAACCAAAGT+TGG | + | chr7.3:82674859-82674878 | None:intergenic | 30.0% | |
| TGTAGTAAATATATGGGCAA+TGG | - | chr7.3:82675682-82675701 | MS.gene44682:CDS | 30.0% | |
| ! | AAAACGCTTTTATCAATTGG+TGG | - | chr7.3:82674669-82674688 | MS.gene44682:intron | 30.0% |
| ! | GATTGTTTGGATATTTTGCT+TGG | - | chr7.3:82675411-82675430 | MS.gene44682:CDS | 30.0% |
| ! | GTGAAAACGCTTTTATCAAT+TGG | - | chr7.3:82674666-82674685 | MS.gene44682:intron | 30.0% |
| !! | GCAGTAATTTTGAGTATATG+TGG | + | chr7.3:82675315-82675334 | None:intergenic | 30.0% |
| !! | TTTGAGTTGGATAACTATCT+GGG | + | chr7.3:82675052-82675071 | None:intergenic | 30.0% |
| !!! | AATTTTTAGTAAAGCTACGC+AGG | - | chr7.3:82675229-82675248 | MS.gene44682:intron | 30.0% |
| !!! | ATTTTTAGTAAAGCTACGCA+GGG | - | chr7.3:82675230-82675249 | MS.gene44682:intron | 30.0% |
| !!! | TTGCACCTTTTTTTTTCAAG+AGG | - | chr7.3:82675511-82675530 | MS.gene44682:CDS | 30.0% |
| AAAAAAATTGGGGTAGAACC+TGG | + | chr7.3:82676325-82676344 | None:intergenic | 35.0% | |
| AAACAAGTGGGTGAAATAAG+AGG | + | chr7.3:82674538-82674557 | None:intergenic | 35.0% | |
| AACAAGTGGGTGAAATAAGA+GGG | + | chr7.3:82674537-82674556 | None:intergenic | 35.0% | |
| ACTCCATTTGTAACCATAGA+AGG | + | chr7.3:82675186-82675205 | None:intergenic | 35.0% | |
| AGAACATCCCCTTTATACAT+TGG | + | chr7.3:82675801-82675820 | None:intergenic | 35.0% | |
| AGATGAAGGTCTCACAAAAT+GGG | - | chr7.3:82675118-82675137 | MS.gene44682:intron | 35.0% | |
| AGCAAATGCACAAAACAAGT+GGG | + | chr7.3:82674550-82674569 | None:intergenic | 35.0% | |
| ATCTAGTGTAAAGCATGTTG+TGG | - | chr7.3:82676288-82676307 | MS.gene44682:CDS | 35.0% | |
| ATGTTGCAAACAACTTGGAT+TGG | - | chr7.3:82674997-82675016 | MS.gene44682:intron | 35.0% | |
| CTATGGTTACAAATGGAGTT+TGG | - | chr7.3:82675187-82675206 | MS.gene44682:intron | 35.0% | |
| CTCCATTTGTAACCATAGAA+GGG | + | chr7.3:82675185-82675204 | None:intergenic | 35.0% | |
| GAAGTTGAAATGACCAACTT+TGG | - | chr7.3:82674843-82674862 | MS.gene44682:intron | 35.0% | |
| TAACTGAATGGTTTCAGTGA+AGG | + | chr7.3:82674634-82674653 | None:intergenic | 35.0% | |
| TACCCTTCTATGGTTACAAA+TGG | - | chr7.3:82675180-82675199 | MS.gene44682:intron | 35.0% | |
| TAGGAACTCACAACAATAGA+TGG | - | chr7.3:82675890-82675909 | MS.gene44682:CDS | 35.0% | |
| TCAAGATGTTGCAAACAACT+TGG | - | chr7.3:82674992-82675011 | MS.gene44682:intron | 35.0% | |
| TCTATCGCTATAAGTGATGT+TGG | + | chr7.3:82675653-82675672 | None:intergenic | 35.0% | |
| TGTTGCAAACAACTTGGATT+GGG | - | chr7.3:82674998-82675017 | MS.gene44682:intron | 35.0% | |
| TTGTAGAAGAAATGGTGACT+TGG | + | chr7.3:82674593-82674612 | None:intergenic | 35.0% | |
| TTGTAGAGGAAAATTGGAGT+TGG | + | chr7.3:82674452-82674471 | None:intergenic | 35.0% | |
| ! | GGATATTTTGCTTGGCAAAT+TGG | - | chr7.3:82675419-82675438 | MS.gene44682:CDS | 35.0% |
| ! | TCCAAACAATCCATTTTGCT+TGG | + | chr7.3:82675402-82675421 | None:intergenic | 35.0% |
| !! | AGTTGTTATTTCTGGCTAGT+CGG | + | chr7.3:82674785-82674804 | None:intergenic | 35.0% |
| !! | GTTTGAGTTGGATAACTATC+TGG | + | chr7.3:82675053-82675072 | None:intergenic | 35.0% |
| !! | TTGAGTTGGATAACTATCTG+GGG | + | chr7.3:82675051-82675070 | None:intergenic | 35.0% |
| AAGGTCTCACAAAATGGGTA+GGG | - | chr7.3:82675123-82675142 | MS.gene44682:intron | 40.0% | |
| AATTGGACTCTTTCTCAAGC+AGG | - | chr7.3:82675452-82675471 | MS.gene44682:CDS | 40.0% | |
| ACGAAGCCTCTAAATTATCG+AGG | + | chr7.3:82675587-82675606 | None:intergenic | 40.0% | |
| AGCTGCGTTTGTAGAAGAAA+TGG | + | chr7.3:82674601-82674620 | None:intergenic | 40.0% | |
| ATTGGAGTTGGAGAATCATG+AGG | + | chr7.3:82674440-82674459 | None:intergenic | 40.0% | |
| CAATATTGCTTCTACTGTCG+TGG | + | chr7.3:82675922-82675941 | None:intergenic | 40.0% | |
| CACGACAGTAGAAGCAATAT+TGG | - | chr7.3:82675920-82675939 | MS.gene44682:CDS | 40.0% | |
| CAGATGAAGGTCTCACAAAA+TGG | - | chr7.3:82675117-82675136 | MS.gene44682:intron | 40.0% | |
| CAGCAAATGCACAAAACAAG+TGG | + | chr7.3:82674551-82674570 | None:intergenic | 40.0% | |
| CAGCGTTTGTAGAGGAAAAT+TGG | + | chr7.3:82674458-82674477 | None:intergenic | 40.0% | |
| CCAAAAAGCAAACTTGCACT+TGG | - | chr7.3:82675155-82675174 | MS.gene44682:intron | 40.0% | |
| CTGCCATTAAAGGTGGTTAT+TGG | - | chr7.3:82674475-82674494 | MS.gene44682:intron | 40.0% | |
| GACCTTCATCTGCACTAAAT+TGG | + | chr7.3:82675109-82675128 | None:intergenic | 40.0% | |
| GATCAATCTCAGAAACTGCA+AGG | + | chr7.3:82674515-82674534 | None:intergenic | 40.0% | |
| GCCAGAAATAACAACTTCCA+TGG | - | chr7.3:82674789-82674808 | MS.gene44682:intron | 40.0% | |
| GGTCATCCTCGATAATTTAG+AGG | - | chr7.3:82675578-82675597 | MS.gene44682:CDS | 40.0% | |
| GGTGGTTATTGGTATTCTGA+TGG | - | chr7.3:82674486-82674505 | MS.gene44682:intron | 40.0% | |
| GTTGCTTATGCCAAGCAAAA+TGG | - | chr7.3:82675389-82675408 | MS.gene44682:CDS | 40.0% | |
| GTTGGTCATTTCAACTTCTG+AGG | + | chr7.3:82674841-82674860 | None:intergenic | 40.0% | |
| TCTACAAACGCTGCCATTAA+AGG | - | chr7.3:82674465-82674484 | MS.gene44682:CDS | 40.0% | |
| TGTGCTTTAGTAGAACGTTC+AGG | + | chr7.3:82674702-82674721 | None:intergenic | 40.0% | |
| TGTTTGCAACATCTTGACCT+GGG | + | chr7.3:82674989-82675008 | None:intergenic | 40.0% | |
| TTCAAAGGGACAGATTGGTA+TGG | - | chr7.3:82675335-82675354 | MS.gene44682:CDS | 40.0% | |
| TTGTTTGCAACATCTTGACC+TGG | + | chr7.3:82674990-82675009 | None:intergenic | 40.0% | |
| TTTAATGGCAGCGTTTGTAG+AGG | + | chr7.3:82674466-82674485 | None:intergenic | 40.0% | |
| ! | ACGCTTTTATCAATTGGTGG+TGG | - | chr7.3:82674672-82674691 | MS.gene44682:intron | 40.0% |
| ! | CAAGAGGAACGAATGCTTTT+TGG | + | chr7.3:82674406-82674425 | None:intergenic | 40.0% |
| ! | CTTGGTTGGTATTAGGATCA+AGG | + | chr7.3:82674575-82674594 | None:intergenic | 40.0% |
| ! | GTCATTTCAACTTCTGAGGA+TGG | + | chr7.3:82674837-82674856 | None:intergenic | 40.0% |
| ! | TATGAACGATTTTCGGCTAC+TGG | + | chr7.3:82674751-82674770 | None:intergenic | 40.0% |
| !! | AGAAGAAATGGTGACTTGGT+TGG | + | chr7.3:82674589-82674608 | None:intergenic | 40.0% |
| !! | AGTTGGGTTTTTCAAAGGAG+CGG | + | chr7.3:82675084-82675103 | None:intergenic | 40.0% |
| !! | ATGGTGACTTGGTTGGTATT+AGG | + | chr7.3:82674582-82674601 | None:intergenic | 40.0% |
| !! | CCAAGTGCAAGTTTGCTTTT+TGG | + | chr7.3:82675158-82675177 | None:intergenic | 40.0% |
| !! | GCCAAGCAAAATGGATTGTT+TGG | - | chr7.3:82675398-82675417 | MS.gene44682:CDS | 40.0% |
| !! | GCCATGGAAGTTGTTATTTC+TGG | + | chr7.3:82674793-82674812 | None:intergenic | 40.0% |
| !! | TTGGTTTTCTCATTACAGCG+TGG | - | chr7.3:82674862-82674881 | MS.gene44682:intron | 40.0% |
| !!! | CTTTTATCAATTGGTGGTGG+TGG | - | chr7.3:82674675-82674694 | MS.gene44682:intron | 40.0% |
| ACAAACGCTGCCATTAAAGG+TGG | - | chr7.3:82674468-82674487 | MS.gene44682:intron | 45.0% | |
| ACTGCTTCAAAGGGACAGAT+TGG | - | chr7.3:82675330-82675349 | MS.gene44682:CDS | 45.0% | |
| ACTGTTGTTATCTGCTGCAG+TGG | - | chr7.3:82674929-82674948 | MS.gene44682:intron | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | - | chr7.3:82675367-82675386 | MS.gene44682:CDS | 45.0% | |
| CTCACAAAATGGGTAGGGTT+AGG | - | chr7.3:82675128-82675147 | MS.gene44682:intron | 45.0% | |
| CTGCACTAAATTGGCCAGTT+GGG | + | chr7.3:82675100-82675119 | None:intergenic | 45.0% | |
| CTGTTGTTATCTGCTGCAGT+GGG | - | chr7.3:82674930-82674949 | MS.gene44682:intron | 45.0% | |
| CTTTACACTAGATTTGCCCC+AGG | + | chr7.3:82676281-82676300 | None:intergenic | 45.0% | |
| GAAGGTCTCACAAAATGGGT+AGG | - | chr7.3:82675122-82675141 | MS.gene44682:intron | 45.0% | |
| GATACAGCCAGTCAAGATCA+AGG | + | chr7.3:82674815-82674834 | None:intergenic | 45.0% | |
| GCACTTGGTTTACCCTTCTA+TGG | - | chr7.3:82675170-82675189 | MS.gene44682:intron | 45.0% | |
| GCAGCAGATAACAACAGTAC+CGG | + | chr7.3:82674927-82674946 | None:intergenic | 45.0% | |
| GGCCAATTTAGTGCAGATGA+AGG | - | chr7.3:82675104-82675123 | MS.gene44682:intron | 45.0% | |
| TCTGCACTAAATTGGCCAGT+TGG | + | chr7.3:82675101-82675120 | None:intergenic | 45.0% | |
| TGACCTGGGTAGTACTTCAA+TGG | + | chr7.3:82674975-82674994 | None:intergenic | 45.0% | |
| TGAGGAGAGTGGAAATCAAG+AGG | + | chr7.3:82674422-82674441 | None:intergenic | 45.0% | |
| TTGCTTGGCATAAGCAACCT+TGG | + | chr7.3:82675387-82675406 | None:intergenic | 45.0% | |
| TTGGAGAATCATGAGGAGAG+TGG | + | chr7.3:82674433-82674452 | None:intergenic | 45.0% | |
| ! | ACTCCATTGAAGTACTACCC+AGG | - | chr7.3:82674969-82674988 | MS.gene44682:intron | 45.0% |
| ! | GCTCCTTTGAAAAACCCAAC+TGG | - | chr7.3:82675083-82675102 | MS.gene44682:intron | 45.0% |
| ! | TTTTGCAGCTTCTCAAGCCT+GGG | - | chr7.3:82676261-82676280 | MS.gene44682:CDS | 45.0% |
| ! | TTTTTGCAGCTTCTCAAGCC+TGG | - | chr7.3:82676260-82676279 | MS.gene44682:CDS | 45.0% |
| !! | GTTGGGTTTTTCAAAGGAGC+GGG | + | chr7.3:82675083-82675102 | None:intergenic | 45.0% |
| !! | TGGCCAGTTGGGTTTTTCAA+AGG | + | chr7.3:82675089-82675108 | None:intergenic | 45.0% |
| !!! | TATTAAAAAATATTTTGTTT+TGG | - | chr7.3:82675975-82675994 | MS.gene44682:CDS | 5.0% |
| ACTAGGGGCAGTGAAGTACA+AGG | - | chr7.3:82675253-82675272 | MS.gene44682:intron | 50.0% | |
| AGTAAAGCTACGCAGGGACT+AGG | - | chr7.3:82675236-82675255 | MS.gene44682:intron | 50.0% | |
| GTAAAGCTACGCAGGGACTA+GGG | - | chr7.3:82675237-82675256 | MS.gene44682:intron | 50.0% | |
| GTTGTGGCTATAGTCACACC+AGG | - | chr7.3:82676304-82676323 | MS.gene44682:CDS | 50.0% | |
| TAAAGCTACGCAGGGACTAG+GGG | - | chr7.3:82675238-82675257 | MS.gene44682:intron | 50.0% | |
| TTGTTATCTGCTGCAGTGGG+TGG | - | chr7.3:82674933-82674952 | MS.gene44682:intron | 50.0% | |
| TTTGCAGCTTCTCAAGCCTG+GGG | - | chr7.3:82676262-82676281 | MS.gene44682:CDS | 50.0% | |
| ! | TCCATGGCCTTGATCTTGAC+TGG | - | chr7.3:82674805-82674824 | MS.gene44682:intron | 50.0% |
| !! | ACGATTTTCGGCTACTGGCT+TGG | + | chr7.3:82674746-82674765 | None:intergenic | 50.0% |
| !! | ACTGGCTTGGCTAGACATGT+TGG | + | chr7.3:82674733-82674752 | None:intergenic | 50.0% |
| !! | TAACAACAGTACCGGCTTGC+CGG | + | chr7.3:82674919-82674938 | None:intergenic | 50.0% |
| GCCAGTCAAGATCAAGGCCA+TGG | + | chr7.3:82674809-82674828 | None:intergenic | 55.0% | |
| GCGGGTGGTTGTGTTTGAGT+TGG | + | chr7.3:82675065-82675084 | None:intergenic | 55.0% | |
| !! | GGGTTTTTCAAAGGAGCGGG+TGG | + | chr7.3:82675080-82675099 | None:intergenic | 55.0% |
| GCCGCAGAGTCTAGGAGTTC+CGG | - | chr7.3:82674897-82674916 | MS.gene44682:intron | 60.0% | |
| GCCGGAACTCCTAGACTCTG+CGG | + | chr7.3:82674901-82674920 | None:intergenic | 60.0% | |
| GTCTAGGAGTTCCGGCAAGC+CGG | - | chr7.3:82674905-82674924 | MS.gene44682:intron | 60.0% | |
| TACAGCGTGGAGAGCTGCTG+TGG | - | chr7.3:82674875-82674894 | MS.gene44682:intron | 60.0% | |
| CTGCTGTGGCCGCAGAGTCT+AGG | - | chr7.3:82674889-82674908 | MS.gene44682:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 82674393 | 82676360 | 82674393 | ID=MS.gene44682 |
| chr7.3 | mRNA | 82674393 | 82676360 | 82674393 | ID=MS.gene44682.t1;Parent=MS.gene44682 |
| chr7.3 | exon | 82675280 | 82676360 | 82675280 | ID=MS.gene44682.t1.exon1;Parent=MS.gene44682.t1 |
| chr7.3 | CDS | 82675280 | 82676360 | 82675280 | ID=cds.MS.gene44682.t1;Parent=MS.gene44682.t1 |
| chr7.3 | exon | 82674393 | 82674484 | 82674393 | ID=MS.gene44682.t1.exon2;Parent=MS.gene44682.t1 |
| chr7.3 | CDS | 82674393 | 82674484 | 82674393 | ID=cds.MS.gene44682.t1;Parent=MS.gene44682.t1 |
| Gene Sequence |
| Protein sequence |
